Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691080 | XP_003607447.1 | 69.592 | 319 | 32 | 6 | 1 | 316 | 1 | 257 | 1.84e-130 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691080 | G7JST7 | 69.592 | 319 | 32 | 6 | 1 | 316 | 1 | 257 | 8.81e-131 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002140 | Msa0691080 | 0.800805 | 1.212900e-48 | -8.615850e-47 |
| Msa0020630 | Msa0691080 | 0.808829 | 2.555256e-50 | -8.615850e-47 |
| Msa0021740 | Msa0691080 | 0.803517 | 3.356983e-49 | -8.615850e-47 |
| Msa0040550 | Msa0691080 | -0.807394 | 5.164971e-50 | -8.615850e-47 |
| Msa0070740 | Msa0691080 | 0.821152 | 4.699160e-53 | -8.615850e-47 |
| Msa0083550 | Msa0691080 | 0.829797 | 4.210519e-55 | -8.615850e-47 |
| Msa0089530 | Msa0691080 | 0.808615 | 2.838390e-50 | -8.615850e-47 |
| Msa0109490 | Msa0691080 | 0.803279 | 3.760073e-49 | -8.615850e-47 |
| Msa0633720 | Msa0691080 | 0.806390 | 8.419769e-50 | -8.615850e-47 |
| Msa0657860 | Msa0691080 | 0.806829 | 6.800735e-50 | -8.615850e-47 |
| Msa0691080 | Msa0693260 | 0.806488 | 8.027649e-50 | -8.615850e-47 |
| Msa0691080 | Msa0727300 | 0.804282 | 2.328419e-49 | -8.615850e-47 |
| Msa0691080 | Msa0775580 | 0.812733 | 3.654242e-51 | -8.615850e-47 |
| Msa0691080 | Msa0828570 | 0.803955 | 2.722253e-49 | -8.615850e-47 |
| Msa0691080 | Msa0970050 | 0.834073 | 3.700777e-56 | -8.615850e-47 |
| Msa0691080 | Msa1004260 | 0.800098 | 1.690346e-48 | -8.615850e-47 |
| Msa0691080 | Msa1026720 | 0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0691080 | Msa1081700 | 0.801026 | 1.093462e-48 | -8.615850e-47 |
| Msa0691080 | Msa1131900 | 0.807612 | 4.643270e-50 | -8.615850e-47 |
| Msa0691080 | Msa1237260 | 0.803052 | 4.190279e-49 | -8.615850e-47 |
| Msa0691080 | Msa1264560 | 0.810007 | 1.427584e-50 | -8.615850e-47 |
| Msa0691080 | Msa1296960 | -0.804479 | 2.117674e-49 | -8.615850e-47 |
| Msa0691080 | Msa1401070 | -0.804492 | 2.104909e-49 | -8.615850e-47 |
| Msa0691080 | Msa1438270 | 0.819153 | 1.348446e-52 | -8.615850e-47 |
| Msa0691080 | Msa1454290 | -0.804012 | 2.649391e-49 | -8.615850e-47 |
| Msa0691080 | Msa1460310 | -0.802711 | 4.927782e-49 | -8.615850e-47 |
| Msa0159750 | Msa0691080 | 0.806326 | 8.684588e-50 | -8.615850e-47 |
| Msa0185640 | Msa0691080 | -0.803226 | 3.856438e-49 | -8.615850e-47 |
| Msa0404690 | Msa0691080 | 0.802982 | 4.332365e-49 | -8.615850e-47 |
| Msa0412540 | Msa0691080 | 0.812085 | 5.061840e-51 | -8.615850e-47 |
| Msa0447040 | Msa0691080 | -0.800055 | 1.724570e-48 | -8.615850e-47 |
| Msa0302990 | Msa0691080 | -0.803429 | 3.500988e-49 | -8.615850e-47 |
| Msa0535020 | Msa0691080 | 0.844225 | 8.625177e-59 | -8.615850e-47 |
| Msa0535050 | Msa0691080 | 0.846919 | 1.604882e-59 | -8.615850e-47 |
| Msa0563140 | Msa0691080 | 0.830414 | 2.976124e-55 | -8.615850e-47 |
| Msa0591780 | Msa0691080 | 0.823503 | 1.337115e-53 | -8.615850e-47 |
| Msa0600820 | Msa0691080 | 0.841650 | 4.179257e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691080 | MtrunA17_Chr4g0040021 | 69.592 | 319 | 32 | 6 | 1 | 316 | 1 | 257 | 1.70e-134 | 382 |
| Msa0691080 | MtrunA17_Chr3g0129141 | 47.115 | 104 | 51 | 2 | 83 | 183 | 67 | 169 | 1.83e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691080 | AT1G08530.2 | 61.983 | 121 | 37 | 4 | 51 | 165 | 59 | 176 | 1.32e-35 | 127 |
| Msa0691080 | AT1G08530.1 | 39.405 | 269 | 87 | 13 | 51 | 313 | 59 | 257 | 1.82e-35 | 129 |
| Msa0691080 | AT1G08530.3 | 61.667 | 120 | 37 | 4 | 51 | 164 | 59 | 175 | 1.72e-34 | 126 |
| Msa0691080 | AT5G09995.1 | 51.456 | 103 | 37 | 2 | 75 | 164 | 64 | 166 | 3.03e-24 | 98.2 |
| Msa0691080 | AT5G09995.3 | 51.456 | 103 | 37 | 2 | 75 | 164 | 64 | 166 | 4.61e-24 | 99.0 |
| Msa0691080 | AT5G09995.2 | 51.456 | 103 | 37 | 2 | 75 | 164 | 64 | 166 | 4.70e-24 | 99.0 |
Find 81 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAGAATTCAGTGATTTA+AGG | 0.145542 | 4_4:-59024136 | Msa0691080:intron |
| GTTAAGCTTAGGAGAATTAA+AGG | 0.197857 | 4_4:+59026346 | None:intergenic |
| ATCTTCGGTTATAATGTAAA+AGG | 0.217382 | 4_4:-59020468 | Msa0691080:three_prime_UTR |
| TATGGAATTCATGGTGAATT+AGG | 0.224410 | 4_4:+59026598 | None:intergenic |
| ATACCTTTCGGATGTATTAT+TGG | 0.231218 | 4_4:-59022445 | Msa0691080:CDS |
| ATGGCTGCTATGAGGCTTTC+AGG | 0.233469 | 4_4:-59024179 | Msa0691080:CDS |
| AACAGGTTGCAGAGATATTT+CGG | 0.239317 | 4_4:+59020721 | None:intergenic |
| ATACCTTCCCACACTATATT+AGG | 0.247154 | 4_4:+59020516 | None:intergenic |
| ATTTCATCTTGTTCCTCTAA+TGG | 0.255078 | 4_4:-59026449 | Msa0691080:CDS |
| AGCTTGATGAACATGATTTC+AGG | 0.284276 | 4_4:-59020647 | Msa0691080:CDS |
| TAGAAGAGATGAAGAGAAAA+TGG | 0.289595 | 4_4:+59026492 | None:intergenic |
| ATACAGATACGGAAATAAAA+TGG | 0.302157 | 4_4:-59022404 | Msa0691080:CDS |
| AGGAACAAGATGAAATGAAT+TGG | 0.324863 | 4_4:+59026456 | None:intergenic |
| GCTTTGCAAGCAGCAGAAAC+TGG | 0.326443 | 4_4:-59022071 | Msa0691080:CDS |
| TCCGAAAGGTATCCGGATTC+CGG | 0.329694 | 4_4:+59022456 | None:intergenic |
| AACTTCATCTGAAGAATTGC+TGG | 0.335169 | 4_4:+59026424 | None:intergenic |
| ACAGGTTGCAGAGATATTTC+GGG | 0.348410 | 4_4:+59020722 | None:intergenic |
