AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0579000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579000 MtrunA17_Chr4g0043641 96.091 614 7 1 1 614 1 597 0.0 1206
Msa0579000 MtrunA17_Chr2g0312121 69.579 618 159 8 1 609 1 598 0.0 815
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579000 AT5G45030.1 68.971 622 155 12 1 608 1 598 0.0 804
Msa0579000 AT5G45030.2 68.971 622 155 12 1 608 1 598 0.0 804
Msa0579000 AT2G35155.2 68.669 616 142 9 1 604 1 577 0.0 771
Msa0579000 AT2G35155.1 68.669 616 142 9 1 604 1 577 0.0 771
Msa0579000 AT3G12950.1 60.997 582 158 16 48 604 9 546 0.0 657

Find 176 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGCCCTGTTGGCATTATC+TGG 0.105074 4_1:-83684760 Msa0579000:CDS
GCCCTTGAGGTGGGGAATTT+TGG 0.138372 4_1:-83687181 Msa0579000:CDS
TGCTTGAACTTATGACTATT+AGG 0.184449 4_1:-83687360 Msa0579000:CDS
GGTTCTTCTGGCTATGTTGC+AGG 0.232873 4_1:-83687160 Msa0579000:CDS
TCTCCAATCAACAGTCTTAT+TGG 0.236068 4_1:-83684980 Msa0579000:CDS
GAAGACAGGGCTAACTATTT+TGG 0.246035 4_1:-83687451 Msa0579000:CDS
GGCAATCGACCCAAAGTTTC+AGG 0.261465 4_1:+83687406 None:intergenic
ATTAAAGTTGGAAGAAGTTC+TGG 0.278329 4_1:-83684947 Msa0579000:CDS
CGTTTATTACTGATGATCTT+TGG 0.282970 4_1:-83686412 Msa0579000:CDS
GCTTGAACTTATGACTATTA+GGG 0.290194 4_1:-83687359 Msa0579000:CDS
GGATTGAGAGCTCACCATTC+TGG 0.297569 4_1:-83687640 Msa0579000:CDS
GGGAGTTCTACCTGAAACTT+TGG 0.310248 4_1:-83687416 Msa0579000:CDS
CTTCAAGGTCAAACGTTTGC+TGG 0.313305 4_1:+83684831 None:intergenic
GCAAAGGATGAAACATCTTT+TGG 0.315003 4_1:+83686486 None:intergenic
TCTGACCAGTCAAGAGAATA+AGG 0.317561 4_1:+83684795 None:intergenic
TCCGTATATAATTGTTCTTT+AGG 0.319492 4_1:+83686771 None:intergenic
TCGACATGTAGCTGTTGATT+TGG 0.329058 4_1:-83686519 Msa0579000:CDS
TGTTCCATATTCAAACAAAA+AGG 0.337063 4_1:+83684113 None:intergenic
GAACACCTACTGTAAGTTAA+AGG 0.345534 4_1:-83683481 Msa0579000:three_prime_UTR
CGATAGTCAAACCGTCATTA+AGG 0.347794 4_1:-83684067 Msa0579000:CDS
CATCCTTTGCCACCCAGTCT+TGG 0.348079 4_1:-83686473 Msa0579000:CDS
GACCATAGTAGTTTCTTTCC+AGG 0.352728 4_1:+83687587 None:intergenic
AAATAAACAAGGTTCACTTC+TGG 0.354735 4_1:-83683669 Msa0579000:three_prime_UTR
TTGGCACTGCGATTGGATTT+CGG 0.357135 4_1:-83687303 Msa0579000:CDS
CGGAGCTTGCTGATGGCTTA+AGG 0.360883 4_1:-83686752 Msa0579000:CDS
CTGTTGAGCTTCAATCTATT+CGG 0.368305 4_1:-83683442 Msa0579000:three_prime_UTR
CAACTTCTCGATTTCCTGTT+CGG 0.374200 4_1:+83686555 None:intergenic
CCGCCCTGTTGGCATTATCT+GGG 0.377241 4_1:-83684759 Msa0579000:CDS
TCTCTTGACTGGTCAGAATA+GGG 0.378681 4_1:-83684789 Msa0579000:CDS
ACACCACTTGTCCAATTCTC+AGG 0.389026 4_1:+83684689 None:intergenic
TTGAGGAAGCTTTGATGAAC+CGG 0.389652 4_1:+83683957 None:intergenic
AATGGTTCTACTGCTGGAAT+TGG 0.393362 4_1:-83684200 Msa0579000:CDS
ATGCGTTGGCTCTGGTTCTC+AGG 0.395107 4_1:-83686718 Msa0579000:intron
CGAATAGATTGAAGCTCAAC+AGG 0.395263 4_1:+83683443 None:intergenic
ATCGTAGATGGTTCTTCAAC+TGG 0.397446 4_1:+83684086 None:intergenic
GAAACATTTGTTCGAGCTGA+TGG 0.400003 4_1:-83685103 Msa0579000:CDS
CTATGTTGCAGGTTTCTACA+TGG 0.403417 4_1:-83687149 Msa0579000:CDS
TCCTAAAGAACAATTATATA+CGG 0.407068 4_1:-83686772 Msa0579000:CDS
ATGAACTGGTGTTCAACATT+TGG 0.409902 4_1:+83684005 None:intergenic
TTCTCTTGACTGGTCAGAAT+AGG 0.410261 4_1:-83684790 Msa0579000:CDS
ATAAGAGGTGTGGGTGATAT+TGG 0.412482 4_1:-83685028 Msa0579000:CDS
GGCTTCCACTATCGCCTTCA+AGG 0.412585 4_1:+83684816 None:intergenic
GAAACAAAATTATCTTCATC+AGG 0.419421 4_1:+83683891 None:intergenic
GACGGTTTGACTATCGTAGA+TGG 0.421940 4_1:+83684074 None:intergenic
GGAGCTTGCTGATGGCTTAA+GGG 0.422751 4_1:-83686751 Msa0579000:CDS
CAGCAAACGTTTGACCTTGA+AGG 0.425621 4_1:-83684830 Msa0579000:CDS
GCTTTAATTCTTCAATGATA+AGG 0.425897 4_1:+83683818 None:intergenic
GGAATGACGCAGCAGAAGAC+AGG 0.426271 4_1:-83687465 Msa0579000:CDS
TTTAGTCTTGGCACTGCGAT+TGG 0.428958 4_1:-83687310 Msa0579000:CDS
CTTGGACCTGGTGTATATCT+TGG 0.435210 4_1:-83686455 Msa0579000:CDS
CCGCCCCAGATAATGCCAAC+AGG 0.435797 4_1:+83684755 None:intergenic
CGCATAAAGTTCACAGGCAA+TGG 0.438775 4_1:-83687231 Msa0579000:CDS
TTGTTACGAGATCAAGTTCA+AGG 0.439583 4_1:+83684642 None:intergenic
AGCGATTCATGCGTTGGCTC+TGG 0.442737 4_1:-83686726 Msa0579000:CDS
TTTGACTACAGGGACTATAA+TGG 0.443768 4_1:-83684924 Msa0579000:CDS
AGAAGTTCTGGTTTGACTAC+AGG 0.444792 4_1:-83684935 Msa0579000:CDS
TTTGACCTTGAAGGCGATAG+TGG 0.446618 4_1:-83684821 Msa0579000:CDS
ATTACTGATGATCTTTGGTA+TGG 0.447995 4_1:-83686407 Msa0579000:CDS
CCAGATAATGCCAACAGGGC+GGG 0.448428 4_1:+83684760 None:intergenic
TCAATCGGAGGAGTCGGCTC+TGG 0.448629 4_1:-83687611 Msa0579000:CDS
CAAAAGTTTGCATGTGTAAA+GGG 0.448865 4_1:+83687551 None:intergenic
GAGCTTCAATCTATTCGGTA+TGG 0.454176 4_1:-83683437 Msa0579000:three_prime_UTR
CATTGAAGAATTAAAGCAGC+AGG 0.456435 4_1:-83683812 Msa0579000:exon
CTACCTGCTGCCCTTGAGGT+GGG 0.457934 4_1:-83687190 Msa0579000:CDS
TATTATAAGCACTCTTGAAA+GGG 0.460882 4_1:-83683504 Msa0579000:three_prime_UTR
TTTAAAGCTCCACATACTAA+AGG 0.462335 4_1:+83683698 None:intergenic
TTGCCACCCAGTCTTGGACC+TGG 0.464075 4_1:-83686467 Msa0579000:CDS
GGAAGCCTTATTCTCTTGAC+TGG 0.464578 4_1:-83684800 Msa0579000:CDS
GGCAGGCAAGTGATTAAAGT+TGG 0.465112 4_1:-83684959 Msa0579000:CDS
CAAATGAATGGTTCTACTGC+TGG 0.465982 4_1:-83684206 Msa0579000:CDS
GCAAAAGTTTGCATGTGTAA+AGG 0.467669 4_1:+83687550 None:intergenic
TCAAAAGTCTATCTGAACTT+AGG 0.471695 4_1:-83683920 Msa0579000:CDS
