Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690750 | XP_003607400.2 | 94.161 | 274 | 13 | 2 | 1 | 274 | 1 | 271 | 0.0 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690750 | G7JRR4 | 94.161 | 274 | 13 | 2 | 1 | 274 | 1 | 271 | 0.0 | 510 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607050 | Msa0690750 | 0.810681 | 1.021408e-50 | -8.615850e-47 |
| Msa0690150 | Msa0690750 | 0.816244 | 6.110200e-52 | -8.615850e-47 |
| Msa0690750 | Msa1012320 | 0.801580 | 8.419426e-49 | -8.615850e-47 |
| Msa0690750 | Msa1375170 | 0.809784 | 1.594323e-50 | -8.615850e-47 |
| Msa0200260 | Msa0690750 | 0.804680 | 1.923304e-49 | -8.615850e-47 |
| Msa0439200 | Msa0690750 | 0.814882 | 1.228500e-51 | -8.615850e-47 |
| Msa0312650 | Msa0690750 | 0.813548 | 2.421285e-51 | -8.615850e-47 |
| Msa0523270 | Msa0690750 | 0.808870 | 2.504025e-50 | -8.615850e-47 |
| Msa0580260 | Msa0690750 | 0.893876 | 4.178399e-75 | -8.615850e-47 |
| Msa0599520 | Msa0690750 | 0.804375 | 2.226888e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690750 | MtrunA17_Chr4g0039571 | 94.161 | 274 | 13 | 2 | 1 | 274 | 1 | 271 | 0.0 | 510 |
| Msa0690750 | MtrunA17_Chr5g0440441 | 78.571 | 70 | 14 | 1 | 1 | 70 | 1 | 69 | 2.40e-29 | 106 |
| Msa0690750 | MtrunA17_Chr3g0082041 | 78.571 | 70 | 14 | 1 | 1 | 70 | 105 | 173 | 1.12e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690750 | AT5G17070.2 | 53.093 | 194 | 73 | 4 | 49 | 236 | 20 | 201 | 2.01e-58 | 187 |
| Msa0690750 | AT5G17070.1 | 53.093 | 194 | 73 | 4 | 49 | 236 | 55 | 236 | 6.49e-58 | 186 |
Find 74 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTATGCTCATCGGTTTA+TGG | 0.222050 | 4_4:-58631686 | None:intergenic |
| CTTGCCTTCTCTTGGTCATC+TGG | 0.238861 | 4_4:-58631376 | None:intergenic |
| CTCTGATCTGGTCAACAAAT+TGG | 0.259921 | 4_4:+58629953 | Msa0690750:CDS |
| TTGCATCCACCGGGAGGTTT+TGG | 0.268634 | 4_4:+58628251 | Msa0690750:CDS |
| TCGGTTTATGGATTTAAATA+TGG | 0.278522 | 4_4:-58631674 | None:intergenic |
| CAAACCCTTTGCAATGTAAA+TGG | 0.297645 | 4_4:-58630939 | None:intergenic |
| AACACTTTGTTCTCAGCATT+TGG | 0.297719 | 4_4:-58631732 | None:intergenic |
| CAATCTGATGGTGCACAAAA+TGG | 0.303713 | 4_4:+58631421 | Msa0690750:CDS |
| AAAGCAAGCTTGGAAAGATT+TGG | 0.328975 | 4_4:-58631103 | None:intergenic |
| CGCATCGATTTGTAGATTAT+CGG | 0.331540 | 4_4:-58628045 | None:intergenic |
| TGGTCATCTGGTTCTTGTAC+TGG | 0.331830 | 4_4:-58631364 | None:intergenic |
| GCATTTCACTTGCCTTCTCT+TGG | 0.337392 | 4_4:-58631384 | None:intergenic |
| TATGTTAGTTGCTACTATAT+TGG | 0.341025 | 4_4:+58632024 | Msa0690750:three_prime_UTR |
| TTTCATAGTGTTTAATGCTC+TGG | 0.379171 | 4_4:+58631764 | Msa0690750:three_prime_UTR |
| TGTACTGGATCTTGTGGATA+AGG | 0.381384 | 4_4:-58631349 | None:intergenic |
| TGCTGAGAACAAAGTGTTAT+GGG | 0.383768 | 4_4:+58631737 | Msa0690750:three_prime_UTR |
| GCTTGTGCATTATTAGCATT+TGG | 0.389227 | 4_4:-58631634 | None:intergenic |
| ATGCTGAGAACAAAGTGTTA+TGG | 0.389497 | 4_4:+58631736 | Msa0690750:three_prime_UTR |
| TAGATTATCGGCGCCGTCGC+TGG | 0.407886 | 4_4:-58628033 | None:intergenic |
| TTCAAGAGCTAAAGCAAGCT+TGG | 0.417322 | 4_4:-58631113 | None:intergenic |
| GAGCAGCAATGTGCTTCATT+AGG | 0.432277 | 4_4:+58629921 | Msa0690750:CDS |
| TTGTATGGCACAGATTCTAT+TGG | 0.438233 | 4_4:+58631063 | Msa0690750:intron |
| TGATGATGTGGCCGTTGAAA+TGG | 0.439402 | 4_4:+58631510 | Msa0690750:CDS |
| TTAGTTGCTACTATATTGGT+TGG | 0.446831 | 4_4:+58632028 | Msa0690750:three_prime_UTR |
| CAGCAAGAGCAGCAATCTGA+TGG | 0.453930 | 4_4:+58631409 | Msa0690750:CDS |
| TAGTGTTTAATGCTCTGGTC+TGG | 0.470062 | 4_4:+58631769 | Msa0690750:three_prime_UTR |
| AGGAGAGTCCTACTCTGATC+TGG | 0.492552 | 4_4:+58629941 | Msa0690750:CDS |
