AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610620 MtrunA17_Chr4g0043641 95.928 614 8 1 1 614 1 597 0.0 1205
Msa0610620 MtrunA17_Chr2g0312121 69.579 618 159 8 1 609 1 598 0.0 815
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610620 AT5G45030.1 68.971 622 155 12 1 608 1 598 0.0 805
Msa0610620 AT5G45030.2 68.971 622 155 12 1 608 1 598 0.0 805
Msa0610620 AT2G35155.2 68.669 616 142 9 1 604 1 577 0.0 770
Msa0610620 AT2G35155.1 68.669 616 142 9 1 604 1 577 0.0 770
Msa0610620 AT3G12950.1 60.997 582 158 16 48 604 9 546 0.0 657

Find 176 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGCCCTGTTGGCATTATC+TGG 0.105074 4_2:-58444666 Msa0610620:CDS
GCCCTTGAGGTGGGGAATTT+TGG 0.138372 4_2:-58447087 Msa0610620:CDS
TGCTTGAACTTATGACTATT+AGG 0.184449 4_2:-58447266 Msa0610620:CDS
GGTTCTTCTGGCTATGTTGC+AGG 0.232873 4_2:-58447066 Msa0610620:CDS
TCTCCAATCAACAGTCTTAT+TGG 0.236068 4_2:-58444886 Msa0610620:CDS
GAAGACAGGGCTAACTATTT+TGG 0.246035 4_2:-58447357 Msa0610620:CDS
GGCAATCGACCCAAAGTTTC+AGG 0.261465 4_2:+58447312 None:intergenic
ATTAAAGTTGGAAGAAGTTC+TGG 0.278329 4_2:-58444853 Msa0610620:CDS
CGTTTATTACTGATGATCTT+TGG 0.282970 4_2:-58446318 Msa0610620:CDS
GCTTGAACTTATGACTATTA+GGG 0.290194 4_2:-58447265 Msa0610620:CDS
GGATTGAGAGCTCACCATTC+TGG 0.297569 4_2:-58447546 Msa0610620:CDS
GGGAGTTCTACCTGAAACTT+TGG 0.310248 4_2:-58447322 Msa0610620:CDS
CTTCAAGGTCAAACGTTTGC+TGG 0.313305 4_2:+58444737 None:intergenic
GCAAAGGATGAAACATCTTT+TGG 0.315003 4_2:+58446392 None:intergenic
TCTGACCAGTCAAGAGAATA+AGG 0.317561 4_2:+58444701 None:intergenic
TCCGTATATAATTGTTCTTT+AGG 0.319492 4_2:+58446677 None:intergenic
TCGACATGTAGCTGTTGATT+TGG 0.329058 4_2:-58446425 Msa0610620:CDS
TGTTCCATATTCAAACAAAA+AGG 0.337063 4_2:+58444019 None:intergenic
GAACACCTACTGTAAGTTAA+AGG 0.345534 4_2:-58443387 Msa0610620:three_prime_UTR
CGATAGTCAAACCGTCATTA+AGG 0.347794 4_2:-58443973 Msa0610620:CDS
CATCCTTTGCCACCCAGTCT+TGG 0.348079 4_2:-58446379 Msa0610620:CDS
GACCATAGTAGTTTCTTTCC+AGG 0.352728 4_2:+58447493 None:intergenic
AAATAAACAAGGTTCACTTC+TGG 0.354735 4_2:-58443575 Msa0610620:three_prime_UTR
TTGGCACTGCGATTGGATTT+CGG 0.357135 4_2:-58447209 Msa0610620:CDS
CGGAGCTTGCTGATGGCTTA+AGG 0.360883 4_2:-58446658 Msa0610620:CDS
CTGTTGAGCTTCAATCTATT+CGG 0.368305 4_2:-58443348 Msa0610620:three_prime_UTR
CAACTTCTCGATTTCCTGTT+CGG 0.374200 4_2:+58446461 None:intergenic
CCGCCCTGTTGGCATTATCT+GGG 0.377241 4_2:-58444665 Msa0610620:CDS
TCTCTTGACTGGTCAGAATA+GGG 0.378681 4_2:-58444695 Msa0610620:CDS
ACACCACTTGTCCAATTCTC+AGG 0.389026 4_2:+58444595 None:intergenic
TTGAGGAAGCTTTGATGAAC+CGG 0.389652 4_2:+58443863 None:intergenic
AATGGTTCTACTGCTGGAAT+TGG 0.393362 4_2:-58444106 Msa0610620:CDS
ATGCGTTGGCTCTGGTTCTC+AGG 0.395107 4_2:-58446624 Msa0610620:intron
CGAATAGATTGAAGCTCAAC+AGG 0.395263 4_2:+58443349 None:intergenic
ATCGTAGATGGTTCTTCAAC+TGG 0.397446 4_2:+58443992 None:intergenic
GAAACATTTGTTCGAGCTGA+TGG 0.400003 4_2:-58445009 Msa0610620:CDS
CTATGTTGCAGGTTTCTACA+TGG 0.403417 4_2:-58447055 Msa0610620:CDS
TCCTAAAGAACAATTATATA+CGG 0.407068 4_2:-58446678 Msa0610620:CDS
ATGAACTGGTGTTCAACATT+TGG 0.409902 4_2:+58443911 None:intergenic
TTCTCTTGACTGGTCAGAAT+AGG 0.410261 4_2:-58444696 Msa0610620:CDS
ATAAGAGGTGTGGGTGATAT+TGG 0.412482 4_2:-58444934 Msa0610620:CDS
GGCTTCCACTATCGCCTTCA+AGG 0.412585 4_2:+58444722 None:intergenic
GAAACAAAATTATCTTCATC+AGG 0.419421 4_2:+58443797 None:intergenic
GACGGTTTGACTATCGTAGA+TGG 0.421940 4_2:+58443980 None:intergenic
GGAGCTTGCTGATGGCTTAA+GGG 0.422751 4_2:-58446657 Msa0610620:CDS
CAGCAAACGTTTGACCTTGA+AGG 0.425621 4_2:-58444736 Msa0610620:CDS
GCTTTAATTCTTCAATGATA+AGG 0.425897 4_2:+58443724 None:intergenic
GGAATGACGCAGCAGAAGAC+AGG 0.426271 4_2:-58447371 Msa0610620:CDS
TTTAGTCTTGGCACTGCGAT+TGG 0.428958 4_2:-58447216 Msa0610620:CDS
CTTGGACCTGGTGTATATCT+TGG 0.435210 4_2:-58446361 Msa0610620:CDS
CCGCCCCAGATAATGCCAAC+AGG 0.435797 4_2:+58444661 None:intergenic
CGCATAAAGTTCACAGGCAA+TGG 0.438775 4_2:-58447137 Msa0610620:CDS
TTGTTACGAGATCAAGTTCA+AGG 0.439583 4_2:+58444548 None:intergenic
AGCGATTCATGCGTTGGCTC+TGG 0.442737 4_2:-58446632 Msa0610620:CDS
TTTGACTACAGGGACTATAA+TGG 0.443768 4_2:-58444830 Msa0610620:CDS
AGAAGTTCTGGTTTGACTAC+AGG 0.444792 4_2:-58444841 Msa0610620:CDS
TTTGACCTTGAAGGCGATAG+TGG 0.446618 4_2:-58444727 Msa0610620:CDS
ATTACTGATGATCTTTGGTA+TGG 0.447995 4_2:-58446313 Msa0610620:CDS
CCAGATAATGCCAACAGGGC+GGG 0.448428 4_2:+58444666 None:intergenic
TCAATCGGAGGAGTCGGCTC+TGG 0.448629 4_2:-58447517 Msa0610620:CDS
CAAAAGTTTGCATGTGTAAA+GGG 0.448865 4_2:+58447457 None:intergenic
GAGCTTCAATCTATTCGGTA+TGG 0.454176 4_2:-58443343 Msa0610620:three_prime_UTR
CATTGAAGAATTAAAGCAGC+AGG 0.456435 4_2:-58443718 Msa0610620:exon
CTACCTGCTGCCCTTGAGGT+GGG 0.457934 4_2:-58447096 Msa0610620:CDS
TATTATAAGCACTCTTGAAA+GGG 0.460882 4_2:-58443410 Msa0610620:three_prime_UTR
TTTAAAGCTCCACATACTAA+AGG 0.462335 4_2:+58443604 None:intergenic
TTGCCACCCAGTCTTGGACC+TGG 0.464075 4_2:-58446373 Msa0610620:CDS
GGAAGCCTTATTCTCTTGAC+TGG 0.464578 4_2:-58444706 Msa0610620:CDS
GGCAGGCAAGTGATTAAAGT+TGG 0.465112 4_2:-58444865 Msa0610620:CDS
CAAATGAATGGTTCTACTGC+TGG 0.465982 4_2:-58444112 Msa0610620:CDS
GCAAAAGTTTGCATGTGTAA+AGG 0.467669 4_2:+58447456 None:intergenic
TCAAAAGTCTATCTGAACTT+AGG 0.471695 4_2:-58443826 Msa0610620:CDS
AACAGGGGCCAGGAGGTGTT+TGG 0.472625 4_2:-58446751 Msa0610620:intron