AACAGGGGCCAGGAGGTGTT+TGG 0.472625 4_1:-83686845 Msa0579000:intron
TGAATTCCAAGTCTTCTTTG+AGG 0.474327 4_1:+83683940 None:intergenic
TCGATTGCCGTCAGGACAGC+AGG 0.474763 4_1:-83687392 Msa0579000:CDS
GCTATTGTTAGAAGCCGAAC+AGG 0.476533 4_1:-83686569 Msa0579000:CDS
CTTGGCCTACATTGAATCGC+TGG 0.479956 4_1:-83687486 Msa0579000:CDS
CAAGAGACATATGGAACCTT+GGG 0.482500 4_1:-83686593 Msa0579000:CDS
TTCCCCACCTCAAGGGCAGC+AGG 0.483181 4_1:+83687187 None:intergenic
CAAAACTTGTTGGTATGAAC+TGG 0.484004 4_1:+83683991 None:intergenic
AAGCTTCCTCAAAGAAGACT+TGG 0.488186 4_1:-83683946 Msa0579000:CDS
CGAACAGGAAATCGAGAAGT+TGG 0.491001 4_1:-83686554 Msa0579000:CDS
GGAGGAGTCGGCTCTGGACC+TGG 0.491608 4_1:-83687605 Msa0579000:CDS
GCTGGAATTGGTTCTACAGT+TGG 0.492581 4_1:-83684188 Msa0579000:CDS
CCTACCTGCTGCCCTTGAGG+TGG 0.495104 4_1:-83687191 Msa0579000:CDS
CTTTCTCATCATTATACTCA+AGG 0.497193 4_1:+83684894 None:intergenic
ATATACACCAGGTCCAAGAC+TGG 0.499323 4_1:+83686460 None:intergenic
GTATTATAAGCACTCTTGAA+AGG 0.499812 4_1:-83683505 Msa0579000:three_prime_UTR
CAGATAATGCCAACAGGGCG+GGG 0.500310 4_1:+83684761 None:intergenic
CCATTCTGGATCAACTCAAT+CGG 0.500907 4_1:-83687626 Msa0579000:CDS
TGTTAAAGTCTTCTGCGAAT+GGG 0.502215 4_1:+83685071 None:intergenic
AGGAGAGCTAACAGATGAAT+CGG 0.502366 4_1:-83687672 None:intergenic
ACTTTGGGTCGATTGCCGTC+AGG 0.503578 4_1:-83687400 Msa0579000:CDS
GGAGTTCTACCTGAAACTTT+GGG 0.504265 4_1:-83687415 Msa0579000:CDS
TACCTGCTGCCCTTGAGGTG+GGG 0.504336 4_1:-83687189 Msa0579000:CDS
CAGATGAATCGGAATCGATT+GGG 0.507056 4_1:-83687661 Msa0579000:CDS
AAACATTTGTTCGAGCTGAT+GGG 0.507807 4_1:-83685102 Msa0579000:CDS
ATGTTAAAGTCTTCTGCGAA+TGG 0.508003 4_1:+83685070 None:intergenic
ACGTCGCACCAAACACCTCC+TGG 0.508347 4_1:+83686837 None:intergenic
AGCTTCAATCTATTCGGTAT+GGG 0.512168 4_1:-83683436 Msa0579000:three_prime_UTR
ATGCCTACCTGCTGCCCTTG+AGG 0.515768 4_1:-83687194 Msa0579000:CDS
CAATCAACAGTCTTATTGGC+AGG 0.517169 4_1:-83684976 Msa0579000:CDS
GACCTGGAAAGAAACTACTA+TGG 0.518176 4_1:-83687589 Msa0579000:CDS
ACAGATGAATCGGAATCGAT+TGG 0.518990 4_1:-83687662 None:intergenic
ATTTCTTGTAAACAGGGGCC+AGG 0.519655 4_1:-83686855 Msa0579000:intron
CAATGTAGGCCAAGAAAAGT+AGG 0.521406 4_1:+83687495 None:intergenic
TCAAGAGACATATGGAACCT+TGG 0.523834 4_1:-83686594 Msa0579000:CDS
CAAGTGGTGTTGACCTTGGA+CGG 0.526076 4_1:-83684676 Msa0579000:CDS
GTTGCAAGTCAAGAGACATA+TGG 0.529263 4_1:-83686602 Msa0579000:CDS
GAAGTTCTGGTTTGACTACA+GGG 0.529598 4_1:-83684934 Msa0579000:CDS
AGGGGAAGCGATTCATGCGT+TGG 0.531667 4_1:-83686732 Msa0579000:CDS
AAGCAAAGGCCTTTAGTATG+TGG 0.534975 4_1:-83683707 Msa0579000:three_prime_UTR
TTGTTGCGCATAAAGTTCAC+AGG 0.536854 4_1:-83687237 Msa0579000:CDS
CTGTTGGCATTATCTGGGGC+GGG 0.537553 4_1:-83684754 Msa0579000:CDS
AATGTAATTACATCTATAAG+AGG 0.538978 4_1:-83685043 Msa0579000:CDS
CTTGAGTATAATGATGAGAA+AGG 0.539050 4_1:-83684893 Msa0579000:CDS
GGTCCAAGACTGGGTGGCAA+AGG 0.540512 4_1:+83686470 None:intergenic
AGTTTGCATGTGTAAAGGGC+TGG 0.544378 4_1:+83687555 None:intergenic
ATCAACTCAATCGGAGGAGT+CGG 0.544805 4_1:-83687617 Msa0579000:CDS
ACCAAAATTCCCCACCTCAA+GGG 0.545097 4_1:+83687180 None:intergenic
AGGGAGAAGCCCCGCCCTGT+TGG 0.546538 4_1:-83684770 Msa0579000:CDS
TGGACAAGTGGTGTTGACCT+TGG 0.549702 4_1:-83684680 Msa0579000:CDS
AACCAAAATTCCCCACCTCA+AGG 0.551920 4_1:+83687179 None:intergenic
CTGCCAATAAGACTGTTGAT+TGG 0.554370 4_1:+83684977 None:intergenic
CCGATTGAGTTGATCCAGAA+TGG 0.554613 4_1:+83687626 None:intergenic
TTTCTCATCATTATACTCAA+GGG 0.557070 4_1:+83684895 None:intergenic
CCTGTTGGCATTATCTGGGG+CGG 0.557596 4_1:-83684755 Msa0579000:CDS
AACATTTGTTCGAGCTGATG+GGG 0.557640 4_1:-83685101 Msa0579000:CDS
CACCACTTGTCCAATTCTCA+GGG 0.562663 4_1:+83684690 None:intergenic
TCATTCCAGCGATTCAATGT+AGG 0.567273 4_1:+83687481 None:intergenic
ATTGAAGAATTAAAGCAGCA+GGG 0.568516 4_1:-83683811 Msa0579000:exon
CGCCCTGTTGGCATTATCTG+GGG 0.569716 4_1:-83684758 Msa0579000:CDS
TTATATACGGAGCTTGCTGA+TGG 0.572499 4_1:-83686759 Msa0579000:CDS
ATTACATCTATAAGAGGTGT+GGG 0.575644 4_1:-83685037 Msa0579000:CDS
GAGCTTGCTGATGGCTTAAG+GGG 0.577403 4_1:-83686750 Msa0579000:CDS
TTCAGGTTCTCCTAAATGCA+AGG 0.582236 4_1:+83683869 None:intergenic
TCGGGGCAAGAGCAAATGAA+TGG 0.582918 4_1:-83684218 Msa0579000:CDS
CCCAGATAATGCCAACAGGG+CGG 0.586699 4_1:+83684759 None:intergenic
AATTCACAAGGCCTTAATGA+CGG 0.588146 4_1:+83684056 None:intergenic
TCGTCGCTTTAGAAAAGCAA+AGG 0.589195 4_1:-83683721 Msa0579000:three_prime_UTR
ATGTGTAAAGGGCTGGATGA+AGG 0.592242 4_1:+83687562 None:intergenic
ACATTCCTTTAACTTACAGT+AGG 0.594805 4_1:+83683476 None:intergenic
GCAACAAAGACAAGAATAGC+TGG 0.595801 4_1:+83687253 None:intergenic
GCTTCTAACAATAGCACCCA+AGG 0.596747 4_1:+83686577 None:intergenic
CCACCTCAAGGGCAGCAGGT+AGG 0.597414 4_1:+83687191 None:intergenic
AATTACATCTATAAGAGGTG+TGG 0.598962 4_1:-83685038 Msa0579000:CDS
GCGATTGGATTTCGGATCAG+AGG 0.599232 4_1:-83687295 Msa0579000:CDS
CGCCCCAGATAATGCCAACA+GGG 0.599609 4_1:+83684756 None:intergenic
TGCAGCATATAAACTCATTG+AGG 0.600323 4_1:-83683768 Msa0579000:three_prime_UTR
AATAGTCATAAGTTCAAGCA+AGG 0.603800 4_1:+83687363 None:intergenic
TTGAAGAATTAAAGCAGCAG+GGG 0.608596 4_1:-83683810 Msa0579000:exon
ATTGGATTTCGGATCAGAGG+AGG 0.612176 4_1:-83687292 Msa0579000:CDS
ATTATAAGCACTCTTGAAAG+GGG 0.613073 4_1:-83683503 Msa0579000:three_prime_UTR
TATACACCAGGTCCAAGACT+GGG 0.615295 4_1:+83686461 None:intergenic
GGTCGTTTGAAACTAAGAGT+TGG 0.615590 4_1:-83684719 Msa0579000:CDS
