AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693260 MtrunA17_Chr4g0043641 95.928 614 8 1 1 614 1 597 0.0 1204
Msa0693260 MtrunA17_Chr2g0312121 69.417 618 160 8 1 609 1 598 0.0 813
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693260 AT5G45030.1 68.810 622 156 12 1 608 1 598 0.0 803
Msa0693260 AT5G45030.2 68.810 622 156 12 1 608 1 598 0.0 803
Msa0693260 AT2G35155.2 68.506 616 143 9 1 604 1 577 0.0 769
Msa0693260 AT2G35155.1 68.506 616 143 9 1 604 1 577 0.0 769
Msa0693260 AT3G12950.1 60.825 582 159 16 48 604 9 546 0.0 655

Find 177 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGCCCTGTTGGCATTATC+TGG 0.105074 4_4:-62166500 Msa0693260:CDS
GCCCTTGAGGTGGGGAATTT+TGG 0.138372 4_4:-62169030 Msa0693260:CDS
TGCTTGAACTTATGACTATT+AGG 0.184449 4_4:-62169209 Msa0693260:CDS
GGTTCTTCTGGCTATGTTGC+AGG 0.232873 4_4:-62169009 Msa0693260:CDS
TCTCCAATCAACAGTCTTAT+TGG 0.236068 4_4:-62166720 Msa0693260:CDS
GAAGACAGGGCTAACTATTT+TGG 0.246035 4_4:-62169300 Msa0693260:CDS
TCTGTATATAATTGTTCTTT+AGG 0.251301 4_4:+62168620 None:intergenic
GGCAATCGACCCAAAGTTTC+AGG 0.261465 4_4:+62169255 None:intergenic
ATTAAAGTTGGAAGAAGTTC+TGG 0.278329 4_4:-62166687 Msa0693260:CDS
CGTTTATTACTGATGATCTT+TGG 0.282970 4_4:-62168261 Msa0693260:CDS
GCTTGAACTTATGACTATTA+GGG 0.290194 4_4:-62169208 Msa0693260:CDS
GGATTGAGAGCTCACCATTC+TGG 0.297569 4_4:-62169489 Msa0693260:CDS
GGGAGTTCTACCTGAAACTT+TGG 0.310248 4_4:-62169265 Msa0693260:CDS
GCAAAGGATGAAACATCTTT+TGG 0.315003 4_4:+62168335 None:intergenic
TCTGACCAGTCAAGAGAATA+AGG 0.317561 4_4:+62166535 None:intergenic
TCGACATGTAGCTGTTGATT+TGG 0.329058 4_4:-62168368 Msa0693260:CDS
CTTCAAGGTCAAACGTTTGC+TGG 0.330723 4_4:+62166571 None:intergenic
TGTTCCATATTCAAACAAAA+AGG 0.337063 4_4:+62165853 None:intergenic
GAACACCTACTGTAAGTTAA+AGG 0.345534 4_4:-62165221 Msa0693260:three_prime_UTR
CGATAGTCAAACCGTCATTA+AGG 0.347794 4_4:-62165807 Msa0693260:CDS
CATCCTTTGCCACCCAGTCT+TGG 0.348079 4_4:-62168322 Msa0693260:CDS
GACCATAGTAGTTTCTTTCC+AGG 0.352728 4_4:+62169436 None:intergenic
AAATAAACAAGGTTCACTTC+TGG 0.354735 4_4:-62165409 Msa0693260:three_prime_UTR
TTGGCACTGCGATTGGATTT+CGG 0.357135 4_4:-62169152 Msa0693260:CDS
CTGTTGAGCTTCAATCTATT+CGG 0.368305 4_4:-62165182 Msa0693260:three_prime_UTR
CAGAGCTTGCTGATGGCTTA+AGG 0.370393 4_4:-62168601 Msa0693260:CDS
CAACTTCTCGATTTCCTGTT+CGG 0.374200 4_4:+62168404 None:intergenic
CCGCCCTGTTGGCATTATCT+GGG 0.377241 4_4:-62166499 Msa0693260:CDS
TCTCTTGACTGGTCAGAATA+GGG 0.378681 4_4:-62166529 Msa0693260:CDS
ACACCACTTGTCCAATTCTC+AGG 0.389026 4_4:+62166429 None:intergenic
TTGAGGAAGCTTTGATGAAC+CGG 0.389652 4_4:+62165697 None:intergenic
AATGGTTCTACTGCTGGAAT+TGG 0.393362 4_4:-62165940 Msa0693260:CDS
ATGCGTTGGCTCTGGTTCTC+AGG 0.395107 4_4:-62168567 Msa0693260:intron
CGAATAGATTGAAGCTCAAC+AGG 0.395263 4_4:+62165183 None:intergenic
ATCGTAGATGGTTCTTCAAC+TGG 0.397446 4_4:+62165826 None:intergenic
GAAACATTTGTTCGAGCTGA+TGG 0.400003 4_4:-62166843 Msa0693260:CDS
CTATGTTGCAGGTTTCTACA+TGG 0.403417 4_4:-62168998 Msa0693260:CDS
GTTGTGGAGTTCTCTTATTA+TGG 0.407586 4_4:-62168659 Msa0693260:CDS
ATGAACTGGTGTTCAACATT+TGG 0.409902 4_4:+62165745 None:intergenic
TTCTCTTGACTGGTCAGAAT+AGG 0.410261 4_4:-62166530 Msa0693260:CDS
ATAAGAGGTGTGGGTGATAT+TGG 0.412482 4_4:-62166768 Msa0693260:CDS
GAAACAAAATTATCTTCATC+AGG 0.419421 4_4:+62165631 None:intergenic
GACGGTTTGACTATCGTAGA+TGG 0.421940 4_4:+62165814 None:intergenic
GCTTTAATTCTTCAATGATA+AGG 0.425897 4_4:+62165558 None:intergenic
GGAATGACGCAGCAGAAGAC+AGG 0.426271 4_4:-62169314 Msa0693260:CDS
CAGCAAACGTTTGACCTTGA+AGG 0.427589 4_4:-62166570 Msa0693260:CDS
TTTAGTCTTGGCACTGCGAT+TGG 0.428958 4_4:-62169159 Msa0693260:CDS
CTTGGACCTGGTGTATATCT+TGG 0.435210 4_4:-62168304 Msa0693260:CDS
CCGCCCCAGATAATGCCAAC+AGG 0.435797 4_4:+62166495 None:intergenic
CGCATAAAGTTCACAGGCAA+TGG 0.438775 4_4:-62169080 Msa0693260:CDS
TTGTTACGAGATCAAGTTCA+AGG 0.439583 4_4:+62166382 None:intergenic
AGCGATTCATGCGTTGGCTC+TGG 0.442737 4_4:-62168575 Msa0693260:CDS
TTTGACTACAGGGACTATAA+TGG 0.443768 4_4:-62166664 Msa0693260:CDS
AGAAGTTCTGGTTTGACTAC+AGG 0.444792 4_4:-62166675 Msa0693260:CDS
ATTACTGATGATCTTTGGTA+TGG 0.447995 4_4:-62168256 Msa0693260:CDS
CCAGATAATGCCAACAGGGC+GGG 0.448428 4_4:+62166500 None:intergenic
TTTGACCTTGAAGGTGATAG+TGG 0.448549 4_4:-62166561 Msa0693260:CDS
TCAATCGGAGGAGTCGGCTC+TGG 0.448629 4_4:-62169460 Msa0693260:CDS
CAAAAGTTTGCATGTGTAAA+GGG 0.448865 4_4:+62169400 None:intergenic
GAGCTTCAATCTATTCGGTA+TGG 0.454176 4_4:-62165177 Msa0693260:three_prime_UTR
CATTGAAGAATTAAAGCAGC+AGG 0.456435 4_4:-62165552 Msa0693260:exon
CTACCTGCTGCCCTTGAGGT+GGG 0.457934 4_4:-62169039 Msa0693260:CDS
TATTATAAGCACTCTTGAAA+GGG 0.460882 4_4:-62165244 Msa0693260:three_prime_UTR
TTTAAAGCTCCACATACTAA+AGG 0.462335 4_4:+62165438 None:intergenic
TTGCCACCCAGTCTTGGACC+TGG 0.464075 4_4:-62168316 Msa0693260:CDS
GGAAGCCTTATTCTCTTGAC+TGG 0.464578 4_4:-62166540 Msa0693260:CDS
GGCAGGCAAGTGATTAAAGT+TGG 0.465112 4_4:-62166699 Msa0693260:CDS
CAAATGAATGGTTCTACTGC+TGG 0.465982 4_4:-62165946 Msa0693260:CDS
GGCTTCCACTATCACCTTCA+AGG 0.466145 4_4:+62166556 None:intergenic
GCAAAAGTTTGCATGTGTAA+AGG 0.467669 4_4:+62169399 None:intergenic
AGAGCTTGCTGATGGCTTAA+GGG 0.468169 4_4:-62168600 Msa0693260:CDS
TCAAAAGTCTATCTGAACTT+AGG 0.471695 4_4:-62165660 Msa0693260:CDS
AACAGGGGCCAGGAGGTGTT+TGG 0.472625 4_4:-62168694 Msa0693260:intron
TGAATTCCAAGTCTTCTTTG+AGG 0.474327 4_4:+62165680 None:intergenic