TGAATTCCAAGTCTTCTTTG+AGG 0.474327 4_2:+58443846 None:intergenic
TCGATTGCCGTCAGGACAGC+AGG 0.474763 4_2:-58447298 Msa0610620:CDS
GCTATTGTTAGAAGCCGAAC+AGG 0.476533 4_2:-58446475 Msa0610620:CDS
CTTGGCCTACATTGAATCGC+TGG 0.479956 4_2:-58447392 Msa0610620:CDS
CAAGAGACATATGGAACCTT+GGG 0.482500 4_2:-58446499 Msa0610620:CDS
TTCCCCACCTCAAGGGCAGC+AGG 0.483181 4_2:+58447093 None:intergenic
CAAAACTTGTTGGTATGAAC+TGG 0.484004 4_2:+58443897 None:intergenic
AAGCTTCCTCAAAGAAGACT+TGG 0.488186 4_2:-58443852 Msa0610620:CDS
CGAACAGGAAATCGAGAAGT+TGG 0.491001 4_2:-58446460 Msa0610620:CDS
GGAGGAGTCGGCTCTGGACC+TGG 0.491608 4_2:-58447511 Msa0610620:CDS
GCTGGAATTGGTTCTACAGT+TGG 0.492581 4_2:-58444094 Msa0610620:CDS
CCTACCTGCTGCCCTTGAGG+TGG 0.495104 4_2:-58447097 Msa0610620:CDS
CTTTCTCATCATTATACTCA+AGG 0.497193 4_2:+58444800 None:intergenic
ATATACACCAGGTCCAAGAC+TGG 0.499323 4_2:+58446366 None:intergenic
GTATTATAAGCACTCTTGAA+AGG 0.499812 4_2:-58443411 Msa0610620:three_prime_UTR
CAGATAATGCCAACAGGGCG+GGG 0.500310 4_2:+58444667 None:intergenic
CCATTCTGGATCAACTCAAT+CGG 0.500907 4_2:-58447532 Msa0610620:CDS
TGTTAAAGTCTTCTGCGAAT+GGG 0.502215 4_2:+58444977 None:intergenic
AGGAGAGCTAACAGATGAAT+CGG 0.502366 4_2:-58447578 None:intergenic
ACTTTGGGTCGATTGCCGTC+AGG 0.503578 4_2:-58447306 Msa0610620:CDS
GGAGTTCTACCTGAAACTTT+GGG 0.504265 4_2:-58447321 Msa0610620:CDS
TACCTGCTGCCCTTGAGGTG+GGG 0.504336 4_2:-58447095 Msa0610620:CDS
CAGATGAATCGGAATCGATT+GGG 0.507056 4_2:-58447567 Msa0610620:CDS
AAACATTTGTTCGAGCTGAT+GGG 0.507807 4_2:-58445008 Msa0610620:CDS
ATGTTAAAGTCTTCTGCGAA+TGG 0.508003 4_2:+58444976 None:intergenic
ACGTCGCACCAAACACCTCC+TGG 0.508347 4_2:+58446743 None:intergenic
AGCTTCAATCTATTCGGTAT+GGG 0.512168 4_2:-58443342 Msa0610620:three_prime_UTR
ATGCCTACCTGCTGCCCTTG+AGG 0.515768 4_2:-58447100 Msa0610620:CDS
CAATCAACAGTCTTATTGGC+AGG 0.517169 4_2:-58444882 Msa0610620:CDS
GACCTGGAAAGAAACTACTA+TGG 0.518176 4_2:-58447495 Msa0610620:CDS
ACAGATGAATCGGAATCGAT+TGG 0.518990 4_2:-58447568 None:intergenic
ATTTCTTGTAAACAGGGGCC+AGG 0.519655 4_2:-58446761 Msa0610620:intron
CAATGTAGGCCAAGAAAAGT+AGG 0.521406 4_2:+58447401 None:intergenic
TCAAGAGACATATGGAACCT+TGG 0.523834 4_2:-58446500 Msa0610620:CDS
CAAGTGGTGTTGACCTTGGA+CGG 0.526076 4_2:-58444582 Msa0610620:CDS
GTTGCAAGTCAAGAGACATA+TGG 0.529263 4_2:-58446508 Msa0610620:CDS
GAAGTTCTGGTTTGACTACA+GGG 0.529598 4_2:-58444840 Msa0610620:CDS
AGGGGAAGCGATTCATGCGT+TGG 0.531667 4_2:-58446638 Msa0610620:CDS
AAGCAAAGGCCTTTAGTATG+TGG 0.534975 4_2:-58443613 Msa0610620:three_prime_UTR
TTGTTGCGCATAAAGTTCAC+AGG 0.536854 4_2:-58447143 Msa0610620:CDS
CTGTTGGCATTATCTGGGGC+GGG 0.537553 4_2:-58444660 Msa0610620:CDS
AATGTAATTACATCTATAAG+AGG 0.538978 4_2:-58444949 Msa0610620:CDS
CTTGAGTATAATGATGAGAA+AGG 0.539050 4_2:-58444799 Msa0610620:CDS
GGTCCAAGACTGGGTGGCAA+AGG 0.540512 4_2:+58446376 None:intergenic
AGTTTGCATGTGTAAAGGGC+TGG 0.544378 4_2:+58447461 None:intergenic
ATCAACTCAATCGGAGGAGT+CGG 0.544805 4_2:-58447523 Msa0610620:CDS
ACCAAAATTCCCCACCTCAA+GGG 0.545097 4_2:+58447086 None:intergenic
AGGGAGAAGCCCCGCCCTGT+TGG 0.546538 4_2:-58444676 Msa0610620:CDS
TGGACAAGTGGTGTTGACCT+TGG 0.549702 4_2:-58444586 Msa0610620:CDS
AACCAAAATTCCCCACCTCA+AGG 0.551920 4_2:+58447085 None:intergenic
CTGCCAATAAGACTGTTGAT+TGG 0.554370 4_2:+58444883 None:intergenic
CCGATTGAGTTGATCCAGAA+TGG 0.554613 4_2:+58447532 None:intergenic
TTTCTCATCATTATACTCAA+GGG 0.557070 4_2:+58444801 None:intergenic
CCTGTTGGCATTATCTGGGG+CGG 0.557596 4_2:-58444661 Msa0610620:CDS
AACATTTGTTCGAGCTGATG+GGG 0.557640 4_2:-58445007 Msa0610620:CDS
CACCACTTGTCCAATTCTCA+GGG 0.562663 4_2:+58444596 None:intergenic
TCATTCCAGCGATTCAATGT+AGG 0.567273 4_2:+58447387 None:intergenic
ATTGAAGAATTAAAGCAGCA+GGG 0.568516 4_2:-58443717 Msa0610620:exon
CGCCCTGTTGGCATTATCTG+GGG 0.569716 4_2:-58444664 Msa0610620:CDS
TTATATACGGAGCTTGCTGA+TGG 0.572499 4_2:-58446665 Msa0610620:CDS
ATTACATCTATAAGAGGTGT+GGG 0.575644 4_2:-58444943 Msa0610620:CDS
GAGCTTGCTGATGGCTTAAG+GGG 0.577403 4_2:-58446656 Msa0610620:CDS
TTCAGGTTCTCCTAAATGCA+AGG 0.582236 4_2:+58443775 None:intergenic
TCGGGGCAAGAGCAAATGAA+TGG 0.582918 4_2:-58444124 Msa0610620:CDS
CCCAGATAATGCCAACAGGG+CGG 0.586699 4_2:+58444665 None:intergenic
AATTCACAAGGCCTTAATGA+CGG 0.588146 4_2:+58443962 None:intergenic
TCGTCGCTTTAGAAAAGCAA+AGG 0.589195 4_2:-58443627 Msa0610620:three_prime_UTR
ATGTGTAAAGGGCTGGATGA+AGG 0.592242 4_2:+58447468 None:intergenic
ACATTCCTTTAACTTACAGT+AGG 0.594805 4_2:+58443382 None:intergenic
GCAACAAAGACAAGAATAGC+TGG 0.595801 4_2:+58447159 None:intergenic
GCTTCTAACAATAGCACCCA+AGG 0.596747 4_2:+58446483 None:intergenic
CCACCTCAAGGGCAGCAGGT+AGG 0.597414 4_2:+58447097 None:intergenic
AATTACATCTATAAGAGGTG+TGG 0.598962 4_2:-58444944 Msa0610620:CDS
GCGATTGGATTTCGGATCAG+AGG 0.599232 4_2:-58447201 Msa0610620:CDS
CGCCCCAGATAATGCCAACA+GGG 0.599609 4_2:+58444662 None:intergenic
TGCAGCATATAAACTCATTG+AGG 0.600323 4_2:-58443674 Msa0610620:three_prime_UTR
AATAGTCATAAGTTCAAGCA+AGG 0.603800 4_2:+58447269 None:intergenic
TTGAAGAATTAAAGCAGCAG+GGG 0.608596 4_2:-58443716 Msa0610620:exon
ATTGGATTTCGGATCAGAGG+AGG 0.612176 4_2:-58447198 Msa0610620:CDS
ATTATAAGCACTCTTGAAAG+GGG 0.613073 4_2:-58443409 Msa0610620:three_prime_UTR
TATACACCAGGTCCAAGACT+GGG 0.615295 4_2:+58446367 None:intergenic
GGTCGTTTGAAACTAAGAGT+TGG 0.615590 4_2:-58444625 Msa0610620:CDS
GGAGATCAAGAAGCCGTCCA+AGG 0.617388 4_2:+58444569 None:intergenic