GGAGATCAAGAAGCCGTCCA+AGG 0.617388 4_1:+83684663 None:intergenic
TGTTCTTTAGGAGTTTGTGC+CGG 0.626199 4_1:+83686783 None:intergenic
CAGCAGGTAGGCATTGAACA+TGG 0.626384 4_1:+83687203 None:intergenic
TGGTGTATATCTTGGTGCAG+TGG 0.629669 4_1:-83686447 Msa0579000:CDS
TTCTGGATCAACTCAATCGG+AGG 0.631741 4_1:-83687623 Msa0579000:CDS
GTAGTAGCCTGCTGTCCTGA+CGG 0.633757 4_1:+83687385 None:intergenic
GAGACTGCAAATCTATGCGG+TGG 0.634596 4_1:+83684999 None:intergenic
GAATGACGCAGCAGAAGACA+GGG 0.639240 4_1:-83687464 Msa0579000:CDS
ACAACAAATGAAGCACTCCA+AGG 0.643602 4_1:-83684623 Msa0579000:intron
ATCATTATACTCAAGGGCAT+AGG 0.644610 4_1:+83684901 None:intergenic
ATAATACAAAGTCTACAAAG+TGG 0.646869 4_1:+83683521 None:intergenic
CCACTTGTCCAATTCTCAGG+GGG 0.658338 4_1:+83684692 None:intergenic
TTGGTGCGACGTAGATGTTG+TGG 0.658994 4_1:-83686826 Msa0579000:CDS
TCTTGTAAACAGGGGCCAGG+AGG 0.664800 4_1:-83686852 Msa0579000:intron
AAACTGATGCTAATGTACAA+GGG 0.688415 4_1:+83683406 None:intergenic
TTTCTGATATGAAATTCACA+AGG 0.697960 4_1:+83684044 None:intergenic
ACCACTTGTCCAATTCTCAG+GGG 0.709383 4_1:+83684691 None:intergenic
ACACCAGGTCCAAGACTGGG+TGG 0.716030 4_1:+83686464 None:intergenic
ACTGCACCAAGATATACACC+AGG 0.724639 4_1:+83686449 None:intergenic
TGGGGCGGGACAGCTAATCG+AGG 0.725183 4_1:-83684740 Msa0579000:CDS
TTGGAGACTGCAAATCTATG+CGG 0.782914 4_1:+83684996 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATATTTTTACAGATAAA+TGG + chr4_1:83684118-83684137 None:intergenic 15.0%
!!! TTCCTTATTTAATAAGAATT+GGG + chr4_1:83684989-83685008 None:intergenic 15.0%
!!! TAGTTATATTTTGATATTGT+TGG + chr4_1:83685742-83685761 None:intergenic 15.0%
!!! ATAGTTTTATTGAAGTTATA+GGG + chr4_1:83685807-83685826 None:intergenic 15.0%
!! GATTTATACAAGTTTATAAA+AGG - chr4_1:83686535-83686554 Msa0579000:CDS 15.0%
!! TAAATGATGTTAGAAATTAT+TGG + chr4_1:83686568-83686587 None:intergenic 15.0%
!! TTTATACATTGAAAGAAAAA+AGG + chr4_1:83686739-83686758 None:intergenic 15.0%
!!! TATTTTGGTAATCTTCAAAA+GGG - chr4_1:83683643-83683662 Msa0579000:three_prime_UTR 20.0%
!!! CATTTCATAGTAAGATTTTA+CGG - chr4_1:83683743-83683762 Msa0579000:three_prime_UTR 20.0%
!!! AATGGAATTTATATTGGTTA+AGG + chr4_1:83684100-83684119 None:intergenic 20.0%
!! CAGATAAATGGAATTTATAT+TGG + chr4_1:83684106-83684125 None:intergenic 20.0%
!! TGTTTACAAGAAATAAGAAA+TGG + chr4_1:83684218-83684237 None:intergenic 20.0%
!!! ATTTCTTATTTCTTGTAAAC+AGG - chr4_1:83684217-83684236 Msa0579000:CDS 20.0%
!!! TTTCTTATTTCTTGTAAACA+GGG - chr4_1:83684218-83684237 Msa0579000:CDS 20.0%
!! TCCTAAAGAACAATTATATA+CGG - chr4_1:83684307-83684326 Msa0579000:intron 20.0%
!! AAAGGTTATATACAAAAAAG+AGG + chr4_1:83684438-83684457 None:intergenic 20.0%
!! AATTTGAAAACAAATTACCT+GGG + chr4_1:83684716-83684735 None:intergenic 20.0%
!! ATAGTAATTTCTTACTGATA+TGG - chr4_1:83684894-83684913 Msa0579000:CDS 20.0%
!!! CTTCCTTATTTAATAAGAAT+TGG + chr4_1:83684990-83685009 None:intergenic 20.0%
!! AATCATATCTCTTAGAATTT+GGG - chr4_1:83685188-83685207 Msa0579000:intron 20.0%
!! CTAAAATAGTTGTTATAAGT+GGG + chr4_1:83685452-83685471 None:intergenic 20.0%
!!! CTAAAACTCAAATTCTAAAA+TGG + chr4_1:83685624-83685643 None:intergenic 20.0%
!!! CATTTTAGAATTTGAGTTTT+AGG - chr4_1:83685622-83685641 Msa0579000:intron 20.0%
!!! GATAGTTTTATTGAAGTTAT+AGG + chr4_1:83685808-83685827 None:intergenic 20.0%
!!! TTATGATTTAACTTTCTTGA+AGG - chr4_1:83685913-83685932 Msa0579000:intron 20.0%
!!! TATGATTTAACTTTCTTGAA+GGG - chr4_1:83685914-83685933 Msa0579000:intron 20.0%
!! AATGTAATTACATCTATAAG+AGG - chr4_1:83686036-83686055 Msa0579000:intron 20.0%
!!! ACATTAACTTTGTTTATAAC+GGG + chr4_1:83686640-83686659 None:intergenic 20.0%
!!! CACATTAACTTTGTTTATAA+CGG + chr4_1:83686641-83686660 None:intergenic 20.0%
!! AATCATTATCAATTGTTAGT+TGG - chr4_1:83686761-83686780 Msa0579000:CDS 20.0%
!! GTATTCCTCAAATAAATAAA+CGG + chr4_1:83686802-83686821 None:intergenic 20.0%
!! TTAAAAGCGAAAAATAAACA+AGG - chr4_1:83687399-83687418 Msa0579000:CDS 20.0%
!!! TTTTATTTTCATGTTCGATA+AGG - chr4_1:83687450-83687469 Msa0579000:CDS 20.0%
!!! CTATTTTGGTAATCTTCAAA+AGG - chr4_1:83683642-83683661 Msa0579000:three_prime_UTR 25.0%
!! TTGAATTGAAAAGTGTAATG+AGG + chr4_1:83683966-83683985 None:intergenic 25.0%
! CAACAATCTATAAAACCTAT+CGG + chr4_1:83684047-83684066 None:intergenic 25.0%
!!! GATAGGTTTTATAGATTGTT+GGG - chr4_1:83684046-83684065 Msa0579000:CDS 25.0%
!!! ATAGGTTTTATAGATTGTTG+GGG - chr4_1:83684047-83684066 Msa0579000:CDS 25.0%
!! TTCTTATTTCTTGTAAACAG+GGG - chr4_1:83684219-83684238 Msa0579000:CDS 25.0%
! TCCGTATATAATTGTTCTTT+AGG + chr4_1:83684311-83684330 None:intergenic 25.0%
! CAATTTGAAAACAAATTACC+TGG + chr4_1:83684717-83684736 None:intergenic 25.0%
!! CATCATGAATATTTTACATG+TGG - chr4_1:83684742-83684761 Msa0579000:CDS 25.0%
! TGATCGATGAAAAAGAATAA+TGG - chr4_1:83684765-83684784 Msa0579000:CDS 25.0%
! ATATGGTGTGAATAATATGT+TGG - chr4_1:83684911-83684930 Msa0579000:CDS 25.0%
! CTCCCAATTCTTATTAAATA+AGG - chr4_1:83684984-83685003 Msa0579000:CDS 25.0%
!!! TTATCTCTTAGGATTAGTTT+CGG - chr4_1:83685056-83685075 Msa0579000:CDS 25.0%
! TGTTGTATTAGTATAAGTGA+GGG - chr4_1:83685129-83685148 Msa0579000:intron 25.0%
! CAATCATATCTCTTAGAATT+TGG - chr4_1:83685187-83685206 Msa0579000:intron 25.0%
! AATTAAATAGTCTCAACCAT+TGG + chr4_1:83685318-83685337 None:intergenic 25.0%
! GCTAAAATAGTTGTTATAAG+TGG + chr4_1:83685453-83685472 None:intergenic 25.0%
