AlfalfaGEDB | Msa0696790

M. sativa cultivar zhongmu-4 / Msa0696790

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00188.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696790	XP_003608314.1	79.654	231	14	2	45	242	1	231	1.06e-111	353
Msa0696790	XP_003608314.1	90.099	101	4	1	243	337	333	433	1.61e-46	181

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696790	sp\|Q9ASS4\|Y5838_ARATH	37.143	210	116	5	433	635	61	261	2.66e-32	135
Msa0696790	sp\|Q9ASS4\|Y5838_ARATH	37.143	105	51	2	162	256	288	387	7.47e-13	75.1

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696790	G7JSZ7	79.654	231	14	2	45	242	1	231	5.06e-112	353
Msa0696790	G7JSZ7	90.099	101	4	1	243	337	333	433	7.71e-47	181

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054250	Msa0696790	0.823188	1.584757e-53	-8.615850e-47
Msa0054260	Msa0696790	0.821913	3.136018e-53	-8.615850e-47
Msa0054310	Msa0696790	0.834304	3.239008e-56	-8.615850e-47
Msa0055690	Msa0696790	0.801211	1.002200e-48	-8.615850e-47
Msa0055730	Msa0696790	0.814803	1.279296e-51	-8.615850e-47
Msa0085290	Msa0696790	0.822000	2.992993e-53	-8.615850e-47
Msa0100070	Msa0696790	0.809089	2.248115e-50	-8.615850e-47
Msa0100080	Msa0696790	0.816455	5.482980e-52	-8.615850e-47
Msa0100090	Msa0696790	0.821482	3.943143e-53	-8.615850e-47
Msa0141230	Msa0696790	0.811141	8.121206e-51	-8.615850e-47

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696790	MtrunA17_Chr4g0049201	79.654	231	14	2	45	242	1	231	9.73e-116	353
Msa0696790	MtrunA17_Chr4g0049201	90.099	101	4	1	243	337	333	433	1.48e-50	181
Msa0696790	MtrunA17_Chr4g0049181	62.927	205	73	3	433	637	81	282	9.49e-76	254
Msa0696790	MtrunA17_Chr4g0049181	62.295	183	35	2	94	242	242	424	3.45e-64	223
Msa0696790	MtrunA17_Chr4g0049181	51.111	135	55	4	210	334	491	624	7.06e-27	115
Msa0696790	MtrunA17_Chr4g0049171	51.643	213	91	6	433	640	54	259	1.64e-53	184
Msa0696790	MtrunA17_Chr8g0337671	58.861	158	62	3	433	588	64	220	2.15e-49	182
Msa0696790	MtrunA17_Chr4g0049191	95.122	82	4	0	335	416	28	109	3.14e-49	169
Msa0696790	MtrunA17_Chr7g0249841	47.317	205	101	4	434	636	63	262	4.48e-49	181
Msa0696790	MtrunA17_Chr7g0249841	37.864	103	53	2	149	240	274	376	2.62e-11	66.6

Showing 1 to 10 of 641 entries

Previous1 2 3 4 5…65Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696790	AT5G48380.1	37.143	210	116	5	433	635	61	261	2.70e-33	135
Msa0696790	AT5G48380.1	37.143	105	51	2	162	256	288	387	7.59e-14	75.1
Msa0696790	AT3G28450.1	40.314	191	105	3	433	621	63	246	8.52e-32	131
Msa0696790	AT1G69990.1	43.226	155	87	1	434	588	51	204	4.88e-31	129
Msa0696790	AT1G27190.1	39.409	203	115	4	434	634	58	254	3.18e-26	114
Msa0696790	AT2G14580.1	52.222	90	42	1	326	415	23	111	1.11e-25	103
Msa0696790	AT4G33720.1	56.471	85	36	1	335	419	32	115	2.17e-25	103
Msa0696790	AT1G50060.1	55.056	89	40	0	327	415	21	109	4.88e-25	102
Msa0696790	AT2G14610.1	50.000	90	44	1	326	415	23	111	1.97e-24	100
Msa0696790	AT2G19990.1	56.962	79	33	1	337	415	46	123	1.00e-22	96.3

Showing 1 to 10 of 490 entries

Previous1 2 3 4 5…49Next

Find 137 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATTTCTTTAAGCC+TGG	0.434548	4_4:-66795103	None:intergenic
AAAATACGTTAAGAATTCAT+TGG	0.426594	4_4:+66788227	Msa0696790:CDS
AAAGATGGGAATGATGTACC+AGG	0.570261	4_4:+66789333	Msa0696790:CDS
AAATCTCAGACTATCTGGCA+TGG	0.565844	4_4:+66794822	Msa0696790:CDS
AACAAGGCTCGTGCCGAGGT+TGG	0.557352	4_4:+66792396	Msa0696790:CDS
AACGATTGAAGGAAATGGTT+GGG	0.416268	4_4:-66795249	None:intergenic
AAGATGGGAATGATGTACCA+GGG	0.726639	4_4:+66789334	Msa0696790:CDS
AAGCAGTTCTGAACGGCACC+TGG	0.473765	4_4:-66794862	None:intergenic
AATATGGTTAGAAGAACTCC+GGG	0.593326	4_4:+66789267	Msa0696790:CDS
AATCTCAGACTATCTGGCAT+GGG	0.524276	4_4:+66794823	Msa0696790:CDS