TCGATTGCCGTCAGGACAGC+AGG 0.474763 4_4:-62169241 Msa0693260:CDS
GCTATTGTTAGAAGCCGAAC+AGG 0.476533 4_4:-62168418 Msa0693260:CDS
CTTGGCCTACATTGAATCGC+TGG 0.479956 4_4:-62169335 Msa0693260:CDS
CAAGAGACATATGGAACCTT+GGG 0.482500 4_4:-62168442 Msa0693260:CDS
TTCCCCACCTCAAGGGCAGC+AGG 0.483181 4_4:+62169036 None:intergenic
CAAAACTTGTTGGTATGAAC+TGG 0.484004 4_4:+62165731 None:intergenic
AAGCTTCCTCAAAGAAGACT+TGG 0.488186 4_4:-62165686 Msa0693260:CDS
CGAACAGGAAATCGAGAAGT+TGG 0.491001 4_4:-62168403 Msa0693260:CDS
GGAGGAGTCGGCTCTGGACC+TGG 0.491608 4_4:-62169454 Msa0693260:CDS
GCTGGAATTGGTTCTACAGT+TGG 0.492581 4_4:-62165928 Msa0693260:CDS
CCTACCTGCTGCCCTTGAGG+TGG 0.495104 4_4:-62169040 Msa0693260:CDS
CTTTCTCATCATTATACTCA+AGG 0.497193 4_4:+62166634 None:intergenic
ATATACACCAGGTCCAAGAC+TGG 0.499323 4_4:+62168309 None:intergenic
GTATTATAAGCACTCTTGAA+AGG 0.499812 4_4:-62165245 Msa0693260:three_prime_UTR
CAGATAATGCCAACAGGGCG+GGG 0.500310 4_4:+62166501 None:intergenic
CCATTCTGGATCAACTCAAT+CGG 0.500907 4_4:-62169475 Msa0693260:CDS
TGTTAAAGTCTTCTGCGAAT+GGG 0.502215 4_4:+62166811 None:intergenic
AGGAGAGCTAACAGATGAAT+CGG 0.502366 4_4:-62169521 None:intergenic
ACTTTGGGTCGATTGCCGTC+AGG 0.503578 4_4:-62169249 Msa0693260:CDS
GGAGTTCTACCTGAAACTTT+GGG 0.504265 4_4:-62169264 Msa0693260:CDS
TACCTGCTGCCCTTGAGGTG+GGG 0.504336 4_4:-62169038 Msa0693260:CDS
CAGATGAATCGGAATCGATT+GGG 0.507056 4_4:-62169510 Msa0693260:CDS
AAACATTTGTTCGAGCTGAT+GGG 0.507807 4_4:-62166842 Msa0693260:CDS
ATGTTAAAGTCTTCTGCGAA+TGG 0.508003 4_4:+62166810 None:intergenic
ACGTCGCACCAAACACCTCC+TGG 0.508347 4_4:+62168686 None:intergenic
AGCTTCAATCTATTCGGTAT+GGG 0.512168 4_4:-62165176 Msa0693260:three_prime_UTR
ATGCCTACCTGCTGCCCTTG+AGG 0.515768 4_4:-62169043 Msa0693260:CDS
CAATCAACAGTCTTATTGGC+AGG 0.517169 4_4:-62166716 Msa0693260:CDS
GACCTGGAAAGAAACTACTA+TGG 0.518176 4_4:-62169438 Msa0693260:CDS
ACAGATGAATCGGAATCGAT+TGG 0.518990 4_4:-62169511 None:intergenic
ATTTCTTGTAAACAGGGGCC+AGG 0.519655 4_4:-62168704 Msa0693260:intron
CAATGTAGGCCAAGAAAAGT+AGG 0.521406 4_4:+62169344 None:intergenic
TCAAGAGACATATGGAACCT+TGG 0.523834 4_4:-62168443 Msa0693260:CDS
CAAGTGGTGTTGACCTTGGA+CGG 0.526076 4_4:-62166416 Msa0693260:CDS
GTTGCAAGTCAAGAGACATA+TGG 0.529263 4_4:-62168451 Msa0693260:CDS
GAAGTTCTGGTTTGACTACA+GGG 0.529598 4_4:-62166674 Msa0693260:CDS
AGGGGAAGCGATTCATGCGT+TGG 0.531667 4_4:-62168581 Msa0693260:CDS
AAGCAAAGGCCTTTAGTATG+TGG 0.534975 4_4:-62165447 Msa0693260:three_prime_UTR
TTGTTGCGCATAAAGTTCAC+AGG 0.536854 4_4:-62169086 Msa0693260:CDS
CTGTTGGCATTATCTGGGGC+GGG 0.537553 4_4:-62166494 Msa0693260:CDS
AATGTAATTACATCTATAAG+AGG 0.538978 4_4:-62166783 Msa0693260:CDS
CTTGAGTATAATGATGAGAA+AGG 0.539050 4_4:-62166633 Msa0693260:CDS
GGTCCAAGACTGGGTGGCAA+AGG 0.540512 4_4:+62168319 None:intergenic
AGTTTGCATGTGTAAAGGGC+TGG 0.544378 4_4:+62169404 None:intergenic
ATCAACTCAATCGGAGGAGT+CGG 0.544805 4_4:-62169466 Msa0693260:CDS
ACCAAAATTCCCCACCTCAA+GGG 0.545097 4_4:+62169029 None:intergenic
AGGGAGAAGCCCCGCCCTGT+TGG 0.546538 4_4:-62166510 Msa0693260:CDS
TGGACAAGTGGTGTTGACCT+TGG 0.549702 4_4:-62166420 Msa0693260:CDS
AACCAAAATTCCCCACCTCA+AGG 0.551920 4_4:+62169028 None:intergenic
CTGCCAATAAGACTGTTGAT+TGG 0.554370 4_4:+62166717 None:intergenic
CCGATTGAGTTGATCCAGAA+TGG 0.554613 4_4:+62169475 None:intergenic
TTTCTCATCATTATACTCAA+GGG 0.557070 4_4:+62166635 None:intergenic
CCTGTTGGCATTATCTGGGG+CGG 0.557596 4_4:-62166495 Msa0693260:CDS
AACATTTGTTCGAGCTGATG+GGG 0.557640 4_4:-62166841 Msa0693260:CDS
CACCACTTGTCCAATTCTCA+GGG 0.562663 4_4:+62166430 None:intergenic
GAGCTTGCTGATGGCTTAAG+GGG 0.565624 4_4:-62168599 Msa0693260:CDS
TCATTCCAGCGATTCAATGT+AGG 0.567273 4_4:+62169330 None:intergenic
ATTGAAGAATTAAAGCAGCA+GGG 0.568516 4_4:-62165551 Msa0693260:exon
CGCCCTGTTGGCATTATCTG+GGG 0.569716 4_4:-62166498 Msa0693260:CDS
ATTACATCTATAAGAGGTGT+GGG 0.575644 4_4:-62166777 Msa0693260:CDS
TTATATACAGAGCTTGCTGA+TGG 0.581462 4_4:-62168608 Msa0693260:CDS
TTCAGGTTCTCCTAAATGCA+AGG 0.582236 4_4:+62165609 None:intergenic
TCGGGGCAAGAGCAAATGAA+TGG 0.582918 4_4:-62165958 Msa0693260:CDS
CCCAGATAATGCCAACAGGG+CGG 0.586699 4_4:+62166499 None:intergenic
AATTCACAAGGCCTTAATGA+CGG 0.588146 4_4:+62165796 None:intergenic
TCGTCGCTTTAGAAAAGCAA+AGG 0.589195 4_4:-62165461 Msa0693260:three_prime_UTR
GTTCTCTTATTATGGTGCAC+CGG 0.591126 4_4:-62168651 Msa0693260:CDS
ATGTGTAAAGGGCTGGATGA+AGG 0.592242 4_4:+62169411 None:intergenic
ACATTCCTTTAACTTACAGT+AGG 0.594805 4_4:+62165216 None:intergenic
GCAACAAAGACAAGAATAGC+TGG 0.595801 4_4:+62169102 None:intergenic
GCTTCTAACAATAGCACCCA+AGG 0.596747 4_4:+62168426 None:intergenic
CCACCTCAAGGGCAGCAGGT+AGG 0.597414 4_4:+62169040 None:intergenic
AATTACATCTATAAGAGGTG+TGG 0.598962 4_4:-62166778 Msa0693260:CDS
GCGATTGGATTTCGGATCAG+AGG 0.599232 4_4:-62169144 Msa0693260:CDS
CGCCCCAGATAATGCCAACA+GGG 0.599609 4_4:+62166496 None:intergenic
TGCAGCATATAAACTCATTG+AGG 0.600323 4_4:-62165508 Msa0693260:three_prime_UTR
AATAGTCATAAGTTCAAGCA+AGG 0.603800 4_4:+62169212 None:intergenic
TTGAAGAATTAAAGCAGCAG+GGG 0.608596 4_4:-62165550 Msa0693260:exon
ATTGGATTTCGGATCAGAGG+AGG 0.612176 4_4:-62169141 Msa0693260:CDS
ATTATAAGCACTCTTGAAAG+GGG 0.613073 4_4:-62165243 Msa0693260:three_prime_UTR
TATACACCAGGTCCAAGACT+GGG 0.615295 4_4:+62168310 None:intergenic
GGTCGTTTGAAACTAAGAGT+TGG 0.615590 4_4:-62166459 Msa0693260:CDS
GGAGATCAAGAAGCCGTCCA+AGG 0.617388 4_4:+62166403 None:intergenic