| CCCACCATTTACATTGCAAA+GGG | 0.494748 | 4_4:+58630935 | Msa0690750:CDS |
| TTCAAAAGTTTCCATTTCAA+CGG | 0.494977 | 4_4:-58631521 | None:intergenic |
| ACATCCAATAGATACAAAAC+AGG | 0.502462 | 4_4:-58631841 | None:intergenic |
| TATGGCACAGATTCTATTGG+AGG | 0.505511 | 4_4:+58631066 | Msa0690750:intron |
| TACAAGATGTTACAAGTTGA+CGG | 0.507974 | 4_4:-58632074 | None:intergenic |
| GCTTGCTTTAGCTCTTGAAA+AGG | 0.517580 | 4_4:+58631117 | Msa0690750:CDS |
| CATAGTTGCTGCAGAGGGCA+TGG | 0.520683 | 4_4:-58632005 | None:intergenic |
| GCCCACCATTTACATTGCAA+AGG | 0.522566 | 4_4:+58630934 | Msa0690750:CDS |
| GGTTCTTGTACTGGATCTTG+TGG | 0.524897 | 4_4:-58631355 | None:intergenic |
| AAGCGCATCAAAATTTAAGA+AGG | 0.528032 | 4_4:-58627947 | None:intergenic |
| CTACAAGCTATTGCATCCAC+CGG | 0.529703 | 4_4:+58628241 | Msa0690750:CDS |
| ACAAGATGTTACAAGTTGAC+GGG | 0.529835 | 4_4:-58632073 | None:intergenic |
| CCCTTTGCAATGTAAATGGT+GGG | 0.531120 | 4_4:-58630935 | None:intergenic |
| GCTGTCATTTCAGCTGAAGC+AGG | 0.540223 | 4_4:+58629682 | Msa0690750:CDS |
| CTGCAGAGGGCATGGCGACA+AGG | 0.545643 | 4_4:-58631997 | None:intergenic |
| CTGGTCAACAAATTGGATGA+AGG | 0.546897 | 4_4:+58629960 | Msa0690750:CDS |
| TGCATTATTAGCATTTGGCT+CGG | 0.547032 | 4_4:-58631629 | None:intergenic |
| TACATTGCAAAGGGTTTGTG+AGG | 0.548155 | 4_4:+58630944 | Msa0690750:CDS |
| TTTGTATAACAGGCATGACT+GGG | 0.559350 | 4_4:+58629643 | Msa0690750:intron |
| ACCCTTTGCAATGTAAATGG+TGG | 0.560756 | 4_4:-58630936 | None:intergenic |
| CACCGATGAAGTAATGGTTG+AGG | 0.562727 | 4_4:+58631477 | Msa0690750:CDS |
| AGCCTCAACCATTACTTCAT+CGG | 0.572202 | 4_4:-58631479 | None:intergenic |
| AAAATTTAAGAAGGATGAGT+CGG | 0.572947 | 4_4:-58627938 | None:intergenic |
| GGAAAATATGCAGCAACCAC+CGG | 0.576178 | 4_4:+58628001 | Msa0690750:CDS |
| CGCTTGTAGAGGGATTATGA+TGG | 0.577496 | 4_4:+58627965 | Msa0690750:exon |
| TTTGTTGACCAGATCAGAGT+AGG | 0.579578 | 4_4:-58629949 | None:intergenic |
| ATCAGACACCGATGAAGTAA+TGG | 0.582608 | 4_4:+58631471 | Msa0690750:CDS |
| AACTAACATAGTTGCTGCAG+AGG | 0.590396 | 4_4:-58632011 | None:intergenic |
| ACATCTGAGTCTATGCTCAT+CGG | 0.599091 | 4_4:-58631693 | None:intergenic |
| GTGTCTGATACAAGAGACTC+AGG | 0.608243 | 4_4:-58631457 | None:intergenic |
| CCGTCGCTGGAAGAAACCAC+CGG | 0.610474 | 4_4:-58628020 | None:intergenic |
| CCGGTGGTTTCTTCCAGCGA+CGG | 0.612601 | 4_4:+58628020 | Msa0690750:CDS |
| TACAAGCTATTGCATCCACC+GGG | 0.620311 | 4_4:+58628242 | Msa0690750:CDS |
| TATGATGGAGACGCAACCAC+AGG | 0.621867 | 4_4:+58627980 | Msa0690750:exon |
| TAACACTTACCAAAACCTCC+CGG | 0.628465 | 4_4:-58628260 | None:intergenic |
| ATTTAAGAAGGATGAGTCGG+AGG | 0.636623 | 4_4:-58627935 | None:intergenic |
| TGACATGAGCTTGTATAACT+CGG | 0.639653 | 4_4:+58631878 | Msa0690750:three_prime_UTR |
| ACTAACATAGTTGCTGCAGA+GGG | 0.642791 | 4_4:-58632010 | None:intergenic |
| AGAACCAGATGACCAAGAGA+AGG | 0.653708 | 4_4:+58631372 | Msa0690750:CDS |
| GGCTGATACGAGTGATGATG+TGG | 0.661091 | 4_4:+58631498 | Msa0690750:CDS |
| CACTTACCAAAACCTCCCGG+TGG | 0.684177 | 4_4:-58628257 | None:intergenic |
| TAATCTACAAATCGATGCGG+CGG | 0.688531 | 4_4:+58628049 | Msa0690750:CDS |
| AAATATGCAGCAACCACCGG+TGG | 0.691810 | 4_4:+58628004 | Msa0690750:CDS |
| AAGCTATTGCATCCACCGGG+AGG | 0.696099 | 4_4:+58628245 | Msa0690750:CDS |
| CGATAATCTACAAATCGATG+CGG | 0.713121 | 4_4:+58628046 | Msa0690750:CDS |
| GGTATTGTCCGAGTACCCTG+AGG | 0.745796 | 4_4:+58629884 | Msa0690750:intron |
| TCGCTGGAAGAAACCACCGG+TGG | 0.754673 | 4_4:-58628017 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACTCATAATTATGATA+AGG | + | chr4_4:58628505-58628524 | Msa0690750:intron | 15.0% |
| !!! | ATTTTGATTTTTGACATTAA+AGG | - | chr4_4:58628659-58628678 | None:intergenic | 15.0% |
