AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651240 MtrunA17_Chr4g0043641 96.091 614 7 1 1 614 1 597 0.0 1206
Msa0651240 MtrunA17_Chr2g0312121 69.579 618 159 8 1 609 1 598 0.0 815
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651240 AT5G45030.1 68.971 622 155 12 1 608 1 598 0.0 804
Msa0651240 AT5G45030.2 68.971 622 155 12 1 608 1 598 0.0 804
Msa0651240 AT2G35155.2 68.669 616 142 9 1 604 1 577 0.0 771
Msa0651240 AT2G35155.1 68.669 616 142 9 1 604 1 577 0.0 771
Msa0651240 AT3G12950.1 60.997 582 158 16 48 604 9 546 0.0 657

Find 176 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGCCCTGTTGGCATTATC+TGG 0.105074 4_3:+58605376 Msa0651240:CDS
GCCCTTGAGGTGGGGAATTT+TGG 0.138372 4_3:+58602955 Msa0651240:CDS
TGCTTGAACTTATGACTATT+AGG 0.184449 4_3:+58602776 Msa0651240:CDS
GGTTCTTCTGGCTATGTTGC+AGG 0.232873 4_3:+58602976 Msa0651240:CDS
TCTCCAATCAACAGTCTTAT+TGG 0.236068 4_3:+58605156 Msa0651240:CDS
GAAGACAGGGCTAACTATTT+TGG 0.246035 4_3:+58602685 Msa0651240:CDS
GGCAATCGACCCAAAGTTTC+AGG 0.261465 4_3:-58602730 None:intergenic
ATTAAAGTTGGAAGAAGTTC+TGG 0.278329 4_3:+58605189 Msa0651240:CDS
CGTTTATTACTGATGATCTT+TGG 0.282970 4_3:+58603724 Msa0651240:CDS
GCTTGAACTTATGACTATTA+GGG 0.290194 4_3:+58602777 Msa0651240:CDS
GGATTGAGAGCTCACCATTC+TGG 0.297569 4_3:+58602496 Msa0651240:CDS
GGGAGTTCTACCTGAAACTT+TGG 0.310248 4_3:+58602720 Msa0651240:CDS
CTTCAAGGTCAAACGTTTGC+TGG 0.313305 4_3:-58605305 None:intergenic
GCAAAGGATGAAACATCTTT+TGG 0.315003 4_3:-58603650 None:intergenic
TCTGACCAGTCAAGAGAATA+AGG 0.317561 4_3:-58605341 None:intergenic
TCCGTATATAATTGTTCTTT+AGG 0.319492 4_3:-58603365 None:intergenic
TCGACATGTAGCTGTTGATT+TGG 0.329058 4_3:+58603617 Msa0651240:CDS
TGTTCCATATTCAAACAAAA+AGG 0.337063 4_3:-58606023 None:intergenic
GAACACCTACTGTAAGTTAA+AGG 0.345534 4_3:+58606655 Msa0651240:three_prime_UTR
CGATAGTCAAACCGTCATTA+AGG 0.347794 4_3:+58606069 Msa0651240:CDS
CATCCTTTGCCACCCAGTCT+TGG 0.348079 4_3:+58603663 Msa0651240:CDS
GACCATAGTAGTTTCTTTCC+AGG 0.352728 4_3:-58602549 None:intergenic
AAATAAACAAGGTTCACTTC+TGG 0.354735 4_3:+58606467 Msa0651240:three_prime_UTR
TTGGCACTGCGATTGGATTT+CGG 0.357135 4_3:+58602833 Msa0651240:CDS
CGGAGCTTGCTGATGGCTTA+AGG 0.360883 4_3:+58603384 Msa0651240:CDS
CTGTTGAGCTTCAATCTATT+CGG 0.368305 4_3:+58606694 Msa0651240:three_prime_UTR
CAACTTCTCGATTTCCTGTT+CGG 0.374200 4_3:-58603581 None:intergenic
CCGCCCTGTTGGCATTATCT+GGG 0.377241 4_3:+58605377 Msa0651240:CDS
TCTCTTGACTGGTCAGAATA+GGG 0.378681 4_3:+58605347 Msa0651240:CDS
ACACCACTTGTCCAATTCTC+AGG 0.389026 4_3:-58605447 None:intergenic
TTGAGGAAGCTTTGATGAAC+CGG 0.389652 4_3:-58606179 None:intergenic
AATGGTTCTACTGCTGGAAT+TGG 0.393362 4_3:+58605936 Msa0651240:CDS
ATGCGTTGGCTCTGGTTCTC+AGG 0.395107 4_3:+58603418 Msa0651240:CDS
CGAATAGATTGAAGCTCAAC+AGG 0.395263 4_3:-58606693 None:intergenic
ATCGTAGATGGTTCTTCAAC+TGG 0.397446 4_3:-58606050 None:intergenic
GAAACATTTGTTCGAGCTGA+TGG 0.400003 4_3:+58605033 Msa0651240:intron
CTATGTTGCAGGTTTCTACA+TGG 0.403417 4_3:+58602987 Msa0651240:CDS
TCCTAAAGAACAATTATATA+CGG 0.407068 4_3:+58603364 Msa0651240:CDS
ATGAACTGGTGTTCAACATT+TGG 0.409902 4_3:-58606131 None:intergenic
TTCTCTTGACTGGTCAGAAT+AGG 0.410261 4_3:+58605346 Msa0651240:CDS
ATAAGAGGTGTGGGTGATAT+TGG 0.412482 4_3:+58605108 Msa0651240:CDS
GGCTTCCACTATCGCCTTCA+AGG 0.412585 4_3:-58605320 None:intergenic
GAAACAAAATTATCTTCATC+AGG 0.419421 4_3:-58606245 None:intergenic
GACGGTTTGACTATCGTAGA+TGG 0.421940 4_3:-58606062 None:intergenic
GGAGCTTGCTGATGGCTTAA+GGG 0.422751 4_3:+58603385 Msa0651240:CDS
CAGCAAACGTTTGACCTTGA+AGG 0.425621 4_3:+58605306 Msa0651240:CDS
GCTTTAATTCTTCAATGATA+AGG 0.425897 4_3:-58606318 None:intergenic
GGAATGACGCAGCAGAAGAC+AGG 0.426271 4_3:+58602671 Msa0651240:CDS
TTTAGTCTTGGCACTGCGAT+TGG 0.428958 4_3:+58602826 Msa0651240:CDS
CTTGGACCTGGTGTATATCT+TGG 0.435210 4_3:+58603681 Msa0651240:CDS
CCGCCCCAGATAATGCCAAC+AGG 0.435797 4_3:-58605381 None:intergenic
CGCATAAAGTTCACAGGCAA+TGG 0.438775 4_3:+58602905 Msa0651240:CDS
TTGTTACGAGATCAAGTTCA+AGG 0.439583 4_3:-58605494 None:intergenic
AGCGATTCATGCGTTGGCTC+TGG 0.442737 4_3:+58603410 Msa0651240:CDS
TTTGACTACAGGGACTATAA+TGG 0.443768 4_3:+58605212 Msa0651240:CDS
AGAAGTTCTGGTTTGACTAC+AGG 0.444792 4_3:+58605201 Msa0651240:CDS
TTTGACCTTGAAGGCGATAG+TGG 0.446618 4_3:+58605315 Msa0651240:CDS
ATTACTGATGATCTTTGGTA+TGG 0.447995 4_3:+58603729 Msa0651240:CDS
CCAGATAATGCCAACAGGGC+GGG 0.448428 4_3:-58605376 None:intergenic
TCAATCGGAGGAGTCGGCTC+TGG 0.448629 4_3:+58602525 Msa0651240:CDS
CAAAAGTTTGCATGTGTAAA+GGG 0.448865 4_3:-58602585 None:intergenic
GAGCTTCAATCTATTCGGTA+TGG 0.454176 4_3:+58606699 Msa0651240:three_prime_UTR
CATTGAAGAATTAAAGCAGC+AGG 0.456435 4_3:+58606324 Msa0651240:exon
CTACCTGCTGCCCTTGAGGT+GGG 0.457934 4_3:+58602946 Msa0651240:CDS
TATTATAAGCACTCTTGAAA+GGG 0.460882 4_3:+58606632 Msa0651240:three_prime_UTR
TTTAAAGCTCCACATACTAA+AGG 0.462335 4_3:-58606438 None:intergenic
TTGCCACCCAGTCTTGGACC+TGG 0.464075 4_3:+58603669 Msa0651240:CDS
GGAAGCCTTATTCTCTTGAC+TGG 0.464578 4_3:+58605336 Msa0651240:CDS
GGCAGGCAAGTGATTAAAGT+TGG 0.465112 4_3:+58605177 Msa0651240:CDS
CAAATGAATGGTTCTACTGC+TGG 0.465982 4_3:+58605930 Msa0651240:CDS
GCAAAAGTTTGCATGTGTAA+AGG 0.467669 4_3:-58602586 None:intergenic
TCAAAAGTCTATCTGAACTT+AGG 0.471695 4_3:+58606216 Msa0651240:CDS
AACAGGGGCCAGGAGGTGTT+TGG 0.472625 4_3:+58603291 Msa0651240:intron
