AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0702580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702580 MtrunA17_Chr5g0441371 64.362 188 32 2 68 220 18 205 9.07e-67 214
Msa0702580 MtrunA17_Chr4g0000341 97.561 41 1 0 261 301 194 234 1.52e-18 85.9
Msa0702580 MtrunA17_Chr7g0255771 42.697 89 48 2 134 220 152 239 2.85e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702580 AT1G34460.9 33.498 203 104 8 51 224 102 302 3.77e-18 84.7
Msa0702580 AT2G26760.1 35.443 158 92 5 68 220 18 170 5.14e-18 84.0
Msa0702580 AT1G78900.1 87.805 41 5 0 261 301 193 233 7.81e-17 81.3
Msa0702580 AT1G78900.2 87.805 41 5 0 261 301 193 233 7.81e-17 81.3
Msa0702580 AT1G34460.5 35.429 175 84 7 79 224 142 316 8.85e-17 80.9
Msa0702580 AT1G34460.7 35.429 175 84 7 79 224 142 316 1.22e-16 80.5
Msa0702580 AT1G34460.6 35.429 175 84 7 79 224 142 316 1.29e-16 80.5
Msa0702580 AT1G34460.3 35.429 175 84 7 79 224 142 316 1.29e-16 80.5
Msa0702580 AT1G34460.8 35.429 175 84 7 79 224 142 316 1.29e-16 80.5
Msa0702580 AT1G34460.1 35.429 175 84 7 79 224 142 316 1.29e-16 80.5
Msa0702580 AT1G34460.2 34.857 175 82 6 79 224 142 313 3.17e-16 79.3
Msa0702580 AT1G34460.4 34.857 175 82 6 79 224 142 313 3.17e-16 79.3
Msa0702580 AT4G37490.1 43.750 80 43 1 147 224 130 209 8.38e-14 72.0
Msa0702580 AT5G06150.2 30.890 191 81 7 79 218 30 220 1.28e-13 70.9
Msa0702580 AT5G06150.1 30.890 191 81 7 79 218 30 220 2.55e-13 70.5

Find 94 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGGTTGATCACAAGATTT+TGG 0.152119 4_4:-74247055 None:intergenic
GAACATTGATTCATCTTATA+AGG 0.243622 4_4:+74247499 Msa0702580:CDS
CTTTATACAATTCTTGTATA+AGG 0.244151 4_4:-74246706 None:intergenic
TGAGAATAAGAAAAGGAATA+TGG 0.262382 4_4:+74246995 Msa0702580:CDS
GCATCAGCCATGGCTGCTTT+TGG 0.282508 4_4:+74252027 Msa0702580:three_prime_UTR
CTCATCTTAGCATTTATATC+TGG 0.296448 4_4:-74247713 None:intergenic
AAAATTATGATACCTGTAAA+TGG 0.306248 4_4:-74246605 None:intergenic
ACATCTTAAAAGCCATTTAC+AGG 0.331557 4_4:+74246593 Msa0702580:CDS
TTGTTATATCCTTCGCATAA+TGG 0.337376 4_4:+74251993 Msa0702580:three_prime_UTR
GCCGATACTCCTCTTCTTAC+TGG 0.357840 4_4:+74248600 Msa0702580:CDS
CAAATGTACCTTGTTCTTCT+CGG 0.360513 4_4:-74247252 None:intergenic
TTGTTGCAGGGCTCAGTTAG+AGG 0.361146 4_4:+74247211 Msa0702580:intron
TAGAGTTGTGCCCAAGGATT+TGG 0.364250 4_4:+74247472 Msa0702580:CDS
TCATCAGAAGAACGCTTTGC+GGG 0.383815 4_4:-74251808 None:intergenic
TACCTTGTTCTTCTCGGTTG+CGG 0.393742 4_4:-74247246 None:intergenic
TCAGCACCTTGTGAGGCATT+TGG 0.410825 4_4:-74247105 None:intergenic
GTGATCAACCCGGCAGATCT+TGG 0.415654 4_4:+74247065 Msa0702580:CDS
TTTAATTTCTTTGCCCAACT+TGG 0.419752 4_4:-74251887 None:intergenic
AAAATACCCAAGGATGAAAC+TGG 0.424434 4_4:-74251919 None:intergenic
GAGAATAAGAAAAGGAATAT+GGG 0.425859 4_4:+74246996 Msa0702580:CDS