TGTTCTTTAGGAGTTTGTGC+CGG 0.626199 4_2:+58446689 None:intergenic
CAGCAGGTAGGCATTGAACA+TGG 0.626384 4_2:+58447109 None:intergenic
TGGTGTATATCTTGGTGCAG+TGG 0.629669 4_2:-58446353 Msa0610620:CDS
TTCTGGATCAACTCAATCGG+AGG 0.631741 4_2:-58447529 Msa0610620:CDS
GTAGTAGCCTGCTGTCCTGA+CGG 0.633757 4_2:+58447291 None:intergenic
GAGACTGCAAATCTATGCGG+TGG 0.634596 4_2:+58444905 None:intergenic
GAATGACGCAGCAGAAGACA+GGG 0.639240 4_2:-58447370 Msa0610620:CDS
ACAACAAATGAAGCACTCCA+AGG 0.643602 4_2:-58444529 Msa0610620:intron
ATCATTATACTCAAGGGCAT+AGG 0.644610 4_2:+58444807 None:intergenic
ATAATACAAAGTCTACAAAG+TGG 0.646869 4_2:+58443427 None:intergenic
CCACTTGTCCAATTCTCAGG+GGG 0.658338 4_2:+58444598 None:intergenic
TTGGTGCGACGTAGATGTTG+TGG 0.658994 4_2:-58446732 Msa0610620:CDS
TCTTGTAAACAGGGGCCAGG+AGG 0.664800 4_2:-58446758 Msa0610620:intron
AAACTGATGCTAATGTACAA+GGG 0.688415 4_2:+58443312 None:intergenic
TTTCTGATATGAAATTCACA+AGG 0.697960 4_2:+58443950 None:intergenic
ACCACTTGTCCAATTCTCAG+GGG 0.709383 4_2:+58444597 None:intergenic
ACACCAGGTCCAAGACTGGG+TGG 0.716030 4_2:+58446370 None:intergenic
ACTGCACCAAGATATACACC+AGG 0.724639 4_2:+58446355 None:intergenic
TGGGGCGGGACAGCTAATCG+AGG 0.725183 4_2:-58444646 Msa0610620:CDS
TTGGAGACTGCAAATCTATG+CGG 0.782914 4_2:+58444902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATATTTTTACAGATAAA+TGG + chr4_2:58444024-58444043 None:intergenic 15.0%
!!! TTCCTTATTTAATAAGAATT+GGG + chr4_2:58444895-58444914 None:intergenic 15.0%
!!! TAGTTATATTTTGATATTGT+TGG + chr4_2:58445648-58445667 None:intergenic 15.0%
!!! ATAGTTTTATTGAAGTTATA+GGG + chr4_2:58445713-58445732 None:intergenic 15.0%
!! GATTTATACAAGTTTATAAA+AGG - chr4_2:58446441-58446460 Msa0610620:CDS 15.0%
!! GATATAGCAATATTTATTAT+TGG + chr4_2:58446496-58446515 None:intergenic 15.0%
!! TTTATACATTGAAAGAAAAA+AGG + chr4_2:58446645-58446664 None:intergenic 15.0%
!!! TATTTTGGTAATCTTCAAAA+GGG - chr4_2:58443549-58443568 Msa0610620:three_prime_UTR 20.0%
!!! CATTTCATAGTAAGATTTTA+CGG - chr4_2:58443649-58443668 Msa0610620:three_prime_UTR 20.0%
!!! AATGGAATTTATATTGGTTA+AGG + chr4_2:58444006-58444025 None:intergenic 20.0%
!! CAGATAAATGGAATTTATAT+TGG + chr4_2:58444012-58444031 None:intergenic 20.0%
!! TGTTTACAAGAAATAAGAAA+TGG + chr4_2:58444124-58444143 None:intergenic 20.0%
!!! ATTTCTTATTTCTTGTAAAC+AGG - chr4_2:58444123-58444142 Msa0610620:CDS 20.0%
!!! TTTCTTATTTCTTGTAAACA+GGG - chr4_2:58444124-58444143 Msa0610620:CDS 20.0%
!! TCCTAAAGAACAATTATATA+CGG - chr4_2:58444213-58444232 Msa0610620:intron 20.0%
!! AAAGGTTATATACAAAAAAG+AGG + chr4_2:58444344-58444363 None:intergenic 20.0%
!! AATTTGAAAACAAATTACCT+GGG + chr4_2:58444622-58444641 None:intergenic 20.0%
!! ATAGTAATTTCTTACTGATA+TGG - chr4_2:58444800-58444819 Msa0610620:CDS 20.0%
!!! CTTCCTTATTTAATAAGAAT+TGG + chr4_2:58444896-58444915 None:intergenic 20.0%
!! AATCATATCTCTTAGAATTT+GGG - chr4_2:58445094-58445113 Msa0610620:intron 20.0%
!! CTAAAATAGTTGTTATAAGT+GGG + chr4_2:58445358-58445377 None:intergenic 20.0%
!!! CTAAAACTCAAATTCTAAAA+TGG + chr4_2:58445530-58445549 None:intergenic 20.0%
!!! CATTTTAGAATTTGAGTTTT+AGG - chr4_2:58445528-58445547 Msa0610620:intron 20.0%
!!! GATAGTTTTATTGAAGTTAT+AGG + chr4_2:58445714-58445733 None:intergenic 20.0%
!!! TTATGATTTAACTTTCTTGA+AGG - chr4_2:58445819-58445838 Msa0610620:intron 20.0%
!!! TATGATTTAACTTTCTTGAA+GGG - chr4_2:58445820-58445839 Msa0610620:intron 20.0%
!! AATGTAATTACATCTATAAG+AGG - chr4_2:58445942-58445961 Msa0610620:intron 20.0%
!! GAAATGATGTTAGAAATTAT+TGG + chr4_2:58446474-58446493 None:intergenic 20.0%
!!! ACATTAACTTTGTTTATAAC+GGG + chr4_2:58446546-58446565 None:intergenic 20.0%
!!! CACATTAACTTTGTTTATAA+CGG + chr4_2:58446547-58446566 None:intergenic 20.0%
!! AATCATTATCAATTGTTAGT+TGG - chr4_2:58446667-58446686 Msa0610620:CDS 20.0%
!! GTATTCCTCAAATAAATAAA+CGG + chr4_2:58446708-58446727 None:intergenic 20.0%
!!! TCTTCAAGCTTTTTTTTTAT+TGG + chr4_2:58446842-58446861 None:intergenic 20.0%
!! TTAAAAGCGAAAAATAAACA+AGG - chr4_2:58447305-58447324 Msa0610620:CDS 20.0%
!!! TTTTATTTTCATGTTCGATA+AGG - chr4_2:58447356-58447375 Msa0610620:CDS 20.0%
!!! CTATTTTGGTAATCTTCAAA+AGG - chr4_2:58443548-58443567 Msa0610620:three_prime_UTR 25.0%
!! TTGAATTGAAAAGTGTAATG+AGG + chr4_2:58443872-58443891 None:intergenic 25.0%
! CAACAATCTATAAAACCTAT+CGG + chr4_2:58443953-58443972 None:intergenic 25.0%
!!! GATAGGTTTTATAGATTGTT+GGG - chr4_2:58443952-58443971 Msa0610620:CDS 25.0%
!!! ATAGGTTTTATAGATTGTTG+GGG - chr4_2:58443953-58443972 Msa0610620:CDS 25.0%
!! TTCTTATTTCTTGTAAACAG+GGG - chr4_2:58444125-58444144 Msa0610620:CDS 25.0%
! TCCGTATATAATTGTTCTTT+AGG + chr4_2:58444217-58444236 None:intergenic 25.0%
! CAATTTGAAAACAAATTACC+TGG + chr4_2:58444623-58444642 None:intergenic 25.0%
!! CATCATGAATATTTTACATG+TGG - chr4_2:58444648-58444667 Msa0610620:CDS 25.0%
! TGATCGATGAAAAAGAATAA+TGG - chr4_2:58444671-58444690 Msa0610620:CDS 25.0%
! ATATGGTGTGAATAATATGT+TGG - chr4_2:58444817-58444836 Msa0610620:CDS 25.0%
! CTCCCAATTCTTATTAAATA+AGG - chr4_2:58444890-58444909 Msa0610620:CDS 25.0%
!!! TTATCTCTTAGGATTAGTTT+CGG - chr4_2:58444962-58444981 Msa0610620:CDS 25.0%
! TGTTGTATTAGTATAAGTGA+GGG - chr4_2:58445035-58445054 Msa0610620:intron 25.0%
! CAATCATATCTCTTAGAATT+TGG - chr4_2:58445093-58445112 Msa0610620:intron 25.0%
! AATTAAATAGTCTCAACCAT+TGG + chr4_2:58445224-58445243 None:intergenic 25.0%