| !! | AGAAAGATTAAAGAATAAAT+CGG | + | chr4_4:58629004-58629023 | Msa0690750:intron | 15.0% |
| !! | GTAAAATATTTAATTACTCT+TGG | + | chr4_4:58630120-58630139 | Msa0690750:intron | 15.0% |
| !!! | AAGAGCTAATAAAATTATTT+TGG | + | chr4_4:58630144-58630163 | Msa0690750:intron | 15.0% |
| !!! | AGAGCTAATAAAATTATTTT+GGG | + | chr4_4:58630145-58630164 | Msa0690750:intron | 15.0% |
| !!! | AAAATAGTTTATTTTTGTGT+TGG | + | chr4_4:58630517-58630536 | Msa0690750:intron | 15.0% |
| !!! | TCAATTTTTTGATCAATATT+TGG | - | chr4_4:58631607-58631626 | None:intergenic | 15.0% |
| !!! | ATTAGTTTTATTTTGTGTGT+TGG | + | chr4_4:58628340-58628359 | Msa0690750:intron | 20.0% |
| !! | ACATAATTTAGTGTATTGAA+GGG | - | chr4_4:58628573-58628592 | None:intergenic | 20.0% |
| !! | AACATAATTTAGTGTATTGA+AGG | - | chr4_4:58628574-58628593 | None:intergenic | 20.0% |
| !!! | AGTTATAAACGTTTTATCTT+TGG | + | chr4_4:58629201-58629220 | Msa0690750:intron | 20.0% |
| !!! | TATATTATGTTAGTTCTTAG+AGG | + | chr4_4:58629737-58629756 | Msa0690750:intron | 20.0% |
| !!! | TTGTTCACATATTAGTTTAT+TGG | + | chr4_4:58629791-58629810 | Msa0690750:intron | 20.0% |
| !! | TTGATGTCTATGAAATTTAA+TGG | - | chr4_4:58630021-58630040 | None:intergenic | 20.0% |
| !!! | AAAAGCATTTCAAAGTTAAT+TGG | - | chr4_4:58630882-58630901 | None:intergenic | 20.0% |
| !!! | ATGTTATCTGATATTTTGTA+TGG | + | chr4_4:58631048-58631067 | Msa0690750:intron | 20.0% |
| !!! | TCTATTTTTTGATCAAGATT+TGG | - | chr4_4:58631577-58631596 | None:intergenic | 20.0% |
| ! | AAAATTTAAGAAGGATGAGT+CGG | - | chr4_4:58627941-58627960 | None:intergenic | 25.0% |
| ! | CATAATTTAGTGTATTGAAG+GGG | - | chr4_4:58628572-58628591 | None:intergenic | 25.0% |
| ! | CATAAAATAACTCATTCTCA+TGG | - | chr4_4:58628625-58628644 | None:intergenic | 25.0% |
| !!! | CATGAGAATGAGTTATTTTA+TGG | + | chr4_4:58628623-58628642 | Msa0690750:intron | 25.0% |
| !!! | CAACATTTTAGAATTGCTTA+AGG | + | chr4_4:58628725-58628744 | Msa0690750:intron | 25.0% |
| !! | TATCTTTGGTTTAATACATG+AGG | + | chr4_4:58629215-58629234 | Msa0690750:intron | 25.0% |
| ! | GAATTACAAAAACAAGCATT+AGG | - | chr4_4:58629504-58629523 | None:intergenic | 25.0% |
| ! | ATGCACTTTAAACAATAATG+TGG | + | chr4_4:58629614-58629633 | Msa0690750:intron | 25.0% |
| ! | CAATACCTGTACAAAAATTA+TGG | - | chr4_4:58629871-58629890 | None:intergenic | 25.0% |
| ! | AATGGTACTCATAAAAAACA+GGG | - | chr4_4:58630003-58630022 | None:intergenic | 25.0% |
| ! | TAATGGTACTCATAAAAAAC+AGG | - | chr4_4:58630004-58630023 | None:intergenic | 25.0% |
| ! | CTCATTTAACTGATAAACAA+TGG | + | chr4_4:58630721-58630740 | Msa0690750:intron | 25.0% |
| ! | TTGAATAATGATCTCCTTTA+AGG | + | chr4_4:58630816-58630835 | Msa0690750:intron | 25.0% |
| ! | TGAATAATGATCTCCTTTAA+GGG | + | chr4_4:58630817-58630836 | Msa0690750:intron | 25.0% |
| ! | TAGTTCAGCAATAAATAACA+TGG | - | chr4_4:58630851-58630870 | None:intergenic | 25.0% |
| !!! | TTAACTTTGAAATGCTTTTC+TGG | + | chr4_4:58630883-58630902 | Msa0690750:intron | 25.0% |
| ! | TGTTGTGCATTATTATATTC+TGG | + | chr4_4:58630986-58631005 | Msa0690750:intron | 25.0% |
| ! | GTTGTGCATTATTATATTCT+GGG | + | chr4_4:58630987-58631006 | Msa0690750:intron | 25.0% |
| ! | GATTAACCAATTACAAATAC+AGG | - | chr4_4:58631206-58631225 | None:intergenic | 25.0% |
| !! | TGGTTAATCATGCATTTTTA+TGG | + | chr4_4:58631217-58631236 | Msa0690750:intron | 25.0% |
| ! | CACATGAATTATAGATAACT+TGG | + | chr4_4:58631244-58631263 | Msa0690750:intron | 25.0% |
| ! | TTCAAAAGTTTCCATTTCAA+CGG | - | chr4_4:58631524-58631543 | None:intergenic | 25.0% |
| !! | TTTTTGATCAATATTTGGCT+CGG | - | chr4_4:58631602-58631621 | None:intergenic | 25.0% |
| ! | TCGGTTTATGGATTTAAATA+TGG | - | chr4_4:58631677-58631696 | None:intergenic | 25.0% |