| GGAACAAGATGAAATGAATT+GGG | 0.353492 | 4_4:+59026457 | None:intergenic |
| TCCGGAATCCGGATACCTTT+CGG | 0.358894 | 4_4:-59022457 | Msa0691080:CDS |
| CATCAGAGATTTAGCCCTTA+AGG | 0.374911 | 4_4:-59022370 | Msa0691080:CDS |
| TGGCAAAATTTGAATATCTT+CGG | 0.379687 | 4_4:-59020483 | Msa0691080:three_prime_UTR |
| TCTCTGCAACCTGTTGTTGT+AGG | 0.395694 | 4_4:-59020713 | Msa0691080:CDS |
| AGAAGATATAATCTTCCTTA+AGG | 0.411280 | 4_4:+59022355 | None:intergenic |
| CTTGCAGCTCCTACAACAAC+AGG | 0.413263 | 4_4:+59020704 | None:intergenic |
| ACGTAATGAAGAAGTGAGTA+TGG | 0.421039 | 4_4:+59026580 | None:intergenic |
| GTATCGTATCGGTGCATCAT+AGG | 0.425955 | 4_4:+59023472 | None:intergenic |
| AGAATTGCTGGATCCATTAG+AGG | 0.430075 | 4_4:+59026436 | None:intergenic |
| AAACAGATGCATCCGGAATC+CGG | 0.437322 | 4_4:-59022468 | Msa0691080:intron |
| GAAGATATAATCTTCCTTAA+GGG | 0.444902 | 4_4:+59022356 | None:intergenic |
| AAGTTCCTCACGAGCTGTAT+CGG | 0.448420 | 4_4:+59024211 | None:intergenic |
| TGATAGAAAACTTACAAATA+GGG | 0.448957 | 4_4:+59025318 | None:intergenic |
| TCAGCTGAAACGAGTTAAAT+CGG | 0.459031 | 4_4:-59026647 | Msa0691080:five_prime_UTR |
| TCATCAAGCTCTTTGTTGCT+CGG | 0.460624 | 4_4:+59020660 | None:intergenic |
| TAATACATCCGAAAGGTATC+CGG | 0.474294 | 4_4:+59022449 | None:intergenic |
| TGGCTGCTATGAGGCTTTCA+GGG | 0.478870 | 4_4:-59024178 | Msa0691080:CDS |
| CAGACTTCAGTGGCATTCAC+TGG | 0.482597 | 4_4:-59025364 | Msa0691080:CDS |
| GAAACTGGAATTCGACATAT+CGG | 0.482730 | 4_4:-59022056 | Msa0691080:CDS |
| TGAGTATAACAGTGACCTAC+AGG | 0.491498 | 4_4:-59020378 | Msa0691080:three_prime_UTR |
| GTGTCTTAATACTGTGAGAA+TGG | 0.494934 | 4_4:-59020428 | Msa0691080:three_prime_UTR |
| AGAAGTGAGTATGGAATTCA+TGG | 0.496109 | 4_4:+59026589 | None:intergenic |
| TCTCGCATTCATTGCTTGCA+CGG | 0.504199 | 4_4:-59026300 | Msa0691080:intron |
| TCTTCGGTTATAATGTAAAA+GGG | 0.506338 | 4_4:-59020467 | Msa0691080:three_prime_UTR |
| TGGTCACTGAAGTTAAGCTT+AGG | 0.506859 | 4_4:+59026335 | None:intergenic |
| ATTCGCTCTCTCTTCAATCA+TGG | 0.506919 | 4_4:+59020748 | None:intergenic |
| CTCATAGCAGCCATGGTGCT+CGG | 0.513430 | 4_4:+59024188 | None:intergenic |
| TATGAACGAGATAGAGTTGG+AGG | 0.513895 | 4_4:-59026751 | Msa0691080:five_prime_UTR |
| TGCTATGAGGCTTTCAGGGA+TGG | 0.535004 | 4_4:-59024174 | Msa0691080:CDS |
| TGATATGAACGAGATAGAGT+TGG | 0.543304 | 4_4:-59026754 | Msa0691080:five_prime_UTR |
| GAATTAAAGGAAGGAACTTG+AGG | 0.544279 | 4_4:+59026359 | None:intergenic |
| GATGAACATGATTTCAGGAA+GGG | 0.554707 | 4_4:-59020642 | Msa0691080:CDS |
| CGAGCACCATGGCTGCTATG+AGG | 0.556860 | 4_4:-59024187 | Msa0691080:CDS |
| CGTATCTGTATCGGATACGT+TGG | 0.560319 | 4_4:+59022416 | None:intergenic |
| AGAAAGACTTCTAGAGCAGT+TGG | 0.562509 | 4_4:-59020683 | Msa0691080:CDS |
| ATGCGAGAAGAAAGAAAGCT+TGG | 0.567862 | 4_4:+59026315 | None:intergenic |
| ATGTTGTAGTTGAAGTGTGT+GGG | 0.567926 | 4_4:+59026552 | None:intergenic |
| GTATCTGTATCGGATACGTT+GGG | 0.568110 | 4_4:+59022417 | None:intergenic |
| ACTAGATTACAATGAGAAGA+GGG | 0.575460 | 4_4:+59020333 | None:intergenic |
| GGGAAGGTATTGAAAAGTAA+TGG | 0.576809 | 4_4:-59020503 | Msa0691080:three_prime_UTR |
| CAACGTATCCGATACAGATA+CGG | 0.578421 | 4_4:-59022415 | Msa0691080:CDS |
| TACTAGATTACAATGAGAAG+AGG | 0.581229 | 4_4:+59020332 | None:intergenic |
| GAACAAGATGAAATGAATTG+GGG | 0.586685 | 4_4:+59026458 | None:intergenic |
| ATTGTCTCTGCAGACTTCAG+TGG | 0.589317 | 4_4:-59025374 | Msa0691080:intron |
| CACCGATACGATACGAGTAT+CGG | 0.591610 | 4_4:-59023463 | Msa0691080:CDS |
| TAGAAAACTTACAAATAGGG+TGG | 0.592421 | 4_4:+59025321 | None:intergenic |
| AGCTTAGGAGAATTAAAGGA+AGG | 0.592909 | 4_4:+59026350 | None:intergenic |
| TGAAAGCCTCATAGCAGCCA+TGG | 0.594421 | 4_4:+59024181 | None:intergenic |
| ACTTACAAATAGGGTGGGAA+CGG | 0.604684 | 4_4:+59025327 | None:intergenic |
| TGATGAACATGATTTCAGGA+AGG | 0.611868 | 4_4:-59020643 | Msa0691080:CDS |
| ATCCGATACTCGTATCGTAT+CGG | 0.615575 | 4_4:+59023461 | None:intergenic |
| AGAAAACTTACAAATAGGGT+GGG | 0.618122 | 4_4:+59025322 | None:intergenic |
| ATTAGCCAGGAAATAACAGA+AGG | 0.629328 | 4_4:-59022113 | Msa0691080:intron |
| AATGTGTCCTAATATAGTGT+GGG | 0.630740 | 4_4:-59020523 | Msa0691080:three_prime_UTR |
| GCTAGCCGATACAGCTCGTG+AGG | 0.632890 | 4_4:-59024216 | Msa0691080:CDS |
| AATTCGACATATCGGTTCAG+TGG | 0.637592 | 4_4:-59022048 | Msa0691080:CDS |
| TGTCCTAATATAGTGTGGGA+AGG | 0.637749 | 4_4:-59020519 | Msa0691080:three_prime_UTR |
| TAATGTGTCCTAATATAGTG+TGG | 0.644069 | 4_4:-59020524 | Msa0691080:three_prime_UTR |
| GATGTTGTAGTTGAAGTGTG+TGG | 0.655040 | 4_4:+59026551 | None:intergenic |
| TGAGGAACTTCCGAGCACCA+TGG | 0.663337 | 4_4:-59024198 | Msa0691080:CDS |
| GCTACATAAAAGAAGTGCAG+TGG | 0.664730 | 4_4:-59020406 | Msa0691080:three_prime_UTR |
| ATGCCAATAATACATCCGAA+AGG | 0.679314 | 4_4:+59022442 | None:intergenic |
| GTATCGGATATATCGATATG+CGG | 0.736253 | 4_4:-59023447 | Msa0691080:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAGAGTATGAAAATT+AGG | + | chr4_4:59021014-59021033 | None:intergenic | 15.0% |
| !! | AATATTACAAATGATAAAAG+AGG | + | chr4_4:59021889-59021908 | None:intergenic | 15.0% |
