AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048350 MtrunA17_Chr7g0216891 98.107 581 10 1 1 580 4 584 0.0 1172
Msa1048350 MtrunA17_Chr4g0060271 39.931 576 259 21 35 562 68 604 5.48e-82 268
Msa1048350 MtrunA17_Chr4g0051181 41.304 322 88 9 197 484 225 479 4.70e-51 182
Msa1048350 MtrunA17_Chr3g0099641 36.426 291 114 4 188 478 225 444 8.51e-49 176
Msa1048350 MtrunA17_Chr2g0322391 30.769 494 230 14 15 479 146 556 3.79e-47 174
Msa1048350 MtrunA17_Chr7g0270831 71.429 98 28 0 194 291 195 292 5.67e-47 170
Msa1048350 MtrunA17_Chr2g0288871 38.697 261 132 6 21 274 125 364 2.65e-45 168
Msa1048350 MtrunA17_Chr2g0302391 34.824 313 119 10 188 490 185 422 1.13e-39 150
Msa1048350 MtrunA17_Chr4g0025051 39.269 219 93 4 166 384 292 470 1.03e-38 150
Msa1048350 MtrunA17_Chr4g0075201 33.573 417 180 14 42 416 125 486 1.71e-38 148
Msa1048350 MtrunA17_Chr4g0025061 47.917 144 68 2 166 309 317 453 1.82e-37 147
Msa1048350 MtrunA17_Chr4g0024391 31.761 318 153 10 49 309 12 322 2.45e-35 139
Msa1048350 MtrunA17_Chr4g0001361 42.857 133 59 4 194 309 139 271 1.77e-25 107
Msa1048350 MtrunA17_Chr1g0150281 53.333 75 35 0 198 272 123 197 3.67e-23 99.8
Msa1048350 MtrunA17_Chr3g0136961 61.017 59 23 0 214 272 137 195 4.49e-23 99.8
Msa1048350 MtrunA17_Chr2g0333851 60.000 60 24 0 214 273 168 227 2.57e-22 98.2
Msa1048350 MtrunA17_Chr1g0150271 41.228 114 60 3 166 272 45 158 2.72e-22 96.7
Msa1048350 MtrunA17_Chr5g0432161 55.000 80 31 2 197 272 399 477 4.26e-22 100
Msa1048350 MtrunA17_Chr5g0432161 52.542 59 26 2 215 273 244 300 1.64e-12 70.1
Msa1048350 MtrunA17_Chr3g0106491 56.338 71 30 1 202 272 352 421 6.67e-22 99.4
Msa1048350 MtrunA17_Chr3g0106491 50.794 63 29 2 215 277 198 258 5.85e-13 71.6
Msa1048350 MtrunA17_Chr7g0243891 49.412 85 42 1 199 283 358 441 8.49e-22 99.4
Msa1048350 MtrunA17_Chr7g0243891 53.448 58 25 2 216 273 217 272 6.24e-12 68.2
Msa1048350 MtrunA17_Chr5g0445311 44.231 104 56 2 177 280 327 428 1.30e-21 98.6
Msa1048350 MtrunA17_Chr5g0445311 52.542 59 26 2 215 273 200 256 1.44e-11 67.0
Msa1048350 MtrunA17_Chr3g0101131 38.462 130 61 3 154 272 350 471 1.31e-21 99.0
Msa1048350 MtrunA17_Chr3g0101131 50.847 59 27 2 215 273 243 299 3.14e-11 66.2
Msa1048350 MtrunA17_Chr5g0418191 42.276 123 68 3 152 272 255 376 5.26e-21 95.9
Msa1048350 MtrunA17_Chr5g0418191 50.746 67 28 4 209 274 146 208 5.33e-12 68.2
Msa1048350 MtrunA17_Chr3g0079691 47.917 96 47 2 202 295 482 576 6.27e-21 97.1
Msa1048350 MtrunA17_Chr3g0079691 47.826 69 33 3 205 273 271 336 1.39e-11 67.4
Msa1048350 MtrunA17_Chr7g0249301 47.674 86 41 2 192 274 266 350 7.36e-21 94.7
Msa1048350 MtrunA17_Chr4g0004911 50.649 77 37 1 198 274 319 394 1.04e-20 95.5
Msa1048350 MtrunA17_Chr4g0004911 51.724 58 27 1 216 273 185 241 7.78e-14 74.3
Msa1048350 MtrunA17_Chr7g0249311 35.766 137 78 3 192 319 366 501 1.11e-20 96.3
Msa1048350 MtrunA17_Chr2g0294231 50.649 77 37 1 202 278 190 265 1.33e-20 94.0
Msa1048350 MtrunA17_Chr1g0150801 51.389 72 34 1 202 273 89 159 5.48e-20 87.4
Msa1048350 MtrunA17_Chr4g0042831 41.228 114 63 3 159 272 225 334 6.23e-20 92.0
Msa1048350 MtrunA17_Chr7g0218081 43.011 93 48 2 184 272 375 466 1.61e-19 92.0
Msa1048350 MtrunA17_Chr7g0218081 43.023 86 46 3 187 272 201 283 2.16e-11 66.6
Msa1048350 MtrunA17_Chr7g0270191 34.586 133 76 3 185 309 107 236 3.00e-19 88.6
Msa1048350 MtrunA17_Chr7g0224801 46.914 81 40 2 206 286 86 163 3.94e-19 85.1
Msa1048350 MtrunA17_Chr4g0051881 47.619 84 39 2 202 281 165 247 5.46e-19 88.6
Msa1048350 MtrunA17_Chr1g0194481 37.671 146 64 4 202 321 145 289 9.36e-19 87.8
Msa1048350 MtrunA17_Chr7g0263531 51.948 77 34 2 203 277 349 424 9.68e-19 89.0
Msa1048350 MtrunA17_Chr7g0263531 52.381 63 27 3 210 272 185 244 3.46e-12 68.9
Msa1048350 MtrunA17_Chr4g0074001 50.000 80 39 1 193 272 337 415 9.83e-19 89.7
Msa1048350 MtrunA17_Chr4g0068541 37.956 137 59 4 201 312 194 329 1.10e-18 88.6
Msa1048350 MtrunA17_Chr5g0447701 52.113 71 33 1 202 272 239 308 1.30e-18 88.2
Msa1048350 MtrunA17_Chr5g0447701 34.677 124 78 3 216 339 93 213 6.40e-11 64.7
Msa1048350 MtrunA17_Chr7g0270051 37.209 129 68 3 215 333 53 178 2.06e-18 85.5
Msa1048350 MtrunA17_Chr5g0401821 54.412 68 29 1 210 277 196 261 3.23e-18 85.1
Msa1048350 MtrunA17_Chr4g0053281 57.627 59 25 0 216 274 267 325 4.63e-18 85.9
Msa1048350 MtrunA17_Chr1g0147881 46.988 83 36 2 200 276 243 323 1.00e-17 84.7
Msa1048350 MtrunA17_Chr5g0443131 46.914 81 42 1 202 282 144 223 2.10e-17 83.6
Msa1048350 MtrunA17_Chr8g0386241 40.909 88 48 3 194 281 85 168 2.47e-17 80.1
Msa1048350 MtrunA17_Chr5g0419241 61.404 57 22 0 187 243 49 105 4.00e-17 77.4
Msa1048350 MtrunA17_Chr8g0383251 40.449 89 50 2 202 288 95 182 4.88e-17 79.3
Msa1048350 MtrunA17_Chr1g0184691 56.140 57 25 0 216 272 294 350 5.33e-17 82.8
Msa1048350 MtrunA17_Chr8g0379461 48.000 75 38 1 205 279 67 140 1.09e-16 80.1
Msa1048350 MtrunA17_Chr7g0228941 45.238 84 38 2 195 272 28 109 1.43e-16 76.3
Msa1048350 MtrunA17_Chr8g0335811 47.887 71 36 1 202 272 141 210 1.43e-16 79.3