TGTTCTTTAGGAGTTTGTGC+CGG 0.626199 4_4:+62168632 None:intergenic
CAGCAGGTAGGCATTGAACA+TGG 0.626384 4_4:+62169052 None:intergenic
TGGTGTATATCTTGGTGCAG+TGG 0.629669 4_4:-62168296 Msa0693260:CDS
TTCTGGATCAACTCAATCGG+AGG 0.631741 4_4:-62169472 Msa0693260:CDS
GTAGTAGCCTGCTGTCCTGA+CGG 0.633757 4_4:+62169234 None:intergenic
GAGACTGCAAATCTATGCGG+TGG 0.634596 4_4:+62166739 None:intergenic
GAATGACGCAGCAGAAGACA+GGG 0.639240 4_4:-62169313 Msa0693260:CDS
ACAACAAATGAAGCACTCCA+AGG 0.643602 4_4:-62166363 Msa0693260:intron
ATCATTATACTCAAGGGCAT+AGG 0.644610 4_4:+62166641 None:intergenic
ATAATACAAAGTCTACAAAG+TGG 0.646869 4_4:+62165261 None:intergenic
CCACTTGTCCAATTCTCAGG+GGG 0.658338 4_4:+62166432 None:intergenic
TTGGTGCGACGTAGATGTTG+TGG 0.658994 4_4:-62168675 Msa0693260:CDS
TCTTGTAAACAGGGGCCAGG+AGG 0.664800 4_4:-62168701 Msa0693260:intron
AAACTGATGCTAATGTACAA+GGG 0.688415 4_4:+62165146 None:intergenic
TTTCTGATATGAAATTCACA+AGG 0.697960 4_4:+62165784 None:intergenic
ACCACTTGTCCAATTCTCAG+GGG 0.709383 4_4:+62166431 None:intergenic
ACACCAGGTCCAAGACTGGG+TGG 0.716030 4_4:+62168313 None:intergenic
ACTGCACCAAGATATACACC+AGG 0.724639 4_4:+62168298 None:intergenic
TGGGGCGGGACAGCTAATCG+AGG 0.725183 4_4:-62166480 Msa0693260:CDS
TTGGAGACTGCAAATCTATG+CGG 0.782914 4_4:+62166736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATATTTTTACAGATAAA+TGG + chr4_4:62165858-62165877 None:intergenic 15.0%
!!! TTCCTTATTTAATAAGAATT+GGG + chr4_4:62166729-62166748 None:intergenic 15.0%
!!! TTGAATTACAAATTCTAAAA+TGG + chr4_4:62167364-62167383 None:intergenic 15.0%
!!! TAATCTTTTAGAGTAATTTA+GGG + chr4_4:62167586-62167605 None:intergenic 15.0%
!!! ATAATCTTTTAGAGTAATTT+AGG + chr4_4:62167587-62167606 None:intergenic 15.0%
!! GATTTATACAAGTTTATAAA+AGG - chr4_4:62168384-62168403 Msa0693260:CDS 15.0%
!! GATATAGCAATATTTATTAT+TGG + chr4_4:62168439-62168458 None:intergenic 15.0%
!! TTTATACATTGAAAGAAAAA+AGG + chr4_4:62168588-62168607 None:intergenic 15.0%
!!! TATTTTGGTAATCTTCAAAA+GGG - chr4_4:62165383-62165402 Msa0693260:three_prime_UTR 20.0%
!!! CATTTCATAGTAAGATTTTA+CGG - chr4_4:62165483-62165502 Msa0693260:three_prime_UTR 20.0%
!!! AATGGAATTTATATTGGTTA+AGG + chr4_4:62165840-62165859 None:intergenic 20.0%
!! CAGATAAATGGAATTTATAT+TGG + chr4_4:62165846-62165865 None:intergenic 20.0%
!! TGTTTACAAGAAATAAGAAA+TGG + chr4_4:62165958-62165977 None:intergenic 20.0%
!!! ATTTCTTATTTCTTGTAAAC+AGG - chr4_4:62165957-62165976 Msa0693260:CDS 20.0%
!!! TTTCTTATTTCTTGTAAACA+GGG - chr4_4:62165958-62165977 Msa0693260:CDS 20.0%
!! TCTGTATATAATTGTTCTTT+AGG + chr4_4:62166051-62166070 None:intergenic 20.0%
!! AAAGGTTATATACAAAAAAG+AGG + chr4_4:62166178-62166197 None:intergenic 20.0%
!! AATTTGAAAACAAATTACCT+GGG + chr4_4:62166456-62166475 None:intergenic 20.0%
!! ATAGTAATTTCTTACTGATA+TGG - chr4_4:62166634-62166653 Msa0693260:CDS 20.0%
!!! CTTCCTTATTTAATAAGAAT+TGG + chr4_4:62166730-62166749 None:intergenic 20.0%
!! TTATCTCTTAGGATTAATTT+CGG - chr4_4:62166796-62166815 Msa0693260:CDS 20.0%
!! AATCATATCTCTTAGAATTT+GGG - chr4_4:62166928-62166947 Msa0693260:intron 20.0%
!! CTAAAATAGTTGTTATAAGT+GGG + chr4_4:62167192-62167211 None:intergenic 20.0%
!! TAGTTATAGTTTGATATTGT+TGG + chr4_4:62167471-62167490 None:intergenic 20.0%
!!! TTATGATTTAACTTTCTTGA+AGG - chr4_4:62167762-62167781 Msa0693260:intron 20.0%
!!! TATGATTTAACTTTCTTGAA+GGG - chr4_4:62167763-62167782 Msa0693260:intron 20.0%
!! AATGTAATTACATCTATAAG+AGG - chr4_4:62167885-62167904 Msa0693260:intron 20.0%
!! GAAATGATGTTAGAAATTAT+TGG + chr4_4:62168417-62168436 None:intergenic 20.0%
!!! ACATTAACTTTGTTTATAAC+GGG + chr4_4:62168489-62168508 None:intergenic 20.0%
!!! CACATTAACTTTGTTTATAA+CGG + chr4_4:62168490-62168509 None:intergenic 20.0%
!! AATCATTATCAATTGTTAGT+TGG - chr4_4:62168610-62168629 Msa0693260:CDS 20.0%
!! GTATTCCTCAAATAAATAAA+CGG + chr4_4:62168651-62168670 None:intergenic 20.0%
!! TTAAAAGCGAAAAATAAACA+AGG - chr4_4:62169248-62169267 Msa0693260:CDS 20.0%
!!! TTTTATTTTCATGTTCGATA+AGG - chr4_4:62169299-62169318 Msa0693260:CDS 20.0%
!!! CTATTTTGGTAATCTTCAAA+AGG - chr4_4:62165382-62165401 Msa0693260:three_prime_UTR 25.0%
!! TTGAATTGAAAAGTGTAATG+AGG + chr4_4:62165706-62165725 None:intergenic 25.0%
! AATCTATAAAACCTATCAGT+CGG + chr4_4:62165783-62165802 None:intergenic 25.0%
!!! TGATAGGTTTTATAGATTGT+TGG - chr4_4:62165785-62165804 Msa0693260:CDS 25.0%
!!! GATAGGTTTTATAGATTGTT+GGG - chr4_4:62165786-62165805 Msa0693260:CDS 25.0%
!!! ATAGGTTTTATAGATTGTTG+GGG - chr4_4:62165787-62165806 Msa0693260:CDS 25.0%
!! TTCTTATTTCTTGTAAACAG+GGG - chr4_4:62165959-62165978 Msa0693260:CDS 25.0%
! TTCAAGGAGAAGAAATTAAA+AGG + chr4_4:62166196-62166215 None:intergenic 25.0%
!!! TTTTAATTTCTTCTCCTTGA+AGG - chr4_4:62166195-62166214 Msa0693260:intron 25.0%
! CAATTTGAAAACAAATTACC+TGG + chr4_4:62166457-62166476 None:intergenic 25.0%
!! CATCATGAATATTTTACATG+TGG - chr4_4:62166482-62166501 Msa0693260:CDS 25.0%
! TGATCGATGAAAAAGAATAA+CGG - chr4_4:62166505-62166524 Msa0693260:CDS 25.0%
! ATATGGTGTGAATAATATGT+TGG - chr4_4:62166651-62166670 Msa0693260:CDS 25.0%
! CTCCCAATTCTTATTAAATA+AGG - chr4_4:62166724-62166743 Msa0693260:CDS 25.0%
! TGTTGTATTAGTATAAGTGA+GGG - chr4_4:62166869-62166888 Msa0693260:intron 25.0%
! CAATCATATCTCTTAGAATT+TGG - chr4_4:62166927-62166946 Msa0693260:intron 25.0%
! AATTAAATAGTCTCAACCAT+TGG + chr4_4:62167058-62167077 None:intergenic 25.0%