| ! | TATGTTAGTTGCTACTATAT+TGG | + | chr4_4:58632024-58632043 | Msa0690750:three_prime_UTR | 25.0% |
| AAGCGCATCAAAATTTAAGA+AGG | - | chr4_4:58627950-58627969 | None:intergenic | 30.0% | |
| TAGAAAAAAGCGATGTTTCA+AGG | + | chr4_4:58628200-58628219 | Msa0690750:CDS | 30.0% | |
| AGAAAAAAGCGATGTTTCAA+GGG | + | chr4_4:58628201-58628220 | Msa0690750:CDS | 30.0% | |
| ! | TTAAGAGATTTTGTGTGTGT+TGG | + | chr4_4:58628302-58628321 | Msa0690750:intron | 30.0% |
| !! | ACAAATCGTTAATTTGCCAT+TGG | - | chr4_4:58628755-58628774 | None:intergenic | 30.0% |
| TGTTCAGTTACTTACTTGTT+AGG | + | chr4_4:58628799-58628818 | Msa0690750:intron | 30.0% | |
| !! | TCTAGTTCTAGGTATAGTTT+AGG | - | chr4_4:58628838-58628857 | None:intergenic | 30.0% |
| ! | AGTTCAATTGTTAGAGGTAT+AGG | + | chr4_4:58628974-58628993 | Msa0690750:intron | 30.0% |
| ! | GTTCAATTGTTAGAGGTATA+GGG | + | chr4_4:58628975-58628994 | Msa0690750:intron | 30.0% |
| TATTGAATAGCTGATGTTTC+TGG | + | chr4_4:58629091-58629110 | Msa0690750:intron | 30.0% | |
| TATTTGCTTATGTATGAGAC+CGG | + | chr4_4:58629167-58629186 | Msa0690750:intron | 30.0% | |
| TTATAACTAAATACTCCCTC+CGG | - | chr4_4:58629189-58629208 | None:intergenic | 30.0% | |
| ACAATTAAACCAAAACCTCA+AGG | - | chr4_4:58629322-58629341 | None:intergenic | 30.0% | |
| CGATGATAACACAAAATGAT+TGG | - | chr4_4:58629345-58629364 | None:intergenic | 30.0% | |
| TGTAGTGAATACAATGATAG+AGG | - | chr4_4:58629557-58629576 | None:intergenic | 30.0% | |
| TATCATTGTATTCACTACAG+TGG | + | chr4_4:58629558-58629577 | Msa0690750:intron | 30.0% | |
| !!! | GTGGTCATTTTTTGTATAAC+AGG | + | chr4_4:58629633-58629652 | Msa0690750:intron | 30.0% |
| ! | TCTCTCCATAATTTTTGTAC+AGG | + | chr4_4:58629863-58629882 | Msa0690750:intron | 30.0% |
| ATAAAAAACAGGGGAACTAA+AGG | - | chr4_4:58629993-58630012 | None:intergenic | 30.0% | |
| ATGGTACTCATAAAAAACAG+GGG | - | chr4_4:58630002-58630021 | None:intergenic | 30.0% | |
| GAATATCAATCTTAGAGATG+TGG | + | chr4_4:58630167-58630186 | Msa0690750:intron | 30.0% | |
| TGGTACACTTATCTAAACAT+TGG | + | chr4_4:58630340-58630359 | Msa0690750:intron | 30.0% | |
| AATTTCGAAACTAGAATGGA+TGG | - | chr4_4:58630663-58630682 | None:intergenic | 30.0% | |
| CTCTGTTCTTTCTTAATCAT+TGG | + | chr4_4:58630778-58630797 | Msa0690750:intron | 30.0% | |
| !! | TTATTCAAGAGATTTGTTGC+AGG | - | chr4_4:58630804-58630823 | None:intergenic | 30.0% |
| TCAATAAAACATGTAAGTGC+TGG | - | chr4_4:58630912-58630931 | None:intergenic | 30.0% | |
| !! | GCACTTACATGTTTTATTGA+TGG | + | chr4_4:58630912-58630931 | Msa0690750:intron | 30.0% |
| ! | ATGTTAACCTTGATGGATAT+TGG | - | chr4_4:58631014-58631033 | None:intergenic | 30.0% |
| TACTATCATGTTAACCTTGA+TGG | - | chr4_4:58631021-58631040 | None:intergenic | 30.0% | |
| GAAGATCCTGTATTTGTAAT+TGG | + | chr4_4:58631197-58631216 | Msa0690750:intron | 30.0% | |
| AAAAACACCATATAGAAGTC+AGG | - | chr4_4:58631282-58631301 | None:intergenic | 30.0% | |
| TTTCATAGTGTTTAATGCTC+TGG | + | chr4_4:58631764-58631783 | Msa0690750:three_prime_UTR | 30.0% | |
| ! | CTTTCCTGTTTTGTATCTAT+TGG | + | chr4_4:58631837-58631856 | Msa0690750:three_prime_UTR | 30.0% |
| ACATCCAATAGATACAAAAC+AGG | - | chr4_4:58631844-58631863 | None:intergenic | 30.0% | |
| TTAGTTGCTACTATATTGGT+TGG | + | chr4_4:58632028-58632047 | Msa0690750:three_prime_UTR | 30.0% | |
| ! | TACAAGATGTTACAAGTTGA+CGG | - | chr4_4:58632077-58632096 | None:intergenic | 30.0% |
| !! | AAATTTTGATGCGCTTGTAG+AGG | + | chr4_4:58627954-58627973 | Msa0690750:five_prime_UTR | 35.0% |
| !! | AATTTTGATGCGCTTGTAGA+GGG | + | chr4_4:58627955-58627974 | Msa0690750:five_prime_UTR | 35.0% |
| !! | CGCATCGATTTGTAGATTAT+CGG | - | chr4_4:58628048-58628067 | None:intergenic | 35.0% |