Msa1048350 MtrunA17_Chr2g0293481 42.857 91 52 0 216 306 268 358 1.45e-16 82.8
Msa1048350 MtrunA17_Chr1g0188941 54.237 59 26 1 214 272 50 107 1.52e-16 75.9
Msa1048350 MtrunA17_Chr7g0248721 50.000 72 34 2 202 273 128 197 1.55e-16 79.0
Msa1048350 MtrunA17_Chr3g0129361 47.887 71 36 1 202 272 131 200 1.68e-16 79.0
Msa1048350 MtrunA17_Chr3g0139021 48.235 85 33 3 200 275 295 377 3.79e-16 80.9
Msa1048350 MtrunA17_Chr5g0418781 47.297 74 38 1 199 272 108 180 5.26e-16 78.6
Msa1048350 MtrunA17_Chr8g0383351 52.381 63 29 1 210 272 155 216 5.57e-16 77.8
Msa1048350 MtrunA17_Chr4g0071521 43.678 87 41 2 200 280 226 310 5.77e-16 79.3
Msa1048350 MtrunA17_Chr3g0129321 46.479 71 37 1 202 272 105 174 6.85e-16 76.6
Msa1048350 MtrunA17_Chr7g0248691 40.659 91 51 1 198 285 134 224 1.57e-15 78.2
Msa1048350 MtrunA17_Chr8g0348311 40.659 91 51 1 198 285 135 225 2.29e-15 77.8
Msa1048350 MtrunA17_Chr2g0289181 50.877 57 28 0 216 272 15 71 3.06e-15 75.5
Msa1048350 MtrunA17_Chr2g0284321 51.667 60 29 0 215 274 35 94 3.51e-15 75.1
Msa1048350 MtrunA17_Chr7g0238921 48.611 72 35 2 202 272 110 180 4.27e-15 76.6
Msa1048350 MtrunA17_Chr2g0319961 45.946 74 40 0 206 279 71 144 7.04e-15 75.1
Msa1048350 MtrunA17_Chr8g0387501 38.372 86 53 0 213 298 127 212 2.21e-14 73.9
Msa1048350 MtrunA17_Chr6g0485431 48.649 74 36 2 202 274 141 213 8.70e-14 73.2
Msa1048350 MtrunA17_Chr1g0202461 41.304 92 49 2 186 272 227 318 7.84e-13 70.5
Msa1048350 MtrunA17_Chr5g0432071 48.276 58 28 2 215 272 104 159 1.00e-11 64.7
Msa1048350 MtrunA17_Chr8g0387981 45.205 73 37 2 200 270 118 189 2.58e-11 65.5
Msa1048350 MtrunA17_Chr3g0126391 44.595 74 38 2 199 270 118 190 2.64e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048350 AT5G15130.1 37.542 594 256 20 5 556 10 530 5.71e-81 265
Msa1048350 AT5G15130.2 38.448 554 233 19 45 556 1 488 1.33e-78 257
Msa1048350 AT1G18860.1 37.378 511 235 16 25 479 29 510 6.14e-66 224
Msa1048350 AT1G68150.1 40.000 300 123 8 44 330 100 355 1.11e-53 187
Msa1048350 AT4G04450.2 36.522 345 170 8 34 362 11 322 2.96e-53 187
Msa1048350 AT4G04450.1 36.522 345 170 8 34 362 105 416 4.43e-52 187
Msa1048350 AT1G69810.1 37.026 343 169 9 31 364 19 323 1.41e-45 166
Msa1048350 AT1G62300.1 38.176 296 137 9 6 299 145 396 1.75e-41 158
Msa1048350 AT4G01720.1 39.407 236 100 8 42 274 103 298 1.61e-40 154
Msa1048350 AT4G22070.4 33.808 281 99 7 42 274 115 356 9.63e-39 150
Msa1048350 AT4G22070.3 33.808 281 99 7 42 274 115 356 9.63e-39 150
Msa1048350 AT4G22070.2 33.808 281 99 7 42 274 115 356 9.63e-39 150
Msa1048350 AT4G22070.1 33.808 281 99 7 42 274 115 356 9.63e-39 150
Msa1048350 AT1G69810.2 38.889 270 119 8 103 364 34 265 9.44e-36 137
Msa1048350 AT4G31800.2 66.667 60 20 0 213 272 109 168 3.14e-25 105
Msa1048350 AT4G31800.1 66.667 60 20 0 213 272 174 233 4.00e-25 106
Msa1048350 AT2G25000.2 63.636 66 23 1 208 272 95 160 5.92e-24 100
Msa1048350 AT2G25000.4 63.636 66 23 1 208 272 95 160 5.92e-24 100
Msa1048350 AT2G25000.3 63.636 66 23 1 208 272 117 182 1.16e-23 100
Msa1048350 AT2G25000.1 63.636 66 23 1 208 272 138 203 1.27e-23 101
Msa1048350 AT1G80840.1 53.333 75 35 0 200 274 131 205 1.87e-23 101
Msa1048350 AT2G38470.1 41.406 128 62 3 202 318 349 474 1.13e-22 102
Msa1048350 AT2G38470.1 51.724 58 26 2 216 273 185 240 5.58e-12 68.9
Msa1048350 AT1G29860.1 39.024 123 70 2 171 293 92 209 3.40e-22 97.4
Msa1048350 AT5G56270.1 44.545 110 57 2 202 311 474 579 4.07e-22 101
Msa1048350 AT4G26640.5 37.908 153 73 5 191 329 180 324 8.31e-22 98.2
Msa1048350 AT4G26640.5 46.377 69 33 3 207 273 25 91 4.60e-11 65.5
Msa1048350 AT4G26640.6 37.908 153 73 5 191 329 180 324 8.31e-22 98.2
Msa1048350 AT4G26640.6 46.377 69 33 3 207 273 25 91 4.60e-11 65.5
Msa1048350 AT4G26640.4 37.908 153 73 5 191 329 180 324 8.31e-22 98.2
Msa1048350 AT4G26640.4 46.377 69 33 3 207 273 25 91 4.60e-11 65.5
Msa1048350 AT4G26640.3 37.908 153 73 5 191 329 180 324 8.31e-22 98.2
Msa1048350 AT4G26640.3 46.377 69 33 3 207 273 25 91 4.60e-11 65.5
Msa1048350 AT5G49520.1 37.313 134 68 3 199 319 205 335 1.39e-21 97.8
Msa1048350 AT4G26640.1 37.908 153 73 5 191 329 284 428 2.36e-21 97.8
Msa1048350 AT4G26640.1 46.377 69 33 3 207 273 129 195 6.07e-11 65.5
Msa1048350 AT4G26640.7 37.908 153 73 5 191 329 316 460 2.44e-21 98.2
Msa1048350 AT4G26640.7 46.377 69 33 3 207 273 161 227 5.84e-11 65.5
Msa1048350 AT4G26640.2 37.908 153 73 5 191 329 356 500 3.34e-21 97.8
Msa1048350 AT4G26640.2 46.377 69 33 3 207 273 201 267 7.24e-11 65.5
Msa1048350 AT5G41570.1 48.235 85 43 1 191 275 74 157 6.02e-21 90.9
Msa1048350 AT5G26170.1 34.667 150 77 4 139 272 25 169 9.91e-21 90.1
Msa1048350 AT1G13960.2 49.438 89 38 2 192 274 227 314 1.07e-20 94.4
Msa1048350 AT1G13960.2 51.562 64 28 3 209 272 71 131 3.70e-12 68.6
Msa1048350 AT1G13960.1 49.438 89 38 2 192 274 380 467 1.29e-20 95.9
Msa1048350 AT1G13960.1 51.562 64 28 3 209 272 224 284 2.67e-12 69.7
Msa1048350 AT2G46130.1 55.556 72 31 1 202 273 17 87 2.44e-20 87.0