! GCTAAAATAGTTGTTATAAG+TGG + chr4_4:62167193-62167212 None:intergenic 25.0%
!!! TACAAATTCTAAAATGGTAC+TGG + chr4_4:62167358-62167377 None:intergenic 25.0%
! TTCCATGTATTGAAGTTATA+GGG + chr4_4:62167536-62167555 None:intergenic 25.0%
! TTTCCATGTATTGAAGTTAT+AGG + chr4_4:62167537-62167556 None:intergenic 25.0%
!!! CAAATGGAAACATTTTTCAA+AGG + chr4_4:62167645-62167664 None:intergenic 25.0%
!!! ACAAGTTTGACATTTTTCAA+AGG + chr4_4:62167717-62167736 None:intergenic 25.0%
!! TAACAAAATGGTAATGAGAA+TGG + chr4_4:62167798-62167817 None:intergenic 25.0%
! TTTCTCATCATTATACTCAA+GGG + chr4_4:62168036-62168055 None:intergenic 25.0%
! CAAAATGTGGTTTAATTCAA+AGG - chr4_4:62168336-62168355 Msa0693260:CDS 25.0%
!! TCTTCAAGCTTTTCTTTTAT+TGG + chr4_4:62168785-62168804 None:intergenic 25.0%
! TGTTCCATATTCAAACAAAA+AGG + chr4_4:62168818-62168837 None:intergenic 25.0%
! TTTCTGATATGAAATTCACA+AGG + chr4_4:62168887-62168906 None:intergenic 25.0%
! GAAACAAAATTATCTTCATC+AGG + chr4_4:62169040-62169059 None:intergenic 25.0%
!!! AATTTTGTTTCCTTGCATTT+AGG - chr4_4:62169049-62169068 Msa0693260:CDS 25.0%
! GCTTTAATTCTTCAATGATA+AGG + chr4_4:62169113-62169132 None:intergenic 25.0%
! ATAATACAAAGTCTACAAAG+TGG + chr4_4:62169410-62169429 None:intergenic 25.0%
! TATTATAAGCACTCTTGAAA+GGG - chr4_4:62169424-62169443 Msa0693260:CDS 25.0%
CAAAAGTTTGCATGTGTAAA+GGG + chr4_4:62165271-62165290 None:intergenic 30.0%
AATAGTCATAAGTTCAAGCA+AGG + chr4_4:62165459-62165478 None:intergenic 30.0%
TGCTTGAACTTATGACTATT+AGG - chr4_4:62165459-62165478 Msa0693260:three_prime_UTR 30.0%
GCTTGAACTTATGACTATTA+GGG - chr4_4:62165460-62165479 Msa0693260:three_prime_UTR 30.0%
AGAAAAGAAGAAAAACTGTG+TGG + chr4_4:62165746-62165765 None:intergenic 30.0%
AGTAATTTAATCCGACTGAT+AGG - chr4_4:62165769-62165788 Msa0693260:CDS 30.0%
ATATCATCTCAAAGCCATAA+AGG - chr4_4:62165871-62165890 Msa0693260:CDS 30.0%
CCAACCTATATACCATAAAA+AGG + chr4_4:62165908-62165927 None:intergenic 30.0%
! CCTTTTTATGGTATATAGGT+TGG - chr4_4:62165905-62165924 Msa0693260:CDS 30.0%
CGTTTATTACTGATGATCTT+TGG - chr4_4:62166407-62166426 Msa0693260:CDS 30.0%
ATTACTGATGATCTTTGGTA+TGG - chr4_4:62166412-62166431 Msa0693260:CDS 30.0%
AAAACCTTATAGCTTCAACA+TGG + chr4_4:62166580-62166599 None:intergenic 30.0%
!! TTCCTTTTCCTCTTTTAACT+CGG + chr4_4:62166606-62166625 None:intergenic 30.0%
GTGTTGTATTAGTATAAGTG+AGG - chr4_4:62166868-62166887 Msa0693260:intron 30.0%
ATTAGTATAAGTGAGGGTTA+AGG - chr4_4:62166875-62166894 Msa0693260:intron 30.0%
!! CTAGCTTTTGCGATTATATA+GGG + chr4_4:62166960-62166979 None:intergenic 30.0%
AAATAGTTGTTATAAGTGGG+AGG + chr4_4:62167189-62167208 None:intergenic 30.0%
!! AATTTTGATCTTGGACATGA+GGG + chr4_4:62167249-62167268 None:intergenic 30.0%
!! AAATTTTGATCTTGGACATG+AGG + chr4_4:62167250-62167269 None:intergenic 30.0%
!! CACACTTCAAATTTTGATCT+TGG + chr4_4:62167258-62167277 None:intergenic 30.0%
TTGTTTGGACAACTATTATC+AGG + chr4_4:62167310-62167329 None:intergenic 30.0%
GTTGTCATGAATATGTTGTT+TGG + chr4_4:62167325-62167344 None:intergenic 30.0%
AACCCGAAAATTTAGCTAAA+AGG - chr4_4:62167382-62167401 Msa0693260:intron 30.0%
ACCCGAAAATTTAGCTAAAA+GGG - chr4_4:62167383-62167402 Msa0693260:intron 30.0%
!! ACCCTTTTAGCTAAATTTTC+GGG + chr4_4:62167387-62167406 None:intergenic 30.0%
!! CACCCTTTTAGCTAAATTTT+CGG + chr4_4:62167388-62167407 None:intergenic 30.0%
AAAATTTAGCTAAAAGGGTG+CGG - chr4_4:62167388-62167407 Msa0693260:intron 30.0%
AAAATAGTGGTTAGAAGTGA+GGG + chr4_4:62167419-62167438 None:intergenic 30.0%
AAAAATAGTGGTTAGAAGTG+AGG + chr4_4:62167420-62167439 None:intergenic 30.0%
AGCAATATGGCAAAAAATAG+TGG + chr4_4:62167432-62167451 None:intergenic 30.0%
TACCCTATAACTTCAATACA+TGG - chr4_4:62167531-62167550 Msa0693260:intron 30.0%
! ATACATGGAAACTGATTCTA+AGG - chr4_4:62167546-62167565 Msa0693260:intron 30.0%
! TACATGGAAACTGATTCTAA+GGG - chr4_4:62167547-62167566 Msa0693260:intron 30.0%
! AAGAGATAGTTTTCTGCAAA+TGG + chr4_4:62167661-62167680 None:intergenic 30.0%
ATTTGCAGAAAACTATCTCT+TGG - chr4_4:62167660-62167679 Msa0693260:intron 30.0%
GTTTCTGCAAGATAACAAAA+TGG + chr4_4:62167810-62167829 None:intergenic 30.0%
AATTACATCTATAAGAGGTG+TGG - chr4_4:62167890-62167909 Msa0693260:intron 30.0%
! ATTACATCTATAAGAGGTGT+GGG - chr4_4:62167891-62167910 Msa0693260:intron 30.0%
ATTAAAGTTGGAAGAAGTTC+TGG - chr4_4:62167981-62168000 Msa0693260:intron 30.0%
CTTTCTCATCATTATACTCA+AGG + chr4_4:62168037-62168056 None:intergenic 30.0%
CTTGAGTATAATGATGAGAA+AGG - chr4_4:62168035-62168054 Msa0693260:intron 30.0%
!! CACATTTTGAAAACAAACCT+TGG + chr4_4:62168325-62168344 None:intergenic 30.0%
!! CAAGGTTTGTTTTCAAAATG+TGG - chr4_4:62168323-62168342 Msa0693260:CDS 30.0%
TACAAGTTTATAAAAGGAGC+TGG - chr4_4:62168390-62168409 Msa0693260:CDS 30.0%
ACAAGTTTATAAAAGGAGCT+GGG - chr4_4:62168391-62168410 Msa0693260:CDS 30.0%
TGTATGCATAATCCATAAGA+AGG + chr4_4:62168547-62168566 None:intergenic 30.0%
AAAAAAGGACATTTGTATGC+AGG + chr4_4:62168573-62168592 None:intergenic 30.0%
TAAATAAACGGTTCAGGAAA+GGG + chr4_4:62168639-62168658 None:intergenic 30.0%
ATAAATAAACGGTTCAGGAA+AGG + chr4_4:62168640-62168659 None:intergenic 30.0%
CTCAAATAAATAAACGGTTC+AGG + chr4_4:62168645-62168664 None:intergenic 30.0%
CTGAACCGTTTATTTATTTG+AGG - chr4_4:62168643-62168662 Msa0693260:CDS 30.0%
! TCTAAAATACAGCCAAAGAA+AGG + chr4_4:62168689-62168708 None:intergenic 30.0%
!! CTTTGGCTGTATTTTAGATT+CGG - chr4_4:62168691-62168710 Msa0693260:CDS 30.0%
!! TTTGGCTGTATTTTAGATTC+GGG - chr4_4:62168692-62168711 Msa0693260:CDS 30.0%