| !! | TGCTATTAAAGAAAATAAAT+GGG | + | chr4_4:59022505-59022524 | None:intergenic | 15.0% |
| !! | ATGCTATTAAAGAAAATAAA+TGG | + | chr4_4:59022506-59022525 | None:intergenic | 15.0% |
| !! | TAATAGCATCATAAAATTAT+TGG | - | chr4_4:59022517-59022536 | Msa0691080:intron | 15.0% |
| !! | AGAACTATTAAAATTAAGTA+AGG | + | chr4_4:59023727-59023746 | None:intergenic | 15.0% |
| !! | AATTAAACAAATTTGAATTG+AGG | + | chr4_4:59023792-59023811 | None:intergenic | 15.0% |
| !! | AAGATAAAATTAACAAAATC+TGG | + | chr4_4:59023918-59023937 | None:intergenic | 15.0% |
| !!! | TAGAAGTAATTTTTTTTTGT+AGG | - | chr4_4:59024105-59024124 | Msa0691080:intron | 15.0% |
| !!! | AGAAGTAATTTTTTTTTGTA+GGG | - | chr4_4:59024106-59024125 | Msa0691080:intron | 15.0% |
| !! | AAACCTATTAAAATTAAGTA+AGG | - | chr4_4:59024135-59024154 | Msa0691080:intron | 15.0% |
| !!! | AATAAAACTTTAAAAGAAGA+AGG | - | chr4_4:59024314-59024333 | Msa0691080:intron | 15.0% |
| !! | AAACAAAAAGCAAAAAATTA+CGG | + | chr4_4:59024520-59024539 | None:intergenic | 15.0% |
| !! | TAAGCTATTTATATAACAAA+AGG | - | chr4_4:59025110-59025129 | Msa0691080:intron | 15.0% |
| !! | TCATGATCTTAAAAATTATT+GGG | + | chr4_4:59026743-59026762 | None:intergenic | 15.0% |
| !! | ATCATGATCTTAAAAATTAT+TGG | + | chr4_4:59026744-59026763 | None:intergenic | 15.0% |
| !!! | TTTCATACTCTTTTTTACTT+AGG | - | chr4_4:59021017-59021036 | Msa0691080:intron | 20.0% |
| !! | CAAATAGAAAGATAAATTCA+AGG | + | chr4_4:59021574-59021593 | None:intergenic | 20.0% |
| !! | TGATAGAAAACTTACAAATA+GGG | + | chr4_4:59021695-59021714 | None:intergenic | 20.0% |
| !!! | CCAAGAAAAAATATTTTGTT+TGG | + | chr4_4:59022142-59022161 | None:intergenic | 20.0% |
| !!! | CCAAACAAAATATTTTTTCT+TGG | - | chr4_4:59022139-59022158 | Msa0691080:intron | 20.0% |
| !!! | AACAAAATATTTTTTCTTGG+AGG | - | chr4_4:59022142-59022161 | Msa0691080:intron | 20.0% |
| !!! | ACAAAATATTTTTTCTTGGA+GGG | - | chr4_4:59022143-59022162 | Msa0691080:intron | 20.0% |
| !! | TTTCTTCATTTAGCAATTAT+TGG | - | chr4_4:59022567-59022586 | Msa0691080:intron | 20.0% |
| !! | ATCCTCATATTTATCTTATT+AGG | - | chr4_4:59022667-59022686 | Msa0691080:intron | 20.0% |
| !! | AACCTAATAAGATAAATATG+AGG | + | chr4_4:59022672-59022691 | None:intergenic | 20.0% |
| !! | TCATATAGAAATATGTAACA+GGG | + | chr4_4:59022950-59022969 | None:intergenic | 20.0% |
| !! | ATCATATAGAAATATGTAAC+AGG | + | chr4_4:59022951-59022970 | None:intergenic | 20.0% |
| !!! | TGTTACATATTTCTATATGA+TGG | - | chr4_4:59022950-59022969 | Msa0691080:intron | 20.0% |
| !! | AAGGATATAAGGATTTAAAT+TGG | - | chr4_4:59023387-59023406 | Msa0691080:intron | 20.0% |
| !!! | TTATGAGATTTTTTCTTTCA+AGG | - | chr4_4:59023479-59023498 | Msa0691080:CDS | 20.0% |
| !! | TACCAGTTAAGATAAAATAA+AGG | - | chr4_4:59023652-59023671 | Msa0691080:intron | 20.0% |
| !! | ACCAGTTAAGATAAAATAAA+GGG | - | chr4_4:59023653-59023672 | Msa0691080:intron | 20.0% |
| !!! | TAAAGGGTTAAATATGTTTT+TGG | - | chr4_4:59023669-59023688 | Msa0691080:intron | 20.0% |
| !!! | TAAAAGGTCTCAATTTTATA+GGG | + | chr4_4:59023696-59023715 | None:intergenic | 20.0% |
| !!! | TTAAAAGGTCTCAATTTTAT+AGG | + | chr4_4:59023697-59023716 | None:intergenic | 20.0% |
| !!! | AGTCCTTACTTAATTTTAAT+AGG | + | chr4_4:59023721-59023740 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr4_4:59024193-59024212 | None:intergenic | 20.0% |
| !! | ATTGAAAAATTAGTTAGAGA+TGG | - | chr4_4:59024221-59024240 | Msa0691080:CDS | 20.0% |
| !!! | ACTTTGAAATTTTAATCACA+TGG | - | chr4_4:59024766-59024785 | Msa0691080:intron | 20.0% |
| !! | AAAAATAATTCCCGATAAAA+AGG | + | chr4_4:59024814-59024833 | None:intergenic | 20.0% |
| !! | TTAAATTGTTTATGCAAACA+GGG | + | chr4_4:59025044-59025063 | None:intergenic | 20.0% |
| !! | ATTAAATTGTTTATGCAAAC+AGG | + | chr4_4:59025045-59025064 | None:intergenic | 20.0% |
| !! | GAATAAATCAAATAATTCCA+AGG | + | chr4_4:59025371-59025390 | None:intergenic | 20.0% |
| !!! | TATTTGATTTATTCCTTTAG+TGG | - | chr4_4:59025377-59025396 | Msa0691080:intron | 20.0% |
| !!! | ATTTGATTTATTCCTTTAGT+GGG | - | chr4_4:59025378-59025397 | Msa0691080:intron | 20.0% |
| !! | TTTATTTATCATGTTTCTTC+CGG | - | chr4_4:59025680-59025699 | Msa0691080:intron | 20.0% |
| !! | AGAAAATGAATTTATTGATG+TGG | + | chr4_4:59025834-59025853 | None:intergenic | 20.0% |
| !!! | GTTCAATTTTTAGCATTAAA+TGG | + | chr4_4:59025895-59025914 | None:intergenic | 20.0% |
| !! | AAGAAATAGATATCTAGTAT+TGG | - | chr4_4:59025943-59025962 | Msa0691080:intron | 20.0% |
| !! | CATGATCTTAAAAATTATTG+GGG | + | chr4_4:59026742-59026761 | None:intergenic | 20.0% |
| !! | ATGCAAAATCTTTTGTGTTT+AGG | - | chr4_4:59020734-59020753 | Msa0691080:CDS | 25.0% |
| !! | ATATTTTCCTAAGCTACAAT+AGG | + | chr4_4:59020859-59020878 | None:intergenic | 25.0% |
| ! | TAGCTAATAAAGTAACAACT+TGG | - | chr4_4:59020929-59020948 | Msa0691080:intron | 25.0% |
| !! | TATGAAAATTAGGTTGTGTT+TGG | + | chr4_4:59021004-59021023 | None:intergenic | 25.0% |
| ! | AAATAGTGAATATGTGATAG+CGG | - | chr4_4:59021058-59021077 | Msa0691080:intron | 25.0% |
| !!! | GTTTTTCAATTAAGATTGCA+TGG | - | chr4_4:59021185-59021204 | Msa0691080:intron | 25.0% |