Msa1048350 AT2G04880.2 49.412 85 38 2 194 274 258 341 2.64e-20 94.4
Msa1048350 AT2G04880.2 51.667 60 27 2 214 273 110 167 1.95e-12 70.1
Msa1048350 AT2G03340.1 39.098 133 46 4 202 333 402 500 3.12e-20 94.7
Msa1048350 AT2G03340.1 53.030 66 28 3 209 274 245 307 2.57e-13 73.2
Msa1048350 AT2G04880.1 49.412 85 38 2 194 274 282 365 3.22e-20 94.4
Msa1048350 AT2G04880.1 51.667 60 27 2 214 273 110 167 2.20e-12 70.1
Msa1048350 AT1G64000.1 51.351 74 35 1 202 275 101 173 3.86e-20 89.0
Msa1048350 AT1G29280.1 48.810 84 42 1 196 279 56 138 4.16e-20 90.9
Msa1048350 AT1G55600.1 45.977 87 42 2 191 273 279 364 4.64e-20 94.0
Msa1048350 AT5G13080.1 47.297 74 38 1 202 275 54 126 5.21e-20 87.0
Msa1048350 AT4G26440.1 32.645 242 134 10 164 398 325 544 9.30e-20 93.6
Msa1048350 AT3G01080.1 53.521 71 32 1 202 272 293 362 2.37e-19 91.3
Msa1048350 AT4G18170.1 47.561 82 42 1 193 274 150 230 2.43e-19 89.7
Msa1048350 AT3G01080.2 53.521 71 32 1 202 272 331 400 2.44e-19 91.7
Msa1048350 AT5G46350.1 42.105 95 54 1 202 296 170 263 4.54e-19 89.0
Msa1048350 AT5G07100.2 50.649 77 37 1 198 274 124 199 4.58e-19 86.7
Msa1048350 AT5G07100.4 50.649 77 37 1 198 274 124 199 4.58e-19 86.7
Msa1048350 AT5G07100.5 50.649 77 37 1 198 274 124 199 4.58e-19 86.7
Msa1048350 AT5G07100.3 50.649 77 37 1 198 274 124 199 4.58e-19 86.7
Msa1048350 AT2G23320.1 61.017 59 23 0 216 274 241 299 5.31e-19 88.6
Msa1048350 AT5G07100.1 52.000 75 35 1 198 272 217 290 6.88e-19 88.2
Msa1048350 AT4G30935.1 38.938 113 64 2 197 309 313 420 9.00e-19 89.7
Msa1048350 AT1G69310.4 51.351 74 35 1 199 272 131 203 1.96e-18 86.3
Msa1048350 AT1G69310.2 51.351 74 35 1 199 272 131 203 1.96e-18 86.3
Msa1048350 AT1G69310.1 51.351 74 35 1 199 272 131 203 1.96e-18 86.3
Msa1048350 AT2G47260.1 41.584 101 54 2 199 295 158 257 2.16e-18 87.0
Msa1048350 AT5G64810.1 47.887 71 36 1 202 272 97 166 2.33e-18 84.0
Msa1048350 AT2G30250.1 50.649 77 37 1 198 274 311 386 2.81e-18 87.8
Msa1048350 AT2G30590.1 50.000 80 32 2 200 273 294 371 7.26e-18 86.3
Msa1048350 AT3G04670.1 55.385 65 28 1 220 284 267 330 7.59e-18 85.5
Msa1048350 AT4G24240.1 45.349 86 43 1 200 281 262 347 1.43e-17 85.1
Msa1048350 AT2G44745.1 49.296 71 35 1 202 272 132 201 2.10e-17 82.0
Msa1048350 AT5G28650.1 53.846 65 29 1 220 284 267 330 2.48e-17 84.0
Msa1048350 AT2G37260.3 58.065 62 25 1 213 274 267 327 5.19e-17 83.2
Msa1048350 AT2G37260.3 54.386 57 24 2 216 272 86 140 1.42e-12 69.7
Msa1048350 AT2G37260.2 58.065 62 25 1 213 274 265 325 5.73e-17 83.2
Msa1048350 AT2G37260.2 54.386 57 24 2 216 272 84 138 1.56e-12 69.7
Msa1048350 AT2G37260.1 58.065 62 25 1 213 274 347 407 1.00e-16 83.2
Msa1048350 AT2G37260.1 54.386 57 24 2 216 272 166 220 1.97e-12 70.1
Msa1048350 AT2G24570.1 45.545 101 47 4 199 297 227 321 1.43e-16 81.6
Msa1048350 AT4G31550.1 51.316 76 33 3 199 272 230 303 1.47e-16 81.6
Msa1048350 AT4G31550.2 51.316 76 33 3 199 272 229 302 1.58e-16 81.3
Msa1048350 AT4G39410.1 47.887 71 36 1 202 272 210 279 3.15e-16 80.1
Msa1048350 AT3G62340.1 50.000 72 35 1 202 273 105 175 3.35e-16 79.7
Msa1048350 AT3G01970.1 46.479 71 37 1 202 272 52 121 5.15e-16 75.9
Msa1048350 AT1G30650.1 49.254 67 34 0 216 282 218 284 1.25e-15 79.7
Msa1048350 AT2G46130.2 51.389 72 30 2 202 273 17 83 1.80e-15 72.8
Msa1048350 AT3G58710.1 55.000 60 27 0 215 274 71 130 2.06e-15 77.4
Msa1048350 AT3G58710.2 55.000 60 27 0 215 274 70 129 2.09e-15 77.0
Msa1048350 AT2G34830.1 49.254 67 34 0 216 282 216 282 2.59e-15 79.0
Msa1048350 AT2G34830.2 49.254 67 34 0 216 282 225 291 2.92e-15 79.0
Msa1048350 AT4G01250.1 46.479 71 38 0 215 285 128 198 4.85e-15 76.6
Msa1048350 AT5G52830.1 48.571 70 36 0 216 285 166 235 2.23e-14 75.1
Msa1048350 AT2G21900.1 46.667 60 31 1 214 273 108 166 2.37e-14 72.4
Msa1048350 AT4G23550.1 42.857 77 44 0 214 290 139 215 4.26e-14 73.9
Msa1048350 AT4G31800.3 65.000 40 14 0 213 252 174 213 4.92e-14 72.4
Msa1048350 AT1G69310.3 47.297 74 34 2 199 272 131 199 1.27e-13 72.0
Msa1048350 AT5G43290.1 47.222 72 36 2 202 272 100 170 2.22e-13 71.2
Msa1048350 AT5G45050.4 38.043 92 57 0 216 307 1042 1133 1.04e-12 72.0
Msa1048350 AT5G45050.1 37.634 93 58 0 215 307 1180 1272 1.06e-12 72.0
Msa1048350 AT5G45050.2 37.634 93 58 0 215 307 1152 1244 1.20e-12 71.6
Msa1048350 AT5G24110.1 43.836 73 38 2 200 270 99 170 2.32e-12 68.6
Msa1048350 AT1G66560.1 47.761 67 33 1 206 270 94 160 7.06e-11 63.2
Msa1048350 AT2G40740.1 51.724 58 26 1 215 270 173 230 9.42e-11 63.5

Find 99 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAACAATTCCACATCTTT+TGG 0.160553 7_2:+10005686 Msa1048350:CDS
AACAATAGTAACAATAAATT+AGG 0.179687 7_2:+10005959 Msa1048350:CDS
TCTTTCTCTTTAGGTTTGTT+AGG 0.187408 7_2:-10003491 None:intergenic
AACAATTTGTTGAATCAAAA+TGG 0.213590 7_2:+10006292 Msa1048350:CDS
TCCATATCTTCTTTCTCTTT+AGG 0.253785 7_2:-10003500 None:intergenic
GATGATATTGGTGTGAAATT+TGG 0.273603 7_2:-10005929 None:intergenic
TTGTTGGAAACAAGTTATTA+TGG 0.281677 7_2:-10005802 None:intergenic
GCTTCTTTCTTATACTCATT+TGG 0.300183 7_2:-10003452 None:intergenic