! TTTTCTTTTATTGGCACAGT+GGG + chr4_4:62168776-62168795 None:intergenic 30.0%
!! TGAGCCTTTTTGTTTGAATA+TGG - chr4_4:62168811-62168830 Msa0693260:intron 30.0%
TCAAAAGTCTATCTGAACTT+AGG - chr4_4:62169008-62169027 Msa0693260:CDS 30.0%
ATTGAAGAATTAAAGCAGCA+GGG - chr4_4:62169117-62169136 Msa0693260:CDS 30.0%
! TTTAAAGCTCCACATACTAA+AGG + chr4_4:62169233-62169252 None:intergenic 30.0%
AAATAAACAAGGTTCACTTC+TGG - chr4_4:62169259-62169278 Msa0693260:CDS 30.0%
!! AGCTGTGTAGTATTTTAAAG+AGG - chr4_4:62169343-62169362 Msa0693260:CDS 30.0%
GTATTATAAGCACTCTTGAA+AGG - chr4_4:62169423-62169442 Msa0693260:CDS 30.0%
ATTATAAGCACTCTTGAAAG+GGG - chr4_4:62169425-62169444 Msa0693260:CDS 30.0%
! ACATTCCTTTAACTTACAGT+AGG + chr4_4:62169455-62169474 None:intergenic 30.0%
GCAAAAGTTTGCATGTGTAA+AGG + chr4_4:62165272-62165291 None:intergenic 35.0%
! ATTTTACGGCGATTTAGTCT+TGG - chr4_4:62165497-62165516 Msa0693260:three_prime_UTR 35.0%
CCTATATACCATAAAAAGGC+TGG + chr4_4:62165904-62165923 None:intergenic 35.0%
! CCAGCCTTTTTATGGTATAT+AGG - chr4_4:62165901-62165920 Msa0693260:CDS 35.0%
GTTGTGGAGTTCTCTTATTA+TGG - chr4_4:62166009-62166028 Msa0693260:intron 35.0%
!! TTATATACAGAGCTTGCTGA+TGG - chr4_4:62166060-62166079 Msa0693260:intron 35.0%
! AGTTGATTCTCATGAGCAAA+AGG + chr4_4:62166128-62166147 None:intergenic 35.0%
!! GGATGAAACATCTTTTGGTT+CGG + chr4_4:62166331-62166350 None:intergenic 35.0%
! GCAAAGGATGAAACATCTTT+TGG + chr4_4:62166336-62166355 None:intergenic 35.0%
GTTACCATGTTGAAGCTATA+AGG - chr4_4:62166573-62166592 Msa0693260:CDS 35.0%
!! GTTTTAGTCCGAGTTAAAAG+AGG - chr4_4:62166595-62166614 Msa0693260:CDS 35.0%
AGCGTCTTGAATTATCTCTT+AGG - chr4_4:62166785-62166804 Msa0693260:CDS 35.0%
!!! GCTAGCTTTTGCGATTATAT+AGG + chr4_4:62166961-62166980 None:intergenic 35.0%
! TAATCGCAAAAGCTAGCTTA+TGG - chr4_4:62166964-62166983 Msa0693260:intron 35.0%
! AATCGCAAAAGCTAGCTTAT+GGG - chr4_4:62166965-62166984 Msa0693260:intron 35.0%
TCATCCATGTATAGATCCAA+CGG - chr4_4:62167100-62167119 Msa0693260:intron 35.0%
AATCTCACATGACAGTGATA+TGG + chr4_4:62167215-62167234 None:intergenic 35.0%
! ATTTGAAGTGTGAAGTTTGC+AGG - chr4_4:62167266-62167285 Msa0693260:intron 35.0%
! AAATGGTACTGGAATCTTGT+CGG + chr4_4:62167347-62167366 None:intergenic 35.0%
! AAATTTAGCTAAAAGGGTGC+GGG - chr4_4:62167389-62167408 Msa0693260:intron 35.0%
TGCCATATTGCTAATTAACG+TGG - chr4_4:62167440-62167459 Msa0693260:intron 35.0%
GCCATATTGCTAATTAACGT+GGG - chr4_4:62167441-62167460 Msa0693260:intron 35.0%
ACCCACGTTAATTAGCAATA+TGG + chr4_4:62167445-62167464 None:intergenic 35.0%
! ACATGGAAACTGATTCTAAG+GGG - chr4_4:62167548-62167567 Msa0693260:intron 35.0%
!! ATTTTTCAAAGGATTGCCTC+AGG + chr4_4:62167706-62167725 None:intergenic 35.0%
AAACATTTGTTCGAGCTGAT+GGG - chr4_4:62167826-62167845 Msa0693260:intron 35.0%
TGTTAAAGTCTTCTGCGAAT+GGG + chr4_4:62167860-62167879 None:intergenic 35.0%
ATGTTAAAGTCTTCTGCGAA+TGG + chr4_4:62167861-62167880 None:intergenic 35.0%
! TCTCCAATCAACAGTCTTAT+TGG - chr4_4:62167948-62167967 Msa0693260:intron 35.0%
TTTGACTACAGGGACTATAA+TGG - chr4_4:62168004-62168023 Msa0693260:intron 35.0%
! ATCATTATACTCAAGGGCAT+AGG + chr4_4:62168030-62168049 None:intergenic 35.0%
TTGTTACGAGATCAAGTTCA+AGG + chr4_4:62168289-62168308 None:intergenic 35.0%
TGCATAATCCATAAGAAGGT+TGG + chr4_4:62168543-62168562 None:intergenic 35.0%
!! TTGGCTGTATTTTAGATTCG+GGG - chr4_4:62168693-62168712 Msa0693260:intron 35.0%
! CTTTTCTTTTATTGGCACAG+TGG + chr4_4:62168777-62168796 None:intergenic 35.0%
AATTCACAAGGCCTTAATGA+CGG + chr4_4:62168875-62168894 None:intergenic 35.0%
ATGAACTGGTGTTCAACATT+TGG + chr4_4:62168926-62168945 None:intergenic 35.0%
!! CAAAACTTGTTGGTATGAAC+TGG + chr4_4:62168940-62168959 None:intergenic 35.0%
! TTCATACCAACAAGTTTTGC+AGG - chr4_4:62168941-62168960 Msa0693260:intron 35.0%
! GATTTTCCTGCAAAACTTGT+TGG + chr4_4:62168950-62168969 None:intergenic 35.0%
! AAGTTTTGCAGGAAAATCTC+CGG - chr4_4:62168952-62168971 Msa0693260:intron 35.0%
TGAATTCCAAGTCTTCTTTG+AGG + chr4_4:62168991-62169010 None:intergenic 35.0%
CATTGAAGAATTAAAGCAGC+AGG - chr4_4:62169116-62169135 Msa0693260:CDS 35.0%
TTGAAGAATTAAAGCAGCAG+GGG - chr4_4:62169118-62169137 Msa0693260:CDS 35.0%
TGCAGCATATAAACTCATTG+AGG - chr4_4:62169160-62169179 Msa0693260:CDS 35.0%
GAACACCTACTGTAAGTTAA+AGG - chr4_4:62169447-62169466 Msa0693260:CDS 35.0%
CTGTTGAGCTTCAATCTATT+CGG - chr4_4:62169486-62169505 Msa0693260:CDS 35.0%
AGCTTCAATCTATTCGGTAT+GGG - chr4_4:62169492-62169511 Msa0693260:CDS 35.0%
CCATTCTGGATCAACTCAAT+CGG - chr4_4:62165193-62165212 Msa0693260:three_prime_UTR 40.0%
GACCTGGAAAGAAACTACTA+TGG - chr4_4:62165230-62165249 Msa0693260:three_prime_UTR 40.0%
GACCATAGTAGTTTCTTTCC+AGG + chr4_4:62165235-62165254 None:intergenic 40.0%
! CACATGCAAACTTTTGCAGT+TGG - chr4_4:62165275-62165294 Msa0693260:three_prime_UTR 40.0%
CAATGTAGGCCAAGAAAAGT+AGG + chr4_4:62165327-62165346 None:intergenic 40.0%
TCATTCCAGCGATTCAATGT+AGG + chr4_4:62165341-62165360 None:intergenic 40.0%
! GAAGACAGGGCTAACTATTT+TGG - chr4_4:62165368-62165387 Msa0693260:three_prime_UTR 40.0%
GGAGTTCTACCTGAAACTTT+GGG - chr4_4:62165404-62165423 Msa0693260:three_prime_UTR 40.0%
GCAACAAAGACAAGAATAGC+TGG + chr4_4:62165569-62165588 None:intergenic 40.0%
TTGTTGCGCATAAAGTTCAC+AGG - chr4_4:62165582-62165601 Msa0693260:CDS 40.0%
CTATGTTGCAGGTTTCTACA+TGG - chr4_4:62165670-62165689 Msa0693260:CDS 40.0%
!! AGGTTTCTACATGGCTTTAG+TGG - chr4_4:62165679-62165698 Msa0693260:CDS 40.0%