! GCTAAAATAGTTGTTATAAG+TGG + chr4_2:58445359-58445378 None:intergenic 25.0%
! ACTTCAATAAAACTATCTCT+TGG - chr4_2:58445717-58445736 Msa0610620:intron 25.0%
!!! ACAAGTTTGACATTTTTCAA+AGG + chr4_2:58445774-58445793 None:intergenic 25.0%
!! TAACAAAATGGTAATGAGAA+TGG + chr4_2:58445855-58445874 None:intergenic 25.0%
! TTTCTCATCATTATACTCAA+GGG + chr4_2:58446093-58446112 None:intergenic 25.0%
! CAAAATGTGGTTTAATTCAA+AGG - chr4_2:58446393-58446412 Msa0610620:CDS 25.0%
!!! TTTTTTTTTATTGGCACAGT+GGG + chr4_2:58446833-58446852 None:intergenic 25.0%
! TGTTCCATATTCAAACAAAA+AGG + chr4_2:58446875-58446894 None:intergenic 25.0%
! TTTCTGATATGAAATTCACA+AGG + chr4_2:58446944-58446963 None:intergenic 25.0%
! GAAACAAAATTATCTTCATC+AGG + chr4_2:58447097-58447116 None:intergenic 25.0%
!!! AATTTTGTTTCCTTGCATTT+AGG - chr4_2:58447106-58447125 Msa0610620:CDS 25.0%
! GCTTTAATTCTTCAATGATA+AGG + chr4_2:58447170-58447189 None:intergenic 25.0%
! ATAATACAAAGTCTACAAAG+TGG + chr4_2:58447467-58447486 None:intergenic 25.0%
! TATTATAAGCACTCTTGAAA+GGG - chr4_2:58447481-58447500 Msa0610620:CDS 25.0%
CAAAAGTTTGCATGTGTAAA+GGG + chr4_2:58443437-58443456 None:intergenic 30.0%
AATAGTCATAAGTTCAAGCA+AGG + chr4_2:58443625-58443644 None:intergenic 30.0%
TGCTTGAACTTATGACTATT+AGG - chr4_2:58443625-58443644 Msa0610620:three_prime_UTR 30.0%
GCTTGAACTTATGACTATTA+GGG - chr4_2:58443626-58443645 Msa0610620:three_prime_UTR 30.0%
AGAAAAGAAGAAAAACTGTG+TGG + chr4_2:58443912-58443931 None:intergenic 30.0%
AATCTATAAAACCTATCGGT+CGG + chr4_2:58443949-58443968 None:intergenic 30.0%
!! CGATAGGTTTTATAGATTGT+TGG - chr4_2:58443951-58443970 Msa0610620:CDS 30.0%
ATATCATCTCAAAGCCATAA+AGG - chr4_2:58444037-58444056 Msa0610620:CDS 30.0%
CCAACCTATATACCATAAAA+AGG + chr4_2:58444074-58444093 None:intergenic 30.0%
! CCTTTTTATGGTATATAGGT+TGG - chr4_2:58444071-58444090 Msa0610620:CDS 30.0%
! GTTGTGGAGTTTTCTTATTA+TGG - chr4_2:58444175-58444194 Msa0610620:intron 30.0%
TTCAAGGAGAAGAAGTTAAA+AGG + chr4_2:58444362-58444381 None:intergenic 30.0%
!!! TTTTAACTTCTTCTCCTTGA+AGG - chr4_2:58444361-58444380 Msa0610620:intron 30.0%
CGTTTATTACTGATGATCTT+TGG - chr4_2:58444573-58444592 Msa0610620:CDS 30.0%
ATTACTGATGATCTTTGGTA+TGG - chr4_2:58444578-58444597 Msa0610620:CDS 30.0%
! CGATGAAAAAGAATAATGGA+CGG - chr4_2:58444675-58444694 Msa0610620:CDS 30.0%
!! GATGAAAAAGAATAATGGAC+GGG - chr4_2:58444676-58444695 Msa0610620:CDS 30.0%
AAAACCTTATAGCTTCAACA+TGG + chr4_2:58444746-58444765 None:intergenic 30.0%
!! GTTTTAGTCTGAGTTAAAAG+AGG - chr4_2:58444761-58444780 Msa0610620:CDS 30.0%
GTGTTGTATTAGTATAAGTG+AGG - chr4_2:58445034-58445053 Msa0610620:intron 30.0%
ATTAGTATAAGTGAGGGTTA+AGG - chr4_2:58445041-58445060 Msa0610620:intron 30.0%
!!! CTAGCTTTTGGGATTATATA+GGG + chr4_2:58445126-58445145 None:intergenic 30.0%
AAATAGTTGTTATAAGTGGG+AGG + chr4_2:58445355-58445374 None:intergenic 30.0%
!! AATTTTGATCTTGGACATGA+GGG + chr4_2:58445415-58445434 None:intergenic 30.0%
!! AAATTTTGATCTTGGACATG+AGG + chr4_2:58445416-58445435 None:intergenic 30.0%
!! CACACTTCAAATTTTGATCT+TGG + chr4_2:58445424-58445443 None:intergenic 30.0%
TTGTTTGGACAACTATTATC+AGG + chr4_2:58445476-58445495 None:intergenic 30.0%
GTTGTCATGAATATGTTGTT+TGG + chr4_2:58445491-58445510 None:intergenic 30.0%
!! CTCAAATTCTAAAATGGTAC+TGG + chr4_2:58445524-58445543 None:intergenic 30.0%
!!! CTAAATTTTCGGGTTGAATT+AGG + chr4_2:58445554-58445573 None:intergenic 30.0%
AACCCGAAAATTTAGCTAAA+AGG - chr4_2:58445559-58445578 Msa0610620:intron 30.0%
ACCCGAAAATTTAGCTAAAA+GGG - chr4_2:58445560-58445579 Msa0610620:intron 30.0%
!! ACCCTTTTAGCTAAATTTTC+GGG + chr4_2:58445564-58445583 None:intergenic 30.0%
!! CACCCTTTTAGCTAAATTTT+CGG + chr4_2:58445565-58445584 None:intergenic 30.0%
AAAATTTAGCTAAAAGGGTG+CGG - chr4_2:58445565-58445584 Msa0610620:intron 30.0%
AAAATAGTGGTTAGAAGTGA+GGG + chr4_2:58445596-58445615 None:intergenic 30.0%
AAAAATAGTGGTTAGAAGTG+AGG + chr4_2:58445597-58445616 None:intergenic 30.0%
AGCAATATGGCAAAAAATAG+TGG + chr4_2:58445609-58445628 None:intergenic 30.0%
GTTTCTGCAAGATAACAAAA+TGG + chr4_2:58445867-58445886 None:intergenic 30.0%
AATTACATCTATAAGAGGTG+TGG - chr4_2:58445947-58445966 Msa0610620:intron 30.0%
! ATTACATCTATAAGAGGTGT+GGG - chr4_2:58445948-58445967 Msa0610620:intron 30.0%
ATTAAAGTTGGAAGAAGTTC+TGG - chr4_2:58446038-58446057 Msa0610620:intron 30.0%
CTTTCTCATCATTATACTCA+AGG + chr4_2:58446094-58446113 None:intergenic 30.0%
CTTGAGTATAATGATGAGAA+AGG - chr4_2:58446092-58446111 Msa0610620:intron 30.0%
!! CACATTTTGAAAACAAACCT+TGG + chr4_2:58446382-58446401 None:intergenic 30.0%
!! CAAGGTTTGTTTTCAAAATG+TGG - chr4_2:58446380-58446399 Msa0610620:CDS 30.0%
TACAAGTTTATAAAAGGAGC+TGG - chr4_2:58446447-58446466 Msa0610620:CDS 30.0%
ACAAGTTTATAAAAGGAGCT+GGG - chr4_2:58446448-58446467 Msa0610620:CDS 30.0%
TGTATGCATAATCCATAAGA+AGG + chr4_2:58446604-58446623 None:intergenic 30.0%
AAAAAAGGACATTTGTATGC+AGG + chr4_2:58446630-58446649 None:intergenic 30.0%
TAAATAAACGGTTCAGGAAA+GGG + chr4_2:58446696-58446715 None:intergenic 30.0%
ATAAATAAACGGTTCAGGAA+AGG + chr4_2:58446697-58446716 None:intergenic 30.0%
CTCAAATAAATAAACGGTTC+AGG + chr4_2:58446702-58446721 None:intergenic 30.0%
CTGAACCGTTTATTTATTTG+AGG - chr4_2:58446700-58446719 Msa0610620:CDS 30.0%
! TCTAAAATACAGCCAAAGAA+AGG + chr4_2:58446746-58446765 None:intergenic 30.0%
!! CTTTGGCTGTATTTTAGATT+CGG - chr4_2:58446748-58446767 Msa0610620:CDS 30.0%