GTACATACCTGTTTCCTAAC+TGG 0.308392 7_2:-10004592 None:intergenic
AATTCTTCTGAGCTATTCAT+TGG 0.315815 7_2:-10003590 None:intergenic
GAAGTTGAAGTTGAAGAAAA+AGG 0.324758 7_2:+10003620 Msa1048350:CDS
GGATGTCAATGGAGGAAATA+TGG 0.344144 7_2:+10004502 Msa1048350:CDS
GAAAATAGAGACAATGGTTT+AGG 0.349471 7_2:+10006223 Msa1048350:CDS
GTGTTCTTGATTGTTCAAAT+TGG 0.364271 7_2:-10005751 None:intergenic
GCTGCAGTTTCGTCGATTGT+AGG 0.370957 7_2:+10006169 Msa1048350:CDS
ACAATAGTAACAATAAATTA+GGG 0.371027 7_2:+10005960 Msa1048350:CDS
TCTTCAACTTCAACTTCCTT+TGG 0.371657 7_2:-10003614 None:intergenic
CTGCTCTTAGAAACAGAAAA+TGG 0.375936 7_2:-10006406 None:intergenic
ACATGTCATCAGCACATCTT+TGG 0.377350 7_2:-10005511 None:intergenic
AGATTATTTGGAGAAAATCT+TGG 0.380872 7_2:-10005884 None:intergenic
CTTTCTCTTTAGGTTTGTTA+GGG 0.381231 7_2:-10003490 None:intergenic
AACCCCTTCAAGGCAAGCTT+TGG 0.383268 7_2:+10006090 Msa1048350:CDS
TGGATTAGACTCTAAATATA+TGG 0.384134 7_2:+10003538 Msa1048350:CDS
TTAGCCTGTGAACTTCTTGT+TGG 0.385569 7_2:-10006355 None:intergenic
TCACACCAATATCATCCATT+TGG 0.393132 7_2:+10005936 Msa1048350:CDS
GCAGCATCAATGATGGTATC+AGG 0.396478 7_2:+10005617 Msa1048350:CDS
ACCTAAAGAGAAAGAAGATA+TGG 0.399352 7_2:+10003499 Msa1048350:CDS
TCAGCCAAAGCTTGCCTTGA+AGG 0.406538 7_2:-10006094 None:intergenic
AATCAACTTCAACTACTTCA+TGG 0.411021 7_2:-10002003 None:intergenic
TTGTTCCAAATGGATGATAT+TGG 0.424842 7_2:-10005941 None:intergenic
ATTGTTACTATTGTTCCAAA+TGG 0.426970 7_2:-10005951 None:intergenic
AGAGACAATGGTTTAGGTGC+AGG 0.428854 7_2:+10006229 Msa1048350:CDS
TGAAGGGATCATACTTCAAA+AGG 0.439449 7_2:+10006326 Msa1048350:CDS
CAAGTTATCAAACCCCTTCA+AGG 0.448201 7_2:+10006080 Msa1048350:CDS
TCATCAAACATTGCTTCAAA+TGG 0.448886 7_2:+10005860 Msa1048350:CDS
TAGAGTCTAATCCAAGACTT+AGG 0.454455 7_2:-10003529 None:intergenic
GTTAGGTCAAGAGTGATTGT+TGG 0.454975 7_2:-10005818 None:intergenic
AAATTGTTTGAAACCATTTG+AGG 0.460922 7_2:-10006277 None:intergenic
CAGCCAAAGCTTGCCTTGAA+GGG 0.463069 7_2:-10006093 None:intergenic
TTGCACCAGCATGCCCAGTT+AGG 0.463809 7_2:+10004578 Msa1048350:CDS
ATGGAAGTTAACCTAAGTCT+TGG 0.464788 7_2:+10003518 Msa1048350:CDS
AGCATGCCCAGTTAGGAAAC+AGG 0.467255 7_2:+10004585 Msa1048350:CDS
GGAAACAAGTTATTATGGTT+TGG 0.467619 7_2:-10005797 None:intergenic
CGATAGTATGCTCTTGGACA+TGG 0.469854 7_2:-10004547 None:intergenic
TTGATATTGTTAACAATGGA+TGG 0.469868 7_2:-10006442 None:intergenic
ACTTGGTGAGTATCCTCAAA+TGG 0.474336 7_2:+10006264 Msa1048350:CDS
AGCAATGTTTGATGATGATA+AGG 0.475336 7_2:-10005852 None:intergenic
AAAATGTTCTAAAGAGGAGA+TGG 0.475523 7_2:+10003235 Msa1048350:CDS
ATAAGGATGAAGGAGAAGTT+AGG 0.476278 7_2:-10005835 None:intergenic
TATGGACAAAAGATAGCAAA+AGG 0.482613 7_2:+10004520 Msa1048350:CDS
GTGCAACGATAGTATGCTCT+TGG 0.484000 7_2:-10004553 None:intergenic
AACAAGTTATTATGGTTTGG+TGG 0.484846 7_2:-10005794 None:intergenic
GAAACAGAAAATGGCAATGA+AGG 0.491332 7_2:-10006397 None:intergenic
AAATGGTAAAGGATGCTTGA+AGG 0.499468 7_2:+10006309 Msa1048350:CDS
TGTTAACGATGTCAAAGAAA+CGG 0.508949 7_2:-10003334 None:intergenic
TTGTTGAATCAAAATGGTAA+AGG 0.509980 7_2:+10006298 Msa1048350:CDS
TGTTTCCTAACTGGGCATGC+TGG 0.511634 7_2:-10004583 None:intergenic
ATCTTAATCACAACATATGA+AGG 0.513101 7_2:+10005536 Msa1048350:CDS
CAAACTAAAATGTTCTAAAG+AGG 0.515514 7_2:+10003229 Msa1048350:CDS
AATGGTAAAGGATGCTTGAA+GGG 0.515986 7_2:+10006310 Msa1048350:CDS
TACATACCTGTTTCCTAACT+GGG 0.518574 7_2:-10004591 None:intergenic
GGAATGAAGAAATGTTGCTT+TGG 0.521858 7_2:-10005773 None:intergenic
TGTCAAAGAAACGGAGCTGA+AGG 0.529505 7_2:-10003325 None:intergenic
ACTCATTTGGACTTCTTCCA+AGG 0.530874 7_2:-10003439 None:intergenic
TTCAGCTGCAGCATCAATGA+TGG 0.531666 7_2:+10005610 Msa1048350:CDS
GAGTTTGTGTCACTTTGCCT+TGG 0.535145 7_2:+10003422 Msa1048350:CDS
TCTTTCAAACAGATGAATGA+TGG 0.537675 7_2:+10004481 Msa1048350:intron
ATTGTTGATATTGTTAACAA+TGG 0.540285 7_2:-10006446 None:intergenic
GCAGGGTTGAATTTGAAACT+TGG 0.541526 7_2:+10006247 Msa1048350:CDS
GAGACAATGGTTTAGGTGCA+GGG 0.543859 7_2:+10006230 Msa1048350:CDS
TTTAGACCATTGATTTGTGT+TGG 0.547844 7_2:-10005716 None:intergenic
AACTCACCAACACAAATCAA+TGG 0.553112 7_2:+10005710 Msa1048350:CDS
TCTTCAATCTCTGAACTGCT+AGG 0.554571 7_2:-10001959 None:intergenic
GTCACCAACAAGAAGTTCAC+AGG 0.558090 7_2:+10006351 Msa1048350:CDS
AAGGCAAAGTGACACAAACT+CGG 0.562482 7_2:-10003420 None:intergenic
TGTGAAATTTGGTTGTTGTG+TGG 0.564092 7_2:-10005918 None:intergenic
TTTGATGATGATAAGGATGA+AGG 0.564477 7_2:-10005845 None:intergenic
AGCCAAAGCTTGCCTTGAAG+GGG 0.565025 7_2:-10006092 None:intergenic
AGATGAATGATGGATGTCAA+TGG 0.566197 7_2:+10004491 Msa1048350:intron
GCTATAACTGAATGAAGACT+TGG 0.566497 7_2:-10006145 None:intergenic
TGATTGCTCTACTGAACAAG+AGG 0.569404 7_2:+10002021 Msa1048350:CDS
AAATGTTCTAAAGAGGAGAT+GGG 0.587148 7_2:+10003236 Msa1048350:CDS
CAAGAAGAAAATAGAGACAA+TGG 0.587262 7_2:+10006217 Msa1048350:CDS
GCTGATGCTGTTACTTGAAG+AGG 0.588967 7_2:-10005572 None:intergenic
ATATTGTTAACAATGGATGG+AGG 0.596810 7_2:-10006439 None:intergenic