| CGATAATCTACAAATCGATG+CGG | + | chr4_4:58628046-58628065 | Msa0690750:CDS | 35.0% | |
| AAATGTTGTATTGCTGCAAC+TGG | - | chr4_4:58628713-58628732 | None:intergenic | 35.0% | |
| CTATACCTAGAACTAGAAAG+TGG | + | chr4_4:58628841-58628860 | Msa0690750:intron | 35.0% | |
| !! | ACTTTCCACTTTCTAGTTCT+AGG | - | chr4_4:58628849-58628868 | None:intergenic | 35.0% |
| ! | TTTTATTGCTAGCAGATGTC+TGG | + | chr4_4:58628920-58628939 | Msa0690750:intron | 35.0% |
| GAGAACAGTTCAATTGTTAG+AGG | + | chr4_4:58628968-58628987 | Msa0690750:intron | 35.0% | |
| TGTCGATATATGAGACAGAA+GGG | - | chr4_4:58629045-58629064 | None:intergenic | 35.0% | |
| TTGTCGATATATGAGACAGA+AGG | - | chr4_4:58629046-58629065 | None:intergenic | 35.0% | |
| !!! | AGTTGTTTTTCTTTCCTTCC+AGG | + | chr4_4:58629066-58629085 | Msa0690750:intron | 35.0% |
| AGCTATTCAATAAACCTGGA+AGG | - | chr4_4:58629083-58629102 | None:intergenic | 35.0% | |
| CATCAGCTATTCAATAAACC+TGG | - | chr4_4:58629087-58629106 | None:intergenic | 35.0% | |
| AACACAACAACAACAACAAC+CGG | - | chr4_4:58629277-58629296 | None:intergenic | 35.0% | |
| TTAAACCAAAACCTCAAGGA+AGG | - | chr4_4:58629318-58629337 | None:intergenic | 35.0% | |
| TGACAATCAACATCAGTCTA+AGG | - | chr4_4:58629412-58629431 | None:intergenic | 35.0% | |
| ATTGTCACTGTTAGCTATGA+TGG | + | chr4_4:58629425-58629444 | Msa0690750:intron | 35.0% | |
| ! | TTTTGTATAACAGGCATGAC+TGG | + | chr4_4:58629642-58629661 | Msa0690750:intron | 35.0% |
| TTTGTATAACAGGCATGACT+GGG | + | chr4_4:58629643-58629662 | Msa0690750:intron | 35.0% | |
| !! | TTTTCCCTTGGTGCATTTAA+TGG | + | chr4_4:58630210-58630229 | Msa0690750:intron | 35.0% |
| ACAACCATTAAATGCACCAA+GGG | - | chr4_4:58630217-58630236 | None:intergenic | 35.0% | |
| TACAACCATTAAATGCACCA+AGG | - | chr4_4:58630218-58630237 | None:intergenic | 35.0% | |
| !!! | ACTTGTTTTAGAGTCTTGAC+TGG | + | chr4_4:58630286-58630305 | Msa0690750:intron | 35.0% |
| TCCATGAGAGATAAACTTCT+TGG | + | chr4_4:58630604-58630623 | Msa0690750:intron | 35.0% | |
| AGCGAATTTCGAAACTAGAA+TGG | - | chr4_4:58630667-58630686 | None:intergenic | 35.0% | |
| ! | TGAGTGTCACTACTTCATTA+TGG | - | chr4_4:58630705-58630724 | None:intergenic | 35.0% |
| CAAACCCTTTGCAATGTAAA+TGG | - | chr4_4:58630942-58630961 | None:intergenic | 35.0% | |
| TTGTATGGCACAGATTCTAT+TGG | + | chr4_4:58631063-58631082 | Msa0690750:intron | 35.0% | |
| AAAGCAAGCTTGGAAAGATT+TGG | - | chr4_4:58631106-58631125 | None:intergenic | 35.0% | |
| ! | CATTTTGCCTGACTTCTATA+TGG | + | chr4_4:58631272-58631291 | Msa0690750:intron | 35.0% |
| TGCATTATTAGCATTTGGCT+CGG | - | chr4_4:58631632-58631651 | None:intergenic | 35.0% | |
| GCTTGTGCATTATTAGCATT+TGG | - | chr4_4:58631637-58631656 | None:intergenic | 35.0% | |
| AACACTTTGTTCTCAGCATT+TGG | - | chr4_4:58631735-58631754 | None:intergenic | 35.0% | |
| ! | ATGCTGAGAACAAAGTGTTA+TGG | + | chr4_4:58631736-58631755 | Msa0690750:three_prime_UTR | 35.0% |
| ! | TGCTGAGAACAAAGTGTTAT+GGG | + | chr4_4:58631737-58631756 | Msa0690750:three_prime_UTR | 35.0% |
| TGACATGAGCTTGTATAACT+CGG | + | chr4_4:58631878-58631897 | Msa0690750:three_prime_UTR | 35.0% | |
| !!! | GTTGGTTTTTGCGATTATTG+AGG | + | chr4_4:58632046-58632065 | Msa0690750:three_prime_UTR | 35.0% |
| ! | ACAAGATGTTACAAGTTGAC+GGG | - | chr4_4:58632076-58632095 | None:intergenic | 35.0% |
| ATTTAAGAAGGATGAGTCGG+AGG | - | chr4_4:58627938-58627957 | None:intergenic | 40.0% | |
| TAATCTACAAATCGATGCGG+CGG | + | chr4_4:58628049-58628068 | Msa0690750:CDS | 40.0% | |
| TAACACTTACCAAAACCTCC+CGG | - | chr4_4:58628263-58628282 | None:intergenic | 40.0% | |
| CTTGAGCTATTTGACACATG+TGG | - | chr4_4:58628466-58628485 | None:intergenic | 40.0% | |