| !! | TTATCTTTACTAGCTTATAG+CGG | + | chr4_4:59021289-59021308 | None:intergenic | 25.0% |
| ! | GTGATAGAAAACTTACAAAT+AGG | + | chr4_4:59021696-59021715 | None:intergenic | 25.0% |
| !! | AGATCCTACTTATCTTTTAT+CGG | - | chr4_4:59021852-59021871 | Msa0691080:intron | 25.0% |
| !!! | GAATATGCGTTTTGATATAA+AGG | - | chr4_4:59021950-59021969 | Msa0691080:intron | 25.0% |
| !! | TTTTGATATAAAGGAATGCA+AGG | - | chr4_4:59021959-59021978 | Msa0691080:intron | 25.0% |
| !!! | TAGCTTTGTTAGTTTTATGT+TGG | - | chr4_4:59022028-59022047 | Msa0691080:intron | 25.0% |
| !!! | AGCTTTGTTAGTTTTATGTT+GGG | - | chr4_4:59022029-59022048 | Msa0691080:intron | 25.0% |
| ! | TTTAAATAACTTTGCCTAAG+AGG | - | chr4_4:59022176-59022195 | Msa0691080:intron | 25.0% |
| ! | TAAAATTGAAAATGACTGAG+CGG | + | chr4_4:59022292-59022311 | None:intergenic | 25.0% |
| ! | ATTCTATACGAATTTGAACT+TGG | - | chr4_4:59022460-59022479 | Msa0691080:CDS | 25.0% |
| ! | AGCATCATAAAATTATTGGT+TGG | - | chr4_4:59022521-59022540 | Msa0691080:intron | 25.0% |
| !! | TCATTTAGCAATTATTGGTT+AGG | - | chr4_4:59022572-59022591 | Msa0691080:intron | 25.0% |
| !! | TCATTTAGCATTATGTTTTC+AGG | - | chr4_4:59022625-59022644 | Msa0691080:intron | 25.0% |
| !! | TGAATATCTAGAGTTTGTTT+AGG | + | chr4_4:59022705-59022724 | None:intergenic | 25.0% |
| !! | TACTTTTACATATCTTCCTT+AGG | - | chr4_4:59022740-59022759 | Msa0691080:intron | 25.0% |
| !!! | TTCTGTTTAGTATTTGCTAT+TGG | - | chr4_4:59023003-59023022 | Msa0691080:intron | 25.0% |
| !!! | GTATTTGCTATTGGTAATAT+TGG | - | chr4_4:59023012-59023031 | Msa0691080:intron | 25.0% |
| ! | TATTGATGTTCAGTAAGAAT+GGG | + | chr4_4:59023080-59023099 | None:intergenic | 25.0% |
| ! | TTATTGATGTTCAGTAAGAA+TGG | + | chr4_4:59023081-59023100 | None:intergenic | 25.0% |
| !!! | GCTTACTTTTTAGTTTTCTT+TGG | - | chr4_4:59023215-59023234 | Msa0691080:intron | 25.0% |
| ! | CATAAAATTGTTCAAATCAC+TGG | + | chr4_4:59023329-59023348 | None:intergenic | 25.0% |
| ! | ATATAAGGATTTAAATTGGC+AGG | - | chr4_4:59023391-59023410 | Msa0691080:intron | 25.0% |
| ! | TATAAGGATTTAAATTGGCA+GGG | - | chr4_4:59023392-59023411 | Msa0691080:intron | 25.0% |
| !!! | ACCCTTTATTTTATCTTAAC+TGG | + | chr4_4:59023657-59023676 | None:intergenic | 25.0% |
| ! | AAGTAAGGACTAAACTTAAA+AGG | + | chr4_4:59023712-59023731 | None:intergenic | 25.0% |
| ! | AAACAAATTTGAATTGAGGA+GGG | + | chr4_4:59023788-59023807 | None:intergenic | 25.0% |
| ! | TAAACAAATTTGAATTGAGG+AGG | + | chr4_4:59023789-59023808 | None:intergenic | 25.0% |
| ! | TCGTTCAAAAATTTAAGAGT+TGG | - | chr4_4:59024045-59024064 | Msa0691080:intron | 25.0% |
| !!! | TTAAACAAGCTTTGTTGTAT+CGG | - | chr4_4:59024072-59024091 | Msa0691080:intron | 25.0% |
| !! | TTAGAAGTTCCCAATTTTAT+AGG | - | chr4_4:59024165-59024184 | Msa0691080:CDS | 25.0% |
| !! | TAGAAGTTCCCAATTTTATA+GGG | - | chr4_4:59024166-59024185 | Msa0691080:CDS | 25.0% |
| !!! | TTTTTGGTCCCTATAAAATT+GGG | + | chr4_4:59023685-59023704 | None:intergenic | 25.0% |
| ! | TTTGTATGTATATTCTTCAC+TGG | + | chr4_4:59024261-59024280 | None:intergenic | 25.0% |
| ! | GTGTAAAAATCTAATCACAA+AGG | - | chr4_4:59024374-59024393 | Msa0691080:intron | 25.0% |
| !!! | TTTTATTTCCGTATCTGTAT+CGG | + | chr4_4:59024606-59024625 | None:intergenic | 25.0% |
| ! | ATACAGATACGGAAATAAAA+TGG | - | chr4_4:59024606-59024625 | Msa0691080:intron | 25.0% |
| ! | GAAGATATAATCTTCCTTAA+GGG | + | chr4_4:59024657-59024676 | None:intergenic | 25.0% |
| ! | AGAAGATATAATCTTCCTTA+AGG | + | chr4_4:59024658-59024677 | None:intergenic | 25.0% |
| ! | TTTGTCTAGTGTAATTCTAT+TGG | + | chr4_4:59024721-59024740 | None:intergenic | 25.0% |
| !! | GAAAAAAGATGCCTTTTTAT+CGG | - | chr4_4:59024800-59024819 | Msa0691080:intron | 25.0% |
| !! | AAAAAAGATGCCTTTTTATC+GGG | - | chr4_4:59024801-59024820 | Msa0691080:intron | 25.0% |
| !!! | TGTTTGGATTAGTTTATTTG+AGG | + | chr4_4:59025285-59025304 | None:intergenic | 25.0% |
| ! | ATAGAAGTAAAGAAATAGCT+AGG | - | chr4_4:59025340-59025359 | Msa0691080:CDS | 25.0% |
| ! | TAGAAGTAAAGAAATAGCTA+GGG | - | chr4_4:59025341-59025360 | Msa0691080:CDS | 25.0% |
| !!! | TCTGTCTTCATATTTTTTGA+AGG | - | chr4_4:59025410-59025429 | Msa0691080:intron | 25.0% |
| !!! | GTTCAGTTTTCATTTTTTGA+AGG | - | chr4_4:59025561-59025580 | Msa0691080:intron | 25.0% |
| ! | TTATTTATCATGTTTCTTCC+GGG | - | chr4_4:59025681-59025700 | Msa0691080:intron | 25.0% |
| ! | TGAAATATGATACACATATC+AGG | + | chr4_4:59025727-59025746 | None:intergenic | 25.0% |
| !!! | TCTTCATTAACCATTGATTT+GGG | - | chr4_4:59025968-59025987 | Msa0691080:intron | 25.0% |
| ! | TGGCAAAATTTGAATATCTT+CGG | - | chr4_4:59026527-59026546 | Msa0691080:CDS | 25.0% |
| ! | ATCTTCGGTTATAATGTAAA+AGG | - | chr4_4:59026542-59026561 | Msa0691080:CDS | 25.0% |
| ! | TCTTCGGTTATAATGTAAAA+GGG | - | chr4_4:59026543-59026562 | Msa0691080:CDS | 25.0% |
| TATGGAATTCATGGTGAATT+AGG | + | chr4_4:59020415-59020434 | None:intergenic | 30.0% | |
| TAGAAGAGATGAAGAGAAAA+TGG | + | chr4_4:59020521-59020540 | None:intergenic | 30.0% | |
| GAACAAGATGAAATGAATTG+GGG | + | chr4_4:59020555-59020574 | None:intergenic | 30.0% | |
| GGAACAAGATGAAATGAATT+GGG | + | chr4_4:59020556-59020575 | None:intergenic | 30.0% | |