CTCTAAATATATGGTACCAA+CGG 0.598516 7_2:+10003547 Msa1048350:CDS
TGGTGAGTTTCCAAAAGATG+TGG 0.607185 7_2:-10005696 None:intergenic
AGCTGAAGTTGTGTATGCCA+TGG 0.611049 7_2:-10005594 None:intergenic
TACTGAACAAGAGGTTACAA+AGG 0.612360 7_2:+10002030 Msa1048350:CDS
GGACAAGGATCAAACAATGG+TGG 0.624982 7_2:+10006190 Msa1048350:CDS
AAATCAGATACTAACTCCGT+TGG 0.628268 7_2:-10003563 None:intergenic
TCAAGTAACAGCATCAGCCA+TGG 0.634105 7_2:+10005577 Msa1048350:CDS
GTCAAAGAAACGGAGCTGAA+GGG 0.636998 7_2:-10003324 None:intergenic
AGCTAAATGTGATACTCCCA+CGG 0.647058 7_2:+10003739 Msa1048350:CDS
AGGCAAAGTGACACAAACTC+GGG 0.648244 7_2:-10003419 None:intergenic
GTTTCGTCGATTGTAGGACA+AGG 0.650226 7_2:+10006175 Msa1048350:CDS
TAGCTCAGAAGAATTACCAA+AGG 0.660407 7_2:+10003598 Msa1048350:CDS
GTAGGACAAGGATCAAACAA+TGG 0.686881 7_2:+10006187 Msa1048350:CDS
TGAATGATGGATGTCAATGG+AGG 0.707535 7_2:+10004494 Msa1048350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAATAAATAGTTAA+GGG - chr7_2:10002624-10002643 None:intergenic 10.0%
!! AGAAATATTGAAATTTAATT+CGG + chr7_2:10003896-10003915 Msa1048350:intron 10.0%
!!! CATAATTGTTTTTATTTTTT+TGG + chr7_2:10004171-10004190 Msa1048350:intron 10.0%
!! ATTGTCAAAAAATAAAATAA+GGG - chr7_2:10004408-10004427 None:intergenic 10.0%
!! ACTATACAATAATATAAATA+AGG - chr7_2:10005427-10005446 None:intergenic 10.0%
!!! TTTTCTAGTTTCAAATTTAT+TGG + chr7_2:10002283-10002302 Msa1048350:intron 15.0%
!! AATTAGTATTAATGTTTCAT+TGG - chr7_2:10002590-10002609 None:intergenic 15.0%
!! GAGAAAATAATAAATAGTTA+AGG - chr7_2:10002625-10002644 None:intergenic 15.0%
!! TAATATTATTAATACTACCA+TGG + chr7_2:10003188-10003207 Msa1048350:intron 15.0%
!!! TCTAAATCGTATTTATTTTA+TGG + chr7_2:10004199-10004218 Msa1048350:intron 15.0%
!!! CTAAATCGTATTTATTTTAT+GGG + chr7_2:10004200-10004219 Msa1048350:intron 15.0%
!! GATTGTCAAAAAATAAAATA+AGG - chr7_2:10004409-10004428 None:intergenic 15.0%
!!! AATTTAGTCAATTTGTTTAT+AGG - chr7_2:10004656-10004675 None:intergenic 15.0%
!!! AACAAATTGACTAAATTTTA+TGG + chr7_2:10004659-10004678 Msa1048350:intron 15.0%
!!! TTTTTTTGCTTTCAAAATAT+CGG - chr7_2:10005365-10005384 None:intergenic 15.0%
!! AACAATAGTAACAATAAATT+AGG + chr7_2:10005959-10005978 Msa1048350:CDS 15.0%
!! ACAATAGTAACAATAAATTA+GGG + chr7_2:10005960-10005979 Msa1048350:CDS 15.0%
!!! TTGATGATTTGTTATGTATA+AGG + chr7_2:10002151-10002170 Msa1048350:intron 20.0%
!! ACAAAATTGTCCTTAATAAA+TGG - chr7_2:10002680-10002699 None:intergenic 20.0%
!!! AAATGCAATTAATTTTGTGT+AGG - chr7_2:10002726-10002745 None:intergenic 20.0%
!!! TACATATAATTTGAAACAGA+GGG + chr7_2:10002782-10002801 Msa1048350:intron 20.0%
!! GAAGACAATTATAACTATTA+AGG - chr7_2:10002873-10002892 None:intergenic 20.0%
!! GAAGACAATTATAACTATTA+AGG - chr7_2:10002873-10002892 None:intergenic 20.0%
!!! GTCTTTATTAATCTTTTGTA+CGG + chr7_2:10003076-10003095 Msa1048350:intron 20.0%
!!! TCTAAATAATGTTTTTCTAG+TGG - chr7_2:10003879-10003898 None:intergenic 20.0%
!! ATAAAAATTCGACATAAAGA+TGG - chr7_2:10004110-10004129 None:intergenic 20.0%
!!! TAAACATAGAAACTTTTTCT+TGG - chr7_2:10004342-10004361 None:intergenic 20.0%
!! TAACAAGAGTAAAAAAAATG+TGG + chr7_2:10004720-10004739 Msa1048350:intron 20.0%
!! TAAGATAAATACAACAATTG+TGG - chr7_2:10004811-10004830 None:intergenic 20.0%
!! ATCTTAATGTATTAAGAACT+AGG + chr7_2:10004825-10004844 Msa1048350:intron 20.0%
!!! TGGTTTAATTAGTTTAACTA+TGG + chr7_2:10004888-10004907 Msa1048350:intron 20.0%
!! ATTCAACCAATTAAATCTAT+CGG + chr7_2:10005048-10005067 Msa1048350:intron 20.0%
!!! TGAAATCATGTAAAATTTTG+GGG - chr7_2:10005488-10005507 None:intergenic 20.0%
!!! CTGAAATCATGTAAAATTTT+GGG - chr7_2:10005489-10005508 None:intergenic 20.0%
!! GAACAAAAACTAAGATTATT+TGG - chr7_2:10005899-10005918 None:intergenic 20.0%
!!! CTTGTGTTTTTTCAATATTA+GGG - chr7_2:10006006-10006025 None:intergenic 20.0%
!!! ACTTGTGTTTTTTCAATATT+AGG - chr7_2:10006007-10006026 None:intergenic 20.0%
!! ATATTGAAAAAACACAAGTT+AGG + chr7_2:10006008-10006027 Msa1048350:CDS 20.0%
!!! TTTTCTTGGAAATGATTAAA+AGG - chr7_2:10006034-10006053 None:intergenic 20.0%
!!! GATTTTGATAGAAATTTTCT+TGG - chr7_2:10006048-10006067 None:intergenic 20.0%
!!! AACAATTTGTTGAATCAAAA+TGG + chr7_2:10006292-10006311 Msa1048350:CDS 20.0%
!! ATTGTTGATATTGTTAACAA+TGG - chr7_2:10006449-10006468 None:intergenic 20.0%
! AGAAAAAATTAGTGAGGATT+AGG - chr7_2:10002067-10002086 None:intergenic 25.0%
!! TATAGAGATTGTTTGAGTTT+AGG + chr7_2:10002318-10002337 Msa1048350:intron 25.0%
!! ATATGTACAATAAGTGTTGT+AGG + chr7_2:10002345-10002364 Msa1048350:intron 25.0%
!!! GAGACAATTTATTTTCCAAA+GGG - chr7_2:10002543-10002562 None:intergenic 25.0%
!!! TGAGACAATTTATTTTCCAA+AGG - chr7_2:10002544-10002563 None:intergenic 25.0%
! CTTTCTCATACCATTTATTA+AGG + chr7_2:10002667-10002686 Msa1048350:intron 25.0%
!! CTACATATAATTTGAAACAG+AGG + chr7_2:10002781-10002800 Msa1048350:intron 25.0%
! TCTTGTTCATATGTTATAGT+TGG + chr7_2:10002972-10002991 Msa1048350:intron 25.0%