!! TTTGGCTGTATTTTAGATTC+GGG - chr4_2:58446749-58446768 Msa0610620:CDS 30.0%
!!! CTTTTTTTTTATTGGCACAG+TGG + chr4_2:58446834-58446853 None:intergenic 30.0%
!! TGAGCCTTTTTGTTTGAATA+TGG - chr4_2:58446868-58446887 Msa0610620:intron 30.0%
TCAAAAGTCTATCTGAACTT+AGG - chr4_2:58447065-58447084 Msa0610620:CDS 30.0%
ATTGAAGAATTAAAGCAGCA+GGG - chr4_2:58447174-58447193 Msa0610620:CDS 30.0%
! TTTAAAGCTCCACATACTAA+AGG + chr4_2:58447290-58447309 None:intergenic 30.0%
AAATAAACAAGGTTCACTTC+TGG - chr4_2:58447316-58447335 Msa0610620:CDS 30.0%
!! AGCTGTGTAGTATTTTAAAG+AGG - chr4_2:58447400-58447419 Msa0610620:CDS 30.0%
GTATTATAAGCACTCTTGAA+AGG - chr4_2:58447480-58447499 Msa0610620:CDS 30.0%
ATTATAAGCACTCTTGAAAG+GGG - chr4_2:58447482-58447501 Msa0610620:CDS 30.0%
! ACATTCCTTTAACTTACAGT+AGG + chr4_2:58447512-58447531 None:intergenic 30.0%
GCAAAAGTTTGCATGTGTAA+AGG + chr4_2:58443438-58443457 None:intergenic 35.0%
! ATTTTACGGCGATTTAGTCT+TGG - chr4_2:58443663-58443682 Msa0610620:three_prime_UTR 35.0%
AGTAATTTAATCCGACCGAT+AGG - chr4_2:58443935-58443954 Msa0610620:CDS 35.0%
CCTATATACCATAAAAAGGC+TGG + chr4_2:58444070-58444089 None:intergenic 35.0%
! CCAGCCTTTTTATGGTATAT+AGG - chr4_2:58444067-58444086 Msa0610620:CDS 35.0%
! GTTTTCTTATTATGGTGCAC+CGG - chr4_2:58444183-58444202 Msa0610620:intron 35.0%
! AGTTGATTCTCATGAGCAAA+AGG + chr4_2:58444294-58444313 None:intergenic 35.0%
!! GGATGAAACATCTTTTGGTT+CGG + chr4_2:58444497-58444516 None:intergenic 35.0%
! GCAAAGGATGAAACATCTTT+TGG + chr4_2:58444502-58444521 None:intergenic 35.0%
GTTACCATGTTGAAGCTATA+AGG - chr4_2:58444739-58444758 Msa0610620:CDS 35.0%
GTCTGAGTTAAAAGAGGAAA+AGG - chr4_2:58444767-58444786 Msa0610620:CDS 35.0%
AGCGTCTTGAATTATCTCTT+AGG - chr4_2:58444951-58444970 Msa0610620:CDS 35.0%
!!! GCTAGCTTTTGGGATTATAT+AGG + chr4_2:58445127-58445146 None:intergenic 35.0%
! TAATCCCAAAAGCTAGCTTA+TGG - chr4_2:58445130-58445149 Msa0610620:intron 35.0%
! AATCCCAAAAGCTAGCTTAT+GGG - chr4_2:58445131-58445150 Msa0610620:intron 35.0%
TCATCCATGTATAGATCCAA+CGG - chr4_2:58445266-58445285 Msa0610620:intron 35.0%
AATCTCACATGACAGTGATA+TGG + chr4_2:58445381-58445400 None:intergenic 35.0%
! ATTTGAAGTGTGAAGTTTGC+AGG - chr4_2:58445432-58445451 Msa0610620:intron 35.0%
! AAATGGTACTGGAATCTTGT+CGG + chr4_2:58445513-58445532 None:intergenic 35.0%
! AAATTTAGCTAAAAGGGTGC+GGG - chr4_2:58445566-58445585 Msa0610620:intron 35.0%
TGCCATATTGCTAATTAACG+TGG - chr4_2:58445617-58445636 Msa0610620:intron 35.0%
GCCATATTGCTAATTAACGT+GGG - chr4_2:58445618-58445637 Msa0610620:intron 35.0%
ACCCACGTTAATTAGCAATA+TGG + chr4_2:58445622-58445641 None:intergenic 35.0%
!! ATTTTTCAAAGGATTGCCTC+AGG + chr4_2:58445763-58445782 None:intergenic 35.0%
AAACATTTGTTCGAGCTGAT+GGG - chr4_2:58445883-58445902 Msa0610620:intron 35.0%
TGTTAAAGTCTTCTGCGAAT+GGG + chr4_2:58445917-58445936 None:intergenic 35.0%
ATGTTAAAGTCTTCTGCGAA+TGG + chr4_2:58445918-58445937 None:intergenic 35.0%
! TCTCCAATCAACAGTCTTAT+TGG - chr4_2:58446005-58446024 Msa0610620:intron 35.0%
TTTGACTACAGGGACTATAA+TGG - chr4_2:58446061-58446080 Msa0610620:intron 35.0%
! ATCATTATACTCAAGGGCAT+AGG + chr4_2:58446087-58446106 None:intergenic 35.0%
TTGTTACGAGATCAAGTTCA+AGG + chr4_2:58446346-58446365 None:intergenic 35.0%
TGCATAATCCATAAGAAGGT+TGG + chr4_2:58446600-58446619 None:intergenic 35.0%
!! TTGGCTGTATTTTAGATTCG+GGG - chr4_2:58446750-58446769 Msa0610620:intron 35.0%
AATTCACAAGGCCTTAATGA+CGG + chr4_2:58446932-58446951 None:intergenic 35.0%
ATGAACTGGTGTTCAACATT+TGG + chr4_2:58446983-58447002 None:intergenic 35.0%
!! CAAAACTTGTTGGTATGAAC+TGG + chr4_2:58446997-58447016 None:intergenic 35.0%
! TTCATACCAACAAGTTTTGC+AGG - chr4_2:58446998-58447017 Msa0610620:intron 35.0%
! GATTTTCCTGCAAAACTTGT+TGG + chr4_2:58447007-58447026 None:intergenic 35.0%
! AAGTTTTGCAGGAAAATCTC+CGG - chr4_2:58447009-58447028 Msa0610620:intron 35.0%
TGAATTCCAAGTCTTCTTTG+AGG + chr4_2:58447048-58447067 None:intergenic 35.0%
CATTGAAGAATTAAAGCAGC+AGG - chr4_2:58447173-58447192 Msa0610620:CDS 35.0%
TTGAAGAATTAAAGCAGCAG+GGG - chr4_2:58447175-58447194 Msa0610620:CDS 35.0%
TGCAGCATATAAACTCATTG+AGG - chr4_2:58447217-58447236 Msa0610620:CDS 35.0%
GAACACCTACTGTAAGTTAA+AGG - chr4_2:58447504-58447523 Msa0610620:CDS 35.0%
CTGTTGAGCTTCAATCTATT+CGG - chr4_2:58447543-58447562 Msa0610620:CDS 35.0%
AGCTTCAATCTATTCGGTAT+GGG - chr4_2:58447549-58447568 Msa0610620:CDS 35.0%
CCATTCTGGATCAACTCAAT+CGG - chr4_2:58443359-58443378 Msa0610620:three_prime_UTR 40.0%
GACCTGGAAAGAAACTACTA+TGG - chr4_2:58443396-58443415 Msa0610620:three_prime_UTR 40.0%
GACCATAGTAGTTTCTTTCC+AGG + chr4_2:58443401-58443420 None:intergenic 40.0%
! CACATGCAAACTTTTGCAGT+TGG - chr4_2:58443441-58443460 Msa0610620:three_prime_UTR 40.0%
CAATGTAGGCCAAGAAAAGT+AGG + chr4_2:58443493-58443512 None:intergenic 40.0%
TCATTCCAGCGATTCAATGT+AGG + chr4_2:58443507-58443526 None:intergenic 40.0%
! GAAGACAGGGCTAACTATTT+TGG - chr4_2:58443534-58443553 Msa0610620:three_prime_UTR 40.0%
GGAGTTCTACCTGAAACTTT+GGG - chr4_2:58443570-58443589 Msa0610620:three_prime_UTR 40.0%
GCAACAAAGACAAGAATAGC+TGG + chr4_2:58443735-58443754 None:intergenic 40.0%
TTGTTGCGCATAAAGTTCAC+AGG - chr4_2:58443748-58443767 Msa0610620:CDS 40.0%
CTATGTTGCAGGTTTCTACA+TGG - chr4_2:58443836-58443855 Msa0610620:CDS 40.0%
!! AGGTTTCTACATGGCTTTAG+TGG - chr4_2:58443845-58443864 Msa0610620:CDS 40.0%
ATACCATAAAAAGGCTGGCA+TGG + chr4_2:58444065-58444084 None:intergenic 40.0%