! ACTTCAATAAAACTATCTCT+TGG - chr4_1:83685811-83685830 Msa0579000:intron 25.0%
!!! ACAAGTTTGACATTTTTCAA+AGG + chr4_1:83685868-83685887 None:intergenic 25.0%
!! TAACAAAATGGTAATGAGAA+TGG + chr4_1:83685949-83685968 None:intergenic 25.0%
! TTTCTCATCATTATACTCAA+GGG + chr4_1:83686187-83686206 None:intergenic 25.0%
! CAAAATGTGGTTTAATTCAA+AGG - chr4_1:83686487-83686506 Msa0579000:CDS 25.0%
!! TCTTCAAGCTTTTCTTTTAT+TGG + chr4_1:83686936-83686955 None:intergenic 25.0%
! TGTTCCATATTCAAACAAAA+AGG + chr4_1:83686969-83686988 None:intergenic 25.0%
! TTTCTGATATGAAATTCACA+AGG + chr4_1:83687038-83687057 None:intergenic 25.0%
! GAAACAAAATTATCTTCATC+AGG + chr4_1:83687191-83687210 None:intergenic 25.0%
!!! AATTTTGTTTCCTTGCATTT+AGG - chr4_1:83687200-83687219 Msa0579000:CDS 25.0%
! GCTTTAATTCTTCAATGATA+AGG + chr4_1:83687264-83687283 None:intergenic 25.0%
! ATAATACAAAGTCTACAAAG+TGG + chr4_1:83687561-83687580 None:intergenic 25.0%
! TATTATAAGCACTCTTGAAA+GGG - chr4_1:83687575-83687594 Msa0579000:CDS 25.0%
CAAAAGTTTGCATGTGTAAA+GGG + chr4_1:83683531-83683550 None:intergenic 30.0%
AATAGTCATAAGTTCAAGCA+AGG + chr4_1:83683719-83683738 None:intergenic 30.0%
TGCTTGAACTTATGACTATT+AGG - chr4_1:83683719-83683738 Msa0579000:three_prime_UTR 30.0%
GCTTGAACTTATGACTATTA+GGG - chr4_1:83683720-83683739 Msa0579000:three_prime_UTR 30.0%
AGAAAAGAAGAAAAACTGTG+TGG + chr4_1:83684006-83684025 None:intergenic 30.0%
AATCTATAAAACCTATCGGT+CGG + chr4_1:83684043-83684062 None:intergenic 30.0%
!! CGATAGGTTTTATAGATTGT+TGG - chr4_1:83684045-83684064 Msa0579000:CDS 30.0%
ATATCATCTCAAAGCCATAA+AGG - chr4_1:83684131-83684150 Msa0579000:CDS 30.0%
CCAACCTATATACCATAAAA+AGG + chr4_1:83684168-83684187 None:intergenic 30.0%
! CCTTTTTATGGTATATAGGT+TGG - chr4_1:83684165-83684184 Msa0579000:CDS 30.0%
! GTTGTGGAGTTTTCTTATTA+TGG - chr4_1:83684269-83684288 Msa0579000:intron 30.0%
TTCAAGGAGAAGAAGTTAAA+AGG + chr4_1:83684456-83684475 None:intergenic 30.0%
!!! TTTTAACTTCTTCTCCTTGA+AGG - chr4_1:83684455-83684474 Msa0579000:intron 30.0%
CGTTTATTACTGATGATCTT+TGG - chr4_1:83684667-83684686 Msa0579000:CDS 30.0%
ATTACTGATGATCTTTGGTA+TGG - chr4_1:83684672-83684691 Msa0579000:CDS 30.0%
!! GATGAAAAAGAATAATGGAC+TGG - chr4_1:83684770-83684789 Msa0579000:CDS 30.0%
AAAACCTTATAGCTTCAACA+TGG + chr4_1:83684840-83684859 None:intergenic 30.0%
!! GTTTTAGTCTGAGTTAAAAG+AGG - chr4_1:83684855-83684874 Msa0579000:CDS 30.0%
GTGTTGTATTAGTATAAGTG+AGG - chr4_1:83685128-83685147 Msa0579000:intron 30.0%
ATTAGTATAAGTGAGGGTTA+AGG - chr4_1:83685135-83685154 Msa0579000:intron 30.0%
!!! CTAGCTTTTGGGATTATATA+GGG + chr4_1:83685220-83685239 None:intergenic 30.0%
AAATAGTTGTTATAAGTGGG+AGG + chr4_1:83685449-83685468 None:intergenic 30.0%
!! AATTTTGATCTTGGACATGA+GGG + chr4_1:83685509-83685528 None:intergenic 30.0%
!! AAATTTTGATCTTGGACATG+AGG + chr4_1:83685510-83685529 None:intergenic 30.0%
!! CACACTTCAAATTTTGATCT+TGG + chr4_1:83685518-83685537 None:intergenic 30.0%
TTGTTTGGACAACTATTATC+AGG + chr4_1:83685570-83685589 None:intergenic 30.0%
GTTGTCATGAATATGTTGTT+TGG + chr4_1:83685585-83685604 None:intergenic 30.0%
!! CTCAAATTCTAAAATGGTAC+TGG + chr4_1:83685618-83685637 None:intergenic 30.0%
!!! CTAAATTTTCGGGTTGAATT+AGG + chr4_1:83685648-83685667 None:intergenic 30.0%
AACCCGAAAATTTAGCTAAA+AGG - chr4_1:83685653-83685672 Msa0579000:intron 30.0%
ACCCGAAAATTTAGCTAAAA+GGG - chr4_1:83685654-83685673 Msa0579000:intron 30.0%
!! ACCCTTTTAGCTAAATTTTC+GGG + chr4_1:83685658-83685677 None:intergenic 30.0%
!! CACCCTTTTAGCTAAATTTT+CGG + chr4_1:83685659-83685678 None:intergenic 30.0%
AAAATTTAGCTAAAAGGGTG+CGG - chr4_1:83685659-83685678 Msa0579000:intron 30.0%
AAAATAGTGGTTAGAAGTGA+GGG + chr4_1:83685690-83685709 None:intergenic 30.0%
AAAAATAGTGGTTAGAAGTG+AGG + chr4_1:83685691-83685710 None:intergenic 30.0%
AGCAATATGGCAAAAAATAG+TGG + chr4_1:83685703-83685722 None:intergenic 30.0%
GTTTCTGCAAGATAACAAAA+TGG + chr4_1:83685961-83685980 None:intergenic 30.0%
AATTACATCTATAAGAGGTG+TGG - chr4_1:83686041-83686060 Msa0579000:intron 30.0%
! ATTACATCTATAAGAGGTGT+GGG - chr4_1:83686042-83686061 Msa0579000:intron 30.0%
ATTAAAGTTGGAAGAAGTTC+TGG - chr4_1:83686132-83686151 Msa0579000:intron 30.0%
CTTTCTCATCATTATACTCA+AGG + chr4_1:83686188-83686207 None:intergenic 30.0%
CTTGAGTATAATGATGAGAA+AGG - chr4_1:83686186-83686205 Msa0579000:intron 30.0%
!! CACATTTTGAAAACAAACCT+TGG + chr4_1:83686476-83686495 None:intergenic 30.0%
!! CAAGGTTTGTTTTCAAAATG+TGG - chr4_1:83686474-83686493 Msa0579000:CDS 30.0%
TACAAGTTTATAAAAGGAGC+TGG - chr4_1:83686541-83686560 Msa0579000:CDS 30.0%
ACAAGTTTATAAAAGGAGCT+GGG - chr4_1:83686542-83686561 Msa0579000:CDS 30.0%
TGTATGCATAATCCATAAGA+AGG + chr4_1:83686698-83686717 None:intergenic 30.0%
AAAAAAGGACATTTGTATGC+AGG + chr4_1:83686724-83686743 None:intergenic 30.0%
TAAATAAACGGTTCAGGAAA+GGG + chr4_1:83686790-83686809 None:intergenic 30.0%
ATAAATAAACGGTTCAGGAA+AGG + chr4_1:83686791-83686810 None:intergenic 30.0%
CTCAAATAAATAAACGGTTC+AGG + chr4_1:83686796-83686815 None:intergenic 30.0%
CTGAACCGTTTATTTATTTG+AGG - chr4_1:83686794-83686813 Msa0579000:CDS 30.0%
! TCTAAAATACAGCCAAAGAA+AGG + chr4_1:83686840-83686859 None:intergenic 30.0%
!! CTTTGGCTGTATTTTAGATT+CGG - chr4_1:83686842-83686861 Msa0579000:CDS 30.0%
!! TTTGGCTGTATTTTAGATTC+GGG - chr4_1:83686843-83686862 Msa0579000:CDS 30.0%
! TTTTCTTTTATTGGCACAGT+GGG + chr4_1:83686927-83686946 None:intergenic 30.0%