| CTTTCAATTCATGCAAGGCA+CGG | - | chr4_4:58628539-58628558 | None:intergenic | 40.0% | |
| AGACGCTTTCAATTCATGCA+AGG | - | chr4_4:58628544-58628563 | None:intergenic | 40.0% | |
| TTGCTGCAACTGGAACTAAA+AGG | - | chr4_4:58628703-58628722 | None:intergenic | 40.0% | |
| AATTGCTTAAGGACTGCCAA+TGG | + | chr4_4:58628736-58628755 | Msa0690750:intron | 40.0% | |
| GCTAGCAATAAAAATCAGCG+AGG | - | chr4_4:58628913-58628932 | None:intergenic | 40.0% | |
| ! | CGGTGAGACTTTTCTCATTA+GGG | - | chr4_4:58629257-58629276 | None:intergenic | 40.0% |
| CCTAATGAGAAAAGTCTCAC+CGG | + | chr4_4:58629255-58629274 | Msa0690750:intron | 40.0% | |
| CATCAGTCTAAGGAAGATAG+CGG | - | chr4_4:58629402-58629421 | None:intergenic | 40.0% | |
| CACTGTTAGCTATGATGGTT+AGG | + | chr4_4:58629430-58629449 | Msa0690750:intron | 40.0% | |
| ATTTCAGCTGAAGCAGGTAT+GGG | + | chr4_4:58629688-58629707 | Msa0690750:intron | 40.0% | |
| ! | CACTTGTCAATTTTGCCTCA+GGG | - | chr4_4:58629902-58629921 | None:intergenic | 40.0% |
| ! | TCACTTGTCAATTTTGCCTC+AGG | - | chr4_4:58629903-58629922 | None:intergenic | 40.0% |
| TTTGTTGACCAGATCAGAGT+AGG | - | chr4_4:58629952-58629971 | None:intergenic | 40.0% | |
| CTCTGATCTGGTCAACAAAT+TGG | + | chr4_4:58629953-58629972 | Msa0690750:CDS | 40.0% | |
| CTGGTCAACAAATTGGATGA+AGG | + | chr4_4:58629960-58629979 | Msa0690750:CDS | 40.0% | |
| AAAACAGGGGAACTAAAGGT+GGG | - | chr4_4:58629989-58630008 | None:intergenic | 40.0% | |
| AAAAACAGGGGAACTAAAGG+TGG | - | chr4_4:58629990-58630009 | None:intergenic | 40.0% | |
| GGAAAAGTGAGTACCAAACA+CGG | - | chr4_4:58630196-58630215 | None:intergenic | 40.0% | |
| !! | TTTGGTACTCACTTTTCCCT+TGG | + | chr4_4:58630198-58630217 | Msa0690750:intron | 40.0% |
| GTTTAGATAAGTGTACCAGC+AGG | - | chr4_4:58630338-58630357 | None:intergenic | 40.0% | |
| AACATTGGCCATATAGCTAC+TGG | + | chr4_4:58630355-58630374 | Msa0690750:intron | 40.0% | |
| TCCAGTCTTGACATACATGT+TGG | - | chr4_4:58630543-58630562 | None:intergenic | 40.0% | |
| GGATACTCTTCTACAAGCTT+TGG | - | chr4_4:58630587-58630606 | None:intergenic | 40.0% | |
| GCCAAGAAGTTTATCTCTCA+TGG | - | chr4_4:58630608-58630627 | None:intergenic | 40.0% | |
| GAAAGAACAGAGTCTGAGTT+GGG | - | chr4_4:58630770-58630789 | None:intergenic | 40.0% | |
| AGAAAGAACAGAGTCTGAGT+TGG | - | chr4_4:58630771-58630790 | None:intergenic | 40.0% | |
| CCCTTTGCAATGTAAATGGT+GGG | - | chr4_4:58630938-58630957 | None:intergenic | 40.0% | |
| CCCACCATTTACATTGCAAA+GGG | + | chr4_4:58630935-58630954 | Msa0690750:CDS | 40.0% | |
| ACCCTTTGCAATGTAAATGG+TGG | - | chr4_4:58630939-58630958 | None:intergenic | 40.0% | |
| TACATTGCAAAGGGTTTGTG+AGG | + | chr4_4:58630944-58630963 | Msa0690750:CDS | 40.0% | |
| TATGGCACAGATTCTATTGG+AGG | + | chr4_4:58631066-58631085 | Msa0690750:intron | 40.0% | |
| TTCAAGAGCTAAAGCAAGCT+TGG | - | chr4_4:58631116-58631135 | None:intergenic | 40.0% | |
| !! | GCTTGCTTTAGCTCTTGAAA+AGG | + | chr4_4:58631117-58631136 | Msa0690750:CDS | 40.0% |
| TGTACTGGATCTTGTGGATA+AGG | - | chr4_4:58631352-58631371 | None:intergenic | 40.0% | |
| ! | CAATCTGATGGTGCACAAAA+TGG | + | chr4_4:58631421-58631440 | Msa0690750:CDS | 40.0% |
| ATCAGACACCGATGAAGTAA+TGG | + | chr4_4:58631471-58631490 | Msa0690750:CDS | 40.0% | |
| AGCCTCAACCATTACTTCAT+CGG | - | chr4_4:58631482-58631501 | None:intergenic | 40.0% | |
| !! | AGTCTATGCTCATCGGTTTA+TGG | - | chr4_4:58631689-58631708 | None:intergenic | 40.0% |
| ACATCTGAGTCTATGCTCAT+CGG | - | chr4_4:58631696-58631715 | None:intergenic | 40.0% | |
| TAGTGTTTAATGCTCTGGTC+TGG | + | chr4_4:58631769-58631788 | Msa0690750:three_prime_UTR | 40.0% | |
| ACTAACATAGTTGCTGCAGA+GGG | - | chr4_4:58632013-58632032 | None:intergenic | 40.0% | |
| AACTAACATAGTTGCTGCAG+AGG | - | chr4_4:58632014-58632033 | None:intergenic | 40.0% | |