!!! CAAACTAAAATGTTCTAAAG+AGG + chr7_2:10003229-10003248 Msa1048350:CDS 25.0%
!! TGGATTAGACTCTAAATATA+TGG + chr7_2:10003538-10003557 Msa1048350:CDS 25.0%
! AACTTACTATCTTGTATTCT+AGG + chr7_2:10003839-10003858 Msa1048350:intron 25.0%
! AGAAAAAGTTAAAATAGCGA+TGG + chr7_2:10003983-10004002 Msa1048350:intron 25.0%
! CCAATTAAACTATAATCCAA+AGG - chr7_2:10004871-10004890 None:intergenic 25.0%
! CCTTTGGATTATAGTTTAAT+TGG + chr7_2:10004868-10004887 Msa1048350:intron 25.0%
! AAAAAAAGTTGAATCTATCG+TGG + chr7_2:10004957-10004976 Msa1048350:intron 25.0%
! TTTGAACCGATAGATTTAAT+TGG - chr7_2:10005057-10005076 None:intergenic 25.0%
! ATAAGTTGTTCAATACAATG+AGG + chr7_2:10005202-10005221 Msa1048350:intron 25.0%
!! CCTGAAATCATGTAAAATTT+TGG - chr7_2:10005490-10005509 None:intergenic 25.0%
!! CCAAAATTTTACATGATTTC+AGG + chr7_2:10005487-10005506 Msa1048350:intron 25.0%
! ATCTTAATCACAACATATGA+AGG + chr7_2:10005536-10005555 Msa1048350:CDS 25.0%
! TTGTTGGAAACAAGTTATTA+TGG - chr7_2:10005805-10005824 None:intergenic 25.0%
! AGATTATTTGGAGAAAATCT+TGG - chr7_2:10005887-10005906 None:intergenic 25.0%
! ATTGTTACTATTGTTCCAAA+TGG - chr7_2:10005954-10005973 None:intergenic 25.0%
!! AAATTGTTTGAAACCATTTG+AGG - chr7_2:10006280-10006299 None:intergenic 25.0%
! TTGTTGAATCAAAATGGTAA+AGG + chr7_2:10006298-10006317 Msa1048350:CDS 25.0%
! TTGATATTGTTAACAATGGA+TGG - chr7_2:10006445-10006464 None:intergenic 25.0%
!!! CAATATCAACAATTTTGATC+TGG + chr7_2:10006456-10006475 Msa1048350:CDS 25.0%
AATCAACTTCAACTACTTCA+TGG - chr7_2:10002006-10002025 None:intergenic 30.0%
AAATTAGTGAGGATTAGGAT+TGG - chr7_2:10002062-10002081 None:intergenic 30.0%
TGCACAAGAAAAAATTAGTG+AGG - chr7_2:10002073-10002092 None:intergenic 30.0%
!!! AAGAAGTTTTGTTGTTGTAG+AGG - chr7_2:10002265-10002284 None:intergenic 30.0%
AAGGGACTTATAATTTGGAA+GGG - chr7_2:10002525-10002544 None:intergenic 30.0%
AAAGGGACTTATAATTTGGA+AGG - chr7_2:10002526-10002545 None:intergenic 30.0%
TTCCAAATTATAAGTCCCTT+TGG + chr7_2:10002525-10002544 Msa1048350:intron 30.0%
TTCCAAAGGGACTTATAATT+TGG - chr7_2:10002530-10002549 None:intergenic 30.0%
ACACACAAAACTATAACACT+AGG - chr7_2:10003138-10003157 None:intergenic 30.0%
!! AAAATGTTCTAAAGAGGAGA+TGG + chr7_2:10003235-10003254 Msa1048350:CDS 30.0%
!! AAATGTTCTAAAGAGGAGAT+GGG + chr7_2:10003236-10003255 Msa1048350:CDS 30.0%
TGTTAACGATGTCAAAGAAA+CGG - chr7_2:10003337-10003356 None:intergenic 30.0%
GCTTCTTTCTTATACTCATT+TGG - chr7_2:10003455-10003474 None:intergenic 30.0%
!! CTTTCTCTTTAGGTTTGTTA+GGG - chr7_2:10003493-10003512 None:intergenic 30.0%
! TCTTTCTCTTTAGGTTTGTT+AGG - chr7_2:10003494-10003513 None:intergenic 30.0%
ACCTAAAGAGAAAGAAGATA+TGG + chr7_2:10003499-10003518 Msa1048350:CDS 30.0%
TCCATATCTTCTTTCTCTTT+AGG - chr7_2:10003503-10003522 None:intergenic 30.0%
CTCTAAATATATGGTACCAA+CGG + chr7_2:10003547-10003566 Msa1048350:CDS 30.0%
AATTCTTCTGAGCTATTCAT+TGG - chr7_2:10003593-10003612 None:intergenic 30.0%
GAAGTTGAAGTTGAAGAAAA+AGG + chr7_2:10003620-10003639 Msa1048350:CDS 30.0%
AATTAATCGATACTAACCGT+GGG - chr7_2:10003758-10003777 None:intergenic 30.0%
TAATTAATCGATACTAACCG+TGG - chr7_2:10003759-10003778 None:intergenic 30.0%
GGCCACTATATCATTAAAAT+CGG + chr7_2:10003917-10003936 Msa1048350:intron 30.0%
!! GACCGATTTTAATGATATAG+TGG - chr7_2:10003922-10003941 None:intergenic 30.0%
! GAGATGAATATTGCTTCTTT+TGG - chr7_2:10004019-10004038 None:intergenic 30.0%
!! TTTATTAACTTGTGCCCTAA+GGG - chr7_2:10004241-10004260 None:intergenic 30.0%
TCTTTCAAACAGATGAATGA+TGG + chr7_2:10004481-10004500 Msa1048350:intron 30.0%
TATGGACAAAAGATAGCAAA+AGG + chr7_2:10004520-10004539 Msa1048350:CDS 30.0%
!! TAATCCAAAGGTATCATCAT+TGG - chr7_2:10004859-10004878 None:intergenic 30.0%
GTTAAATTGTGATCAACCTT+CGG - chr7_2:10005003-10005022 None:intergenic 30.0%
!! TTTAGACCATTGATTTGTGT+TGG - chr7_2:10005719-10005738 None:intergenic 30.0%
GTGTTCTTGATTGTTCAAAT+TGG - chr7_2:10005754-10005773 None:intergenic 30.0%
! AACAAGTTATTATGGTTTGG+TGG - chr7_2:10005797-10005816 None:intergenic 30.0%
GGAAACAAGTTATTATGGTT+TGG - chr7_2:10005800-10005819 None:intergenic 30.0%
!! TTTGATGATGATAAGGATGA+AGG - chr7_2:10005848-10005867 None:intergenic 30.0%
!! AGCAATGTTTGATGATGATA+AGG - chr7_2:10005855-10005874 None:intergenic 30.0%
TCATCAAACATTGCTTCAAA+TGG + chr7_2:10005860-10005879 Msa1048350:CDS 30.0%
GATGATATTGGTGTGAAATT+TGG - chr7_2:10005932-10005951 None:intergenic 30.0%
TTGTTCCAAATGGATGATAT+TGG - chr7_2:10005944-10005963 None:intergenic 30.0%
CAAGAAGAAAATAGAGACAA+TGG + chr7_2:10006217-10006236 Msa1048350:CDS 30.0%
GAAAATAGAGACAATGGTTT+AGG + chr7_2:10006223-10006242 Msa1048350:CDS 30.0%
ATATTGTTAACAATGGATGG+AGG - chr7_2:10006442-10006461 None:intergenic 30.0%
TACTGAACAAGAGGTTACAA+AGG + chr7_2:10002030-10002049 Msa1048350:CDS 35.0%
ACGACGTAAAAAGATTCACA+GGG - chr7_2:10002488-10002507 None:intergenic 35.0%
AACGACGTAAAAAGATTCAC+AGG - chr7_2:10002489-10002508 None:intergenic 35.0%
TTATAACACACATGACAAGC+TGG - chr7_2:10002821-10002840 None:intergenic 35.0%