!! TGAGCCTTTTTGTTTGAATA+TGG - chr4_1:83686962-83686981 Msa0579000:intron 30.0%
TCAAAAGTCTATCTGAACTT+AGG - chr4_1:83687159-83687178 Msa0579000:CDS 30.0%
ATTGAAGAATTAAAGCAGCA+GGG - chr4_1:83687268-83687287 Msa0579000:CDS 30.0%
! TTTAAAGCTCCACATACTAA+AGG + chr4_1:83687384-83687403 None:intergenic 30.0%
AAATAAACAAGGTTCACTTC+TGG - chr4_1:83687410-83687429 Msa0579000:CDS 30.0%
!! AGCTGTGTAGTATTTTAAAG+AGG - chr4_1:83687494-83687513 Msa0579000:CDS 30.0%
GTATTATAAGCACTCTTGAA+AGG - chr4_1:83687574-83687593 Msa0579000:CDS 30.0%
ATTATAAGCACTCTTGAAAG+GGG - chr4_1:83687576-83687595 Msa0579000:CDS 30.0%
! ACATTCCTTTAACTTACAGT+AGG + chr4_1:83687606-83687625 None:intergenic 30.0%
GCAAAAGTTTGCATGTGTAA+AGG + chr4_1:83683532-83683551 None:intergenic 35.0%
! ATTTTACGGCGATTTAGTCT+TGG - chr4_1:83683757-83683776 Msa0579000:three_prime_UTR 35.0%
AGTAATTTAATCCGACCGAT+AGG - chr4_1:83684029-83684048 Msa0579000:CDS 35.0%
CCTATATACCATAAAAAGGC+TGG + chr4_1:83684164-83684183 None:intergenic 35.0%
! CCAGCCTTTTTATGGTATAT+AGG - chr4_1:83684161-83684180 Msa0579000:CDS 35.0%
! GTTTTCTTATTATGGTGCAC+CGG - chr4_1:83684277-83684296 Msa0579000:intron 35.0%
! AGTTGATTCTCATGAGCAAA+AGG + chr4_1:83684388-83684407 None:intergenic 35.0%
!! GGATGAAACATCTTTTGGTT+CGG + chr4_1:83684591-83684610 None:intergenic 35.0%
! GCAAAGGATGAAACATCTTT+TGG + chr4_1:83684596-83684615 None:intergenic 35.0%
GTTACCATGTTGAAGCTATA+AGG - chr4_1:83684833-83684852 Msa0579000:CDS 35.0%
GTCTGAGTTAAAAGAGGAAA+AGG - chr4_1:83684861-83684880 Msa0579000:CDS 35.0%
AGCGTCTTGAATTATCTCTT+AGG - chr4_1:83685045-83685064 Msa0579000:CDS 35.0%
!!! GCTAGCTTTTGGGATTATAT+AGG + chr4_1:83685221-83685240 None:intergenic 35.0%
! TAATCCCAAAAGCTAGCTTA+TGG - chr4_1:83685224-83685243 Msa0579000:intron 35.0%
! AATCCCAAAAGCTAGCTTAT+GGG - chr4_1:83685225-83685244 Msa0579000:intron 35.0%
TCATCCATGTATAGATCCAA+CGG - chr4_1:83685360-83685379 Msa0579000:intron 35.0%
AATCTCACATGACAGTGATA+TGG + chr4_1:83685475-83685494 None:intergenic 35.0%
! ATTTGAAGTGTGAAGTTTGC+AGG - chr4_1:83685526-83685545 Msa0579000:intron 35.0%
! AAATGGTACTGGAATCTTGT+CGG + chr4_1:83685607-83685626 None:intergenic 35.0%
! AAATTTAGCTAAAAGGGTGC+GGG - chr4_1:83685660-83685679 Msa0579000:intron 35.0%
TGCCATATTGCTAATTAACG+TGG - chr4_1:83685711-83685730 Msa0579000:intron 35.0%
GCCATATTGCTAATTAACGT+GGG - chr4_1:83685712-83685731 Msa0579000:intron 35.0%
ACCCACGTTAATTAGCAATA+TGG + chr4_1:83685716-83685735 None:intergenic 35.0%
!! ATTTTTCAAAGGATTGCCTC+AGG + chr4_1:83685857-83685876 None:intergenic 35.0%
AAACATTTGTTCGAGCTGAT+GGG - chr4_1:83685977-83685996 Msa0579000:intron 35.0%
TGTTAAAGTCTTCTGCGAAT+GGG + chr4_1:83686011-83686030 None:intergenic 35.0%
ATGTTAAAGTCTTCTGCGAA+TGG + chr4_1:83686012-83686031 None:intergenic 35.0%
! TCTCCAATCAACAGTCTTAT+TGG - chr4_1:83686099-83686118 Msa0579000:intron 35.0%
TTTGACTACAGGGACTATAA+TGG - chr4_1:83686155-83686174 Msa0579000:intron 35.0%
! ATCATTATACTCAAGGGCAT+AGG + chr4_1:83686181-83686200 None:intergenic 35.0%
TTGTTACGAGATCAAGTTCA+AGG + chr4_1:83686440-83686459 None:intergenic 35.0%
TGCATAATCCATAAGAAGGT+TGG + chr4_1:83686694-83686713 None:intergenic 35.0%
!! TTGGCTGTATTTTAGATTCG+GGG - chr4_1:83686844-83686863 Msa0579000:intron 35.0%
! CTTTTCTTTTATTGGCACAG+TGG + chr4_1:83686928-83686947 None:intergenic 35.0%
AATTCACAAGGCCTTAATGA+CGG + chr4_1:83687026-83687045 None:intergenic 35.0%
ATGAACTGGTGTTCAACATT+TGG + chr4_1:83687077-83687096 None:intergenic 35.0%
!! CAAAACTTGTTGGTATGAAC+TGG + chr4_1:83687091-83687110 None:intergenic 35.0%
! TTCATACCAACAAGTTTTGC+AGG - chr4_1:83687092-83687111 Msa0579000:intron 35.0%
! GATTTTCCTGCAAAACTTGT+TGG + chr4_1:83687101-83687120 None:intergenic 35.0%
! AAGTTTTGCAGGAAAATCTC+CGG - chr4_1:83687103-83687122 Msa0579000:intron 35.0%
TGAATTCCAAGTCTTCTTTG+AGG + chr4_1:83687142-83687161 None:intergenic 35.0%
CATTGAAGAATTAAAGCAGC+AGG - chr4_1:83687267-83687286 Msa0579000:CDS 35.0%
TTGAAGAATTAAAGCAGCAG+GGG - chr4_1:83687269-83687288 Msa0579000:CDS 35.0%
TGCAGCATATAAACTCATTG+AGG - chr4_1:83687311-83687330 Msa0579000:CDS 35.0%
GAACACCTACTGTAAGTTAA+AGG - chr4_1:83687598-83687617 Msa0579000:CDS 35.0%
CTGTTGAGCTTCAATCTATT+CGG - chr4_1:83687637-83687656 Msa0579000:CDS 35.0%
AGCTTCAATCTATTCGGTAT+GGG - chr4_1:83687643-83687662 Msa0579000:CDS 35.0%
CCATTCTGGATCAACTCAAT+CGG - chr4_1:83683453-83683472 Msa0579000:three_prime_UTR 40.0%
GACCTGGAAAGAAACTACTA+TGG - chr4_1:83683490-83683509 Msa0579000:three_prime_UTR 40.0%
GACCATAGTAGTTTCTTTCC+AGG + chr4_1:83683495-83683514 None:intergenic 40.0%
! CACATGCAAACTTTTGCAGT+TGG - chr4_1:83683535-83683554 Msa0579000:three_prime_UTR 40.0%
CAATGTAGGCCAAGAAAAGT+AGG + chr4_1:83683587-83683606 None:intergenic 40.0%
TCATTCCAGCGATTCAATGT+AGG + chr4_1:83683601-83683620 None:intergenic 40.0%
! GAAGACAGGGCTAACTATTT+TGG - chr4_1:83683628-83683647 Msa0579000:three_prime_UTR 40.0%
GGAGTTCTACCTGAAACTTT+GGG - chr4_1:83683664-83683683 Msa0579000:three_prime_UTR 40.0%
GCAACAAAGACAAGAATAGC+TGG + chr4_1:83683829-83683848 None:intergenic 40.0%
TTGTTGCGCATAAAGTTCAC+AGG - chr4_1:83683842-83683861 Msa0579000:CDS 40.0%
CTATGTTGCAGGTTTCTACA+TGG - chr4_1:83683930-83683949 Msa0579000:CDS 40.0%
!! AGGTTTCTACATGGCTTTAG+TGG - chr4_1:83683939-83683958 Msa0579000:CDS 40.0%
ATACCATAAAAAGGCTGGCA+TGG + chr4_1:83684159-83684178 None:intergenic 40.0%
! TGTTCTTTAGGAGTTTGTGC+CGG + chr4_1:83684299-83684318 None:intergenic 40.0%