ATACCATAAAAAGGCTGGCA+TGG + chr4_4:62165899-62165918 None:intergenic 40.0%
GTTCTCTTATTATGGTGCAC+CGG - chr4_4:62166017-62166036 Msa0693260:intron 40.0%
! TGTTCTTTAGGAGTTTGTGC+CGG + chr4_4:62166039-62166058 None:intergenic 40.0%
GTTGCAAGTCAAGAGACATA+TGG - chr4_4:62166217-62166236 Msa0693260:intron 40.0%
TCAAGAGACATATGGAACCT+TGG - chr4_4:62166225-62166244 Msa0693260:intron 40.0%
CAAGAGACATATGGAACCTT+GGG - chr4_4:62166226-62166245 Msa0693260:intron 40.0%
CAACTTCTCGATTTCCTGTT+CGG + chr4_4:62166267-62166286 None:intergenic 40.0%
! TCGACATGTAGCTGTTGATT+TGG - chr4_4:62166300-62166319 Msa0693260:intron 40.0%
! CTTTGGTATGGCATTTTTGC+TGG - chr4_4:62166424-62166443 Msa0693260:CDS 40.0%
! ATTTTTGCTGGAACAAACCC+AGG - chr4_4:62166436-62166455 Msa0693260:CDS 40.0%
GCTTCAACATGGTAACAAAG+AGG + chr4_4:62166569-62166588 None:intergenic 40.0%
GTCCGAGTTAAAAGAGGAAA+AGG - chr4_4:62166601-62166620 Msa0693260:CDS 40.0%
GAGATAATTCAAGACGCTCT+AGG + chr4_4:62166783-62166802 None:intergenic 40.0%
! ATCGCAAAAGCTAGCTTATG+GGG - chr4_4:62166966-62166985 Msa0693260:intron 40.0%
ACAACCGTTGGATCTATACA+TGG + chr4_4:62167107-62167126 None:intergenic 40.0%
! TATAGTTTGCGAGTTTCCTG+AGG - chr4_4:62167687-62167706 Msa0693260:intron 40.0%
GAAACATTTGTTCGAGCTGA+TGG - chr4_4:62167825-62167844 Msa0693260:intron 40.0%
AACATTTGTTCGAGCTGATG+GGG - chr4_4:62167827-62167846 Msa0693260:intron 40.0%
! ATAAGAGGTGTGGGTGATAT+TGG - chr4_4:62167900-62167919 Msa0693260:intron 40.0%
TTGGAGACTGCAAATCTATG+CGG + chr4_4:62167935-62167954 None:intergenic 40.0%
CTGCCAATAAGACTGTTGAT+TGG + chr4_4:62167954-62167973 None:intergenic 40.0%
!! CAATCAACAGTCTTATTGGC+AGG - chr4_4:62167952-62167971 Msa0693260:intron 40.0%
!! AGAAGTTCTGGTTTGACTAC+AGG - chr4_4:62167993-62168012 Msa0693260:intron 40.0%
!! GAAGTTCTGGTTTGACTACA+GGG - chr4_4:62167994-62168013 Msa0693260:intron 40.0%
!!! CTCACTGATTTTCTTGTCGT+TGG - chr4_4:62168068-62168087 Msa0693260:intron 40.0%
TTTGACCTTGAAGGTGATAG+TGG - chr4_4:62168107-62168126 Msa0693260:intron 40.0%
TCTGACCAGTCAAGAGAATA+AGG + chr4_4:62168136-62168155 None:intergenic 40.0%
! TTCTCTTGACTGGTCAGAAT+AGG - chr4_4:62168138-62168157 Msa0693260:intron 40.0%
! TCTCTTGACTGGTCAGAATA+GGG - chr4_4:62168139-62168158 Msa0693260:intron 40.0%
! GGTCGTTTGAAACTAAGAGT+TGG - chr4_4:62168209-62168228 Msa0693260:intron 40.0%
! ACAACAAATGAAGCACTCCA+AGG - chr4_4:62168305-62168324 Msa0693260:CDS 40.0%
TCCTGAGACTGAGATGAAAA+CGG + chr4_4:62168514-62168533 None:intergenic 40.0%
GAGTAGAACCAACCTTCTTA+TGG - chr4_4:62168532-62168551 Msa0693260:intron 40.0%
AGAAAGGAAAAGTCAGCTCT+AGG + chr4_4:62168673-62168692 None:intergenic 40.0%
!! GAGCTGACTTTTCCTTTCTT+TGG - chr4_4:62168674-62168693 Msa0693260:CDS 40.0%
! CAAATGAATGGTTCTACTGC+TGG - chr4_4:62168722-62168741 Msa0693260:intron 40.0%
! AATGGTTCTACTGCTGGAAT+TGG - chr4_4:62168728-62168747 Msa0693260:intron 40.0%
ATCGTAGATGGTTCTTCAAC+TGG + chr4_4:62168845-62168864 None:intergenic 40.0%
CGATAGTCAAACCGTCATTA+AGG - chr4_4:62168861-62168880 Msa0693260:intron 40.0%
! TTGAGGAAGCTTTGATGAAC+CGG + chr4_4:62168974-62168993 None:intergenic 40.0%
AAGCTTCCTCAAAGAAGACT+TGG - chr4_4:62168982-62169001 Msa0693260:intron 40.0%
! TTCAGGTTCTCCTAAATGCA+AGG + chr4_4:62169062-62169081 None:intergenic 40.0%
! TGTTTTCTTCTCTTCGCTTC+AGG + chr4_4:62169079-62169098 None:intergenic 40.0%
!! TCGTCGCTTTAGAAAAGCAA+AGG - chr4_4:62169207-62169226 Msa0693260:CDS 40.0%
AAGCAAAGGCCTTTAGTATG+TGG - chr4_4:62169221-62169240 Msa0693260:CDS 40.0%
CGAATAGATTGAAGCTCAAC+AGG + chr4_4:62169488-62169507 None:intergenic 40.0%
GAGCTTCAATCTATTCGGTA+TGG - chr4_4:62169491-62169510 Msa0693260:CDS 40.0%
!! CCGATTGAGTTGATCCAGAA+TGG + chr4_4:62165196-62165215 None:intergenic 45.0%
TTCTGGATCAACTCAATCGG+AGG - chr4_4:62165196-62165215 Msa0693260:three_prime_UTR 45.0%
ATCAACTCAATCGGAGGAGT+CGG - chr4_4:62165202-62165221 Msa0693260:three_prime_UTR 45.0%
ATGTGTAAAGGGCTGGATGA+AGG + chr4_4:62165260-62165279 None:intergenic 45.0%
AGTTTGCATGTGTAAAGGGC+TGG + chr4_4:62165267-62165286 None:intergenic 45.0%
!! GCAATGCTGCCTACTTTTCT+TGG - chr4_4:62165315-62165334 Msa0693260:three_prime_UTR 45.0%
GGGAGTTCTACCTGAAACTT+TGG - chr4_4:62165403-62165422 Msa0693260:three_prime_UTR 45.0%
!! TTTAGTCTTGGCACTGCGAT+TGG - chr4_4:62165509-62165528 Msa0693260:three_prime_UTR 45.0%
TTGGCACTGCGATTGGATTT+CGG - chr4_4:62165516-62165535 Msa0693260:three_prime_UTR 45.0%
ATTGGATTTCGGATCAGAGG+AGG - chr4_4:62165527-62165546 Msa0693260:three_prime_UTR 45.0%
CGCATAAAGTTCACAGGCAA+TGG - chr4_4:62165588-62165607 Msa0693260:CDS 45.0%
ACCAAAATTCCCCACCTCAA+GGG + chr4_4:62165642-62165661 None:intergenic 45.0%
AACCAAAATTCCCCACCTCA+AGG + chr4_4:62165643-62165662 None:intergenic 45.0%
!!! GTGGGGAATTTTGGTTCTTC+TGG - chr4_4:62165647-62165666 Msa0693260:CDS 45.0%
! GAACCATGCCAGCCTTTTTA+TGG - chr4_4:62165893-62165912 Msa0693260:CDS 45.0%
ATTTCTTGTAAACAGGGGCC+AGG - chr4_4:62165964-62165983 Msa0693260:intron 45.0%
!! AGAGCTTGCTGATGGCTTAA+GGG - chr4_4:62166068-62166087 Msa0693260:intron 45.0%
!! CTCTTGACTTGCAACCTTCA+AGG + chr4_4:62166212-62166231 None:intergenic 45.0%
GCTTCTAACAATAGCACCCA+AGG + chr4_4:62166245-62166264 None:intergenic 45.0%
GCTATTGTTAGAAGCCGAAC+AGG - chr4_4:62166250-62166269 Msa0693260:intron 45.0%
CGAACAGGAAATCGAGAAGT+TGG - chr4_4:62166265-62166284 Msa0693260:intron 45.0%
TATACACCAGGTCCAAGACT+GGG + chr4_4:62166361-62166380 None:intergenic 45.0%