TGAATTCCAAGTCTTCTTTG+AGG 0.474327 4_3:-58606196 None:intergenic
TCGATTGCCGTCAGGACAGC+AGG 0.474763 4_3:+58602744 Msa0651240:CDS
GCTATTGTTAGAAGCCGAAC+AGG 0.476533 4_3:+58603567 Msa0651240:CDS
CTTGGCCTACATTGAATCGC+TGG 0.479956 4_3:+58602650 Msa0651240:CDS
CAAGAGACATATGGAACCTT+GGG 0.482500 4_3:+58603543 Msa0651240:CDS
TTCCCCACCTCAAGGGCAGC+AGG 0.483181 4_3:-58602949 None:intergenic
CAAAACTTGTTGGTATGAAC+TGG 0.484004 4_3:-58606145 None:intergenic
AAGCTTCCTCAAAGAAGACT+TGG 0.488186 4_3:+58606190 Msa0651240:CDS
CGAACAGGAAATCGAGAAGT+TGG 0.491001 4_3:+58603582 Msa0651240:CDS
GGAGGAGTCGGCTCTGGACC+TGG 0.491608 4_3:+58602531 Msa0651240:CDS
GCTGGAATTGGTTCTACAGT+TGG 0.492581 4_3:+58605948 Msa0651240:CDS
CCTACCTGCTGCCCTTGAGG+TGG 0.495104 4_3:+58602945 Msa0651240:CDS
CTTTCTCATCATTATACTCA+AGG 0.497193 4_3:-58605242 None:intergenic
ATATACACCAGGTCCAAGAC+TGG 0.499323 4_3:-58603676 None:intergenic
GTATTATAAGCACTCTTGAA+AGG 0.499812 4_3:+58606631 Msa0651240:three_prime_UTR
CAGATAATGCCAACAGGGCG+GGG 0.500310 4_3:-58605375 None:intergenic
CCATTCTGGATCAACTCAAT+CGG 0.500907 4_3:+58602510 Msa0651240:CDS
TGTTAAAGTCTTCTGCGAAT+GGG 0.502215 4_3:-58605065 None:intergenic
AGGAGAGCTAACAGATGAAT+CGG 0.502366 4_3:+58602464 None:intergenic
ACTTTGGGTCGATTGCCGTC+AGG 0.503578 4_3:+58602736 Msa0651240:CDS
GGAGTTCTACCTGAAACTTT+GGG 0.504265 4_3:+58602721 Msa0651240:CDS
TACCTGCTGCCCTTGAGGTG+GGG 0.504336 4_3:+58602947 Msa0651240:CDS
CAGATGAATCGGAATCGATT+GGG 0.507056 4_3:+58602475 None:intergenic
AAACATTTGTTCGAGCTGAT+GGG 0.507807 4_3:+58605034 Msa0651240:CDS
ATGTTAAAGTCTTCTGCGAA+TGG 0.508003 4_3:-58605066 None:intergenic
ACGTCGCACCAAACACCTCC+TGG 0.508347 4_3:-58603299 None:intergenic
AGCTTCAATCTATTCGGTAT+GGG 0.512168 4_3:+58606700 Msa0651240:three_prime_UTR
ATGCCTACCTGCTGCCCTTG+AGG 0.515768 4_3:+58602942 Msa0651240:CDS
CAATCAACAGTCTTATTGGC+AGG 0.517169 4_3:+58605160 Msa0651240:CDS
GACCTGGAAAGAAACTACTA+TGG 0.518176 4_3:+58602547 Msa0651240:CDS
ACAGATGAATCGGAATCGAT+TGG 0.518990 4_3:+58602474 None:intergenic
ATTTCTTGTAAACAGGGGCC+AGG 0.519655 4_3:+58603281 Msa0651240:intron
CAATGTAGGCCAAGAAAAGT+AGG 0.521406 4_3:-58602641 None:intergenic
TCAAGAGACATATGGAACCT+TGG 0.523834 4_3:+58603542 Msa0651240:CDS
CAAGTGGTGTTGACCTTGGA+CGG 0.526076 4_3:+58605460 Msa0651240:CDS
GTTGCAAGTCAAGAGACATA+TGG 0.529263 4_3:+58603534 Msa0651240:CDS
GAAGTTCTGGTTTGACTACA+GGG 0.529598 4_3:+58605202 Msa0651240:CDS
AGGGGAAGCGATTCATGCGT+TGG 0.531667 4_3:+58603404 Msa0651240:CDS
AAGCAAAGGCCTTTAGTATG+TGG 0.534975 4_3:+58606429 Msa0651240:three_prime_UTR
TTGTTGCGCATAAAGTTCAC+AGG 0.536854 4_3:+58602899 Msa0651240:CDS
CTGTTGGCATTATCTGGGGC+GGG 0.537553 4_3:+58605382 Msa0651240:CDS
AATGTAATTACATCTATAAG+AGG 0.538978 4_3:+58605093 Msa0651240:CDS
CTTGAGTATAATGATGAGAA+AGG 0.539050 4_3:+58605243 Msa0651240:CDS
GGTCCAAGACTGGGTGGCAA+AGG 0.540512 4_3:-58603666 None:intergenic
AGTTTGCATGTGTAAAGGGC+TGG 0.544378 4_3:-58602581 None:intergenic
ATCAACTCAATCGGAGGAGT+CGG 0.544805 4_3:+58602519 Msa0651240:CDS
ACCAAAATTCCCCACCTCAA+GGG 0.545097 4_3:-58602956 None:intergenic
AGGGAGAAGCCCCGCCCTGT+TGG 0.546538 4_3:+58605366 Msa0651240:CDS
TGGACAAGTGGTGTTGACCT+TGG 0.549702 4_3:+58605456 Msa0651240:CDS
AACCAAAATTCCCCACCTCA+AGG 0.551920 4_3:-58602957 None:intergenic
CTGCCAATAAGACTGTTGAT+TGG 0.554370 4_3:-58605159 None:intergenic
CCGATTGAGTTGATCCAGAA+TGG 0.554613 4_3:-58602510 None:intergenic
TTTCTCATCATTATACTCAA+GGG 0.557070 4_3:-58605241 None:intergenic
CCTGTTGGCATTATCTGGGG+CGG 0.557596 4_3:+58605381 Msa0651240:CDS
AACATTTGTTCGAGCTGATG+GGG 0.557640 4_3:+58605035 Msa0651240:CDS
CACCACTTGTCCAATTCTCA+GGG 0.562663 4_3:-58605446 None:intergenic
TCATTCCAGCGATTCAATGT+AGG 0.567273 4_3:-58602655 None:intergenic
ATTGAAGAATTAAAGCAGCA+GGG 0.568516 4_3:+58606325 Msa0651240:exon
CGCCCTGTTGGCATTATCTG+GGG 0.569716 4_3:+58605378 Msa0651240:CDS
TTATATACGGAGCTTGCTGA+TGG 0.572499 4_3:+58603377 Msa0651240:CDS
ATTACATCTATAAGAGGTGT+GGG 0.575644 4_3:+58605099 Msa0651240:CDS
GAGCTTGCTGATGGCTTAAG+GGG 0.577403 4_3:+58603386 Msa0651240:CDS
TTCAGGTTCTCCTAAATGCA+AGG 0.582236 4_3:-58606267 None:intergenic
TCGGGGCAAGAGCAAATGAA+TGG 0.582918 4_3:+58605918 Msa0651240:CDS
CCCAGATAATGCCAACAGGG+CGG 0.586699 4_3:-58605377 None:intergenic
AATTCACAAGGCCTTAATGA+CGG 0.588146 4_3:-58606080 None:intergenic
TCGTCGCTTTAGAAAAGCAA+AGG 0.589195 4_3:+58606415 Msa0651240:three_prime_UTR
ATGTGTAAAGGGCTGGATGA+AGG 0.592242 4_3:-58602574 None:intergenic
ACATTCCTTTAACTTACAGT+AGG 0.594805 4_3:-58606660 None:intergenic
GCAACAAAGACAAGAATAGC+TGG 0.595801 4_3:-58602883 None:intergenic
GCTTCTAACAATAGCACCCA+AGG 0.596747 4_3:-58603559 None:intergenic
CCACCTCAAGGGCAGCAGGT+AGG 0.597414 4_3:-58602945 None:intergenic
AATTACATCTATAAGAGGTG+TGG 0.598962 4_3:+58605098 Msa0651240:CDS
GCGATTGGATTTCGGATCAG+AGG 0.599232 4_3:+58602841 Msa0651240:CDS
CGCCCCAGATAATGCCAACA+GGG 0.599609 4_3:-58605380 None:intergenic
TGCAGCATATAAACTCATTG+AGG 0.600323 4_3:+58606368 Msa0651240:three_prime_UTR
AATAGTCATAAGTTCAAGCA+AGG 0.603800 4_3:-58602773 None:intergenic
TTGAAGAATTAAAGCAGCAG+GGG 0.608596 4_3:+58606326 Msa0651240:exon
ATTGGATTTCGGATCAGAGG+AGG 0.612176 4_3:+58602844 Msa0651240:CDS
ATTATAAGCACTCTTGAAAG+GGG 0.613073 4_3:+58606633 Msa0651240:three_prime_UTR
TATACACCAGGTCCAAGACT+GGG 0.615295 4_3:-58603675 None:intergenic