!! TTATATACGGAGCTTGCTGA+TGG - chr4_1:83684320-83684339 Msa0579000:intron 40.0%
GTTGCAAGTCAAGAGACATA+TGG - chr4_1:83684477-83684496 Msa0579000:intron 40.0%
TCAAGAGACATATGGAACCT+TGG - chr4_1:83684485-83684504 Msa0579000:intron 40.0%
CAAGAGACATATGGAACCTT+GGG - chr4_1:83684486-83684505 Msa0579000:intron 40.0%
CAACTTCTCGATTTCCTGTT+CGG + chr4_1:83684527-83684546 None:intergenic 40.0%
! TCGACATGTAGCTGTTGATT+TGG - chr4_1:83684560-83684579 Msa0579000:intron 40.0%
! CTTTGGTATGGCATTTTTGC+TGG - chr4_1:83684684-83684703 Msa0579000:CDS 40.0%
! ATTTTTGCTGGAACAAACCC+AGG - chr4_1:83684696-83684715 Msa0579000:CDS 40.0%
GCTTCAACATGGTAACAAAG+AGG + chr4_1:83684829-83684848 None:intergenic 40.0%
GAGATAATTCAAGACGCTCT+AGG + chr4_1:83685043-83685062 None:intergenic 40.0%
! ATCCCAAAAGCTAGCTTATG+GGG - chr4_1:83685226-83685245 Msa0579000:intron 40.0%
ACAACCGTTGGATCTATACA+TGG + chr4_1:83685367-83685386 None:intergenic 40.0%
! TATAGTTTGCGAGTTTCCTG+AGG - chr4_1:83685838-83685857 Msa0579000:intron 40.0%
GAAACATTTGTTCGAGCTGA+TGG - chr4_1:83685976-83685995 Msa0579000:intron 40.0%
AACATTTGTTCGAGCTGATG+GGG - chr4_1:83685978-83685997 Msa0579000:intron 40.0%
! ATAAGAGGTGTGGGTGATAT+TGG - chr4_1:83686051-83686070 Msa0579000:intron 40.0%
TTGGAGACTGCAAATCTATG+CGG + chr4_1:83686086-83686105 None:intergenic 40.0%
CTGCCAATAAGACTGTTGAT+TGG + chr4_1:83686105-83686124 None:intergenic 40.0%
!! CAATCAACAGTCTTATTGGC+AGG - chr4_1:83686103-83686122 Msa0579000:intron 40.0%
!! AGAAGTTCTGGTTTGACTAC+AGG - chr4_1:83686144-83686163 Msa0579000:intron 40.0%
!! GAAGTTCTGGTTTGACTACA+GGG - chr4_1:83686145-83686164 Msa0579000:intron 40.0%
!!! CTCACTGATTTTCTTGTCGT+TGG - chr4_1:83686219-83686238 Msa0579000:intron 40.0%
TCTGACCAGTCAAGAGAATA+AGG + chr4_1:83686287-83686306 None:intergenic 40.0%
! TTCTCTTGACTGGTCAGAAT+AGG - chr4_1:83686289-83686308 Msa0579000:intron 40.0%
! TCTCTTGACTGGTCAGAATA+GGG - chr4_1:83686290-83686309 Msa0579000:intron 40.0%
! GGTCGTTTGAAACTAAGAGT+TGG - chr4_1:83686360-83686379 Msa0579000:intron 40.0%
! ACAACAAATGAAGCACTCCA+AGG - chr4_1:83686456-83686475 Msa0579000:CDS 40.0%
TCCTGAGACTGAGATGAAAA+CGG + chr4_1:83686665-83686684 None:intergenic 40.0%
GAGTAGAACCAACCTTCTTA+TGG - chr4_1:83686683-83686702 Msa0579000:intron 40.0%
AGAAAGGAAAAGTCAGCTCT+AGG + chr4_1:83686824-83686843 None:intergenic 40.0%
!! GAGCTGACTTTTCCTTTCTT+TGG - chr4_1:83686825-83686844 Msa0579000:CDS 40.0%
! CAAATGAATGGTTCTACTGC+TGG - chr4_1:83686873-83686892 Msa0579000:intron 40.0%
! AATGGTTCTACTGCTGGAAT+TGG - chr4_1:83686879-83686898 Msa0579000:intron 40.0%
ATCGTAGATGGTTCTTCAAC+TGG + chr4_1:83686996-83687015 None:intergenic 40.0%
CGATAGTCAAACCGTCATTA+AGG - chr4_1:83687012-83687031 Msa0579000:intron 40.0%
! TTGAGGAAGCTTTGATGAAC+CGG + chr4_1:83687125-83687144 None:intergenic 40.0%
AAGCTTCCTCAAAGAAGACT+TGG - chr4_1:83687133-83687152 Msa0579000:intron 40.0%
! TTCAGGTTCTCCTAAATGCA+AGG + chr4_1:83687213-83687232 None:intergenic 40.0%
! TGTTTTCTTCTCTTCGCTTC+AGG + chr4_1:83687230-83687249 None:intergenic 40.0%
!! TCGTCGCTTTAGAAAAGCAA+AGG - chr4_1:83687358-83687377 Msa0579000:CDS 40.0%
AAGCAAAGGCCTTTAGTATG+TGG - chr4_1:83687372-83687391 Msa0579000:CDS 40.0%
CGAATAGATTGAAGCTCAAC+AGG + chr4_1:83687639-83687658 None:intergenic 40.0%
GAGCTTCAATCTATTCGGTA+TGG - chr4_1:83687642-83687661 Msa0579000:CDS 40.0%
!! CCGATTGAGTTGATCCAGAA+TGG + chr4_1:83683456-83683475 None:intergenic 45.0%
TTCTGGATCAACTCAATCGG+AGG - chr4_1:83683456-83683475 Msa0579000:three_prime_UTR 45.0%
ATCAACTCAATCGGAGGAGT+CGG - chr4_1:83683462-83683481 Msa0579000:three_prime_UTR 45.0%
ATGTGTAAAGGGCTGGATGA+AGG + chr4_1:83683520-83683539 None:intergenic 45.0%
AGTTTGCATGTGTAAAGGGC+TGG + chr4_1:83683527-83683546 None:intergenic 45.0%
!! GCAATGCTGCCTACTTTTCT+TGG - chr4_1:83683575-83683594 Msa0579000:three_prime_UTR 45.0%
GGGAGTTCTACCTGAAACTT+TGG - chr4_1:83683663-83683682 Msa0579000:three_prime_UTR 45.0%
!! TTTAGTCTTGGCACTGCGAT+TGG - chr4_1:83683769-83683788 Msa0579000:three_prime_UTR 45.0%
TTGGCACTGCGATTGGATTT+CGG - chr4_1:83683776-83683795 Msa0579000:three_prime_UTR 45.0%
ATTGGATTTCGGATCAGAGG+AGG - chr4_1:83683787-83683806 Msa0579000:three_prime_UTR 45.0%
CGCATAAAGTTCACAGGCAA+TGG - chr4_1:83683848-83683867 Msa0579000:CDS 45.0%
ACCAAAATTCCCCACCTCAA+GGG + chr4_1:83683902-83683921 None:intergenic 45.0%
AACCAAAATTCCCCACCTCA+AGG + chr4_1:83683903-83683922 None:intergenic 45.0%
!!! GTGGGGAATTTTGGTTCTTC+TGG - chr4_1:83683907-83683926 Msa0579000:CDS 45.0%
! GAACCATGCCAGCCTTTTTA+TGG - chr4_1:83684153-83684172 Msa0579000:CDS 45.0%
ATTTCTTGTAAACAGGGGCC+AGG - chr4_1:83684224-83684243 Msa0579000:intron 45.0%
!! CTCTTGACTTGCAACCTTCA+AGG + chr4_1:83684472-83684491 None:intergenic 45.0%
GCTTCTAACAATAGCACCCA+AGG + chr4_1:83684505-83684524 None:intergenic 45.0%
GCTATTGTTAGAAGCCGAAC+AGG - chr4_1:83684510-83684529 Msa0579000:intron 45.0%
CGAACAGGAAATCGAGAAGT+TGG - chr4_1:83684525-83684544 Msa0579000:intron 45.0%
TATACACCAGGTCCAAGACT+GGG + chr4_1:83684621-83684640 None:intergenic 45.0%
ATATACACCAGGTCCAAGAC+TGG + chr4_1:83684622-83684641 None:intergenic 45.0%
CTTGGACCTGGTGTATATCT+TGG - chr4_1:83684624-83684643 Msa0579000:CDS 45.0%
ACTGCACCAAGATATACACC+AGG + chr4_1:83684633-83684652 None:intergenic 45.0%
! TGGTGTATATCTTGGTGCAG+TGG - chr4_1:83684632-83684651 Msa0579000:CDS 45.0%
!! AATGGACTGGTCATAGAGTC+TGG - chr4_1:83684783-83684802 Msa0579000:CDS 45.0%