| AGGAACAAGATGAAATGAAT+TGG | + | chr4_4:59020557-59020576 | None:intergenic | 30.0% | |
| ATTTCATCTTGTTCCTCTAA+TGG | - | chr4_4:59020561-59020580 | Msa0691080:three_prime_UTR | 30.0% | |
| GTTAAGCTTAGGAGAATTAA+AGG | + | chr4_4:59020667-59020686 | None:intergenic | 30.0% | |
| ATAAACTCCTATTGTAGCTT+AGG | - | chr4_4:59020849-59020868 | Msa0691080:intron | 30.0% | |
| CTAATTGAAATTGCAGTGTT+TGG | - | chr4_4:59021090-59021109 | Msa0691080:intron | 30.0% | |
| ATTTGACTAAAAGCTCTGTT+TGG | + | chr4_4:59021340-59021359 | None:intergenic | 30.0% | |
| AGAAAACTTACAAATAGGGT+GGG | + | chr4_4:59021691-59021710 | None:intergenic | 30.0% | |
| TAGAAAACTTACAAATAGGG+TGG | + | chr4_4:59021692-59021711 | None:intergenic | 30.0% | |
| !! | TTTATAGCTTTGTGACGTAT+TGG | - | chr4_4:59021803-59021822 | Msa0691080:intron | 30.0% |
| AAGTCCGATAAAAGATAAGT+AGG | + | chr4_4:59021859-59021878 | None:intergenic | 30.0% | |
| ! | CAAAACGCATATTCAACTTT+TGG | + | chr4_4:59021944-59021963 | None:intergenic | 30.0% |
| !!! | GCTTTGTTAGTTTTATGTTG+GGG | - | chr4_4:59022030-59022049 | Msa0691080:CDS | 30.0% |
| !!! | CTTTGTTAGTTTTATGTTGG+GGG | - | chr4_4:59022031-59022050 | Msa0691080:CDS | 30.0% |
| ACTAAATAGGATGAAGACAA+GGG | + | chr4_4:59022111-59022130 | None:intergenic | 30.0% | |
| TACTAAATAGGATGAAGACA+AGG | + | chr4_4:59022112-59022131 | None:intergenic | 30.0% | |
| TTTGGACAGATGTACTAAAT+AGG | + | chr4_4:59022124-59022143 | None:intergenic | 30.0% | |
| GTGATATATGTCTCAAAAAG+AGG | + | chr4_4:59022328-59022347 | None:intergenic | 30.0% | |
| !! | ATAAATGGGTATAGCCTTAT+AGG | + | chr4_4:59022491-59022510 | None:intergenic | 30.0% |
| CACTAGAATTCAGTGATTTA+AGG | - | chr4_4:59022874-59022893 | Msa0691080:intron | 30.0% | |
| TGTGGTTTCTTGTAAAACTA+TGG | + | chr4_4:59023052-59023071 | None:intergenic | 30.0% | |
| GAACATCAATAAAACAGAAG+CGG | - | chr4_4:59023089-59023108 | Msa0691080:intron | 30.0% | |
| TACTTGCATGTGTATCAAAA+TGG | - | chr4_4:59023123-59023142 | Msa0691080:intron | 30.0% | |
| ! | CTAGAATTTAGAAGCATGTA+TGG | + | chr4_4:59023252-59023271 | None:intergenic | 30.0% |
| AACAGATAGACAAGGATATA+AGG | - | chr4_4:59023376-59023395 | Msa0691080:intron | 30.0% | |
| TTCCTGCAAATTTAAGAGAA+GGG | + | chr4_4:59023513-59023532 | None:intergenic | 30.0% | |
| ATTCCTGCAAATTTAAGAGA+AGG | + | chr4_4:59023514-59023533 | None:intergenic | 30.0% | |
| ! | ATCGTGTCCTATATTTTCTA+AGG | + | chr4_4:59023591-59023610 | None:intergenic | 30.0% |
| GAGTGCAGGAAAAAAATTTA+GGG | + | chr4_4:59023756-59023775 | None:intergenic | 30.0% | |
| TGAGTGCAGGAAAAAAATTT+AGG | + | chr4_4:59023757-59023776 | None:intergenic | 30.0% | |
| !!! | TTTACGACAATTTTTTGCAG+AGG | + | chr4_4:59023880-59023899 | None:intergenic | 30.0% |
| !! | TAAACAAGCTTTGTTGTATC+GGG | - | chr4_4:59024073-59024092 | Msa0691080:intron | 30.0% |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | + | chr4_4:59023684-59023703 | None:intergenic | 30.0% |
| TTGTGACATTGGAAAAATAG+AGG | - | chr4_4:59024340-59024359 | Msa0691080:intron | 30.0% | |
| ATACCTTTCGGATGTATTAT+TGG | - | chr4_4:59024565-59024584 | Msa0691080:intron | 30.0% | |
| TCTATCCACATTGCATATAT+GGG | - | chr4_4:59024846-59024865 | Msa0691080:intron | 30.0% | |
| ATTTACCCATATATGCAATG+TGG | + | chr4_4:59024854-59024873 | None:intergenic | 30.0% | |
| TTATTGTTTGACAATTAGCC+AGG | - | chr4_4:59024884-59024903 | Msa0691080:intron | 30.0% | |
| !!! | AGCTTTTTCATAAGCTATCT+TGG | - | chr4_4:59025168-59025187 | Msa0691080:intron | 30.0% |
| GATTTCTCTTAGAAGTCAAT+TGG | - | chr4_4:59025435-59025454 | Msa0691080:intron | 30.0% | |
| GATTTCTGTTAGAACTCAAT+TGG | - | chr4_4:59025586-59025605 | Msa0691080:intron | 30.0% | |
| AGAATCTGTTAAAATGTTCC+CGG | + | chr4_4:59025702-59025721 | None:intergenic | 30.0% | |
| ! | GTCTTCATTAACCATTGATT+TGG | - | chr4_4:59025967-59025986 | Msa0691080:intron | 30.0% |
| CAACTCTAGTATATGTTGTA+GGG | + | chr4_4:59026029-59026048 | None:intergenic | 30.0% | |
| ACAACTCTAGTATATGTTGT+AGG | + | chr4_4:59026030-59026049 | None:intergenic | 30.0% | |
| ACAACATATACTAGAGTTGT+TGG | - | chr4_4:59026030-59026049 | Msa0691080:intron | 30.0% | |
| !! | GTTAAAATCTCGTTTTTAGG+AGG | + | chr4_4:59026083-59026102 | None:intergenic | 30.0% |
| !! | GTGGTTAAAATCTCGTTTTT+AGG | + | chr4_4:59026086-59026105 | None:intergenic | 30.0% |
| GTCATTAGATATTCATCCAA+CGG | - | chr4_4:59026121-59026140 | Msa0691080:intron | 30.0% | |
| TAATGTGTCCTAATATAGTG+TGG | - | chr4_4:59026486-59026505 | Msa0691080:CDS | 30.0% | |
| AATGTGTCCTAATATAGTGT+GGG | - | chr4_4:59026487-59026506 | Msa0691080:CDS | 30.0% | |
| ACTAGATTACAATGAGAAGA+GGG | + | chr4_4:59026680-59026699 | None:intergenic | 30.0% | |
| TACTAGATTACAATGAGAAG+AGG | + | chr4_4:59026681-59026700 | None:intergenic | 30.0% | |
| TGATATGAACGAGATAGAGT+TGG | - | chr4_4:59020256-59020275 | Msa0691080:three_prime_UTR | 35.0% | |
| TCAGCTGAAACGAGTTAAAT+CGG | - | chr4_4:59020363-59020382 | Msa0691080:three_prime_UTR | 35.0% | |
| AGAAGTGAGTATGGAATTCA+TGG | + | chr4_4:59020424-59020443 | None:intergenic | 35.0% | |
| ACGTAATGAAGAAGTGAGTA+TGG | + | chr4_4:59020433-59020452 | None:intergenic | 35.0% | |