GGTCGTTTGAAACTAAGAGT+TGG 0.615590 4_3:+58605417 Msa0651240:CDS
GGAGATCAAGAAGCCGTCCA+AGG 0.617388 4_3:-58605473 None:intergenic
TGTTCTTTAGGAGTTTGTGC+CGG 0.626199 4_3:-58603353 None:intergenic
CAGCAGGTAGGCATTGAACA+TGG 0.626384 4_3:-58602933 None:intergenic
TGGTGTATATCTTGGTGCAG+TGG 0.629669 4_3:+58603689 Msa0651240:CDS
TTCTGGATCAACTCAATCGG+AGG 0.631741 4_3:+58602513 Msa0651240:CDS
GTAGTAGCCTGCTGTCCTGA+CGG 0.633757 4_3:-58602751 None:intergenic
GAGACTGCAAATCTATGCGG+TGG 0.634596 4_3:-58605137 None:intergenic
GAATGACGCAGCAGAAGACA+GGG 0.639240 4_3:+58602672 Msa0651240:CDS
ACAACAAATGAAGCACTCCA+AGG 0.643602 4_3:+58605513 Msa0651240:CDS
ATCATTATACTCAAGGGCAT+AGG 0.644610 4_3:-58605235 None:intergenic
ATAATACAAAGTCTACAAAG+TGG 0.646869 4_3:-58606615 None:intergenic
CCACTTGTCCAATTCTCAGG+GGG 0.658338 4_3:-58605444 None:intergenic
TTGGTGCGACGTAGATGTTG+TGG 0.658994 4_3:+58603310 Msa0651240:CDS
TCTTGTAAACAGGGGCCAGG+AGG 0.664800 4_3:+58603284 Msa0651240:intron
AAACTGATGCTAATGTACAA+GGG 0.688415 4_3:-58606730 None:intergenic
TTTCTGATATGAAATTCACA+AGG 0.697960 4_3:-58606092 None:intergenic
ACCACTTGTCCAATTCTCAG+GGG 0.709383 4_3:-58605445 None:intergenic
ACACCAGGTCCAAGACTGGG+TGG 0.716030 4_3:-58603672 None:intergenic
ACTGCACCAAGATATACACC+AGG 0.724639 4_3:-58603687 None:intergenic
TGGGGCGGGACAGCTAATCG+AGG 0.725183 4_3:+58605396 Msa0651240:CDS
TTGGAGACTGCAAATCTATG+CGG 0.782914 4_3:-58605140 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATATTTTTACAGATAAA+TGG - chr4_3:58603175-58603194 None:intergenic 15.0%
!!! TTCCTTATTTAATAAGAATT+GGG - chr4_3:58604046-58604065 None:intergenic 15.0%
!!! TAGTTATATTTTGATATTGT+TGG - chr4_3:58604799-58604818 None:intergenic 15.0%
!!! ATAGTTTTATTGAAGTTATA+GGG - chr4_3:58604864-58604883 None:intergenic 15.0%
!! GATTTATACAAGTTTATAAA+AGG + chr4_3:58605592-58605611 Msa0651240:intron 15.0%
!! TAAATGATGTTAGAAATTAT+TGG - chr4_3:58605625-58605644 None:intergenic 15.0%
!! TTTATACATTGAAAGAAAAA+AGG - chr4_3:58605796-58605815 None:intergenic 15.0%
!!! TATTTTGGTAATCTTCAAAA+GGG + chr4_3:58602700-58602719 Msa0651240:CDS 20.0%
!!! CATTTCATAGTAAGATTTTA+CGG + chr4_3:58602800-58602819 Msa0651240:CDS 20.0%
!!! AATGGAATTTATATTGGTTA+AGG - chr4_3:58603157-58603176 None:intergenic 20.0%
!! CAGATAAATGGAATTTATAT+TGG - chr4_3:58603163-58603182 None:intergenic 20.0%
!! TGTTTACAAGAAATAAGAAA+TGG - chr4_3:58603275-58603294 None:intergenic 20.0%
!!! ATTTCTTATTTCTTGTAAAC+AGG + chr4_3:58603274-58603293 Msa0651240:intron 20.0%
!!! TTTCTTATTTCTTGTAAACA+GGG + chr4_3:58603275-58603294 Msa0651240:intron 20.0%
!! TCCTAAAGAACAATTATATA+CGG + chr4_3:58603364-58603383 Msa0651240:CDS 20.0%
!! AAAGGTTATATACAAAAAAG+AGG - chr4_3:58603495-58603514 None:intergenic 20.0%
!! AATTTGAAAACAAATTACCT+GGG - chr4_3:58603773-58603792 None:intergenic 20.0%
!! ATAGTAATTTCTTACTGATA+TGG + chr4_3:58603951-58603970 Msa0651240:intron 20.0%
!!! CTTCCTTATTTAATAAGAAT+TGG - chr4_3:58604047-58604066 None:intergenic 20.0%
!! AATCATATCTCTTAGAATTT+GGG + chr4_3:58604245-58604264 Msa0651240:intron 20.0%
!! CTAAAATAGTTGTTATAAGT+GGG - chr4_3:58604509-58604528 None:intergenic 20.0%
!!! CTAAAACTCAAATTCTAAAA+TGG - chr4_3:58604681-58604700 None:intergenic 20.0%
!!! CATTTTAGAATTTGAGTTTT+AGG + chr4_3:58604679-58604698 Msa0651240:intron 20.0%
!!! GATAGTTTTATTGAAGTTAT+AGG - chr4_3:58604865-58604884 None:intergenic 20.0%
!!! TTATGATTTAACTTTCTTGA+AGG + chr4_3:58604970-58604989 Msa0651240:intron 20.0%
!!! TATGATTTAACTTTCTTGAA+GGG + chr4_3:58604971-58604990 Msa0651240:intron 20.0%
!! AATGTAATTACATCTATAAG+AGG + chr4_3:58605093-58605112 Msa0651240:CDS 20.0%
!!! ACATTAACTTTGTTTATAAC+GGG - chr4_3:58605697-58605716 None:intergenic 20.0%
!!! CACATTAACTTTGTTTATAA+CGG - chr4_3:58605698-58605717 None:intergenic 20.0%
!! AATCATTATCAATTGTTAGT+TGG + chr4_3:58605818-58605837 Msa0651240:intron 20.0%
!! GTATTCCTCAAATAAATAAA+CGG - chr4_3:58605859-58605878 None:intergenic 20.0%
!! TTAAAAGCGAAAAATAAACA+AGG + chr4_3:58606456-58606475 Msa0651240:three_prime_UTR 20.0%
!!! TTTTATTTTCATGTTCGATA+AGG + chr4_3:58606507-58606526 Msa0651240:three_prime_UTR 20.0%
!!! CTATTTTGGTAATCTTCAAA+AGG + chr4_3:58602699-58602718 Msa0651240:CDS 25.0%
!! TTGAATTGAAAAGTGTAATG+AGG - chr4_3:58603023-58603042 None:intergenic 25.0%
! CAACAATCTATAAAACCTAT+CGG - chr4_3:58603104-58603123 None:intergenic 25.0%
!!! GATAGGTTTTATAGATTGTT+GGG + chr4_3:58603103-58603122 Msa0651240:intron 25.0%
!!! ATAGGTTTTATAGATTGTTG+GGG + chr4_3:58603104-58603123 Msa0651240:intron 25.0%
!! TTCTTATTTCTTGTAAACAG+GGG + chr4_3:58603276-58603295 Msa0651240:intron 25.0%
! TCCGTATATAATTGTTCTTT+AGG - chr4_3:58603368-58603387 None:intergenic 25.0%
! CAATTTGAAAACAAATTACC+TGG - chr4_3:58603774-58603793 None:intergenic 25.0%
!! CATCATGAATATTTTACATG+TGG + chr4_3:58603799-58603818 Msa0651240:intron 25.0%
! TGATCGATGAAAAAGAATAA+TGG + chr4_3:58603822-58603841 Msa0651240:intron 25.0%
! ATATGGTGTGAATAATATGT+TGG + chr4_3:58603968-58603987 Msa0651240:intron 25.0%
! CTCCCAATTCTTATTAAATA+AGG + chr4_3:58604041-58604060 Msa0651240:intron 25.0%
!!! TTATCTCTTAGGATTAGTTT+CGG + chr4_3:58604113-58604132 Msa0651240:intron 25.0%
! TGTTGTATTAGTATAAGTGA+GGG + chr4_3:58604186-58604205 Msa0651240:intron 25.0%
! CAATCATATCTCTTAGAATT+TGG + chr4_3:58604244-58604263 Msa0651240:intron 25.0%
! AATTAAATAGTCTCAACCAT+TGG - chr4_3:58604375-58604394 None:intergenic 25.0%