AGAGTCTGGATGAGTCATAG+AGG - chr4_1:83684797-83684816 Msa0579000:CDS 45.0%
!!! CACCCCATAAGCTAGCTTTT+GGG + chr4_1:83685231-83685250 None:intergenic 45.0%
!!! TCACCCCATAAGCTAGCTTT+TGG + chr4_1:83685232-83685251 None:intergenic 45.0%
GGCAGGCAAGTGATTAAAGT+TGG - chr4_1:83686120-83686139 Msa0579000:intron 45.0%
CTTCAAGGTCAAACGTTTGC+TGG + chr4_1:83686251-83686270 None:intergenic 45.0%
CAGCAAACGTTTGACCTTGA+AGG - chr4_1:83686249-83686268 Msa0579000:intron 45.0%
TTTGACCTTGAAGGCGATAG+TGG - chr4_1:83686258-83686277 Msa0579000:intron 45.0%
!! GGAAGCCTTATTCTCTTGAC+TGG - chr4_1:83686279-83686298 Msa0579000:intron 45.0%
ACCACTTGTCCAATTCTCAG+GGG + chr4_1:83686391-83686410 None:intergenic 45.0%
CACCACTTGTCCAATTCTCA+GGG + chr4_1:83686392-83686411 None:intergenic 45.0%
ACACCACTTGTCCAATTCTC+AGG + chr4_1:83686393-83686412 None:intergenic 45.0%
! TCCGTTTTCATCTCAGTCTC+AGG - chr4_1:83686661-83686680 Msa0579000:intron 45.0%
!! GCTGGAATTGGTTCTACAGT+TGG - chr4_1:83686891-83686910 Msa0579000:intron 45.0%
GACGGTTTGACTATCGTAGA+TGG + chr4_1:83687008-83687027 None:intergenic 45.0%
GGATTGAGAGCTCACCATTC+TGG - chr4_1:83683439-83683458 Msa0579000:three_prime_UTR 50.0%
CTTGGCCTACATTGAATCGC+TGG - chr4_1:83683593-83683612 Msa0579000:three_prime_UTR 50.0%
GAATGACGCAGCAGAAGACA+GGG - chr4_1:83683615-83683634 Msa0579000:three_prime_UTR 50.0%
GGCAATCGACCCAAAGTTTC+AGG + chr4_1:83683676-83683695 None:intergenic 50.0%
GCGATTGGATTTCGGATCAG+AGG - chr4_1:83683784-83683803 Msa0579000:three_prime_UTR 50.0%
!! CAGCAGGTAGGCATTGAACA+TGG + chr4_1:83683879-83683898 None:intergenic 50.0%
! GGTTCTTCTGGCTATGTTGC+AGG - chr4_1:83683919-83683938 Msa0579000:CDS 50.0%
AGGCTGGCATGGTTCCTTTA+TGG + chr4_1:83684148-83684167 None:intergenic 50.0%
TTGGTGCGACGTAGATGTTG+TGG - chr4_1:83684253-83684272 Msa0579000:intron 50.0%
!! GGAGCTTGCTGATGGCTTAA+GGG - chr4_1:83684328-83684347 Msa0579000:intron 50.0%
!! GAGCTTGCTGATGGCTTAAG+GGG - chr4_1:83684329-83684348 Msa0579000:intron 50.0%
CAAGAGATGATCCTTGTCCG+AGG + chr4_1:83685261-83685280 None:intergenic 50.0%
TTGGATCACCGCATGAGAGA+TGG + chr4_1:83685299-83685318 None:intergenic 50.0%
TCTCTCATGCGGTGATCCAA+TGG - chr4_1:83685299-83685318 Msa0579000:intron 50.0%
GACAGATCGCACGAGAAGAT+TGG - chr4_1:83685398-83685417 Msa0579000:intron 50.0%
! GCACGAGAAGATTGGCTGAA+GGG - chr4_1:83685406-83685425 Msa0579000:intron 50.0%
! CACGAGAAGATTGGCTGAAG+GGG - chr4_1:83685407-83685426 Msa0579000:intron 50.0%
ATCTTGGACATGAGGGACTG+TGG + chr4_1:83685502-83685521 None:intergenic 50.0%
ATCAGGCCACAGCAGATGTT+CGG + chr4_1:83685553-83685572 None:intergenic 50.0%
GAGACTGCAAATCTATGCGG+TGG + chr4_1:83686083-83686102 None:intergenic 50.0%
TTGTCCAATTCTCAGGGGGT+TGG + chr4_1:83686386-83686405 None:intergenic 50.0%
CCACTTGTCCAATTCTCAGG+GGG + chr4_1:83686390-83686409 None:intergenic 50.0%
!! TGGACAAGTGGTGTTGACCT+TGG - chr4_1:83686399-83686418 Msa0579000:CDS 50.0%
!! CAAGTGGTGTTGACCTTGGA+CGG - chr4_1:83686403-83686422 Msa0579000:CDS 50.0%
TCGGGGCAAGAGCAAATGAA+TGG - chr4_1:83686861-83686880 Msa0579000:intron 50.0%
GGAATGACGCAGCAGAAGAC+AGG - chr4_1:83683614-83683633 Msa0579000:three_prime_UTR 55.0%
ACTTTGGGTCGATTGCCGTC+AGG - chr4_1:83683679-83683698 Msa0579000:three_prime_UTR 55.0%
GTAGTAGCCTGCTGTCCTGA+CGG + chr4_1:83683697-83683716 None:intergenic 55.0%
! GCCCTTGAGGTGGGGAATTT+TGG - chr4_1:83683898-83683917 Msa0579000:CDS 55.0%
TCTTGTAAACAGGGGCCAGG+AGG - chr4_1:83684227-83684246 Msa0579000:intron 55.0%
!! CGGAGCTTGCTGATGGCTTA+AGG - chr4_1:83684327-83684346 Msa0579000:intron 55.0%
AGGGGAAGCGATTCATGCGT+TGG - chr4_1:83684347-83684366 Msa0579000:intron 55.0%
!! AGCGATTCATGCGTTGGCTC+TGG - chr4_1:83684353-83684372 Msa0579000:intron 55.0%
!! ATGCGTTGGCTCTGGTTCTC+AGG - chr4_1:83684361-83684380 Msa0579000:intron 55.0%
CATCCTTTGCCACCCAGTCT+TGG - chr4_1:83684606-83684625 Msa0579000:intron 55.0%
! TTATGGGGTGAGCGTTGCCT+CGG - chr4_1:83685241-83685260 Msa0579000:intron 55.0%
CTGTGCTGCCATCTCTCATG+CGG - chr4_1:83685288-83685307 Msa0579000:intron 55.0%
CCTGCGGTAGTTACAACCGT+TGG + chr4_1:83685379-83685398 None:intergenic 55.0%
CCAACGGTTGTAACTACCGC+AGG - chr4_1:83685376-83685395 Msa0579000:intron 55.0%
TTCTCGTGCGATCTGTCCTG+CGG + chr4_1:83685395-83685414 None:intergenic 55.0%
! CGCACGAGAAGATTGGCTGA+AGG - chr4_1:83685405-83685424 Msa0579000:intron 55.0%
AGTGGGAGGCAACGCAGATT+CGG + chr4_1:83685435-83685454 None:intergenic 55.0%
GGCTTCCACTATCGCCTTCA+AGG + chr4_1:83686266-83686285 None:intergenic 55.0%
CAGATAATGCCAACAGGGCG+GGG + chr4_1:83686321-83686340 None:intergenic 55.0%
CCAGATAATGCCAACAGGGC+GGG + chr4_1:83686322-83686341 None:intergenic 55.0%
CCCAGATAATGCCAACAGGG+CGG + chr4_1:83686323-83686342 None:intergenic 55.0%
CCGCCCTGTTGGCATTATCT+GGG - chr4_1:83686320-83686339 Msa0579000:intron 55.0%
CGCCCTGTTGGCATTATCTG+GGG - chr4_1:83686321-83686340 Msa0579000:intron 55.0%
CGCCCCAGATAATGCCAACA+GGG + chr4_1:83686326-83686345 None:intergenic 55.0%
CCTGTTGGCATTATCTGGGG+CGG - chr4_1:83686324-83686343 Msa0579000:intron 55.0%
! CTGTTGGCATTATCTGGGGC+GGG - chr4_1:83686325-83686344 Msa0579000:intron 55.0%
TTGGCCAACCCCCTGAGAAT+TGG - chr4_1:83686379-83686398 Msa0579000:intron 55.0%
CCCCCTGAGAATTGGACAAG+TGG - chr4_1:83686387-83686406 Msa0579000:CDS 55.0%
GGAGATCAAGAAGCCGTCCA+AGG + chr4_1:83686419-83686438 None:intergenic 55.0%
! TCAATCGGAGGAGTCGGCTC+TGG - chr4_1:83683468-83683487 Msa0579000:three_prime_UTR 60.0%