!!! CTACCATGGTTTTGAATTCT+AGG + chr7_2:10003202-10003221 Msa1048350:intron 35.0%
CTTCCTAGAATTCAAAACCA+TGG - chr7_2:10003208-10003227 None:intergenic 35.0%
ATGGAAGTTAACCTAAGTCT+TGG + chr7_2:10003518-10003537 Msa1048350:CDS 35.0%
TAGAGTCTAATCCAAGACTT+AGG - chr7_2:10003532-10003551 None:intergenic 35.0%
AAATCAGATACTAACTCCGT+TGG - chr7_2:10003566-10003585 None:intergenic 35.0%
TAGCTCAGAAGAATTACCAA+AGG + chr7_2:10003598-10003617 Msa1048350:CDS 35.0%
TCTTCAACTTCAACTTCCTT+TGG - chr7_2:10003617-10003636 None:intergenic 35.0%
!! GTTTATTAACTTGTGCCCTA+AGG - chr7_2:10004242-10004261 None:intergenic 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr7_2:10004491-10004510 Msa1048350:intron 35.0%
TACATACCTGTTTCCTAACT+GGG - chr7_2:10004594-10004613 None:intergenic 35.0%
!! ATCTGATTTTAAGTGACCGA+AGG + chr7_2:10004984-10005003 Msa1048350:intron 35.0%
AAATGAGGTAGCTTATAACC+TGG - chr7_2:10005275-10005294 None:intergenic 35.0%
GATCTTAGAGTTTGTGAAGT+GGG + chr7_2:10005305-10005324 Msa1048350:intron 35.0%
! CACAACAATTCCACATCTTT+TGG + chr7_2:10005686-10005705 Msa1048350:CDS 35.0%
AACTCACCAACACAAATCAA+TGG + chr7_2:10005710-10005729 Msa1048350:CDS 35.0%
! GGAATGAAGAAATGTTGCTT+TGG - chr7_2:10005776-10005795 None:intergenic 35.0%
ATAAGGATGAAGGAGAAGTT+AGG - chr7_2:10005838-10005857 None:intergenic 35.0%
TGTGAAATTTGGTTGTTGTG+TGG - chr7_2:10005921-10005940 None:intergenic 35.0%
TCACACCAATATCATCCATT+TGG + chr7_2:10005936-10005955 Msa1048350:CDS 35.0%
GCTATAACTGAATGAAGACT+TGG - chr7_2:10006148-10006167 None:intergenic 35.0%
AAATGGTAAAGGATGCTTGA+AGG + chr7_2:10006309-10006328 Msa1048350:CDS 35.0%
AATGGTAAAGGATGCTTGAA+GGG + chr7_2:10006310-10006329 Msa1048350:CDS 35.0%
TGAAGGGATCATACTTCAAA+AGG + chr7_2:10006326-10006345 Msa1048350:CDS 35.0%
GAAACAGAAAATGGCAATGA+AGG - chr7_2:10006400-10006419 None:intergenic 35.0%
CTGCTCTTAGAAACAGAAAA+TGG - chr7_2:10006409-10006428 None:intergenic 35.0%
TCTTCAATCTCTGAACTGCT+AGG - chr7_2:10001962-10001981 None:intergenic 40.0%
TGATTGCTCTACTGAACAAG+AGG + chr7_2:10002021-10002040 Msa1048350:CDS 40.0%
AAGGCAAAGTGACACAAACT+CGG - chr7_2:10003423-10003442 None:intergenic 40.0%
ACTCATTTGGACTTCTTCCA+AGG - chr7_2:10003442-10003461 None:intergenic 40.0%
! GAAACTCTGACTCTTTTAGC+AGG - chr7_2:10003713-10003732 None:intergenic 40.0%
AGCTAAATGTGATACTCCCA+CGG + chr7_2:10003739-10003758 Msa1048350:CDS 40.0%
TCATGTTATCTTGTGCCCTT+AGG + chr7_2:10004223-10004242 Msa1048350:intron 40.0%
CATGTTATCTTGTGCCCTTA+GGG + chr7_2:10004224-10004243 Msa1048350:intron 40.0%
TTTAAACTTGTGCCCCAAGT+TGG + chr7_2:10004365-10004384 Msa1048350:intron 40.0%
TTAAACTTGTGCCCCAAGTT+GGG + chr7_2:10004366-10004385 Msa1048350:intron 40.0%
!! TGAATGATGGATGTCAATGG+AGG + chr7_2:10004494-10004513 Msa1048350:CDS 40.0%
GGATGTCAATGGAGGAAATA+TGG + chr7_2:10004502-10004521 Msa1048350:CDS 40.0%
GTACATACCTGTTTCCTAAC+TGG - chr7_2:10004595-10004614 None:intergenic 40.0%
TGCACCAATGATGATACCTT+TGG + chr7_2:10004852-10004871 Msa1048350:intron 40.0%
ATAATTTGACAACCCCTACC+AGG + chr7_2:10005254-10005273 Msa1048350:intron 40.0%
AGGTAGCTTATAACCTGGTA+GGG - chr7_2:10005270-10005289 None:intergenic 40.0%
AGATCGACGACAAACAAATG+AGG - chr7_2:10005290-10005309 None:intergenic 40.0%
CGATCTTAGAGTTTGTGAAG+TGG + chr7_2:10005304-10005323 Msa1048350:intron 40.0%
ACATGTCATCAGCACATCTT+TGG - chr7_2:10005514-10005533 None:intergenic 40.0%
TGGTGAGTTTCCAAAAGATG+TGG - chr7_2:10005699-10005718 None:intergenic 40.0%
GTTAGGTCAAGAGTGATTGT+TGG - chr7_2:10005821-10005840 None:intergenic 40.0%
CAAGTTATCAAACCCCTTCA+AGG + chr7_2:10006080-10006099 Msa1048350:CDS 40.0%
GTAGGACAAGGATCAAACAA+TGG + chr7_2:10006187-10006206 Msa1048350:CDS 40.0%
! GCAGGGTTGAATTTGAAACT+TGG + chr7_2:10006247-10006266 Msa1048350:CDS 40.0%
! ACTTGGTGAGTATCCTCAAA+TGG + chr7_2:10006264-10006283 Msa1048350:CDS 40.0%
TTAGCCTGTGAACTTCTTGT+TGG - chr7_2:10006358-10006377 None:intergenic 40.0%
GTCAAAGAAACGGAGCTGAA+GGG - chr7_2:10003327-10003346 None:intergenic 45.0%
TGTCAAAGAAACGGAGCTGA+AGG - chr7_2:10003328-10003347 None:intergenic 45.0%
AGGCAAAGTGACACAAACTC+GGG - chr7_2:10003422-10003441 None:intergenic 45.0%
!! GAGTTTGTGTCACTTTGCCT+TGG + chr7_2:10003422-10003441 Msa1048350:CDS 45.0%
TAAACTTGTGCCCCAAGTTG+GGG + chr7_2:10004367-10004386 Msa1048350:intron 45.0%
!! TTAACTTGTGCCCCAACTTG+GGG - chr7_2:10004380-10004399 None:intergenic 45.0%
!! GTTAACTTGTGCCCCAACTT+GGG - chr7_2:10004381-10004400 None:intergenic 45.0%
!! TGTTAACTTGTGCCCCAACT+TGG - chr7_2:10004382-10004401 None:intergenic 45.0%
CGATAGTATGCTCTTGGACA+TGG - chr7_2:10004550-10004569 None:intergenic 45.0%
GTGCAACGATAGTATGCTCT+TGG - chr7_2:10004556-10004575 None:intergenic 45.0%
CATCTGACAAGTCTCTTGGT+TGG - chr7_2:10005025-10005044 None:intergenic 45.0%
TCAGCATCTGACAAGTCTCT+TGG - chr7_2:10005029-10005048 None:intergenic 45.0%
GGTAGCTTATAACCTGGTAG+GGG - chr7_2:10005269-10005288 None:intergenic 45.0%
GAGGTAGCTTATAACCTGGT+AGG - chr7_2:10005271-10005290 None:intergenic 45.0%