! GCTAAAATAGTTGTTATAAG+TGG - chr4_3:58604510-58604529 None:intergenic 25.0%
! ACTTCAATAAAACTATCTCT+TGG + chr4_3:58604868-58604887 Msa0651240:intron 25.0%
!!! ACAAGTTTGACATTTTTCAA+AGG - chr4_3:58604925-58604944 None:intergenic 25.0%
!! TAACAAAATGGTAATGAGAA+TGG - chr4_3:58605006-58605025 None:intergenic 25.0%
! TTTCTCATCATTATACTCAA+GGG - chr4_3:58605244-58605263 None:intergenic 25.0%
! CAAAATGTGGTTTAATTCAA+AGG + chr4_3:58605544-58605563 Msa0651240:intron 25.0%
!! TCTTCAAGCTTTTCTTTTAT+TGG - chr4_3:58605993-58606012 None:intergenic 25.0%
! TGTTCCATATTCAAACAAAA+AGG - chr4_3:58606026-58606045 None:intergenic 25.0%
! TTTCTGATATGAAATTCACA+AGG - chr4_3:58606095-58606114 None:intergenic 25.0%
! GAAACAAAATTATCTTCATC+AGG - chr4_3:58606248-58606267 None:intergenic 25.0%
!!! AATTTTGTTTCCTTGCATTT+AGG + chr4_3:58606257-58606276 Msa0651240:CDS 25.0%
! GCTTTAATTCTTCAATGATA+AGG - chr4_3:58606321-58606340 None:intergenic 25.0%
! ATAATACAAAGTCTACAAAG+TGG - chr4_3:58606618-58606637 None:intergenic 25.0%
! TATTATAAGCACTCTTGAAA+GGG + chr4_3:58606632-58606651 Msa0651240:three_prime_UTR 25.0%
CAAAAGTTTGCATGTGTAAA+GGG - chr4_3:58602588-58602607 None:intergenic 30.0%
AATAGTCATAAGTTCAAGCA+AGG - chr4_3:58602776-58602795 None:intergenic 30.0%
TGCTTGAACTTATGACTATT+AGG + chr4_3:58602776-58602795 Msa0651240:CDS 30.0%
GCTTGAACTTATGACTATTA+GGG + chr4_3:58602777-58602796 Msa0651240:CDS 30.0%
AGAAAAGAAGAAAAACTGTG+TGG - chr4_3:58603063-58603082 None:intergenic 30.0%
AATCTATAAAACCTATCGGT+CGG - chr4_3:58603100-58603119 None:intergenic 30.0%
!! CGATAGGTTTTATAGATTGT+TGG + chr4_3:58603102-58603121 Msa0651240:intron 30.0%
ATATCATCTCAAAGCCATAA+AGG + chr4_3:58603188-58603207 Msa0651240:intron 30.0%
CCAACCTATATACCATAAAA+AGG - chr4_3:58603225-58603244 None:intergenic 30.0%
! CCTTTTTATGGTATATAGGT+TGG + chr4_3:58603222-58603241 Msa0651240:intron 30.0%
! GTTGTGGAGTTTTCTTATTA+TGG + chr4_3:58603326-58603345 Msa0651240:CDS 30.0%
TTCAAGGAGAAGAAGTTAAA+AGG - chr4_3:58603513-58603532 None:intergenic 30.0%
!!! TTTTAACTTCTTCTCCTTGA+AGG + chr4_3:58603512-58603531 Msa0651240:intron 30.0%
CGTTTATTACTGATGATCTT+TGG + chr4_3:58603724-58603743 Msa0651240:CDS 30.0%
ATTACTGATGATCTTTGGTA+TGG + chr4_3:58603729-58603748 Msa0651240:CDS 30.0%
!! GATGAAAAAGAATAATGGAC+TGG + chr4_3:58603827-58603846 Msa0651240:intron 30.0%
AAAACCTTATAGCTTCAACA+TGG - chr4_3:58603897-58603916 None:intergenic 30.0%
!! GTTTTAGTCTGAGTTAAAAG+AGG + chr4_3:58603912-58603931 Msa0651240:intron 30.0%
GTGTTGTATTAGTATAAGTG+AGG + chr4_3:58604185-58604204 Msa0651240:intron 30.0%
ATTAGTATAAGTGAGGGTTA+AGG + chr4_3:58604192-58604211 Msa0651240:intron 30.0%
!!! CTAGCTTTTGGGATTATATA+GGG - chr4_3:58604277-58604296 None:intergenic 30.0%
AAATAGTTGTTATAAGTGGG+AGG - chr4_3:58604506-58604525 None:intergenic 30.0%
!! AATTTTGATCTTGGACATGA+GGG - chr4_3:58604566-58604585 None:intergenic 30.0%
!! AAATTTTGATCTTGGACATG+AGG - chr4_3:58604567-58604586 None:intergenic 30.0%
!! CACACTTCAAATTTTGATCT+TGG - chr4_3:58604575-58604594 None:intergenic 30.0%
TTGTTTGGACAACTATTATC+AGG - chr4_3:58604627-58604646 None:intergenic 30.0%
GTTGTCATGAATATGTTGTT+TGG - chr4_3:58604642-58604661 None:intergenic 30.0%
!! CTCAAATTCTAAAATGGTAC+TGG - chr4_3:58604675-58604694 None:intergenic 30.0%
!!! CTAAATTTTCGGGTTGAATT+AGG - chr4_3:58604705-58604724 None:intergenic 30.0%
AACCCGAAAATTTAGCTAAA+AGG + chr4_3:58604710-58604729 Msa0651240:intron 30.0%
ACCCGAAAATTTAGCTAAAA+GGG + chr4_3:58604711-58604730 Msa0651240:intron 30.0%
!! ACCCTTTTAGCTAAATTTTC+GGG - chr4_3:58604715-58604734 None:intergenic 30.0%
!! CACCCTTTTAGCTAAATTTT+CGG - chr4_3:58604716-58604735 None:intergenic 30.0%
AAAATTTAGCTAAAAGGGTG+CGG + chr4_3:58604716-58604735 Msa0651240:intron 30.0%
AAAATAGTGGTTAGAAGTGA+GGG - chr4_3:58604747-58604766 None:intergenic 30.0%
AAAAATAGTGGTTAGAAGTG+AGG - chr4_3:58604748-58604767 None:intergenic 30.0%
AGCAATATGGCAAAAAATAG+TGG - chr4_3:58604760-58604779 None:intergenic 30.0%
GTTTCTGCAAGATAACAAAA+TGG - chr4_3:58605018-58605037 None:intergenic 30.0%
AATTACATCTATAAGAGGTG+TGG + chr4_3:58605098-58605117 Msa0651240:CDS 30.0%
! ATTACATCTATAAGAGGTGT+GGG + chr4_3:58605099-58605118 Msa0651240:CDS 30.0%
ATTAAAGTTGGAAGAAGTTC+TGG + chr4_3:58605189-58605208 Msa0651240:CDS 30.0%
CTTTCTCATCATTATACTCA+AGG - chr4_3:58605245-58605264 None:intergenic 30.0%
CTTGAGTATAATGATGAGAA+AGG + chr4_3:58605243-58605262 Msa0651240:CDS 30.0%
!! CACATTTTGAAAACAAACCT+TGG - chr4_3:58605533-58605552 None:intergenic 30.0%
!! CAAGGTTTGTTTTCAAAATG+TGG + chr4_3:58605531-58605550 Msa0651240:intron 30.0%
TACAAGTTTATAAAAGGAGC+TGG + chr4_3:58605598-58605617 Msa0651240:intron 30.0%
ACAAGTTTATAAAAGGAGCT+GGG + chr4_3:58605599-58605618 Msa0651240:intron 30.0%
TGTATGCATAATCCATAAGA+AGG - chr4_3:58605755-58605774 None:intergenic 30.0%
AAAAAAGGACATTTGTATGC+AGG - chr4_3:58605781-58605800 None:intergenic 30.0%
TAAATAAACGGTTCAGGAAA+GGG - chr4_3:58605847-58605866 None:intergenic 30.0%
ATAAATAAACGGTTCAGGAA+AGG - chr4_3:58605848-58605867 None:intergenic 30.0%
CTCAAATAAATAAACGGTTC+AGG - chr4_3:58605853-58605872 None:intergenic 30.0%
CTGAACCGTTTATTTATTTG+AGG + chr4_3:58605851-58605870 Msa0651240:intron 30.0%
! TCTAAAATACAGCCAAAGAA+AGG - chr4_3:58605897-58605916 None:intergenic 30.0%
!! CTTTGGCTGTATTTTAGATT+CGG + chr4_3:58605899-58605918 Msa0651240:intron 30.0%
!! TTTGGCTGTATTTTAGATTC+GGG + chr4_3:58605900-58605919 Msa0651240:intron 30.0%