| ATGTTGTAGTTGAAGTGTGT+GGG | + | chr4_4:59020461-59020480 | None:intergenic | 35.0% | |
| AACTTCATCTGAAGAATTGC+TGG | + | chr4_4:59020589-59020608 | None:intergenic | 35.0% | |
| GAATTAAAGGAAGGAACTTG+AGG | + | chr4_4:59020654-59020673 | None:intergenic | 35.0% | |
| AGCTTAGGAGAATTAAAGGA+AGG | + | chr4_4:59020663-59020682 | None:intergenic | 35.0% | |
| GTGTTTGGATAAACTCAAAC+AGG | + | chr4_4:59020989-59021008 | None:intergenic | 35.0% | |
| GCAGTGTTTGGTAAAATTAG+CGG | - | chr4_4:59021102-59021121 | Msa0691080:intron | 35.0% | |
| AGCTTATAGCTTAAAGCTCA+TGG | + | chr4_4:59021237-59021256 | None:intergenic | 35.0% | |
| ! | ACTTTTGGCAGTTTATTTGC+AGG | + | chr4_4:59021929-59021948 | None:intergenic | 35.0% |
| AGTGAGTTAAACACTGAGAA+AGG | - | chr4_4:59022211-59022230 | Msa0691080:intron | 35.0% | |
| GTGAGTTAAACACTGAGAAA+GGG | - | chr4_4:59022212-59022231 | Msa0691080:intron | 35.0% | |
| !! | ACAATTTAGAGAAGAGTGCT+AGG | - | chr4_4:59022260-59022279 | Msa0691080:intron | 35.0% |
| AGTGTCAAATATCCTGTATG+CGG | - | chr4_4:59022373-59022392 | Msa0691080:CDS | 35.0% | |
| TGAACTTGGCTATTCCTATA+AGG | - | chr4_4:59022474-59022493 | Msa0691080:intron | 35.0% | |
| !! | TCTAGTTCTGTGCTTTGTAT+TGG | - | chr4_4:59023157-59023176 | Msa0691080:intron | 35.0% |
| ! | TTAGAAGCATGTATGGTCAA+CGG | + | chr4_4:59023245-59023264 | None:intergenic | 35.0% |
| !! | TCACTGGCATTTTAGTACTA+TGG | + | chr4_4:59023313-59023332 | None:intergenic | 35.0% |
| TGTCTAGAAACAGATAGACA+AGG | - | chr4_4:59023368-59023387 | Msa0691080:intron | 35.0% | |
| ATTGTGTTAAAGTATGAGCC+AGG | - | chr4_4:59023428-59023447 | Msa0691080:intron | 35.0% | |
| TTGTGTTAAAGTATGAGCCA+GGG | - | chr4_4:59023429-59023448 | Msa0691080:intron | 35.0% | |
| TTCCCTTCTCTTAAATTTGC+AGG | - | chr4_4:59023508-59023527 | Msa0691080:intron | 35.0% | |
| GTATCGGATATATCGATATG+CGG | - | chr4_4:59023563-59023582 | Msa0691080:intron | 35.0% | |
| TGCGGTTCCTTAGAAAATAT+AGG | - | chr4_4:59023581-59023600 | Msa0691080:intron | 35.0% | |
| ! | CACGTTTAGAACACTATGAA+AGG | + | chr4_4:59024014-59024033 | None:intergenic | 35.0% |
| !! | AAACAAGCTTTGTTGTATCG+GGG | - | chr4_4:59024074-59024093 | Msa0691080:intron | 35.0% |
| GACATTGGAAAAATAGAGGT+TGG | - | chr4_4:59024344-59024363 | Msa0691080:intron | 35.0% | |
| AAATCTAATCACAAAGGCTG+TGG | - | chr4_4:59024380-59024399 | Msa0691080:intron | 35.0% | |
| AATCTAATCACAAAGGCTGT+GGG | - | chr4_4:59024381-59024400 | Msa0691080:intron | 35.0% | |
| ! | TGTTTTCAAACAGATGCATC+CGG | - | chr4_4:59024535-59024554 | Msa0691080:intron | 35.0% |
| !! | TAATACATCCGAAAGGTATC+CGG | + | chr4_4:59024564-59024583 | None:intergenic | 35.0% |
| ATGCCAATAATACATCCGAA+AGG | + | chr4_4:59024571-59024590 | None:intergenic | 35.0% | |
| ! | TGCTGCTACGTACAATATTT+TGG | - | chr4_4:59024689-59024708 | Msa0691080:intron | 35.0% |
| CTCTATCCACATTGCATATA+TGG | - | chr4_4:59024845-59024864 | Msa0691080:intron | 35.0% | |
| ATTAGCCAGGAAATAACAGA+AGG | - | chr4_4:59024897-59024916 | Msa0691080:intron | 35.0% | |
| !! | TGATTCCTTCTGTTATTTCC+TGG | + | chr4_4:59024905-59024924 | None:intergenic | 35.0% |
| GAAACTGGAATTCGACATAT+CGG | - | chr4_4:59024954-59024973 | Msa0691080:intron | 35.0% | |
| ! | GATTTATTCCTTTAGTGGGT+TGG | - | chr4_4:59025382-59025401 | Msa0691080:intron | 35.0% |
| GAATTTATTGATGTGGCTAG+AGG | + | chr4_4:59025827-59025846 | None:intergenic | 35.0% | |
| AATAATCAGACCAACAGTAG+AGG | + | chr4_4:59026226-59026245 | None:intergenic | 35.0% | |
| AACAGGTTGCAGAGATATTT+CGG | + | chr4_4:59026292-59026311 | None:intergenic | 35.0% | |
| AGCTTGATGAACATGATTTC+AGG | - | chr4_4:59026363-59026382 | Msa0691080:CDS | 35.0% | |
| TGATGAACATGATTTCAGGA+AGG | - | chr4_4:59026367-59026386 | Msa0691080:CDS | 35.0% | |
| GATGAACATGATTTCAGGAA+GGG | - | chr4_4:59026368-59026387 | Msa0691080:CDS | 35.0% | |
| ATACCTTCCCACACTATATT+AGG | + | chr4_4:59026497-59026516 | None:intergenic | 35.0% | |
| !! | GGGAAGGTATTGAAAAGTAA+TGG | - | chr4_4:59026507-59026526 | Msa0691080:CDS | 35.0% |
| GTGTCTTAATACTGTGAGAA+TGG | - | chr4_4:59026582-59026601 | Msa0691080:CDS | 35.0% | |
| ! | AAAAATAGCTTGTAGCCTGT+AGG | + | chr4_4:59026650-59026669 | None:intergenic | 35.0% |
| TATGAACGAGATAGAGTTGG+AGG | - | chr4_4:59020259-59020278 | Msa0691080:three_prime_UTR | 40.0% | |
| GATGTTGTAGTTGAAGTGTG+TGG | + | chr4_4:59020462-59020481 | None:intergenic | 40.0% | |
| AGAATTGCTGGATCCATTAG+AGG | + | chr4_4:59020577-59020596 | None:intergenic | 40.0% | |
| TGGTCACTGAAGTTAAGCTT+AGG | + | chr4_4:59020678-59020697 | None:intergenic | 40.0% | |
| ATGCGAGAAGAAAGAAAGCT+TGG | + | chr4_4:59020698-59020717 | None:intergenic | 40.0% | |
| TTACTTAGGCTCTGTCTGTT+TGG | - | chr4_4:59021031-59021050 | Msa0691080:intron | 40.0% | |
| ACTTACAAATAGGGTGGGAA+CGG | + | chr4_4:59021686-59021705 | None:intergenic | 40.0% | |
| !!! | TGTTAGTTTTATGTTGGGGG+TGG | - | chr4_4:59022034-59022053 | Msa0691080:CDS | 40.0% |
| AAATAGGATGAAGACAAGGG+TGG | + | chr4_4:59022108-59022127 | None:intergenic | 40.0% | |
| !!! | TTTTTTCTTGGAGGGAGCAT+TGG | - | chr4_4:59022151-59022170 | Msa0691080:intron | 40.0% |
| CTCATCACATAACACCTCTT+AGG | + | chr4_4:59022193-59022212 | None:intergenic | 40.0% | |