CTTAGAGTTTGTGAAGTGGG+TGG + chr7_2:10005308-10005327 Msa1048350:intron 45.0%
ATCGGTGTGTTCTATTCGCT+TGG - chr7_2:10005347-10005366 None:intergenic 45.0%
! GCTGATGCTGTTACTTGAAG+AGG - chr7_2:10005575-10005594 None:intergenic 45.0%
TCAAGTAACAGCATCAGCCA+TGG + chr7_2:10005577-10005596 Msa1048350:CDS 45.0%
AGCTGAAGTTGTGTATGCCA+TGG - chr7_2:10005597-10005616 None:intergenic 45.0%
TTCAGCTGCAGCATCAATGA+TGG + chr7_2:10005610-10005629 Msa1048350:CDS 45.0%
GCAGCATCAATGATGGTATC+AGG + chr7_2:10005617-10005636 Msa1048350:CDS 45.0%
! GTTTCGTCGATTGTAGGACA+AGG + chr7_2:10006175-10006194 Msa1048350:CDS 45.0%
GGACAAGGATCAAACAATGG+TGG + chr7_2:10006190-10006209 Msa1048350:CDS 45.0%
AGAGACAATGGTTTAGGTGC+AGG + chr7_2:10006229-10006248 Msa1048350:CDS 45.0%
GAGACAATGGTTTAGGTGCA+GGG + chr7_2:10006230-10006249 Msa1048350:CDS 45.0%
GTCACCAACAAGAAGTTCAC+AGG + chr7_2:10006351-10006370 Msa1048350:CDS 45.0%
!! TATATATATATATATATCTT+TGG - chr7_2:10005087-10005106 None:intergenic 5.0%
!!! TTTTTTTTTTTATGTTTATA+CGG - chr7_2:10005391-10005410 None:intergenic 5.0%
TGTTTCCTAACTGGGCATGC+TGG - chr7_2:10004586-10004605 None:intergenic 50.0%
AGCATGCCCAGTTAGGAAAC+AGG + chr7_2:10004585-10004604 Msa1048350:CDS 50.0%
AACCCCTTCAAGGCAAGCTT+TGG + chr7_2:10006090-10006109 Msa1048350:CDS 50.0%
AGCCAAAGCTTGCCTTGAAG+GGG - chr7_2:10006095-10006114 None:intergenic 50.0%
CAGCCAAAGCTTGCCTTGAA+GGG - chr7_2:10006096-10006115 None:intergenic 50.0%
TCAGCCAAAGCTTGCCTTGA+AGG - chr7_2:10006097-10006116 None:intergenic 50.0%
! GCTGCAGTTTCGTCGATTGT+AGG + chr7_2:10006169-10006188 Msa1048350:CDS 50.0%
TTGCACCAGCATGCCCAGTT+AGG + chr7_2:10004578-10004597 Msa1048350:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 10001950 10006498 10001950 ID=Msa1048350;Name=Msa1048350
chr7_2 mRNA 10001950 10006498 10001950 ID=Msa1048350-mRNA-1;Parent=Msa1048350;Name=Msa1048350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.75|1|1|4|0|580
chr7_2 exon 10001950 10002051 10001950 ID=Msa1048350-mRNA-1:exon:2619;Parent=Msa1048350-mRNA-1
chr7_2 exon 10003224 10003760 10003224 ID=Msa1048350-mRNA-1:exon:2620;Parent=Msa1048350-mRNA-1
chr7_2 exon 10004493 10004606 10004493 ID=Msa1048350-mRNA-1:exon:2621;Parent=Msa1048350-mRNA-1
chr7_2 exon 10005509 10006498 10005509 ID=Msa1048350-mRNA-1:exon:2622;Parent=Msa1048350-mRNA-1
chr7_2 CDS 10001950 10002051 10001950 ID=Msa1048350-mRNA-1:cds;Parent=Msa1048350-mRNA-1
chr7_2 CDS 10003224 10003760 10003224 ID=Msa1048350-mRNA-1:cds;Parent=Msa1048350-mRNA-1
chr7_2 CDS 10004493 10004606 10004493 ID=Msa1048350-mRNA-1:cds;Parent=Msa1048350-mRNA-1
chr7_2 CDS 10005509 10006498 10005509 ID=Msa1048350-mRNA-1:cds;Parent=Msa1048350-mRNA-1
Gene Sequence

>Msa1048350

ATGTCGAGTCCTAGCAGTTCAGAGATTGAAGAGAAAAGAGTTACTTCAATTATCCATGAAGTAGTTGAAGTTGATTGCTCTACTGAACAAGAGGTTACAAAGGAAGACAAACTAAAATGTTCTAAAGAGGAGATGGGTGACGTAAAAGAAGAAAACGAAAGATTGAAGACAATGCTATCTCGAGTTGAAAAAGATTACAACTCCCTTCAGCTCCGTTTCTTTGACATCGTTAACAAAGACGTTTCTATGAAAGATATAGAAGACTCATCAACTTCACACGAAGAAATCGACGAAGAACCCGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCAAAAAACATTGAAAACCCTAACAAACCTAAAGAGAAAGAAGATATGGAAGTTAACCTAAGTCTTGGATTAGACTCTAAATATATGGTACCAACGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAGCAATATTTTCAACAAATAAATCAACAAAAGTGATAAATGTAAATGATGAGATTTCAGAACTATTGCCTGCTAAAAGAGTCAGAGTTTCTGTGAGAGCTAAATGTGATACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTCCAAAGATGTGCTGATGACATGTCTATCTTAATCACAACATATGAAGGAACACACAATCATCCTCTTCAAGTAACAGCATCAGCCATGGCATACACAACTTCAGCTGCAGCATCAATGATGGTATCAGGTTCATCAACATCATCATCATCATCACATCAAAATCAAAATGTTCATCACAACAATTCCACATCTTTTGGAAACTCACCAACACAAATCAATGGTCTAAATTTCAATCATCACCAATTTGAACAATCAAGAACACCAAAGCAACATTTCTTCATTCCACCAAACCATAATAACTTGTTTCCAACAATCACTCTTGACCTAACTTCTCCTTCATCCTTATCATCATCAAACATTGCTTCAAATGGTCCAAGATTTTCTCCAAATAATCTTAGTTTTTGTTCCACACAACAACCAAATTTCACACCAATATCATCCATTTGGAACAATAGTAACAATAAATTAGGGTTTATTAACAATAACTCAAACCCTAATATTGAAAAAACACAAGTTAGGCCTTTTAATCATTTCCAAGAAAATTTCTATCAAAATCAAAATTGCATGACAAGTTATCAAACCCCTTCAAGGCAAGCTTTGGCTGAAACAATAAGCAAAGCAATAAGCACTGATCCAAGTCTTCATTCAGTTATAGCTGCTGCAGTTTCGTCGATTGTAGGACAAGGATCAAACAATGGTGGAAAGCAAGAAGAAAATAGAGACAATGGTTTAGGTGCAGGGTTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGTAAAGGATGCTTGAAGGGATCATACTTCAAAAGGTTGTCACCAACAAGAAGTTCACAGGCTAAAAATTTCATGCTTCTTCAACCTTCATTGCCATTTTCTGTTTCTAAGAGCAGTGCTAGTAAACCTCCATCCATTGTTAACAATATCAACAATTTTGATCTGGATAAGAACAAACATAATTAG
Protein sequence

>Msa1048350

MSSPSSSEIEEKRVTSIIHEVVEVDCSTEQEVTKEDKLKCSKEEMGDVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTSHEEIDEEPEFVSLCLGRSPNEYKKEAKNIENPNKPKEKEDMEVNLSLGLDSKYMVPTELVSDLSPMNSSEELPKEVEVEEKGAIFSTNKSTKVINVNDEISELLPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSGSSTSSSSSHQNQNVHHNNSTSFGNSPTQINGLNFNHHQFEQSRTPKQHFFIPPNHNNLFPTITLDLTSPSSLSSSNIASNGPRFSPNNLSFCSTQQPNFTPISSIWNNSNNKLGFINNNSNPNIEKTQVRPFNHFQENFYQNQNCMTSYQTPSRQALAETISKAISTDPSLHSVIAAAVSSIVGQGSNNGGKQEENRDNGLGAGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTRSSQAKNFMLLQPSLPFSVSKSSASKPPSIVNNINNFDLDKNKHN*