! TTTTCTTTTATTGGCACAGT+GGG - chr4_3:58605984-58606003 None:intergenic 30.0%
!! TGAGCCTTTTTGTTTGAATA+TGG + chr4_3:58606019-58606038 Msa0651240:CDS 30.0%
TCAAAAGTCTATCTGAACTT+AGG + chr4_3:58606216-58606235 Msa0651240:CDS 30.0%
ATTGAAGAATTAAAGCAGCA+GGG + chr4_3:58606325-58606344 Msa0651240:exon 30.0%
! TTTAAAGCTCCACATACTAA+AGG - chr4_3:58606441-58606460 None:intergenic 30.0%
AAATAAACAAGGTTCACTTC+TGG + chr4_3:58606467-58606486 Msa0651240:three_prime_UTR 30.0%
!! AGCTGTGTAGTATTTTAAAG+AGG + chr4_3:58606551-58606570 Msa0651240:three_prime_UTR 30.0%
GTATTATAAGCACTCTTGAA+AGG + chr4_3:58606631-58606650 Msa0651240:three_prime_UTR 30.0%
ATTATAAGCACTCTTGAAAG+GGG + chr4_3:58606633-58606652 Msa0651240:three_prime_UTR 30.0%
! ACATTCCTTTAACTTACAGT+AGG - chr4_3:58606663-58606682 None:intergenic 30.0%
GCAAAAGTTTGCATGTGTAA+AGG - chr4_3:58602589-58602608 None:intergenic 35.0%
! ATTTTACGGCGATTTAGTCT+TGG + chr4_3:58602814-58602833 Msa0651240:CDS 35.0%
AGTAATTTAATCCGACCGAT+AGG + chr4_3:58603086-58603105 Msa0651240:intron 35.0%
CCTATATACCATAAAAAGGC+TGG - chr4_3:58603221-58603240 None:intergenic 35.0%
! CCAGCCTTTTTATGGTATAT+AGG + chr4_3:58603218-58603237 Msa0651240:intron 35.0%
! GTTTTCTTATTATGGTGCAC+CGG + chr4_3:58603334-58603353 Msa0651240:CDS 35.0%
! AGTTGATTCTCATGAGCAAA+AGG - chr4_3:58603445-58603464 None:intergenic 35.0%
!! GGATGAAACATCTTTTGGTT+CGG - chr4_3:58603648-58603667 None:intergenic 35.0%
! GCAAAGGATGAAACATCTTT+TGG - chr4_3:58603653-58603672 None:intergenic 35.0%
GTTACCATGTTGAAGCTATA+AGG + chr4_3:58603890-58603909 Msa0651240:intron 35.0%
GTCTGAGTTAAAAGAGGAAA+AGG + chr4_3:58603918-58603937 Msa0651240:intron 35.0%
AGCGTCTTGAATTATCTCTT+AGG + chr4_3:58604102-58604121 Msa0651240:intron 35.0%
!!! GCTAGCTTTTGGGATTATAT+AGG - chr4_3:58604278-58604297 None:intergenic 35.0%
! TAATCCCAAAAGCTAGCTTA+TGG + chr4_3:58604281-58604300 Msa0651240:intron 35.0%
! AATCCCAAAAGCTAGCTTAT+GGG + chr4_3:58604282-58604301 Msa0651240:intron 35.0%
TCATCCATGTATAGATCCAA+CGG + chr4_3:58604417-58604436 Msa0651240:intron 35.0%
AATCTCACATGACAGTGATA+TGG - chr4_3:58604532-58604551 None:intergenic 35.0%
! ATTTGAAGTGTGAAGTTTGC+AGG + chr4_3:58604583-58604602 Msa0651240:intron 35.0%
! AAATGGTACTGGAATCTTGT+CGG - chr4_3:58604664-58604683 None:intergenic 35.0%
! AAATTTAGCTAAAAGGGTGC+GGG + chr4_3:58604717-58604736 Msa0651240:intron 35.0%
TGCCATATTGCTAATTAACG+TGG + chr4_3:58604768-58604787 Msa0651240:intron 35.0%
GCCATATTGCTAATTAACGT+GGG + chr4_3:58604769-58604788 Msa0651240:intron 35.0%
ACCCACGTTAATTAGCAATA+TGG - chr4_3:58604773-58604792 None:intergenic 35.0%
!! ATTTTTCAAAGGATTGCCTC+AGG - chr4_3:58604914-58604933 None:intergenic 35.0%
AAACATTTGTTCGAGCTGAT+GGG + chr4_3:58605034-58605053 Msa0651240:CDS 35.0%
TGTTAAAGTCTTCTGCGAAT+GGG - chr4_3:58605068-58605087 None:intergenic 35.0%
ATGTTAAAGTCTTCTGCGAA+TGG - chr4_3:58605069-58605088 None:intergenic 35.0%
! TCTCCAATCAACAGTCTTAT+TGG + chr4_3:58605156-58605175 Msa0651240:CDS 35.0%
TTTGACTACAGGGACTATAA+TGG + chr4_3:58605212-58605231 Msa0651240:CDS 35.0%
! ATCATTATACTCAAGGGCAT+AGG - chr4_3:58605238-58605257 None:intergenic 35.0%
TTGTTACGAGATCAAGTTCA+AGG - chr4_3:58605497-58605516 None:intergenic 35.0%
TGCATAATCCATAAGAAGGT+TGG - chr4_3:58605751-58605770 None:intergenic 35.0%
!! TTGGCTGTATTTTAGATTCG+GGG + chr4_3:58605901-58605920 Msa0651240:intron 35.0%
! CTTTTCTTTTATTGGCACAG+TGG - chr4_3:58605985-58606004 None:intergenic 35.0%
AATTCACAAGGCCTTAATGA+CGG - chr4_3:58606083-58606102 None:intergenic 35.0%
ATGAACTGGTGTTCAACATT+TGG - chr4_3:58606134-58606153 None:intergenic 35.0%
!! CAAAACTTGTTGGTATGAAC+TGG - chr4_3:58606148-58606167 None:intergenic 35.0%
! TTCATACCAACAAGTTTTGC+AGG + chr4_3:58606149-58606168 Msa0651240:CDS 35.0%
! GATTTTCCTGCAAAACTTGT+TGG - chr4_3:58606158-58606177 None:intergenic 35.0%
! AAGTTTTGCAGGAAAATCTC+CGG + chr4_3:58606160-58606179 Msa0651240:CDS 35.0%
TGAATTCCAAGTCTTCTTTG+AGG - chr4_3:58606199-58606218 None:intergenic 35.0%
CATTGAAGAATTAAAGCAGC+AGG + chr4_3:58606324-58606343 Msa0651240:exon 35.0%
TTGAAGAATTAAAGCAGCAG+GGG + chr4_3:58606326-58606345 Msa0651240:exon 35.0%
TGCAGCATATAAACTCATTG+AGG + chr4_3:58606368-58606387 Msa0651240:three_prime_UTR 35.0%
GAACACCTACTGTAAGTTAA+AGG + chr4_3:58606655-58606674 Msa0651240:three_prime_UTR 35.0%
CTGTTGAGCTTCAATCTATT+CGG + chr4_3:58606694-58606713 Msa0651240:three_prime_UTR 35.0%
AGCTTCAATCTATTCGGTAT+GGG + chr4_3:58606700-58606719 Msa0651240:three_prime_UTR 35.0%
CCATTCTGGATCAACTCAAT+CGG + chr4_3:58602510-58602529 Msa0651240:CDS 40.0%
GACCTGGAAAGAAACTACTA+TGG + chr4_3:58602547-58602566 Msa0651240:CDS 40.0%
GACCATAGTAGTTTCTTTCC+AGG - chr4_3:58602552-58602571 None:intergenic 40.0%
! CACATGCAAACTTTTGCAGT+TGG + chr4_3:58602592-58602611 Msa0651240:CDS 40.0%
CAATGTAGGCCAAGAAAAGT+AGG - chr4_3:58602644-58602663 None:intergenic 40.0%
TCATTCCAGCGATTCAATGT+AGG - chr4_3:58602658-58602677 None:intergenic 40.0%
! GAAGACAGGGCTAACTATTT+TGG + chr4_3:58602685-58602704 Msa0651240:CDS 40.0%
GGAGTTCTACCTGAAACTTT+GGG + chr4_3:58602721-58602740 Msa0651240:CDS 40.0%
GCAACAAAGACAAGAATAGC+TGG - chr4_3:58602886-58602905 None:intergenic 40.0%
TTGTTGCGCATAAAGTTCAC+AGG + chr4_3:58602899-58602918 Msa0651240:CDS 40.0%
CTATGTTGCAGGTTTCTACA+TGG + chr4_3:58602987-58603006 Msa0651240:CDS 40.0%