Showing 1 to 10 of 137 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGAGTTAAGAAGAACAAAT+TGG	-	chr4_4:66788060-66788079	None:intergenic	30.0%
TATTTGAAAAGCCATTCTTG+TGG	-	chr4_4:66788124-66788143	None:intergenic	30.0%
CCTAAACAAAGCTAAAGAAT+TGG	+	chr4_4:66788401-66788420	Msa0696790:CDS	30.0%
TAGGAATAGAGTTCAAATTG+GGG	+	chr4_4:66788620-66788639	Msa0696790:intron	30.0%
AATAGAGTGATAGTTAGAGA+GGG	-	chr4_4:66788760-66788779	None:intergenic	30.0%
AAATAGAGTGATAGTTAGAG+AGG	-	chr4_4:66788761-66788780	None:intergenic	30.0%
TGAGATCCTCTATAATCTAA+CGG	-	chr4_4:66789002-66789021	None:intergenic	30.0%
CTATTTAGATAGAGTCAACA+AGG	-	chr4_4:66789145-66789164	None:intergenic	30.0%
ATTGTCTATAGCAAAACAGT+CGG	-	chr4_4:66789299-66789318	None:intergenic	30.0%
TTGCTATAGACAATGCTATT+GGG	+	chr4_4:66789305-66789324	Msa0696790:CDS	30.0%

Showing 1 to 10 of 478 entries

Previous1 2 3 4 5…48Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	66787851	66795395	66787851	ID=Msa0696790;Name=Msa0696790
chr4_4	mRNA	66787851	66795395	66787851	ID=Msa0696790-mRNA-1;Parent=Msa0696790;Name=Msa0696790-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|0.25\|0.11\|1\|0.12\|0\|9\|0\|643
chr4_4	exon	66787851	66787957	66787851	ID=Msa0696790-mRNA-1:exon:19474;Parent=Msa0696790-mRNA-1
chr4_4	exon	66788104	66788317	66788104	ID=Msa0696790-mRNA-1:exon:19475;Parent=Msa0696790-mRNA-1
chr4_4	exon	66788387	66788524	66788387	ID=Msa0696790-mRNA-1:exon:19476;Parent=Msa0696790-mRNA-1
chr4_4	exon	66789235	66789422	66789235	ID=Msa0696790-mRNA-1:exon:19477;Parent=Msa0696790-mRNA-1
chr4_4	exon	66789453	66789530	66789453	ID=Msa0696790-mRNA-1:exon:19478;Parent=Msa0696790-mRNA-1
chr4_4	exon	66789834	66789972	66789834	ID=Msa0696790-mRNA-1:exon:19479;Parent=Msa0696790-mRNA-1
chr4_4	exon	66789991	66790129	66789991	ID=Msa0696790-mRNA-1:exon:19480;Parent=Msa0696790-mRNA-1
chr4_4	exon	66792379	66792622	66792379	ID=Msa0696790-mRNA-1:exon:19481;Parent=Msa0696790-mRNA-1
chr4_4	exon	66794714	66795395	66794714	ID=Msa0696790-mRNA-1:exon:19482;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66787851	66787957	66787851	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66788104	66788317	66788104	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66788387	66788524	66788387	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66789235	66789422	66789235	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66789453	66789530	66789453	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66789834	66789972	66789834	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66789991	66790129	66789991	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66792379	66792622	66792379	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1
chr4_4	CDS	66794714	66795395	66794714	ID=Msa0696790-mRNA-1:cds;Parent=Msa0696790-mRNA-1