ATATACACCAGGTCCAAGAC+TGG + chr4_4:62166362-62166381 None:intergenic 45.0%
CTTGGACCTGGTGTATATCT+TGG - chr4_4:62166364-62166383 Msa0693260:CDS 45.0%
ACTGCACCAAGATATACACC+AGG + chr4_4:62166373-62166392 None:intergenic 45.0%
! TGGTGTATATCTTGGTGCAG+TGG - chr4_4:62166372-62166391 Msa0693260:CDS 45.0%
AGAGTCTGGATGAGTCATAG+AGG - chr4_4:62166537-62166556 Msa0693260:CDS 45.0%
TTGGATCACAGCATGAGAGA+TGG + chr4_4:62167039-62167058 None:intergenic 45.0%
TCTCTCATGCTGTGATCCAA+TGG - chr4_4:62167039-62167058 Msa0693260:intron 45.0%
! CTGATTCTAAGGGGTGATCT+AGG - chr4_4:62167557-62167576 Msa0693260:intron 45.0%
GGCAGGCAAGTGATTAAAGT+TGG - chr4_4:62167969-62167988 Msa0693260:intron 45.0%
CTTCAAGGTCAAACGTTTGC+TGG + chr4_4:62168100-62168119 None:intergenic 45.0%
CAGCAAACGTTTGACCTTGA+AGG - chr4_4:62168098-62168117 Msa0693260:intron 45.0%
!! GGAAGCCTTATTCTCTTGAC+TGG - chr4_4:62168128-62168147 Msa0693260:intron 45.0%
ACCACTTGTCCAATTCTCAG+GGG + chr4_4:62168240-62168259 None:intergenic 45.0%
CACCACTTGTCCAATTCTCA+GGG + chr4_4:62168241-62168260 None:intergenic 45.0%
ACACCACTTGTCCAATTCTC+AGG + chr4_4:62168242-62168261 None:intergenic 45.0%
! TCCGTTTTCATCTCAGTCTC+AGG - chr4_4:62168510-62168529 Msa0693260:intron 45.0%
!! GCTGGAATTGGTTCTACAGT+TGG - chr4_4:62168740-62168759 Msa0693260:intron 45.0%
GACGGTTTGACTATCGTAGA+TGG + chr4_4:62168857-62168876 None:intergenic 45.0%
GGATTGAGAGCTCACCATTC+TGG - chr4_4:62165179-62165198 Msa0693260:three_prime_UTR 50.0%
CTTGGCCTACATTGAATCGC+TGG - chr4_4:62165333-62165352 Msa0693260:three_prime_UTR 50.0%
GAATGACGCAGCAGAAGACA+GGG - chr4_4:62165355-62165374 Msa0693260:three_prime_UTR 50.0%
GGCAATCGACCCAAAGTTTC+AGG + chr4_4:62165416-62165435 None:intergenic 50.0%
GCGATTGGATTTCGGATCAG+AGG - chr4_4:62165524-62165543 Msa0693260:three_prime_UTR 50.0%
!! CAGCAGGTAGGCATTGAACA+TGG + chr4_4:62165619-62165638 None:intergenic 50.0%
! GGTTCTTCTGGCTATGTTGC+AGG - chr4_4:62165659-62165678 Msa0693260:CDS 50.0%
AGGCTGGCATGGTTCCTTTA+TGG + chr4_4:62165888-62165907 None:intergenic 50.0%
TTGGTGCGACGTAGATGTTG+TGG - chr4_4:62165993-62166012 Msa0693260:intron 50.0%
!! CAGAGCTTGCTGATGGCTTA+AGG - chr4_4:62166067-62166086 Msa0693260:intron 50.0%
!! GAGCTTGCTGATGGCTTAAG+GGG - chr4_4:62166069-62166088 Msa0693260:intron 50.0%
AACGGACGAGTCATAGAGTC+TGG - chr4_4:62166523-62166542 Msa0693260:CDS 50.0%
CAAGAGATGATCCTTGTCCG+AGG + chr4_4:62167001-62167020 None:intergenic 50.0%
GACAGATCGCACGAGAAGAT+TGG - chr4_4:62167138-62167157 Msa0693260:intron 50.0%
! GCACGAGAAGATTGGCTGAA+GGG - chr4_4:62167146-62167165 Msa0693260:intron 50.0%
! CACGAGAAGATTGGCTGAAG+GGG - chr4_4:62167147-62167166 Msa0693260:intron 50.0%
GTTATAAGTGGGAGGCAACG+CGG + chr4_4:62167181-62167200 None:intergenic 50.0%
ATCTTGGACATGAGGGACTG+TGG + chr4_4:62167242-62167261 None:intergenic 50.0%
ATCAGGCCACAGCAGATGTT+CGG + chr4_4:62167293-62167312 None:intergenic 50.0%
GAGACTGCAAATCTATGCGG+TGG + chr4_4:62167932-62167951 None:intergenic 50.0%
GGCTTCCACTATCACCTTCA+AGG + chr4_4:62168115-62168134 None:intergenic 50.0%
TTGTCCAATTCTCAGGGGGT+TGG + chr4_4:62168235-62168254 None:intergenic 50.0%
CCACTTGTCCAATTCTCAGG+GGG + chr4_4:62168239-62168258 None:intergenic 50.0%
!! TGGACAAGTGGTGTTGACCT+TGG - chr4_4:62168248-62168267 Msa0693260:CDS 50.0%
!! CAAGTGGTGTTGACCTTGGA+CGG - chr4_4:62168252-62168271 Msa0693260:CDS 50.0%
TCGGGGCAAGAGCAAATGAA+TGG - chr4_4:62168710-62168729 Msa0693260:intron 50.0%
GGAATGACGCAGCAGAAGAC+AGG - chr4_4:62165354-62165373 Msa0693260:three_prime_UTR 55.0%
ACTTTGGGTCGATTGCCGTC+AGG - chr4_4:62165419-62165438 Msa0693260:three_prime_UTR 55.0%
GTAGTAGCCTGCTGTCCTGA+CGG + chr4_4:62165437-62165456 None:intergenic 55.0%
! GCCCTTGAGGTGGGGAATTT+TGG - chr4_4:62165638-62165657 Msa0693260:CDS 55.0%
TCTTGTAAACAGGGGCCAGG+AGG - chr4_4:62165967-62165986 Msa0693260:intron 55.0%
AGGGGAAGCGATTCATGCGT+TGG - chr4_4:62166087-62166106 Msa0693260:intron 55.0%
!! AGCGATTCATGCGTTGGCTC+TGG - chr4_4:62166093-62166112 Msa0693260:intron 55.0%
!! ATGCGTTGGCTCTGGTTCTC+AGG - chr4_4:62166101-62166120 Msa0693260:intron 55.0%
CATCCTTTGCCACCCAGTCT+TGG - chr4_4:62166346-62166365 Msa0693260:intron 55.0%
! TTATGGGGTGAGCGTTGCCT+CGG - chr4_4:62166981-62167000 Msa0693260:intron 55.0%
CCTGCGGTAGTTACAACCGT+TGG + chr4_4:62167119-62167138 None:intergenic 55.0%
CCAACGGTTGTAACTACCGC+AGG - chr4_4:62167116-62167135 Msa0693260:intron 55.0%
TTCTCGTGCGATCTGTCCTG+CGG + chr4_4:62167135-62167154 None:intergenic 55.0%
! CGCACGAGAAGATTGGCTGA+AGG - chr4_4:62167145-62167164 Msa0693260:intron 55.0%
CAGATAATGCCAACAGGGCG+GGG + chr4_4:62168170-62168189 None:intergenic 55.0%
CCAGATAATGCCAACAGGGC+GGG + chr4_4:62168171-62168190 None:intergenic 55.0%
CCCAGATAATGCCAACAGGG+CGG + chr4_4:62168172-62168191 None:intergenic 55.0%
CCGCCCTGTTGGCATTATCT+GGG - chr4_4:62168169-62168188 Msa0693260:intron 55.0%
CGCCCTGTTGGCATTATCTG+GGG - chr4_4:62168170-62168189 Msa0693260:intron 55.0%
CGCCCCAGATAATGCCAACA+GGG + chr4_4:62168175-62168194 None:intergenic 55.0%
CCTGTTGGCATTATCTGGGG+CGG - chr4_4:62168173-62168192 Msa0693260:intron 55.0%
! CTGTTGGCATTATCTGGGGC+GGG - chr4_4:62168174-62168193 Msa0693260:intron 55.0%
TTGGCCAACCCCCTGAGAAT+TGG - chr4_4:62168228-62168247 Msa0693260:intron 55.0%
CCCCCTGAGAATTGGACAAG+TGG - chr4_4:62168236-62168255 Msa0693260:CDS 55.0%
GGAGATCAAGAAGCCGTCCA+AGG + chr4_4:62168268-62168287 None:intergenic 55.0%
! TCAATCGGAGGAGTCGGCTC+TGG - chr4_4:62165208-62165227 Msa0693260:three_prime_UTR 60.0%