!! AGGTTTCTACATGGCTTTAG+TGG + chr4_3:58602996-58603015 Msa0651240:intron 40.0%
ATACCATAAAAAGGCTGGCA+TGG - chr4_3:58603216-58603235 None:intergenic 40.0%
! TGTTCTTTAGGAGTTTGTGC+CGG - chr4_3:58603356-58603375 None:intergenic 40.0%
!! TTATATACGGAGCTTGCTGA+TGG + chr4_3:58603377-58603396 Msa0651240:CDS 40.0%
GTTGCAAGTCAAGAGACATA+TGG + chr4_3:58603534-58603553 Msa0651240:CDS 40.0%
TCAAGAGACATATGGAACCT+TGG + chr4_3:58603542-58603561 Msa0651240:CDS 40.0%
CAAGAGACATATGGAACCTT+GGG + chr4_3:58603543-58603562 Msa0651240:CDS 40.0%
CAACTTCTCGATTTCCTGTT+CGG - chr4_3:58603584-58603603 None:intergenic 40.0%
! TCGACATGTAGCTGTTGATT+TGG + chr4_3:58603617-58603636 Msa0651240:CDS 40.0%
! CTTTGGTATGGCATTTTTGC+TGG + chr4_3:58603741-58603760 Msa0651240:CDS 40.0%
! ATTTTTGCTGGAACAAACCC+AGG + chr4_3:58603753-58603772 Msa0651240:CDS 40.0%
GCTTCAACATGGTAACAAAG+AGG - chr4_3:58603886-58603905 None:intergenic 40.0%
GAGATAATTCAAGACGCTCT+AGG - chr4_3:58604100-58604119 None:intergenic 40.0%
! ATCCCAAAAGCTAGCTTATG+GGG + chr4_3:58604283-58604302 Msa0651240:intron 40.0%
ACAACCGTTGGATCTATACA+TGG - chr4_3:58604424-58604443 None:intergenic 40.0%
! TATAGTTTGCGAGTTTCCTG+AGG + chr4_3:58604895-58604914 Msa0651240:intron 40.0%
GAAACATTTGTTCGAGCTGA+TGG + chr4_3:58605033-58605052 Msa0651240:intron 40.0%
AACATTTGTTCGAGCTGATG+GGG + chr4_3:58605035-58605054 Msa0651240:CDS 40.0%
! ATAAGAGGTGTGGGTGATAT+TGG + chr4_3:58605108-58605127 Msa0651240:CDS 40.0%
TTGGAGACTGCAAATCTATG+CGG - chr4_3:58605143-58605162 None:intergenic 40.0%
CTGCCAATAAGACTGTTGAT+TGG - chr4_3:58605162-58605181 None:intergenic 40.0%
!! CAATCAACAGTCTTATTGGC+AGG + chr4_3:58605160-58605179 Msa0651240:CDS 40.0%
!! AGAAGTTCTGGTTTGACTAC+AGG + chr4_3:58605201-58605220 Msa0651240:CDS 40.0%
!! GAAGTTCTGGTTTGACTACA+GGG + chr4_3:58605202-58605221 Msa0651240:CDS 40.0%
!!! CTCACTGATTTTCTTGTCGT+TGG + chr4_3:58605276-58605295 Msa0651240:CDS 40.0%
TCTGACCAGTCAAGAGAATA+AGG - chr4_3:58605344-58605363 None:intergenic 40.0%
! TTCTCTTGACTGGTCAGAAT+AGG + chr4_3:58605346-58605365 Msa0651240:CDS 40.0%
! TCTCTTGACTGGTCAGAATA+GGG + chr4_3:58605347-58605366 Msa0651240:CDS 40.0%
! GGTCGTTTGAAACTAAGAGT+TGG + chr4_3:58605417-58605436 Msa0651240:CDS 40.0%
! ACAACAAATGAAGCACTCCA+AGG + chr4_3:58605513-58605532 Msa0651240:CDS 40.0%
TCCTGAGACTGAGATGAAAA+CGG - chr4_3:58605722-58605741 None:intergenic 40.0%
GAGTAGAACCAACCTTCTTA+TGG + chr4_3:58605740-58605759 Msa0651240:intron 40.0%
AGAAAGGAAAAGTCAGCTCT+AGG - chr4_3:58605881-58605900 None:intergenic 40.0%
!! GAGCTGACTTTTCCTTTCTT+TGG + chr4_3:58605882-58605901 Msa0651240:intron 40.0%
! CAAATGAATGGTTCTACTGC+TGG + chr4_3:58605930-58605949 Msa0651240:CDS 40.0%
! AATGGTTCTACTGCTGGAAT+TGG + chr4_3:58605936-58605955 Msa0651240:CDS 40.0%
ATCGTAGATGGTTCTTCAAC+TGG - chr4_3:58606053-58606072 None:intergenic 40.0%
CGATAGTCAAACCGTCATTA+AGG + chr4_3:58606069-58606088 Msa0651240:CDS 40.0%
! TTGAGGAAGCTTTGATGAAC+CGG - chr4_3:58606182-58606201 None:intergenic 40.0%
AAGCTTCCTCAAAGAAGACT+TGG + chr4_3:58606190-58606209 Msa0651240:CDS 40.0%
! TTCAGGTTCTCCTAAATGCA+AGG - chr4_3:58606270-58606289 None:intergenic 40.0%
! TGTTTTCTTCTCTTCGCTTC+AGG - chr4_3:58606287-58606306 None:intergenic 40.0%
!! TCGTCGCTTTAGAAAAGCAA+AGG + chr4_3:58606415-58606434 Msa0651240:three_prime_UTR 40.0%
AAGCAAAGGCCTTTAGTATG+TGG + chr4_3:58606429-58606448 Msa0651240:three_prime_UTR 40.0%
CGAATAGATTGAAGCTCAAC+AGG - chr4_3:58606696-58606715 None:intergenic 40.0%
GAGCTTCAATCTATTCGGTA+TGG + chr4_3:58606699-58606718 Msa0651240:three_prime_UTR 40.0%
!! CCGATTGAGTTGATCCAGAA+TGG - chr4_3:58602513-58602532 None:intergenic 45.0%
TTCTGGATCAACTCAATCGG+AGG + chr4_3:58602513-58602532 Msa0651240:CDS 45.0%
ATCAACTCAATCGGAGGAGT+CGG + chr4_3:58602519-58602538 Msa0651240:CDS 45.0%
ATGTGTAAAGGGCTGGATGA+AGG - chr4_3:58602577-58602596 None:intergenic 45.0%
AGTTTGCATGTGTAAAGGGC+TGG - chr4_3:58602584-58602603 None:intergenic 45.0%
!! GCAATGCTGCCTACTTTTCT+TGG + chr4_3:58602632-58602651 Msa0651240:CDS 45.0%
GGGAGTTCTACCTGAAACTT+TGG + chr4_3:58602720-58602739 Msa0651240:CDS 45.0%
!! TTTAGTCTTGGCACTGCGAT+TGG + chr4_3:58602826-58602845 Msa0651240:CDS 45.0%
TTGGCACTGCGATTGGATTT+CGG + chr4_3:58602833-58602852 Msa0651240:CDS 45.0%
ATTGGATTTCGGATCAGAGG+AGG + chr4_3:58602844-58602863 Msa0651240:CDS 45.0%
CGCATAAAGTTCACAGGCAA+TGG + chr4_3:58602905-58602924 Msa0651240:CDS 45.0%
ACCAAAATTCCCCACCTCAA+GGG - chr4_3:58602959-58602978 None:intergenic 45.0%
AACCAAAATTCCCCACCTCA+AGG - chr4_3:58602960-58602979 None:intergenic 45.0%
!!! GTGGGGAATTTTGGTTCTTC+TGG + chr4_3:58602964-58602983 Msa0651240:CDS 45.0%
! GAACCATGCCAGCCTTTTTA+TGG + chr4_3:58603210-58603229 Msa0651240:intron 45.0%
ATTTCTTGTAAACAGGGGCC+AGG + chr4_3:58603281-58603300 Msa0651240:intron 45.0%
!! CTCTTGACTTGCAACCTTCA+AGG - chr4_3:58603529-58603548 None:intergenic 45.0%
GCTTCTAACAATAGCACCCA+AGG - chr4_3:58603562-58603581 None:intergenic 45.0%
GCTATTGTTAGAAGCCGAAC+AGG + chr4_3:58603567-58603586 Msa0651240:CDS 45.0%
CGAACAGGAAATCGAGAAGT+TGG + chr4_3:58603582-58603601 Msa0651240:CDS 45.0%
TATACACCAGGTCCAAGACT+GGG - chr4_3:58603678-58603697 None:intergenic 45.0%
ATATACACCAGGTCCAAGAC+TGG - chr4_3:58603679-58603698 None:intergenic 45.0%
CTTGGACCTGGTGTATATCT+TGG + chr4_3:58603681-58603700 Msa0651240:CDS 45.0%
ACTGCACCAAGATATACACC+AGG - chr4_3:58603690-58603709 None:intergenic 45.0%