! TGTTCTTTAGGAGTTTGTGC+CGG + chr4_2:58444205-58444224 None:intergenic 40.0%
!! TTATATACGGAGCTTGCTGA+TGG - chr4_2:58444226-58444245 Msa0610620:intron 40.0%
GTTGCAAGTCAAGAGACATA+TGG - chr4_2:58444383-58444402 Msa0610620:intron 40.0%
TCAAGAGACATATGGAACCT+TGG - chr4_2:58444391-58444410 Msa0610620:intron 40.0%
CAAGAGACATATGGAACCTT+GGG - chr4_2:58444392-58444411 Msa0610620:intron 40.0%
CAACTTCTCGATTTCCTGTT+CGG + chr4_2:58444433-58444452 None:intergenic 40.0%
! TCGACATGTAGCTGTTGATT+TGG - chr4_2:58444466-58444485 Msa0610620:intron 40.0%
! CTTTGGTATGGCATTTTTGC+TGG - chr4_2:58444590-58444609 Msa0610620:CDS 40.0%
! ATTTTTGCTGGAACAAACCC+AGG - chr4_2:58444602-58444621 Msa0610620:CDS 40.0%
GCTTCAACATGGTAACAAAG+AGG + chr4_2:58444735-58444754 None:intergenic 40.0%
GAGATAATTCAAGACGCTCT+AGG + chr4_2:58444949-58444968 None:intergenic 40.0%
! ATCCCAAAAGCTAGCTTATG+GGG - chr4_2:58445132-58445151 Msa0610620:intron 40.0%
ACAACCGTTGGATCTATACA+TGG + chr4_2:58445273-58445292 None:intergenic 40.0%
! TATAGTTTGCGAGTTTCCTG+AGG - chr4_2:58445744-58445763 Msa0610620:intron 40.0%
GAAACATTTGTTCGAGCTGA+TGG - chr4_2:58445882-58445901 Msa0610620:intron 40.0%
AACATTTGTTCGAGCTGATG+GGG - chr4_2:58445884-58445903 Msa0610620:intron 40.0%
! ATAAGAGGTGTGGGTGATAT+TGG - chr4_2:58445957-58445976 Msa0610620:intron 40.0%
TTGGAGACTGCAAATCTATG+CGG + chr4_2:58445992-58446011 None:intergenic 40.0%
CTGCCAATAAGACTGTTGAT+TGG + chr4_2:58446011-58446030 None:intergenic 40.0%
!! CAATCAACAGTCTTATTGGC+AGG - chr4_2:58446009-58446028 Msa0610620:intron 40.0%
!! AGAAGTTCTGGTTTGACTAC+AGG - chr4_2:58446050-58446069 Msa0610620:intron 40.0%
!! GAAGTTCTGGTTTGACTACA+GGG - chr4_2:58446051-58446070 Msa0610620:intron 40.0%
!!! CTCACTGATTTTCTTGTCGT+TGG - chr4_2:58446125-58446144 Msa0610620:intron 40.0%
TCTGACCAGTCAAGAGAATA+AGG + chr4_2:58446193-58446212 None:intergenic 40.0%
! TTCTCTTGACTGGTCAGAAT+AGG - chr4_2:58446195-58446214 Msa0610620:intron 40.0%
! TCTCTTGACTGGTCAGAATA+GGG - chr4_2:58446196-58446215 Msa0610620:intron 40.0%
! GGTCGTTTGAAACTAAGAGT+TGG - chr4_2:58446266-58446285 Msa0610620:intron 40.0%
! ACAACAAATGAAGCACTCCA+AGG - chr4_2:58446362-58446381 Msa0610620:CDS 40.0%
TCCTGAGACTGAGATGAAAA+CGG + chr4_2:58446571-58446590 None:intergenic 40.0%
GAGTAGAACCAACCTTCTTA+TGG - chr4_2:58446589-58446608 Msa0610620:intron 40.0%
AGAAAGGAAAAGTCAGCTCT+AGG + chr4_2:58446730-58446749 None:intergenic 40.0%
!! GAGCTGACTTTTCCTTTCTT+TGG - chr4_2:58446731-58446750 Msa0610620:CDS 40.0%
! CAAATGAATGGTTCTACTGC+TGG - chr4_2:58446779-58446798 Msa0610620:intron 40.0%
! AATGGTTCTACTGCTGGAAT+TGG - chr4_2:58446785-58446804 Msa0610620:intron 40.0%
ATCGTAGATGGTTCTTCAAC+TGG + chr4_2:58446902-58446921 None:intergenic 40.0%
CGATAGTCAAACCGTCATTA+AGG - chr4_2:58446918-58446937 Msa0610620:intron 40.0%
! TTGAGGAAGCTTTGATGAAC+CGG + chr4_2:58447031-58447050 None:intergenic 40.0%
AAGCTTCCTCAAAGAAGACT+TGG - chr4_2:58447039-58447058 Msa0610620:intron 40.0%
! TTCAGGTTCTCCTAAATGCA+AGG + chr4_2:58447119-58447138 None:intergenic 40.0%
! TGTTTTCTTCTCTTCGCTTC+AGG + chr4_2:58447136-58447155 None:intergenic 40.0%
!! TCGTCGCTTTAGAAAAGCAA+AGG - chr4_2:58447264-58447283 Msa0610620:CDS 40.0%
AAGCAAAGGCCTTTAGTATG+TGG - chr4_2:58447278-58447297 Msa0610620:CDS 40.0%
CGAATAGATTGAAGCTCAAC+AGG + chr4_2:58447545-58447564 None:intergenic 40.0%
GAGCTTCAATCTATTCGGTA+TGG - chr4_2:58447548-58447567 Msa0610620:CDS 40.0%
!! CCGATTGAGTTGATCCAGAA+TGG + chr4_2:58443362-58443381 None:intergenic 45.0%
TTCTGGATCAACTCAATCGG+AGG - chr4_2:58443362-58443381 Msa0610620:three_prime_UTR 45.0%
ATCAACTCAATCGGAGGAGT+CGG - chr4_2:58443368-58443387 Msa0610620:three_prime_UTR 45.0%
ATGTGTAAAGGGCTGGATGA+AGG + chr4_2:58443426-58443445 None:intergenic 45.0%
AGTTTGCATGTGTAAAGGGC+TGG + chr4_2:58443433-58443452 None:intergenic 45.0%
!! GCAATGCTGCCTACTTTTCT+TGG - chr4_2:58443481-58443500 Msa0610620:three_prime_UTR 45.0%
GGGAGTTCTACCTGAAACTT+TGG - chr4_2:58443569-58443588 Msa0610620:three_prime_UTR 45.0%
!! TTTAGTCTTGGCACTGCGAT+TGG - chr4_2:58443675-58443694 Msa0610620:three_prime_UTR 45.0%
TTGGCACTGCGATTGGATTT+CGG - chr4_2:58443682-58443701 Msa0610620:three_prime_UTR 45.0%
ATTGGATTTCGGATCAGAGG+AGG - chr4_2:58443693-58443712 Msa0610620:three_prime_UTR 45.0%
CGCATAAAGTTCACAGGCAA+TGG - chr4_2:58443754-58443773 Msa0610620:CDS 45.0%
ACCAAAATTCCCCACCTCAA+GGG + chr4_2:58443808-58443827 None:intergenic 45.0%
AACCAAAATTCCCCACCTCA+AGG + chr4_2:58443809-58443828 None:intergenic 45.0%
!!! GTGGGGAATTTTGGTTCTTC+TGG - chr4_2:58443813-58443832 Msa0610620:CDS 45.0%
! GAACCATGCCAGCCTTTTTA+TGG - chr4_2:58444059-58444078 Msa0610620:CDS 45.0%
ATTTCTTGTAAACAGGGGCC+AGG - chr4_2:58444130-58444149 Msa0610620:intron 45.0%
!! CTCTTGACTTGCAACCTTCA+AGG + chr4_2:58444378-58444397 None:intergenic 45.0%
GCTTCTAACAATAGCACCCA+AGG + chr4_2:58444411-58444430 None:intergenic 45.0%
GCTATTGTTAGAAGCCGAAC+AGG - chr4_2:58444416-58444435 Msa0610620:intron 45.0%
CGAACAGGAAATCGAGAAGT+TGG - chr4_2:58444431-58444450 Msa0610620:intron 45.0%
TATACACCAGGTCCAAGACT+GGG + chr4_2:58444527-58444546 None:intergenic 45.0%
ATATACACCAGGTCCAAGAC+TGG + chr4_2:58444528-58444547 None:intergenic 45.0%
CTTGGACCTGGTGTATATCT+TGG - chr4_2:58444530-58444549 Msa0610620:CDS 45.0%
ACTGCACCAAGATATACACC+AGG + chr4_2:58444539-58444558 None:intergenic 45.0%
! TGGTGTATATCTTGGTGCAG+TGG - chr4_2:58444538-58444557 Msa0610620:CDS 45.0%