| CGCTTGTAGAGGGATTATGA+TGG | + | chr4_4:58627965-58627984 | Msa0690750:exon | 45.0% | |
| ! | GGTTGCTGCATATTTTCCTG+TGG | - | chr4_4:58627999-58628018 | None:intergenic | 45.0% |
| GGAAAATATGCAGCAACCAC+CGG | + | chr4_4:58628001-58628020 | Msa0690750:CDS | 45.0% | |
| CTACAAGCTATTGCATCCAC+CGG | + | chr4_4:58628241-58628260 | Msa0690750:CDS | 45.0% | |
| TACAAGCTATTGCATCCACC+GGG | + | chr4_4:58628242-58628261 | Msa0690750:CDS | 45.0% | |
| AAAAATCAGCGAGGCTGCAT+CGG | - | chr4_4:58628904-58628923 | None:intergenic | 45.0% | |
| TTGCTAGCAGATGTCTGGTT+TGG | + | chr4_4:58628925-58628944 | Msa0690750:intron | 45.0% | |
| !! | AGCAGATGTCTGGTTTGGTA+AGG | + | chr4_4:58628930-58628949 | Msa0690750:intron | 45.0% |
| !! | AGATGTCTGGTTTGGTAAGG+AGG | + | chr4_4:58628933-58628952 | Msa0690750:intron | 45.0% |
| !! | GATGTCTGGTTTGGTAAGGA+GGG | + | chr4_4:58628934-58628953 | Msa0690750:intron | 45.0% |
| TTGCTTATGTATGAGACCGG+AGG | + | chr4_4:58629170-58629189 | Msa0690750:intron | 45.0% | |
| TGCTTATGTATGAGACCGGA+GGG | + | chr4_4:58629171-58629190 | Msa0690750:intron | 45.0% | |
| ! | CCGGTGAGACTTTTCTCATT+AGG | - | chr4_4:58629258-58629277 | None:intergenic | 45.0% |
| CTCAAGGAAGGAACAGTGAA+GGG | - | chr4_4:58629306-58629325 | None:intergenic | 45.0% | |
| ! | CTGTTCCTTCCTTGAGGTTT+TGG | + | chr4_4:58629310-58629329 | Msa0690750:intron | 45.0% |
| ! | TCTAAGGAAGATAGCGGCTA+AGG | - | chr4_4:58629396-58629415 | None:intergenic | 45.0% |
| CATTTCAGCTGAAGCAGGTA+TGG | + | chr4_4:58629687-58629706 | Msa0690750:intron | 45.0% | |
| TTTCAGCTGAAGCAGGTATG+GGG | + | chr4_4:58629689-58629708 | Msa0690750:intron | 45.0% | |
| ! | AGAGGTATGCTAGCATGTAG+CGG | + | chr4_4:58629755-58629774 | Msa0690750:intron | 45.0% |
| !! | CAATTTTGCCTCAGGGTACT+CGG | - | chr4_4:58629895-58629914 | None:intergenic | 45.0% |
| GAGCAGCAATGTGCTTCATT+AGG | + | chr4_4:58629921-58629940 | Msa0690750:CDS | 45.0% | |
| AGAGATGTGGAATCCGTGTT+TGG | + | chr4_4:58630180-58630199 | Msa0690750:intron | 45.0% | |
| GCTACACACCAGTAGCTATA+TGG | - | chr4_4:58630366-58630385 | None:intergenic | 45.0% | |
| GCCAACATGTATGTCAAGAC+TGG | + | chr4_4:58630539-58630558 | Msa0690750:intron | 45.0% | |
| CATGGCATATGCACCCTTAA+AGG | - | chr4_4:58630833-58630852 | None:intergenic | 45.0% | |
| GCCCACCATTTACATTGCAA+AGG | + | chr4_4:58630934-58630953 | Msa0690750:CDS | 45.0% | |
| TCTGGGTCCAATATCCATCA+AGG | + | chr4_4:58631004-58631023 | Msa0690750:intron | 45.0% | |
| GGTTCTTGTACTGGATCTTG+TGG | - | chr4_4:58631358-58631377 | None:intergenic | 45.0% | |
| !! | TGGTCATCTGGTTCTTGTAC+TGG | - | chr4_4:58631367-58631386 | None:intergenic | 45.0% |
| AGAACCAGATGACCAAGAGA+AGG | + | chr4_4:58631372-58631391 | Msa0690750:CDS | 45.0% | |
| GCATTTCACTTGCCTTCTCT+TGG | - | chr4_4:58631387-58631406 | None:intergenic | 45.0% | |
| GTGTCTGATACAAGAGACTC+AGG | - | chr4_4:58631460-58631479 | None:intergenic | 45.0% | |
| CACCGATGAAGTAATGGTTG+AGG | + | chr4_4:58631477-58631496 | Msa0690750:CDS | 45.0% | |
| ! | TGATGATGTGGCCGTTGAAA+TGG | + | chr4_4:58631510-58631529 | Msa0690750:CDS | 45.0% |
| !! | ATAATATTAATTGAAAAATA+TGG | + | chr4_4:58628424-58628443 | Msa0690750:intron | 5.0% |
| ! | TATGATGGAGACGCAACCAC+AGG | + | chr4_4:58627980-58627999 | Msa0690750:exon | 50.0% |
| AAATATGCAGCAACCACCGG+TGG | + | chr4_4:58628004-58628023 | Msa0690750:CDS | 50.0% | |
| CCTCAAGGAAGGAACAGTGA+AGG | - | chr4_4:58629307-58629326 | None:intergenic | 50.0% | |
| CCTTCACTGTTCCTTCCTTG+AGG | + | chr4_4:58629304-58629323 | Msa0690750:intron | 50.0% | |
| ! | GCTGTCATTTCAGCTGAAGC+AGG | + | chr4_4:58629682-58629701 | Msa0690750:CDS | 50.0% |
| AGGAGAGTCCTACTCTGATC+TGG | + | chr4_4:58629941-58629960 | Msa0690750:CDS | 50.0% | |