! TGGTGTATATCTTGGTGCAG+TGG + chr4_3:58603689-58603708 Msa0651240:CDS 45.0%
!! AATGGACTGGTCATAGAGTC+TGG + chr4_3:58603840-58603859 Msa0651240:intron 45.0%
AGAGTCTGGATGAGTCATAG+AGG + chr4_3:58603854-58603873 Msa0651240:intron 45.0%
!!! CACCCCATAAGCTAGCTTTT+GGG - chr4_3:58604288-58604307 None:intergenic 45.0%
!!! TCACCCCATAAGCTAGCTTT+TGG - chr4_3:58604289-58604308 None:intergenic 45.0%
GGCAGGCAAGTGATTAAAGT+TGG + chr4_3:58605177-58605196 Msa0651240:CDS 45.0%
CTTCAAGGTCAAACGTTTGC+TGG - chr4_3:58605308-58605327 None:intergenic 45.0%
CAGCAAACGTTTGACCTTGA+AGG + chr4_3:58605306-58605325 Msa0651240:CDS 45.0%
TTTGACCTTGAAGGCGATAG+TGG + chr4_3:58605315-58605334 Msa0651240:CDS 45.0%
!! GGAAGCCTTATTCTCTTGAC+TGG + chr4_3:58605336-58605355 Msa0651240:CDS 45.0%
ACCACTTGTCCAATTCTCAG+GGG - chr4_3:58605448-58605467 None:intergenic 45.0%
CACCACTTGTCCAATTCTCA+GGG - chr4_3:58605449-58605468 None:intergenic 45.0%
ACACCACTTGTCCAATTCTC+AGG - chr4_3:58605450-58605469 None:intergenic 45.0%
! TCCGTTTTCATCTCAGTCTC+AGG + chr4_3:58605718-58605737 Msa0651240:intron 45.0%
!! GCTGGAATTGGTTCTACAGT+TGG + chr4_3:58605948-58605967 Msa0651240:CDS 45.0%
GACGGTTTGACTATCGTAGA+TGG - chr4_3:58606065-58606084 None:intergenic 45.0%
GGATTGAGAGCTCACCATTC+TGG + chr4_3:58602496-58602515 Msa0651240:CDS 50.0%
CTTGGCCTACATTGAATCGC+TGG + chr4_3:58602650-58602669 Msa0651240:CDS 50.0%
GAATGACGCAGCAGAAGACA+GGG + chr4_3:58602672-58602691 Msa0651240:CDS 50.0%
GGCAATCGACCCAAAGTTTC+AGG - chr4_3:58602733-58602752 None:intergenic 50.0%
GCGATTGGATTTCGGATCAG+AGG + chr4_3:58602841-58602860 Msa0651240:CDS 50.0%
!! CAGCAGGTAGGCATTGAACA+TGG - chr4_3:58602936-58602955 None:intergenic 50.0%
! GGTTCTTCTGGCTATGTTGC+AGG + chr4_3:58602976-58602995 Msa0651240:CDS 50.0%
AGGCTGGCATGGTTCCTTTA+TGG - chr4_3:58603205-58603224 None:intergenic 50.0%
TTGGTGCGACGTAGATGTTG+TGG + chr4_3:58603310-58603329 Msa0651240:CDS 50.0%
!! GGAGCTTGCTGATGGCTTAA+GGG + chr4_3:58603385-58603404 Msa0651240:CDS 50.0%
!! GAGCTTGCTGATGGCTTAAG+GGG + chr4_3:58603386-58603405 Msa0651240:CDS 50.0%
CAAGAGATGATCCTTGTCCG+AGG - chr4_3:58604318-58604337 None:intergenic 50.0%
TTGGATCACCGCATGAGAGA+TGG - chr4_3:58604356-58604375 None:intergenic 50.0%
TCTCTCATGCGGTGATCCAA+TGG + chr4_3:58604356-58604375 Msa0651240:intron 50.0%
GACAGATCGCACGAGAAGAT+TGG + chr4_3:58604455-58604474 Msa0651240:intron 50.0%
! GCACGAGAAGATTGGCTGAA+GGG + chr4_3:58604463-58604482 Msa0651240:intron 50.0%
! CACGAGAAGATTGGCTGAAG+GGG + chr4_3:58604464-58604483 Msa0651240:intron 50.0%
ATCTTGGACATGAGGGACTG+TGG - chr4_3:58604559-58604578 None:intergenic 50.0%
ATCAGGCCACAGCAGATGTT+CGG - chr4_3:58604610-58604629 None:intergenic 50.0%
GAGACTGCAAATCTATGCGG+TGG - chr4_3:58605140-58605159 None:intergenic 50.0%
TTGTCCAATTCTCAGGGGGT+TGG - chr4_3:58605443-58605462 None:intergenic 50.0%
CCACTTGTCCAATTCTCAGG+GGG - chr4_3:58605447-58605466 None:intergenic 50.0%
!! TGGACAAGTGGTGTTGACCT+TGG + chr4_3:58605456-58605475 Msa0651240:CDS 50.0%
!! CAAGTGGTGTTGACCTTGGA+CGG + chr4_3:58605460-58605479 Msa0651240:CDS 50.0%
TCGGGGCAAGAGCAAATGAA+TGG + chr4_3:58605918-58605937 Msa0651240:CDS 50.0%
GGAATGACGCAGCAGAAGAC+AGG + chr4_3:58602671-58602690 Msa0651240:CDS 55.0%
ACTTTGGGTCGATTGCCGTC+AGG + chr4_3:58602736-58602755 Msa0651240:CDS 55.0%
GTAGTAGCCTGCTGTCCTGA+CGG - chr4_3:58602754-58602773 None:intergenic 55.0%
! GCCCTTGAGGTGGGGAATTT+TGG + chr4_3:58602955-58602974 Msa0651240:CDS 55.0%
TCTTGTAAACAGGGGCCAGG+AGG + chr4_3:58603284-58603303 Msa0651240:intron 55.0%
!! CGGAGCTTGCTGATGGCTTA+AGG + chr4_3:58603384-58603403 Msa0651240:CDS 55.0%
AGGGGAAGCGATTCATGCGT+TGG + chr4_3:58603404-58603423 Msa0651240:CDS 55.0%
!! AGCGATTCATGCGTTGGCTC+TGG + chr4_3:58603410-58603429 Msa0651240:CDS 55.0%
!! ATGCGTTGGCTCTGGTTCTC+AGG + chr4_3:58603418-58603437 Msa0651240:CDS 55.0%
CATCCTTTGCCACCCAGTCT+TGG + chr4_3:58603663-58603682 Msa0651240:CDS 55.0%
! TTATGGGGTGAGCGTTGCCT+CGG + chr4_3:58604298-58604317 Msa0651240:intron 55.0%
CTGTGCTGCCATCTCTCATG+CGG + chr4_3:58604345-58604364 Msa0651240:intron 55.0%
CCTGCGGTAGTTACAACCGT+TGG - chr4_3:58604436-58604455 None:intergenic 55.0%
CCAACGGTTGTAACTACCGC+AGG + chr4_3:58604433-58604452 Msa0651240:intron 55.0%
TTCTCGTGCGATCTGTCCTG+CGG - chr4_3:58604452-58604471 None:intergenic 55.0%
! CGCACGAGAAGATTGGCTGA+AGG + chr4_3:58604462-58604481 Msa0651240:intron 55.0%
AGTGGGAGGCAACGCAGATT+CGG - chr4_3:58604492-58604511 None:intergenic 55.0%
GGCTTCCACTATCGCCTTCA+AGG - chr4_3:58605323-58605342 None:intergenic 55.0%
CAGATAATGCCAACAGGGCG+GGG - chr4_3:58605378-58605397 None:intergenic 55.0%
CCAGATAATGCCAACAGGGC+GGG - chr4_3:58605379-58605398 None:intergenic 55.0%
CCCAGATAATGCCAACAGGG+CGG - chr4_3:58605380-58605399 None:intergenic 55.0%
CCGCCCTGTTGGCATTATCT+GGG + chr4_3:58605377-58605396 Msa0651240:CDS 55.0%
CGCCCTGTTGGCATTATCTG+GGG + chr4_3:58605378-58605397 Msa0651240:CDS 55.0%
CGCCCCAGATAATGCCAACA+GGG - chr4_3:58605383-58605402 None:intergenic 55.0%
CCTGTTGGCATTATCTGGGG+CGG + chr4_3:58605381-58605400 Msa0651240:CDS 55.0%
! CTGTTGGCATTATCTGGGGC+GGG + chr4_3:58605382-58605401 Msa0651240:CDS 55.0%
TTGGCCAACCCCCTGAGAAT+TGG + chr4_3:58605436-58605455 Msa0651240:CDS 55.0%
CCCCCTGAGAATTGGACAAG+TGG + chr4_3:58605444-58605463 Msa0651240:CDS 55.0%
GGAGATCAAGAAGCCGTCCA+AGG - chr4_3:58605476-58605495 None:intergenic 55.0%
! TCAATCGGAGGAGTCGGCTC+TGG + chr4_3:58602525-58602544 Msa0651240:CDS 60.0%