Gene Sequence

>Msa0696790

TGTAGATATATAATTGTCAAAAAAAAAAATATAATTGAAAAATTTAGTAGTGAGTGTATACAAACAAGCTGCAAGACACGGGTTCTTAAACTTGTTAGCTTCATTCTTCTCAGTTTTTGTATATCCACAAGAATGGCTTTTCAAATAAAAAGGGATAATCTGTTCGCAGTATTCTTGTGCTTCGGTATGTTGATGACAATTCAGAGTTCTGAGACTGATATGCACCGTTTAAAATACGTTAAGAATTCATTGGAAGATCCGTTCAATGACAAGACCATCGATTTCCACGAATCGTTCAAGGGCGGTCTTATTGTTGGTTATAGAAAAAACAATCACCTAAACAAAGCTAAAGAATTGGGCAAATATATTTGCTCTATCACGAGCAGGAAGACACGAATGGCAACTAATCAGATGCACGAATTGTTACATCCGTGGCTGGCACGCAAAGAAATCAAGGAGATCTCTGTATTGTTGGGAAGATTGACTTCAACAATATGGTTAGAAGAACTCCGGGACACAACCGACTGTTTTGCTATAGACAATGCTATTGGGGTGGGAAAGATGGGAATGATGTACCAGGGAAATCTACCAAATGGTCAGTTACTAGCCGTTAAGAGACTATCTAACTCTCGTCTTTTTGAAAGGCAGTACAGACACAAAAATATAGTTCCCATGCTTGGATTCTGCATTGAAGGAAAGGAAAGGCTTTTGGCATATGAATACATTGTGCTCTTTGAACTGATTACAGGGAAAACATATAACGAACTGACTCGTTCATCCACCACCACTAATCTCTATGATAACCCTTCAAATTTTTATAATGCCATCGATAAATCTCTGCCCGGACAAGGATTTGAAAACGGAGTTGCTTGTGAGTGTGTTAAACCTATAAATCAAAGACCAACAATGCTTGAAGTTTACAACAATTTGAGCAATATAAGTAAGTCACAATATGTCTCTAGTGATGATTCTAATCCAACCGGTGGATCACAAATTGCTTCTGACTACCTTGACGTGCACAACAAGGCTCGTGCCGAGGTTGGCGTTGGCCCACTCGTGTGGAACGAAACCCTTGCAGCCTATGCCATGAACTATGCTAAATCGAAGCACGAAACCTGCGAAATGGTGCACTCCCAAGGGCCTTATGGCGAGAACCTTGCAGAGGGTTCCGACCCCCAAATGACTGCTGCCGCTGCTGTGAAATTATGGGTGGATGAGAAGGCCTTCTATGACTATAGTACCAACGCTCTCAGTTTTTGTATCTGCACGAGAATGGCTTTTCGACTAAATAGGGATTTCATATGTAAGTTTGATGGTGTTGAATGCTGGCAATCAAGCTATGATAGTAAAGTACAAAATCTCAGACTATCTGGCATGGGGTTGAAGGGCCAATTTCCAGGTGCCGTTCAGAACTGCTTTTCACTCGTGAGCCTAGATTTTTCATTCAATGAACTCTCAGGACCAATCCCATCTAAAATATCAAGTATACTCAAATATGTTGTTAGCTTTGATCTCTCGAATAACAAGTTCACTGGTGAAATTCCAGCATCATTAGCAAGTTATACTTACCTGAATACCCTTAAACTTAACAACAATATGTTAAGTAGTGAAATTCCAAGACAACTTGGCACGCTTACCAGGCTTAAAGAAATTTCTTTTGCTAACAACTATTTGTCAGGGCTAGTGCCTGTGTTCGCAGGAGGAGGGGTAGATTTTAACTATGCTAACAATAGCGAACTTTGTGGAGAATCTTTGAGACCTTGCTCCTTGAGACATAACAAGCCCAACCATTTCCTTCAATCGTTCAAGAGTGGTCTTATTGTTGGATATGTTTTTTCACTGACAAGTTCTGTTATGCTGACTTGTATCTTCTACTCCAAATGTGTGCAATTTAAGAAGAAGGAAAAAAAACAATCACGTAAACAAAGC

Protein sequence

>Msa0696790

CRYIIVKKKNIIEKFSSECIQTSCKTRVLKLVSFILLSFCISTRMAFQIKRDNLFAVFLCFGMLMTIQSSETDMHRLKYVKNSLEDPFNDKTIDFHESFKGGLIVGYRKNNHLNKAKELGKYICSITSRKTRMATNQMHELLHPWLARKEIKEISVLLGRLTSTIWLEELRDTTDCFAIDNAIGVGKMGMMYQGNLPNGQLLAVKRLSNSRLFERQYRHKNIVPMLGFCIEGKERLLAYEYIVLFELITGKTYNELTRSSTTTNLYDNPSNFYNAIDKSLPGQGFENGVACECVKPINQRPTMLEVYNNLSNISKSQYVSSDDSNPTGGSQIASDYLDVHNKARAEVGVGPLVWNETLAAYAMNYAKSKHETCEMVHSQGPYGENLAEGSDPQMTAAAAVKLWVDEKAFYDYSTNALSFCICTRMAFRLNRDFICKFDGVECWQSSYDSKVQNLRLSGMGLKGQFPGAVQNCFSLVSLDFSFNELSGPIPSKISSILKYVVSFDLSNNKFTGEIPASLASYTYLNTLKLNNNMLSSEIPRQLGTLTRLKEISFANNYLSGLVPVFAGGGVDFNYANNSELCGESLRPCSLRHNKPNHFLQSFKSGLIVGYVFSLTSSVMLTCIFYSKCVQFKKKEKKQSRKQS