| CGACAGATTCATTCAAAGCA+AGG | + | chr4_4:59022912-59022931 | None:intergenic | 40.0% | |
| !! | TGTGCTTTGTATTGGTTGCT+GGG | - | chr4_4:59023165-59023184 | Msa0691080:intron | 40.0% |
| GGATTTAAATTGGCAGGGTT+TGG | - | chr4_4:59023397-59023416 | Msa0691080:intron | 40.0% | |
| TGTGTTAAAGTATGAGCCAG+GGG | - | chr4_4:59023430-59023449 | Msa0691080:intron | 40.0% | |
| ATCCGATACTCGTATCGTAT+CGG | + | chr4_4:59023552-59023571 | None:intergenic | 40.0% | |
| ATATAGGACACGATGCGTTT+AGG | - | chr4_4:59023597-59023616 | Msa0691080:intron | 40.0% | |
| GAAGAAGGTTCTTGTGACAT+TGG | - | chr4_4:59024329-59024348 | Msa0691080:intron | 40.0% | |
| AACGAAGCAGATAGCCATTT+AGG | - | chr4_4:59024443-59024462 | Msa0691080:intron | 40.0% | |
| GTATCTGTATCGGATACGTT+GGG | + | chr4_4:59024596-59024615 | None:intergenic | 40.0% | |
| CAACGTATCCGATACAGATA+CGG | - | chr4_4:59024595-59024614 | Msa0691080:intron | 40.0% | |
| CATCAGAGATTTAGCCCTTA+AGG | - | chr4_4:59024640-59024659 | Msa0691080:intron | 40.0% | |
| !! | AATTCGACATATCGGTTCAG+TGG | - | chr4_4:59024962-59024981 | Msa0691080:intron | 40.0% |
| TAAATGCTTCAGAGCGTGTT+TGG | + | chr4_4:59025301-59025320 | None:intergenic | 40.0% | |
| GAAATAGCTAGGGAAAACCT+TGG | - | chr4_4:59025351-59025370 | Msa0691080:CDS | 40.0% | |
| !! | GCTAGAGGTTGATGTTTGAA+TGG | + | chr4_4:59025812-59025831 | None:intergenic | 40.0% |
| TGACTCACATTCTAAGCATG+TGG | + | chr4_4:59026105-59026124 | None:intergenic | 40.0% | |
| AGTAACGAGATCAATACCGT+TGG | + | chr4_4:59026140-59026159 | None:intergenic | 40.0% | |
| TATTGATCTCGTTACTGCAG+TGG | - | chr4_4:59026144-59026163 | Msa0691080:intron | 40.0% | |
| CAATCTGTGTATCTGGGAAT+TGG | + | chr4_4:59026180-59026199 | None:intergenic | 40.0% | |
| GACAGTCAATCTGTGTATCT+GGG | + | chr4_4:59026186-59026205 | None:intergenic | 40.0% | |
| AGAGGATAGACAAGATTGCT+CGG | + | chr4_4:59026208-59026227 | None:intergenic | 40.0% | |
| TCTTGTCTATCCTCTACTGT+TGG | - | chr4_4:59026213-59026232 | Msa0691080:intron | 40.0% | |
| ATTCGCTCTCTCTTCAATCA+TGG | + | chr4_4:59026265-59026284 | None:intergenic | 40.0% | |
| ACAGGTTGCAGAGATATTTC+GGG | + | chr4_4:59026291-59026310 | None:intergenic | 40.0% | |
| !! | AGAAAGACTTCTAGAGCAGT+TGG | - | chr4_4:59026327-59026346 | Msa0691080:CDS | 40.0% |
| TCATCAAGCTCTTTGTTGCT+CGG | + | chr4_4:59026353-59026372 | None:intergenic | 40.0% | |
| TGTCCTAATATAGTGTGGGA+AGG | - | chr4_4:59026491-59026510 | Msa0691080:CDS | 40.0% | |
| ! | GCTACATAAAAGAAGTGCAG+TGG | - | chr4_4:59026604-59026623 | Msa0691080:exon | 40.0% |
| TGAGTATAACAGTGACCTAC+AGG | - | chr4_4:59026632-59026651 | Msa0691080:five_prime_UTR | 40.0% | |
| TCTCGCATTCATTGCTTGCA+CGG | - | chr4_4:59020710-59020729 | Msa0691080:CDS | 45.0% | |
| TATCTTACCAAACAGACCCC+TGG | - | chr4_4:59021395-59021414 | Msa0691080:intron | 45.0% | |
| TGATAACCACCTACACACCA+GGG | + | chr4_4:59021415-59021434 | None:intergenic | 45.0% | |
| ATGATAACCACCTACACACC+AGG | + | chr4_4:59021416-59021435 | None:intergenic | 45.0% | |
| ATTGTCTCTGCAGACTTCAG+TGG | - | chr4_4:59021636-59021655 | Msa0691080:intron | 45.0% | |
| !! | TTAGAGAAGAGTGCTAGGCT+CGG | - | chr4_4:59022265-59022284 | Msa0691080:intron | 45.0% |
| GTCAAATATCCTGTATGCGG+TGG | - | chr4_4:59022376-59022395 | Msa0691080:CDS | 45.0% | |
| GATCAATTTCCACCGCATAC+AGG | + | chr4_4:59022388-59022407 | None:intergenic | 45.0% | |
| GCAGCATTTCTCATTGCCTA+AGG | + | chr4_4:59022759-59022778 | None:intergenic | 45.0% | |
| AAGTTCCTCACGAGCTGTAT+CGG | + | chr4_4:59022802-59022821 | None:intergenic | 45.0% | |
| !! | CAGTAAGAATGGGTTGAGTG+TGG | + | chr4_4:59023070-59023089 | None:intergenic | 45.0% |
| !! | CTGTGCTTTGTATTGGTTGC+TGG | - | chr4_4:59023164-59023183 | Msa0691080:intron | 45.0% |
| CCAGGGGATACAATGATACA+GGG | - | chr4_4:59023446-59023465 | Msa0691080:intron | 45.0% | |
| ! | GTATCGTATCGGTGCATCAT+AGG | + | chr4_4:59023541-59023560 | None:intergenic | 45.0% |
| CACCGATACGATACGAGTAT+CGG | - | chr4_4:59023547-59023566 | Msa0691080:intron | 45.0% | |
| GGTTCAAAACGCATGAGACT+TGG | - | chr4_4:59024402-59024421 | Msa0691080:intron | 45.0% | |
| TTGAGGAGACGCAACCTAAA+TGG | + | chr4_4:59024460-59024479 | None:intergenic | 45.0% | |
| CTCTGATACGCCAAAACTTG+AGG | + | chr4_4:59024477-59024496 | None:intergenic | 45.0% | |
| AAACAGATGCATCCGGAATC+CGG | - | chr4_4:59024542-59024561 | Msa0691080:intron | 45.0% | |
| CGTATCTGTATCGGATACGT+TGG | + | chr4_4:59024597-59024616 | None:intergenic | 45.0% | |
| TGTACGTAGCAGCAAGAAAC+AGG | + | chr4_4:59024683-59024702 | None:intergenic | 45.0% | |
| AGAACGTTCCAACCCACTAA+AGG | + | chr4_4:59025393-59025412 | None:intergenic | 45.0% | |
| CTGCAGTGAACCCAAATCAA+TGG | + | chr4_4:59025981-59026000 | None:intergenic | 45.0% | |
| GGACAGTCAATCTGTGTATC+TGG | + | chr4_4:59026187-59026206 | None:intergenic | 45.0% | |
| TCTCTGCAACCTGTTGTTGT+AGG | - | chr4_4:59026297-59026316 | Msa0691080:intron | 45.0% | |
| !! | TTCAAAAAATAAAATTAAAT+AGG | + | chr4_4:59021997-59022016 | None:intergenic | 5.0% |
| !!! | TTTTCAATATATTTATTTTA+GGG | + | chr4_4:59024209-59024228 | None:intergenic | 5.0% |