TCGATTGCCGTCAGGACAGC+AGG + chr4_3:58602744-58602763 Msa0651240:CDS 60.0%
ATGCCTACCTGCTGCCCTTG+AGG + chr4_3:58602942-58602961 Msa0651240:CDS 60.0%
CTACCTGCTGCCCTTGAGGT+GGG + chr4_3:58602946-58602965 Msa0651240:CDS 60.0%
TACCTGCTGCCCTTGAGGTG+GGG + chr4_3:58602947-58602966 Msa0651240:CDS 60.0%
!! AACAGGGGCCAGGAGGTGTT+TGG + chr4_3:58603291-58603310 Msa0651240:intron 60.0%
ACGTCGCACCAAACACCTCC+TGG - chr4_3:58603302-58603321 None:intergenic 60.0%
GGTCCAAGACTGGGTGGCAA+AGG - chr4_3:58603669-58603688 None:intergenic 60.0%
TTGCCACCCAGTCTTGGACC+TGG + chr4_3:58603669-58603688 Msa0651240:CDS 60.0%
ACACCAGGTCCAAGACTGGG+TGG - chr4_3:58603675-58603694 None:intergenic 60.0%
GCAGGACCGAACATCTGCTG+TGG + chr4_3:58604601-58604620 Msa0651240:intron 60.0%
CCCGCCCTGTTGGCATTATC+TGG + chr4_3:58605376-58605395 Msa0651240:CDS 60.0%
CCGCCCCAGATAATGCCAAC+AGG - chr4_3:58605384-58605403 None:intergenic 60.0%
CCACCTCAAGGGCAGCAGGT+AGG - chr4_3:58602948-58602967 None:intergenic 65.0%
CCTACCTGCTGCCCTTGAGG+TGG + chr4_3:58602945-58602964 Msa0651240:CDS 65.0%
TTCCCCACCTCAAGGGCAGC+AGG - chr4_3:58602952-58602971 None:intergenic 65.0%
! GGTGAGCGTTGCCTCGGACA+AGG + chr4_3:58604304-58604323 Msa0651240:intron 65.0%
TGGGGCGGGACAGCTAATCG+AGG + chr4_3:58605396-58605415 Msa0651240:CDS 65.0%
!! GGAGGAGTCGGCTCTGGACC+TGG + chr4_3:58602531-58602550 Msa0651240:CDS 70.0%
AGGGAGAAGCCCCGCCCTGT+TGG + chr4_3:58605366-58605385 Msa0651240:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58602478 58606737 58602478 ID=Msa0651240;Name=Msa0651240
chr4_3 mRNA 58602478 58606737 58602478 ID=Msa0651240-mRNA-1;Parent=Msa0651240;Name=Msa0651240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.8|1|1|1|5|400|614
chr4_3 exon 58602478 58603014 58602478 ID=Msa0651240-mRNA-1:exon:15544;Parent=Msa0651240-mRNA-1
chr4_3 exon 58603296 58603439 58603296 ID=Msa0651240-mRNA-1:exon:15545;Parent=Msa0651240-mRNA-1
chr4_3 exon 58603534 58603774 58603534 ID=Msa0651240-mRNA-1:exon:15546;Parent=Msa0651240-mRNA-1
chr4_3 exon 58605034 58605534 58605034 ID=Msa0651240-mRNA-1:exon:15547;Parent=Msa0651240-mRNA-1
chr4_3 exon 58605916 58606737 58605916 ID=Msa0651240-mRNA-1:exon:15548;Parent=Msa0651240-mRNA-1
chr4_3 CDS 58602478 58603014 58602478 ID=Msa0651240-mRNA-1:cds;Parent=Msa0651240-mRNA-1
chr4_3 CDS 58603296 58603439 58603296 ID=Msa0651240-mRNA-1:cds;Parent=Msa0651240-mRNA-1
chr4_3 CDS 58603534 58603774 58603534 ID=Msa0651240-mRNA-1:cds;Parent=Msa0651240-mRNA-1
chr4_3 CDS 58605034 58605534 58605034 ID=Msa0651240-mRNA-1:cds;Parent=Msa0651240-mRNA-1
chr4_3 CDS 58605916 58606337 58605916 ID=Msa0651240-mRNA-1:cds;Parent=Msa0651240-mRNA-1
chr4_3 three_prime_UTR 58606338 58606737 58606338 ID=Msa0651240-mRNA-1:three_prime_utr;Parent=Msa0651240-mRNA-1
Gene Sequence

>Msa0651240

ATGAATCGGAATCGATTGGGATTGAGAGCTCACCATTCTGGATCAACTCAATCGGAGGAGTCGGCTCTGGACCTGGAAAGAAACTACTATGGTCATCCTTCATCCAGCCCTTTACACATGCAAACTTTTGCAGTTGGTGTTCAACATTCTGAGAGCAATGCTGCCTACTTTTCTTGGCCTACATTGAATCGCTGGAATGACGCAGCAGAAGACAGGGCTAACTATTTTGGTAATCTTCAAAAGGGAGTTCTACCTGAAACTTTGGGTCGATTGCCGTCAGGACAGCAGGCTACTACCTTGCTTGAACTTATGACTATTAGGGCATTTCATAGTAAGATTTTACGGCGATTTAGTCTTGGCACTGCGATTGGATTTCGGATCAGAGGAGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTTGTTGCGCATAAAGTTCACAGGCAATGGCTCAACCATGTTCAATGCCTACCTGCTGCCCTTGAGGTGGGGAATTTTGGTTCTTCTGGCTATGTTGCAGGTTTCTACATGGCTTTAGGGCCAGGAGGTGTTTGGTGCGACGTAGATGTTGTGGAGTTTTCTTATTATGGTGCACCGGCACAAACTCCTAAAGAACAATTATATACGGAGCTTGCTGATGGCTTAAGGGGAAGCGATTCATGCGTTGGCTCTGGTTCTCAGGTTGCAAGTCAAGAGACATATGGAACCTTGGGTGCTATTGTTAGAAGCCGAACAGGAAATCGAGAAGTTGGTTTTCTAACAAATCGACATGTAGCTGTTGATTTGGACTATCCGAACCAAAAGATGTTTCATCCTTTGCCACCCAGTCTTGGACCTGGTGTATATCTTGGTGCAGTGGAGAGAGCAACATCGTTTATTACTGATGATCTTTGGTATGGCATTTTTGCTGGAACAAACCCAGAAACATTTGTTCGAGCTGATGGGGCATTCATCCCATTCGCAGAAGACTTTAACATGAACAATGTAATTACATCTATAAGAGGTGTGGGTGATATTGGTGAAGTCCACCGCATAGATTTGCAGTCTCCAATCAACAGTCTTATTGGCAGGCAAGTGATTAAAGTTGGAAGAAGTTCTGGTTTGACTACAGGGACTATAATGGCCTATGCCCTTGAGTATAATGATGAGAAAGGTATTTGTTTTCTCACTGATTTTCTTGTCGTTGGTGAGAACCAGCAAACGTTTGACCTTGAAGGCGATAGTGGAAGCCTTATTCTCTTGACTGGTCAGAATAGGGAGAAGCCCCGCCCTGTTGGCATTATCTGGGGCGGGACAGCTAATCGAGGTCGTTTGAAACTAAGAGTTGGCCAACCCCCTGAGAATTGGACAAGTGGTGTTGACCTTGGACGGCTTCTTGATCTCCTTGAACTTGATCTCGTAACAACAAATGAAGCACTCCAAGATTCGGGGCAAGAGCAAATGAATGGTTCTACTGCTGGAATTGGTTCTACAGTTGGAGAATCATCTCCCACTGTGCCAATAAAAGAAAAGCTTGAAGAGAGCTTTGAGCCTTTTTGTTTGAATATGGAACACGTTCCAGTTGAAGAACCATCTACGATAGTCAAACCGTCATTAAGGCCTTGTGAATTTCATATCAGAAATGAGATTGAAACAGTTCCAAATGTTGAACACCAGTTCATACCAACAAGTTTTGCAGGAAAATCTCCGGTTCATCAAAGCTTCCTCAAAGAAGACTTGGAATTCAAAAGTCTATCTGAACTTAGGAATGAACCTGATGAAGATAATTTTGTTTCCTTGCATTTAGGAGAACCTGAAGCGAAGAGAAGAAAACATTCAAATTCTTCCTTATCATTGAAGAATTAA
Protein sequence

>Msa0651240

MNRNRLGLRAHHSGSTQSEESALDLERNYYGHPSSSPLHMQTFAVGVQHSESNAAYFSWPTLNRWNDAAEDRANYFGNLQKGVLPETLGRLPSGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRGGVLTDIPAILVFVAHKVHRQWLNHVQCLPAALEVGNFGSSGYVAGFYMALGPGGVWCDVDVVEFSYYGAPAQTPKEQLYTELADGLRGSDSCVGSGSQVASQETYGTLGAIVRSRTGNREVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNMNNVITSIRGVGDIGEVHRIDLQSPINSLIGRQVIKVGRSSGLTTGTIMAYALEYNDEKGICFLTDFLVVGENQQTFDLEGDSGSLILLTGQNREKPRPVGIIWGGTANRGRLKLRVGQPPENWTSGVDLGRLLDLLELDLVTTNEALQDSGQEQMNGSTAGIGSTVGESSPTVPIKEKLEESFEPFCLNMEHVPVEEPSTIVKPSLRPCEFHIRNEIETVPNVEHQFIPTSFAGKSPVHQSFLKEDLEFKSLSELRNEPDEDNFVSLHLGEPEAKRRKHSNSSLSLKN*