TCGATTGCCGTCAGGACAGC+AGG - chr4_4:62165427-62165446 Msa0693260:three_prime_UTR 60.0%
ATGCCTACCTGCTGCCCTTG+AGG - chr4_4:62165625-62165644 Msa0693260:CDS 60.0%
CTACCTGCTGCCCTTGAGGT+GGG - chr4_4:62165629-62165648 Msa0693260:CDS 60.0%
TACCTGCTGCCCTTGAGGTG+GGG - chr4_4:62165630-62165649 Msa0693260:CDS 60.0%
!! AACAGGGGCCAGGAGGTGTT+TGG - chr4_4:62165974-62165993 Msa0693260:intron 60.0%
ACGTCGCACCAAACACCTCC+TGG + chr4_4:62165985-62166004 None:intergenic 60.0%
GGTCCAAGACTGGGTGGCAA+AGG + chr4_4:62166352-62166371 None:intergenic 60.0%
TTGCCACCCAGTCTTGGACC+TGG - chr4_4:62166352-62166371 Msa0693260:intron 60.0%
ACACCAGGTCCAAGACTGGG+TGG + chr4_4:62166358-62166377 None:intergenic 60.0%
AGTGGGAGGCAACGCGGATT+CGG + chr4_4:62167175-62167194 None:intergenic 60.0%
GCAGGACCGAACATCTGCTG+TGG - chr4_4:62167284-62167303 Msa0693260:intron 60.0%
CCCGCCCTGTTGGCATTATC+TGG - chr4_4:62168168-62168187 Msa0693260:intron 60.0%
CCGCCCCAGATAATGCCAAC+AGG + chr4_4:62168176-62168195 None:intergenic 60.0%
CCACCTCAAGGGCAGCAGGT+AGG + chr4_4:62165631-62165650 None:intergenic 65.0%
CCTACCTGCTGCCCTTGAGG+TGG - chr4_4:62165628-62165647 Msa0693260:CDS 65.0%
TTCCCCACCTCAAGGGCAGC+AGG + chr4_4:62165635-62165654 None:intergenic 65.0%
! GGTGAGCGTTGCCTCGGACA+AGG - chr4_4:62166987-62167006 Msa0693260:intron 65.0%
TGGGGCGGGACAGCTAATCG+AGG - chr4_4:62168188-62168207 Msa0693260:intron 65.0%
!! GGAGGAGTCGGCTCTGGACC+TGG - chr4_4:62165214-62165233 Msa0693260:three_prime_UTR 70.0%
AGGGAGAAGCCCCGCCCTGT+TGG - chr4_4:62168158-62168177 Msa0693260:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62165161 62169529 62165161 ID=Msa0693260;Name=Msa0693260
chr4_4 mRNA 62165161 62169529 62165161 ID=Msa0693260-mRNA-1;Parent=Msa0693260;Name=Msa0693260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.8|1|1|1|5|400|614
chr4_4 exon 62165161 62165982 62165161 ID=Msa0693260-mRNA-1:exon:17335;Parent=Msa0693260-mRNA-1
chr4_4 exon 62166364 62166864 62166364 ID=Msa0693260-mRNA-1:exon:17334;Parent=Msa0693260-mRNA-1
chr4_4 exon 62168233 62168473 62168233 ID=Msa0693260-mRNA-1:exon:17333;Parent=Msa0693260-mRNA-1
chr4_4 exon 62168568 62168711 62168568 ID=Msa0693260-mRNA-1:exon:17332;Parent=Msa0693260-mRNA-1
chr4_4 exon 62168993 62169529 62168993 ID=Msa0693260-mRNA-1:exon:17331;Parent=Msa0693260-mRNA-1
chr4_4 CDS 62168993 62169529 62168993 ID=Msa0693260-mRNA-1:cds;Parent=Msa0693260-mRNA-1
chr4_4 CDS 62168568 62168711 62168568 ID=Msa0693260-mRNA-1:cds;Parent=Msa0693260-mRNA-1
chr4_4 CDS 62168233 62168473 62168233 ID=Msa0693260-mRNA-1:cds;Parent=Msa0693260-mRNA-1
chr4_4 CDS 62166364 62166864 62166364 ID=Msa0693260-mRNA-1:cds;Parent=Msa0693260-mRNA-1
chr4_4 CDS 62165561 62165982 62165561 ID=Msa0693260-mRNA-1:cds;Parent=Msa0693260-mRNA-1
chr4_4 three_prime_UTR 62165161 62165560 62165161 ID=Msa0693260-mRNA-1:three_prime_utr;Parent=Msa0693260-mRNA-1
Gene Sequence

>Msa0693260

ATGAATCGGAATCGATTGGGATTGAGAGCTCACCATTCTGGATCAACTCAATCGGAGGAGTCGGCTCTGGACCTGGAAAGAAACTACTATGGTCATCCTTCATCCAGCCCTTTACACATGCAAACTTTTGCAGTTGGTGTTCAACATTCTGAGAGCAATGCTGCCTACTTTTCTTGGCCTACATTGAATCGCTGGAATGACGCAGCAGAAGACAGGGCTAACTATTTTGGTAATCTTCAAAAGGGAGTTCTACCTGAAACTTTGGGTCGATTGCCGTCAGGACAGCAGGCTACTACCTTGCTTGAACTTATGACTATTAGGGCATTTCATAGTAAGATTTTACGGCGATTTAGTCTTGGCACTGCGATTGGATTTCGGATCAGAGGAGGTGCTTTGACTGATATTCCAGCTATTCTTGTCTTTGTTGCGCATAAAGTTCACAGGCAATGGCTCAACCATGTTCAATGCCTACCTGCTGCCCTTGAGGTGGGGAATTTTGGTTCTTCTGGCTATGTTGCAGGTTTCTACATGGCTTTAGGGCCAGGAGGTGTTTGGTGCGACGTAGATGTTGTGGAGTTCTCTTATTATGGTGCACCGGCACAAACTCCTAAAGAACAATTATATACAGAGCTTGCTGATGGCTTAAGGGGAAGCGATTCATGCGTTGGCTCTGGTTCTCAGGTTGCAAGTCAAGAGACATATGGAACCTTGGGTGCTATTGTTAGAAGCCGAACAGGAAATCGAGAAGTTGGTTTTCTAACAAATCGACATGTAGCTGTTGATTTGGACTATCCGAACCAAAAGATGTTTCATCCTTTGCCACCCAGTCTTGGACCTGGTGTATATCTTGGTGCAGTGGAGAGAGCAACATCGTTTATTACTGATGATCTTTGGTATGGCATTTTTGCTGGAACAAACCCAGAAACATTTGTTCGAGCTGATGGGGCATTCATCCCATTCGCAGAAGACTTTAACATGAACAATGTAATTACATCTATAAGAGGTGTGGGTGATATTGGTGAAGTCCACCGCATAGATTTGCAGTCTCCAATCAACAGTCTTATTGGCAGGCAAGTGATTAAAGTTGGAAGAAGTTCTGGTTTGACTACAGGGACTATAATGGCCTATGCCCTTGAGTATAATGATGAGAAAGGTATTTGTTTTCTCACTGATTTTCTTGTCGTTGGTGAGAACCAGCAAACGTTTGACCTTGAAGGTGATAGTGGAAGCCTTATTCTCTTGACTGGTCAGAATAGGGAGAAGCCCCGCCCTGTTGGCATTATCTGGGGCGGGACAGCTAATCGAGGTCGTTTGAAACTAAGAGTTGGCCAACCCCCTGAGAATTGGACAAGTGGTGTTGACCTTGGACGGCTTCTTGATCTCCTTGAACTTGATCTCGTAACAACAAATGAAGCACTCCAAGATTCGGGGCAAGAGCAAATGAATGGTTCTACTGCTGGAATTGGTTCTACAGTTGGAGAATCATCTCCCACTGTGCCAATAAAAGAAAAGCTTGAAGAGAGCTTTGAGCCTTTTTGTTTGAATATGGAACACGTTCCAGTTGAAGAACCATCTACGATAGTCAAACCGTCATTAAGGCCTTGTGAATTTCATATCAGAAATGAGATTGAAACAGTTCCAAATGTTGAACACCAGTTCATACCAACAAGTTTTGCAGGAAAATCTCCGGTTCATCAAAGCTTCCTCAAAGAAGACTTGGAATTCAAAAGTCTATCTGAACTTAGGAATGAACCTGATGAAGATAATTTTGTTTCCTTGCATTTAGGAGAACCTGAAGCGAAGAGAAGAAAACATTCAAATTCTTCCTTATCATTGAAGAATTAA
Protein sequence

>Msa0693260

MNRNRLGLRAHHSGSTQSEESALDLERNYYGHPSSSPLHMQTFAVGVQHSESNAAYFSWPTLNRWNDAAEDRANYFGNLQKGVLPETLGRLPSGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRGGALTDIPAILVFVAHKVHRQWLNHVQCLPAALEVGNFGSSGYVAGFYMALGPGGVWCDVDVVEFSYYGAPAQTPKEQLYTELADGLRGSDSCVGSGSQVASQETYGTLGAIVRSRTGNREVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNMNNVITSIRGVGDIGEVHRIDLQSPINSLIGRQVIKVGRSSGLTTGTIMAYALEYNDEKGICFLTDFLVVGENQQTFDLEGDSGSLILLTGQNREKPRPVGIIWGGTANRGRLKLRVGQPPENWTSGVDLGRLLDLLELDLVTTNEALQDSGQEQMNGSTAGIGSTVGESSPTVPIKEKLEESFEPFCLNMEHVPVEEPSTIVKPSLRPCEFHIRNEIETVPNVEHQFIPTSFAGKSPVHQSFLKEDLEFKSLSELRNEPDEDNFVSLHLGEPEAKRRKHSNSSLSLKN*