| GGAGCAGTTCACAGTTGAAC+TGG | + | chr4_4:58630307-58630326 | Msa0690750:intron | 50.0% | |
| CTTGCCTTCTCTTGGTCATC+TGG | - | chr4_4:58631379-58631398 | None:intergenic | 50.0% | |
| CAGCAAGAGCAGCAATCTGA+TGG | + | chr4_4:58631409-58631428 | Msa0690750:CDS | 50.0% | |
| ! | GGCTGATACGAGTGATGATG+TGG | + | chr4_4:58631498-58631517 | Msa0690750:CDS | 50.0% |
| AAGCTATTGCATCCACCGGG+AGG | + | chr4_4:58628245-58628264 | Msa0690750:CDS | 55.0% | |
| ! | TTGCATCCACCGGGAGGTTT+TGG | + | chr4_4:58628251-58628270 | Msa0690750:CDS | 55.0% |
| CACTTACCAAAACCTCCCGG+TGG | - | chr4_4:58628260-58628279 | None:intergenic | 55.0% | |
| GCACGCAGACACTGACATGT+AGG | + | chr4_4:58628396-58628415 | Msa0690750:intron | 55.0% | |
| !! | TCTGGTTTGGTAAGGAGGGC+TGG | + | chr4_4:58628938-58628957 | Msa0690750:intron | 55.0% |
| GGTATTGTCCGAGTACCCTG+AGG | + | chr4_4:58629884-58629903 | Msa0690750:intron | 55.0% | |
| GTTGAACTGGACTGACCTGC+TGG | + | chr4_4:58630320-58630339 | Msa0690750:intron | 55.0% | |
| CATAGTTGCTGCAGAGGGCA+TGG | - | chr4_4:58632008-58632027 | None:intergenic | 55.0% | |
| TCGCTGGAAGAAACCACCGG+TGG | - | chr4_4:58628020-58628039 | None:intergenic | 60.0% | |
| CCGTCGCTGGAAGAAACCAC+CGG | - | chr4_4:58628023-58628042 | None:intergenic | 60.0% | |
| CCGGTGGTTTCTTCCAGCGA+CGG | + | chr4_4:58628020-58628039 | Msa0690750:CDS | 60.0% | |
| TAGATTATCGGCGCCGTCGC+TGG | - | chr4_4:58628036-58628055 | None:intergenic | 60.0% | |
| CAGCTGAAGCAGGTATGGGG+AGG | + | chr4_4:58629692-58629711 | Msa0690750:intron | 60.0% | |
| ! | CTGCAGAGGGCATGGCGACA+AGG | - | chr4_4:58632000-58632019 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 58627902 | 58632115 | 58627902 | ID=Msa0690750;Name=Msa0690750 |
| chr4_4 | mRNA | 58627902 | 58632115 | 58627902 | ID=Msa0690750-mRNA-1;Parent=Msa0690750;Name=Msa0690750-mRNA-1;_AED=0.22;_eAED=0.22;_QI=79|1|1|1|1|1|7|452|274 |
| chr4_4 | exon | 58627902 | 58628093 | 58627902 | ID=Msa0690750-mRNA-1:exon:15776;Parent=Msa0690750-mRNA-1 |
| chr4_4 | exon | 58628177 | 58628272 | 58628177 | ID=Msa0690750-mRNA-1:exon:15777;Parent=Msa0690750-mRNA-1 |
| chr4_4 | exon | 58629655 | 58629703 | 58629655 | ID=Msa0690750-mRNA-1:exon:15778;Parent=Msa0690750-mRNA-1 |
| chr4_4 | exon | 58629885 | 58629981 | 58629885 | ID=Msa0690750-mRNA-1:exon:15779;Parent=Msa0690750-mRNA-1 |
| chr4_4 | exon | 58630913 | 58630965 | 58630913 | ID=Msa0690750-mRNA-1:exon:15780;Parent=Msa0690750-mRNA-1 |
| chr4_4 | exon | 58631076 | 58631138 | 58631076 | ID=Msa0690750-mRNA-1:exon:15781;Parent=Msa0690750-mRNA-1 |
| chr4_4 | exon | 58631310 | 58632115 | 58631310 | ID=Msa0690750-mRNA-1:exon:15782;Parent=Msa0690750-mRNA-1 |
| chr4_4 | five_prime_UTR | 58627902 | 58627980 | 58627902 | ID=Msa0690750-mRNA-1:five_prime_utr;Parent=Msa0690750-mRNA-1 |
| chr4_4 | CDS | 58627981 | 58628093 | 58627981 | ID=Msa0690750-mRNA-1:cds;Parent=Msa0690750-mRNA-1 |
| chr4_4 | CDS | 58628177 | 58628272 | 58628177 | ID=Msa0690750-mRNA-1:cds;Parent=Msa0690750-mRNA-1 |
| chr4_4 | CDS | 58629655 | 58629703 | 58629655 | ID=Msa0690750-mRNA-1:cds;Parent=Msa0690750-mRNA-1 |
| chr4_4 | CDS | 58629885 | 58629981 | 58629885 | ID=Msa0690750-mRNA-1:cds;Parent=Msa0690750-mRNA-1 |
| chr4_4 | CDS | 58630913 | 58630965 | 58630913 | ID=Msa0690750-mRNA-1:cds;Parent=Msa0690750-mRNA-1 |
| chr4_4 | CDS | 58631076 | 58631138 | 58631076 | ID=Msa0690750-mRNA-1:cds;Parent=Msa0690750-mRNA-1 |
| chr4_4 | CDS | 58631310 | 58631663 | 58631310 | ID=Msa0690750-mRNA-1:cds;Parent=Msa0690750-mRNA-1 |
| chr4_4 | three_prime_UTR | 58631664 | 58632115 | 58631664 | ID=Msa0690750-mRNA-1:three_prime_utr;Parent=Msa0690750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