| !!! | TTTTTCAATATATTTATTTT+AGG | + | chr4_4:59024210-59024229 | None:intergenic | 5.0% |
| GATAACCACCTACACACCAG+GGG | + | chr4_4:59021414-59021433 | None:intergenic | 50.0% | |
| CAGACTTCAGTGGCATTCAC+TGG | - | chr4_4:59021646-59021665 | Msa0691080:intron | 50.0% | |
| TGGGAACGGCAGCAAAAACA+AGG | + | chr4_4:59021672-59021691 | None:intergenic | 50.0% | |
| ! | TGAAGACAAGGGTGGTTTGG+TGG | + | chr4_4:59022100-59022119 | None:intergenic | 50.0% |
| GGATGAAGACAAGGGTGGTT+TGG | + | chr4_4:59022103-59022122 | None:intergenic | 50.0% | |
| TGAAAGCCTCATAGCAGCCA+TGG | + | chr4_4:59022832-59022851 | None:intergenic | 50.0% | |
| ATGGCTGCTATGAGGCTTTC+AGG | - | chr4_4:59022831-59022850 | Msa0691080:intron | 50.0% | |
| TGGCTGCTATGAGGCTTTCA+GGG | - | chr4_4:59022832-59022851 | Msa0691080:intron | 50.0% | |
| TGCTATGAGGCTTTCAGGGA+TGG | - | chr4_4:59022836-59022855 | Msa0691080:intron | 50.0% | |
| !! | GCTTTGTATTGGTTGCTGGG+AGG | - | chr4_4:59023168-59023187 | Msa0691080:intron | 50.0% |
| GCCAGGGGATACAATGATAC+AGG | - | chr4_4:59023445-59023464 | Msa0691080:intron | 50.0% | |
| CCCTGTATCATTGTATCCCC+TGG | + | chr4_4:59023449-59023468 | None:intergenic | 50.0% | |
| GAGGGACTAATACTGAGTGC+AGG | + | chr4_4:59023770-59023789 | None:intergenic | 50.0% | |
| ! | GGTTGCGTCTCCTCAAGTTT+TGG | - | chr4_4:59024464-59024483 | Msa0691080:intron | 50.0% |
| TCCGGAATCCGGATACCTTT+CGG | - | chr4_4:59024553-59024572 | Msa0691080:intron | 50.0% | |
| !! | TCCGAAAGGTATCCGGATTC+CGG | + | chr4_4:59024557-59024576 | None:intergenic | 50.0% |
| GCTTTGCAAGCAGCAGAAAC+TGG | - | chr4_4:59024939-59024958 | Msa0691080:intron | 50.0% | |
| CTTGCAGCTCCTACAACAAC+AGG | + | chr4_4:59026309-59026328 | None:intergenic | 50.0% | |
| CTACACACCAGGGGTCTGTT+TGG | + | chr4_4:59021405-59021424 | None:intergenic | 55.0% | |
| CAAACAGACCCCTGGTGTGT+AGG | - | chr4_4:59021403-59021422 | Msa0691080:intron | 55.0% | |
| !! | ACAAGGGTGGTTTGGTGGTG+GGG | + | chr4_4:59022095-59022114 | None:intergenic | 55.0% |
| !! | GACAAGGGTGGTTTGGTGGT+GGG | + | chr4_4:59022096-59022115 | None:intergenic | 55.0% |
| !! | AGACAAGGGTGGTTTGGTGG+TGG | + | chr4_4:59022097-59022116 | None:intergenic | 55.0% |
| TGAGGAACTTCCGAGCACCA+TGG | - | chr4_4:59022812-59022831 | Msa0691080:intron | 55.0% | |
| CTCATAGCAGCCATGGTGCT+CGG | + | chr4_4:59022825-59022844 | None:intergenic | 55.0% | |
| ACAGACCCCTGGTGTGTAGG+TGG | - | chr4_4:59021406-59021425 | Msa0691080:intron | 60.0% | |
| GGGGTGGGGGAGTTAAAGAG+TGG | + | chr4_4:59022076-59022095 | None:intergenic | 60.0% | |
| GCTAGCCGATACAGCTCGTG+AGG | - | chr4_4:59022794-59022813 | Msa0691080:intron | 60.0% | |
| CGAGCACCATGGCTGCTATG+AGG | - | chr4_4:59022823-59022842 | Msa0691080:intron | 60.0% | |
| !! | GTGGTTTGGTGGTGGGGTGG+GGG | + | chr4_4:59022089-59022108 | None:intergenic | 65.0% |
| !! | GGTGGTTTGGTGGTGGGGTG+GGG | + | chr4_4:59022090-59022109 | None:intergenic | 65.0% |
| !! | GGGTGGTTTGGTGGTGGGGT+GGG | + | chr4_4:59022091-59022110 | None:intergenic | 65.0% |
| !! | AGGGTGGTTTGGTGGTGGGG+TGG | + | chr4_4:59022092-59022111 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 59020252 | 59026780 | 59020252 | ID=Msa0691080;Name=Msa0691080 |
| chr4_4 | mRNA | 59020252 | 59026780 | 59020252 | ID=Msa0691080-mRNA-1;Parent=Msa0691080;Name=Msa0691080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=171|0.5|0.57|0.71|1|1|7|349|316 |
| chr4_4 | exon | 59020252 | 59020770 | 59020252 | ID=Msa0691080-mRNA-1:exon:15983;Parent=Msa0691080-mRNA-1 |
| chr4_4 | exon | 59022030 | 59022126 | 59022030 | ID=Msa0691080-mRNA-1:exon:15982;Parent=Msa0691080-mRNA-1 |
| chr4_4 | exon | 59022350 | 59022484 | 59022350 | ID=Msa0691080-mRNA-1:exon:15981;Parent=Msa0691080-mRNA-1 |
| chr4_4 | exon | 59023448 | 59023502 | 59023448 | ID=Msa0691080-mRNA-1:exon:15980;Parent=Msa0691080-mRNA-1 |
| chr4_4 | exon | 59024137 | 59024270 | 59024137 | ID=Msa0691080-mRNA-1:exon:15979;Parent=Msa0691080-mRNA-1 |
| chr4_4 | exon | 59025333 | 59025383 | 59025333 | ID=Msa0691080-mRNA-1:exon:15978;Parent=Msa0691080-mRNA-1 |
| chr4_4 | exon | 59026301 | 59026780 | 59026301 | ID=Msa0691080-mRNA-1:exon:15977;Parent=Msa0691080-mRNA-1 |
| chr4_4 | five_prime_UTR | 59026610 | 59026780 | 59026610 | ID=Msa0691080-mRNA-1:five_prime_utr;Parent=Msa0691080-mRNA-1 |
| chr4_4 | CDS | 59026301 | 59026609 | 59026301 | ID=Msa0691080-mRNA-1:cds;Parent=Msa0691080-mRNA-1 |
| chr4_4 | CDS | 59025333 | 59025383 | 59025333 | ID=Msa0691080-mRNA-1:cds;Parent=Msa0691080-mRNA-1 |
| chr4_4 | CDS | 59024137 | 59024270 | 59024137 | ID=Msa0691080-mRNA-1:cds;Parent=Msa0691080-mRNA-1 |
| chr4_4 | CDS | 59023448 | 59023502 | 59023448 | ID=Msa0691080-mRNA-1:cds;Parent=Msa0691080-mRNA-1 |
| chr4_4 | CDS | 59022350 | 59022484 | 59022350 | ID=Msa0691080-mRNA-1:cds;Parent=Msa0691080-mRNA-1 |
| chr4_4 | CDS | 59022030 | 59022126 | 59022030 | ID=Msa0691080-mRNA-1:cds;Parent=Msa0691080-mRNA-1 |
| chr4_4 | CDS | 59020601 | 59020770 | 59020601 | ID=Msa0691080-mRNA-1:cds;Parent=Msa0691080-mRNA-1 |
| chr4_4 | three_prime_UTR | 59020252 | 59020600 | 59020252 | ID=Msa0691080-mRNA-1:three_prime_utr;Parent=Msa0691080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