AGAGTCTGGATGAGTCATAG+AGG - chr4_2:58444703-58444722 Msa0610620:CDS 45.0%
!!! CACCCCATAAGCTAGCTTTT+GGG + chr4_2:58445137-58445156 None:intergenic 45.0%
!!! TCACCCCATAAGCTAGCTTT+TGG + chr4_2:58445138-58445157 None:intergenic 45.0%
GGCAGGCAAGTGATTAAAGT+TGG - chr4_2:58446026-58446045 Msa0610620:intron 45.0%
CTTCAAGGTCAAACGTTTGC+TGG + chr4_2:58446157-58446176 None:intergenic 45.0%
CAGCAAACGTTTGACCTTGA+AGG - chr4_2:58446155-58446174 Msa0610620:intron 45.0%
TTTGACCTTGAAGGCGATAG+TGG - chr4_2:58446164-58446183 Msa0610620:intron 45.0%
!! GGAAGCCTTATTCTCTTGAC+TGG - chr4_2:58446185-58446204 Msa0610620:intron 45.0%
ACCACTTGTCCAATTCTCAG+GGG + chr4_2:58446297-58446316 None:intergenic 45.0%
CACCACTTGTCCAATTCTCA+GGG + chr4_2:58446298-58446317 None:intergenic 45.0%
ACACCACTTGTCCAATTCTC+AGG + chr4_2:58446299-58446318 None:intergenic 45.0%
! TCCGTTTTCATCTCAGTCTC+AGG - chr4_2:58446567-58446586 Msa0610620:intron 45.0%
!! GCTGGAATTGGTTCTACAGT+TGG - chr4_2:58446797-58446816 Msa0610620:intron 45.0%
GACGGTTTGACTATCGTAGA+TGG + chr4_2:58446914-58446933 None:intergenic 45.0%
GGATTGAGAGCTCACCATTC+TGG - chr4_2:58443345-58443364 Msa0610620:three_prime_UTR 50.0%
CTTGGCCTACATTGAATCGC+TGG - chr4_2:58443499-58443518 Msa0610620:three_prime_UTR 50.0%
GAATGACGCAGCAGAAGACA+GGG - chr4_2:58443521-58443540 Msa0610620:three_prime_UTR 50.0%
GGCAATCGACCCAAAGTTTC+AGG + chr4_2:58443582-58443601 None:intergenic 50.0%
GCGATTGGATTTCGGATCAG+AGG - chr4_2:58443690-58443709 Msa0610620:three_prime_UTR 50.0%
!! CAGCAGGTAGGCATTGAACA+TGG + chr4_2:58443785-58443804 None:intergenic 50.0%
! GGTTCTTCTGGCTATGTTGC+AGG - chr4_2:58443825-58443844 Msa0610620:CDS 50.0%
AGGCTGGCATGGTTCCTTTA+TGG + chr4_2:58444054-58444073 None:intergenic 50.0%
TTGGTGCGACGTAGATGTTG+TGG - chr4_2:58444159-58444178 Msa0610620:intron 50.0%
!! GGAGCTTGCTGATGGCTTAA+GGG - chr4_2:58444234-58444253 Msa0610620:intron 50.0%
!! GAGCTTGCTGATGGCTTAAG+GGG - chr4_2:58444235-58444254 Msa0610620:intron 50.0%
AATGGACGGGTCATAGAGTC+TGG - chr4_2:58444689-58444708 Msa0610620:CDS 50.0%
CAAGAGATGATCCTTGTCCG+AGG + chr4_2:58445167-58445186 None:intergenic 50.0%
TTGGATCACCGCATGAGAGA+TGG + chr4_2:58445205-58445224 None:intergenic 50.0%
TCTCTCATGCGGTGATCCAA+TGG - chr4_2:58445205-58445224 Msa0610620:intron 50.0%
GACAGATCGCACGAGAAGAT+TGG - chr4_2:58445304-58445323 Msa0610620:intron 50.0%
! GCACGAGAAGATTGGCTGAA+GGG - chr4_2:58445312-58445331 Msa0610620:intron 50.0%
! CACGAGAAGATTGGCTGAAG+GGG - chr4_2:58445313-58445332 Msa0610620:intron 50.0%
ATCTTGGACATGAGGGACTG+TGG + chr4_2:58445408-58445427 None:intergenic 50.0%
ATCAGGCCACAGCAGATGTT+CGG + chr4_2:58445459-58445478 None:intergenic 50.0%
GAGACTGCAAATCTATGCGG+TGG + chr4_2:58445989-58446008 None:intergenic 50.0%
TTGTCCAATTCTCAGGGGGT+TGG + chr4_2:58446292-58446311 None:intergenic 50.0%
CCACTTGTCCAATTCTCAGG+GGG + chr4_2:58446296-58446315 None:intergenic 50.0%
!! TGGACAAGTGGTGTTGACCT+TGG - chr4_2:58446305-58446324 Msa0610620:CDS 50.0%
!! CAAGTGGTGTTGACCTTGGA+CGG - chr4_2:58446309-58446328 Msa0610620:CDS 50.0%
TCGGGGCAAGAGCAAATGAA+TGG - chr4_2:58446767-58446786 Msa0610620:intron 50.0%
GGAATGACGCAGCAGAAGAC+AGG - chr4_2:58443520-58443539 Msa0610620:three_prime_UTR 55.0%
ACTTTGGGTCGATTGCCGTC+AGG - chr4_2:58443585-58443604 Msa0610620:three_prime_UTR 55.0%
GTAGTAGCCTGCTGTCCTGA+CGG + chr4_2:58443603-58443622 None:intergenic 55.0%
! GCCCTTGAGGTGGGGAATTT+TGG - chr4_2:58443804-58443823 Msa0610620:CDS 55.0%
TCTTGTAAACAGGGGCCAGG+AGG - chr4_2:58444133-58444152 Msa0610620:intron 55.0%
!! CGGAGCTTGCTGATGGCTTA+AGG - chr4_2:58444233-58444252 Msa0610620:intron 55.0%
AGGGGAAGCGATTCATGCGT+TGG - chr4_2:58444253-58444272 Msa0610620:intron 55.0%
!! AGCGATTCATGCGTTGGCTC+TGG - chr4_2:58444259-58444278 Msa0610620:intron 55.0%
!! ATGCGTTGGCTCTGGTTCTC+AGG - chr4_2:58444267-58444286 Msa0610620:intron 55.0%
CATCCTTTGCCACCCAGTCT+TGG - chr4_2:58444512-58444531 Msa0610620:intron 55.0%
! TTATGGGGTGAGCGTTGCCT+CGG - chr4_2:58445147-58445166 Msa0610620:intron 55.0%
CTGTGCTGCCATCTCTCATG+CGG - chr4_2:58445194-58445213 Msa0610620:intron 55.0%
CCTGCGGTAGTTACAACCGT+TGG + chr4_2:58445285-58445304 None:intergenic 55.0%
CCAACGGTTGTAACTACCGC+AGG - chr4_2:58445282-58445301 Msa0610620:intron 55.0%
TTCTCGTGCGATCTGTCCTG+CGG + chr4_2:58445301-58445320 None:intergenic 55.0%
! CGCACGAGAAGATTGGCTGA+AGG - chr4_2:58445311-58445330 Msa0610620:intron 55.0%
AGTGGGAGGCAACGCAGATT+CGG + chr4_2:58445341-58445360 None:intergenic 55.0%
GGCTTCCACTATCGCCTTCA+AGG + chr4_2:58446172-58446191 None:intergenic 55.0%
CAGATAATGCCAACAGGGCG+GGG + chr4_2:58446227-58446246 None:intergenic 55.0%
CCAGATAATGCCAACAGGGC+GGG + chr4_2:58446228-58446247 None:intergenic 55.0%
CCCAGATAATGCCAACAGGG+CGG + chr4_2:58446229-58446248 None:intergenic 55.0%
CCGCCCTGTTGGCATTATCT+GGG - chr4_2:58446226-58446245 Msa0610620:intron 55.0%
CGCCCTGTTGGCATTATCTG+GGG - chr4_2:58446227-58446246 Msa0610620:intron 55.0%
CGCCCCAGATAATGCCAACA+GGG + chr4_2:58446232-58446251 None:intergenic 55.0%
CCTGTTGGCATTATCTGGGG+CGG - chr4_2:58446230-58446249 Msa0610620:intron 55.0%
! CTGTTGGCATTATCTGGGGC+GGG - chr4_2:58446231-58446250 Msa0610620:intron 55.0%
TTGGCCAACCCCCTGAGAAT+TGG - chr4_2:58446285-58446304 Msa0610620:intron 55.0%
CCCCCTGAGAATTGGACAAG+TGG - chr4_2:58446293-58446312 Msa0610620:CDS 55.0%
GGAGATCAAGAAGCCGTCCA+AGG + chr4_2:58446325-58446344 None:intergenic 55.0%
! TCAATCGGAGGAGTCGGCTC+TGG - chr4_2:58443374-58443393 Msa0610620:three_prime_UTR 60.0%