TCGATTGCCGTCAGGACAGC+AGG - chr4_1:83683687-83683706 Msa0579000:three_prime_UTR 60.0%
ATGCCTACCTGCTGCCCTTG+AGG - chr4_1:83683885-83683904 Msa0579000:CDS 60.0%
CTACCTGCTGCCCTTGAGGT+GGG - chr4_1:83683889-83683908 Msa0579000:CDS 60.0%
TACCTGCTGCCCTTGAGGTG+GGG - chr4_1:83683890-83683909 Msa0579000:CDS 60.0%
!! AACAGGGGCCAGGAGGTGTT+TGG - chr4_1:83684234-83684253 Msa0579000:intron 60.0%
ACGTCGCACCAAACACCTCC+TGG + chr4_1:83684245-83684264 None:intergenic 60.0%
GGTCCAAGACTGGGTGGCAA+AGG + chr4_1:83684612-83684631 None:intergenic 60.0%
TTGCCACCCAGTCTTGGACC+TGG - chr4_1:83684612-83684631 Msa0579000:intron 60.0%
ACACCAGGTCCAAGACTGGG+TGG + chr4_1:83684618-83684637 None:intergenic 60.0%
GCAGGACCGAACATCTGCTG+TGG - chr4_1:83685544-83685563 Msa0579000:intron 60.0%
CCCGCCCTGTTGGCATTATC+TGG - chr4_1:83686319-83686338 Msa0579000:intron 60.0%
CCGCCCCAGATAATGCCAAC+AGG + chr4_1:83686327-83686346 None:intergenic 60.0%
CCACCTCAAGGGCAGCAGGT+AGG + chr4_1:83683891-83683910 None:intergenic 65.0%
CCTACCTGCTGCCCTTGAGG+TGG - chr4_1:83683888-83683907 Msa0579000:CDS 65.0%
TTCCCCACCTCAAGGGCAGC+AGG + chr4_1:83683895-83683914 None:intergenic 65.0%
! GGTGAGCGTTGCCTCGGACA+AGG - chr4_1:83685247-83685266 Msa0579000:intron 65.0%
TGGGGCGGGACAGCTAATCG+AGG - chr4_1:83686339-83686358 Msa0579000:intron 65.0%
!! GGAGGAGTCGGCTCTGGACC+TGG - chr4_1:83683474-83683493 Msa0579000:three_prime_UTR 70.0%
AGGGAGAAGCCCCGCCCTGT+TGG - chr4_1:83686309-83686328 Msa0579000:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83683421 83687680 83683421 ID=Msa0579000;Name=Msa0579000
chr4_1 mRNA 83683421 83687680 83683421 ID=Msa0579000-mRNA-1;Parent=Msa0579000;Name=Msa0579000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.8|1|1|1|5|400|614
chr4_1 exon 83683421 83684242 83683421 ID=Msa0579000-mRNA-1:exon:30594;Parent=Msa0579000-mRNA-1
chr4_1 exon 83684624 83685124 83684624 ID=Msa0579000-mRNA-1:exon:30593;Parent=Msa0579000-mRNA-1
chr4_1 exon 83686384 83686624 83686384 ID=Msa0579000-mRNA-1:exon:30592;Parent=Msa0579000-mRNA-1
chr4_1 exon 83686719 83686862 83686719 ID=Msa0579000-mRNA-1:exon:30591;Parent=Msa0579000-mRNA-1
chr4_1 exon 83687144 83687680 83687144 ID=Msa0579000-mRNA-1:exon:30590;Parent=Msa0579000-mRNA-1
chr4_1 CDS 83687144 83687680 83687144 ID=Msa0579000-mRNA-1:cds;Parent=Msa0579000-mRNA-1
chr4_1 CDS 83686719 83686862 83686719 ID=Msa0579000-mRNA-1:cds;Parent=Msa0579000-mRNA-1
chr4_1 CDS 83686384 83686624 83686384 ID=Msa0579000-mRNA-1:cds;Parent=Msa0579000-mRNA-1
chr4_1 CDS 83684624 83685124 83684624 ID=Msa0579000-mRNA-1:cds;Parent=Msa0579000-mRNA-1
chr4_1 CDS 83683821 83684242 83683821 ID=Msa0579000-mRNA-1:cds;Parent=Msa0579000-mRNA-1
chr4_1 three_prime_UTR 83683421 83683820 83683421 ID=Msa0579000-mRNA-1:three_prime_utr;Parent=Msa0579000-mRNA-1
Gene Sequence

>Msa0579000

ATGAATCGGAATCGATTGGGATTGAGAGCTCACCATTCTGGATCAACTCAATCGGAGGAGTCGGCTCTGGACCTGGAAAGAAACTACTATGGTCATCCTTCATCCAGCCCTTTACACATGCAAACTTTTGCAGTTGGTGTTCAACATTCTGAGAGCAATGCTGCCTACTTTTCTTGGCCTACATTGAATCGCTGGAATGACGCAGCAGAAGACAGGGCTAACTATTTTGGTAATCTTCAAAAGGGAGTTCTACCTGAAACTTTGGGTCGATTGCCGTCAGGACAGCAGGCTACTACCTTGCTTGAACTTATGACTATTAGGGCATTTCATAGTAAGATTTTACGGCGATTTAGTCTTGGCACTGCGATTGGATTTCGGATCAGAGGAGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTTGTTGCGCATAAAGTTCACAGGCAATGGCTCAACCATGTTCAATGCCTACCTGCTGCCCTTGAGGTGGGGAATTTTGGTTCTTCTGGCTATGTTGCAGGTTTCTACATGGCTTTAGGGCCAGGAGGTGTTTGGTGCGACGTAGATGTTGTGGAGTTTTCTTATTATGGTGCACCGGCACAAACTCCTAAAGAACAATTATATACGGAGCTTGCTGATGGCTTAAGGGGAAGCGATTCATGCGTTGGCTCTGGTTCTCAGGTTGCAAGTCAAGAGACATATGGAACCTTGGGTGCTATTGTTAGAAGCCGAACAGGAAATCGAGAAGTTGGTTTTCTAACAAATCGACATGTAGCTGTTGATTTGGACTATCCGAACCAAAAGATGTTTCATCCTTTGCCACCCAGTCTTGGACCTGGTGTATATCTTGGTGCAGTGGAGAGAGCAACATCGTTTATTACTGATGATCTTTGGTATGGCATTTTTGCTGGAACAAACCCAGAAACATTTGTTCGAGCTGATGGGGCATTCATCCCATTCGCAGAAGACTTTAACATGAACAATGTAATTACATCTATAAGAGGTGTGGGTGATATTGGTGAAGTCCACCGCATAGATTTGCAGTCTCCAATCAACAGTCTTATTGGCAGGCAAGTGATTAAAGTTGGAAGAAGTTCTGGTTTGACTACAGGGACTATAATGGCCTATGCCCTTGAGTATAATGATGAGAAAGGTATTTGTTTTCTCACTGATTTTCTTGTCGTTGGTGAGAACCAGCAAACGTTTGACCTTGAAGGCGATAGTGGAAGCCTTATTCTCTTGACTGGTCAGAATAGGGAGAAGCCCCGCCCTGTTGGCATTATCTGGGGCGGGACAGCTAATCGAGGTCGTTTGAAACTAAGAGTTGGCCAACCCCCTGAGAATTGGACAAGTGGTGTTGACCTTGGACGGCTTCTTGATCTCCTTGAACTTGATCTCGTAACAACAAATGAAGCACTCCAAGATTCGGGGCAAGAGCAAATGAATGGTTCTACTGCTGGAATTGGTTCTACAGTTGGAGAATCATCTCCCACTGTGCCAATAAAAGAAAAGCTTGAAGAGAGCTTTGAGCCTTTTTGTTTGAATATGGAACACGTTCCAGTTGAAGAACCATCTACGATAGTCAAACCGTCATTAAGGCCTTGTGAATTTCATATCAGAAATGAGATTGAAACAGTTCCAAATGTTGAACACCAGTTCATACCAACAAGTTTTGCAGGAAAATCTCCGGTTCATCAAAGCTTCCTCAAAGAAGACTTGGAATTCAAAAGTCTATCTGAACTTAGGAATGAACCTGATGAAGATAATTTTGTTTCCTTGCATTTAGGAGAACCTGAAGCGAAGAGAAGAAAACATTCAAATTCTTCCTTATCATTGAAGAATTAA
Protein sequence

>Msa0579000

MNRNRLGLRAHHSGSTQSEESALDLERNYYGHPSSSPLHMQTFAVGVQHSESNAAYFSWPTLNRWNDAAEDRANYFGNLQKGVLPETLGRLPSGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRGGVLTDIPAILVFVAHKVHRQWLNHVQCLPAALEVGNFGSSGYVAGFYMALGPGGVWCDVDVVEFSYYGAPAQTPKEQLYTELADGLRGSDSCVGSGSQVASQETYGTLGAIVRSRTGNREVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNMNNVITSIRGVGDIGEVHRIDLQSPINSLIGRQVIKVGRSSGLTTGTIMAYALEYNDEKGICFLTDFLVVGENQQTFDLEGDSGSLILLTGQNREKPRPVGIIWGGTANRGRLKLRVGQPPENWTSGVDLGRLLDLLELDLVTTNEALQDSGQEQMNGSTAGIGSTVGESSPTVPIKEKLEESFEPFCLNMEHVPVEEPSTIVKPSLRPCEFHIRNEIETVPNVEHQFIPTSFAGKSPVHQSFLKEDLEFKSLSELRNEPDEDNFVSLHLGEPEAKRRKHSNSSLSLKN*