TCGATTGCCGTCAGGACAGC+AGG - chr4_2:58443593-58443612 Msa0610620:three_prime_UTR 60.0%
ATGCCTACCTGCTGCCCTTG+AGG - chr4_2:58443791-58443810 Msa0610620:CDS 60.0%
CTACCTGCTGCCCTTGAGGT+GGG - chr4_2:58443795-58443814 Msa0610620:CDS 60.0%
TACCTGCTGCCCTTGAGGTG+GGG - chr4_2:58443796-58443815 Msa0610620:CDS 60.0%
!! AACAGGGGCCAGGAGGTGTT+TGG - chr4_2:58444140-58444159 Msa0610620:intron 60.0%
ACGTCGCACCAAACACCTCC+TGG + chr4_2:58444151-58444170 None:intergenic 60.0%
GGTCCAAGACTGGGTGGCAA+AGG + chr4_2:58444518-58444537 None:intergenic 60.0%
TTGCCACCCAGTCTTGGACC+TGG - chr4_2:58444518-58444537 Msa0610620:intron 60.0%
ACACCAGGTCCAAGACTGGG+TGG + chr4_2:58444524-58444543 None:intergenic 60.0%
GCAGGACCGAACATCTGCTG+TGG - chr4_2:58445450-58445469 Msa0610620:intron 60.0%
CCCGCCCTGTTGGCATTATC+TGG - chr4_2:58446225-58446244 Msa0610620:intron 60.0%
CCGCCCCAGATAATGCCAAC+AGG + chr4_2:58446233-58446252 None:intergenic 60.0%
CCACCTCAAGGGCAGCAGGT+AGG + chr4_2:58443797-58443816 None:intergenic 65.0%
CCTACCTGCTGCCCTTGAGG+TGG - chr4_2:58443794-58443813 Msa0610620:CDS 65.0%
TTCCCCACCTCAAGGGCAGC+AGG + chr4_2:58443801-58443820 None:intergenic 65.0%
! GGTGAGCGTTGCCTCGGACA+AGG - chr4_2:58445153-58445172 Msa0610620:intron 65.0%
TGGGGCGGGACAGCTAATCG+AGG - chr4_2:58446245-58446264 Msa0610620:intron 65.0%
!! GGAGGAGTCGGCTCTGGACC+TGG - chr4_2:58443380-58443399 Msa0610620:three_prime_UTR 70.0%
AGGGAGAAGCCCCGCCCTGT+TGG - chr4_2:58446215-58446234 Msa0610620:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58443327 58447586 58443327 ID=Msa0610620;Name=Msa0610620
chr4_2 mRNA 58443327 58447586 58443327 ID=Msa0610620-mRNA-1;Parent=Msa0610620;Name=Msa0610620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.8|1|1|1|5|400|614
chr4_2 exon 58443327 58444148 58443327 ID=Msa0610620-mRNA-1:exon:15360;Parent=Msa0610620-mRNA-1
chr4_2 exon 58444530 58445030 58444530 ID=Msa0610620-mRNA-1:exon:15359;Parent=Msa0610620-mRNA-1
chr4_2 exon 58446290 58446530 58446290 ID=Msa0610620-mRNA-1:exon:15358;Parent=Msa0610620-mRNA-1
chr4_2 exon 58446625 58446768 58446625 ID=Msa0610620-mRNA-1:exon:15357;Parent=Msa0610620-mRNA-1
chr4_2 exon 58447050 58447586 58447050 ID=Msa0610620-mRNA-1:exon:15356;Parent=Msa0610620-mRNA-1
chr4_2 CDS 58447050 58447586 58447050 ID=Msa0610620-mRNA-1:cds;Parent=Msa0610620-mRNA-1
chr4_2 CDS 58446625 58446768 58446625 ID=Msa0610620-mRNA-1:cds;Parent=Msa0610620-mRNA-1
chr4_2 CDS 58446290 58446530 58446290 ID=Msa0610620-mRNA-1:cds;Parent=Msa0610620-mRNA-1
chr4_2 CDS 58444530 58445030 58444530 ID=Msa0610620-mRNA-1:cds;Parent=Msa0610620-mRNA-1
chr4_2 CDS 58443727 58444148 58443727 ID=Msa0610620-mRNA-1:cds;Parent=Msa0610620-mRNA-1
chr4_2 three_prime_UTR 58443327 58443726 58443327 ID=Msa0610620-mRNA-1:three_prime_utr;Parent=Msa0610620-mRNA-1
Gene Sequence

>Msa0610620

ATGAATCGGAATCGATTGGGATTGAGAGCTCACCATTCTGGATCAACTCAATCGGAGGAGTCGGCTCTGGACCTGGAAAGAAACTACTATGGTCATCCTTCATCCAGCCCTTTACACATGCAAACTTTTGCAGTTGGTGTTCAACATTCTGAGAGCAATGCTGCCTACTTTTCTTGGCCTACATTGAATCGCTGGAATGACGCAGCAGAAGACAGGGCTAACTATTTTGGTAATCTTCAAAAGGGAGTTCTACCTGAAACTTTGGGTCGATTGCCGTCAGGACAGCAGGCTACTACCTTGCTTGAACTTATGACTATTAGGGCATTTCATAGTAAGATTTTACGGCGATTTAGTCTTGGCACTGCGATTGGATTTCGGATCAGAGGAGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTTGTTGCGCATAAAGTTCACAGGCAATGGCTCAACCATGTTCAATGCCTACCTGCTGCCCTTGAGGTGGGGAATTTTGGTTCTTCTGGCTATGTTGCAGGTTTCTACATGGCTTTAGGGCCAGGAGGTGTTTGGTGCGACGTAGATGTTGTGGAGTTTTCTTATTATGGTGCACCGGCACAAACTCCTAAAGAACAATTATATACGGAGCTTGCTGATGGCTTAAGGGGAAGCGATTCATGCGTTGGCTCTGGTTCTCAGGTTGCAAGTCAAGAGACATATGGAACCTTGGGTGCTATTGTTAGAAGCCGAACAGGAAATCGAGAAGTTGGTTTTCTAACAAATCGACATGTAGCTGTTGATTTGGACTATCCGAACCAAAAGATGTTTCATCCTTTGCCACCCAGTCTTGGACCTGGTGTATATCTTGGTGCAGTGGAGAGAGCAACATCGTTTATTACTGATGATCTTTGGTATGGCATTTTTGCTGGAACAAACCCAGAAACATTTGTTCGAGCTGATGGGGCATTCATCCCATTCGCAGAAGACTTTAACATGAACAATGTAATTACATCTATAAGAGGTGTGGGTGATATTGGTGAAGTCCACCGCATAGATTTGCAGTCTCCAATCAACAGTCTTATTGGCAGGCAAGTGATTAAAGTTGGAAGAAGTTCTGGTTTGACTACAGGGACTATAATGGCCTATGCCCTTGAGTATAATGATGAGAAAGGTATTTGTTTTCTCACTGATTTTCTTGTCGTTGGTGAGAACCAGCAAACGTTTGACCTTGAAGGCGATAGTGGAAGCCTTATTCTCTTGACTGGTCAGAATAGGGAGAAGCCCCGCCCTGTTGGCATTATCTGGGGCGGGACAGCTAATCGAGGTCGTTTGAAACTAAGAGTTGGCCAACCCCCTGAGAATTGGACAAGTGGTGTTGACCTTGGACGGCTTCTTGATCTCCTTGAACTTGATCTCGTAACAACAAATGAAGCACTCCAAGATTCGGGGCAAGAGCAAATGAATGGTTCTACTGCTGGAATTGGTTCTACAGTTGGAGAATCATCTCCCACTGTGCCAATAAAAAAAAAGCTTGAAGAGAGCTTTGAGCCTTTTTGTTTGAATATGGAACACGTTCCAGTTGAAGAACCATCTACGATAGTCAAACCGTCATTAAGGCCTTGTGAATTTCATATCAGAAATGAGATTGAAACAGTTCCAAATGTTGAACACCAGTTCATACCAACAAGTTTTGCAGGAAAATCTCCGGTTCATCAAAGCTTCCTCAAAGAAGACTTGGAATTCAAAAGTCTATCTGAACTTAGGAATGAACCTGATGAAGATAATTTTGTTTCCTTGCATTTAGGAGAACCTGAAGCGAAGAGAAGAAAACATTCAAATTCTTCCTTATCATTGAAGAATTAA
Protein sequence

>Msa0610620

MNRNRLGLRAHHSGSTQSEESALDLERNYYGHPSSSPLHMQTFAVGVQHSESNAAYFSWPTLNRWNDAAEDRANYFGNLQKGVLPETLGRLPSGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRIRGGVLTDIPAILVFVAHKVHRQWLNHVQCLPAALEVGNFGSSGYVAGFYMALGPGGVWCDVDVVEFSYYGAPAQTPKEQLYTELADGLRGSDSCVGSGSQVASQETYGTLGAIVRSRTGNREVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNMNNVITSIRGVGDIGEVHRIDLQSPINSLIGRQVIKVGRSSGLTTGTIMAYALEYNDEKGICFLTDFLVVGENQQTFDLEGDSGSLILLTGQNREKPRPVGIIWGGTANRGRLKLRVGQPPENWTSGVDLGRLLDLLELDLVTTNEALQDSGQEQMNGSTAGIGSTVGESSPTVPIKKKLEESFEPFCLNMEHVPVEEPSTIVKPSLRPCEFHIRNEIETVPNVEHQFIPTSFAGKSPVHQSFLKEDLEFKSLSELRNEPDEDNFVSLHLGEPEAKRRKHSNSSLSLKN*