ATATGATACAAAGAGTAATC+TGG 0.431534 4_4:-74252211 None:intergenic
ATGAGGGTGATGGAGATTCC+AGG 0.435593 4_4:+74246558 Msa0702580:CDS
AATGTTCTCAACCAAATCCT+TGG 0.445831 4_4:-74247483 None:intergenic
AAGATCCTCACTTACATCCT+TGG 0.447048 4_4:-74251148 None:intergenic
GCTAGCAGAATCATAATTGA+AGG 0.450621 4_4:+74246240 Msa0702580:CDS
TACTCCTCTTCTTACTGGTC+AGG 0.451031 4_4:+74248605 Msa0702580:CDS
CTGGATGACTCTATAAGTTA+TGG 0.451615 4_4:-74247981 None:intergenic
GAGGACACTAGAGTGGGAAT+TGG 0.456363 4_4:+74246200 Msa0702580:CDS
ATCACCCTCATCAAACGCTT+TGG 0.464468 4_4:-74246546 None:intergenic
AAGTGACCAGTTTCATCCTT+GGG 0.464945 4_4:+74251913 Msa0702580:three_prime_UTR
TGAGATCAATTCTTATTGAC+TGG 0.470841 4_4:+74247732 Msa0702580:CDS
TCCTTGGATAAGAGCCGCTC+TGG 0.474125 4_4:-74251132 None:intergenic
TTTCTTGGTGGCCTTGAGCA+TGG 0.482520 4_4:+74248365 Msa0702580:CDS
AGATGTTCCAAAGTGAGTCC+TGG 0.483831 4_4:-74246576 None:intergenic
AAAGAAGTTCACCATGCCTC+AGG 0.486057 4_4:+74248439 Msa0702580:CDS
TGTGCAATCACTGCAACAAC+AGG 0.487175 4_4:+74250335 Msa0702580:three_prime_UTR
GCATTAGCACCAAGATCTGC+CGG 0.492988 4_4:-74247074 None:intergenic
TTCATCAGAAGAACGCTTTG+CGG 0.499048 4_4:-74251809 None:intergenic
ATGTAGACTAATAATAAGAA+TGG 0.500817 4_4:+74247421 Msa0702580:CDS
TGTTCGTGTGCATGATTACA+TGG 0.502047 4_4:+74247682 Msa0702580:CDS
GAAGTGACCAGTTTCATCCT+TGG 0.503118 4_4:+74251912 Msa0702580:three_prime_UTR
GGAGATTCCAGGACTCACTT+TGG 0.503348 4_4:+74246569 Msa0702580:CDS
GCATGTTCCACCCTTGCTGC+AGG 0.503352 4_4:-74247389 None:intergenic
CAATGAGTGGAAGCTCAGTC+AGG 0.503878 4_4:-74249936 None:intergenic
AAATTTCATAAGCAAAGAGC+TGG 0.505500 4_4:-74248000 None:intergenic
TGGCGGAAGAAAACTGTGTC+AGG 0.509632 4_4:-74251867 None:intergenic
GAATAAATATGTTATGCTGC+AGG 0.509686 4_4:-74249900 None:intergenic
AATTTCTTTGCCCAACTTGG+CGG 0.517688 4_4:-74251884 None:intergenic
ATGTTCTCAACCAAATCCTT+GGG 0.520528 4_4:-74247482 None:intergenic
TTATCTCCTCATGTTGTGAA+TGG 0.521527 4_4:+74251050 Msa0702580:three_prime_UTR
ACAGGCCTCGGTGTACGTAC+AGG 0.529911 4_4:-74248561 None:intergenic
CATTGTTCCTGCAGCAAGGG+TGG 0.537294 4_4:+74247382 Msa0702580:CDS
AAACTGTGTCAGGTTACAAT+CGG 0.540666 4_4:-74251857 None:intergenic
GTTTGATAGTTGAACTGCCA+TGG 0.541365 4_4:+74251108 Msa0702580:three_prime_UTR
CACTAGAGTGGGAATTGGCA+AGG 0.548048 4_4:+74246205 Msa0702580:CDS
ATAAGAGCCGCTCTGGTCCA+TGG 0.552906 4_4:-74251125 None:intergenic
GTGTTGGAACTTGAGTTTCA+AGG 0.559419 4_4:+74248410 Msa0702580:CDS
AGAATAAGAAAAGGAATATG+GGG 0.559606 4_4:+74246997 Msa0702580:CDS
CACCTAACCAAAAGCAGCCA+TGG 0.562153 4_4:-74252034 None:intergenic
ACCAGTAAGAAGAGGAGTAT+CGG 0.562952 4_4:-74248601 None:intergenic
AGAACATTGTTCCTGCAGCA+AGG 0.565140 4_4:+74247378 Msa0702580:intron
TGCTTGTAGAGTTGTGCCCA+AGG 0.568487 4_4:+74247466 Msa0702580:CDS
TTCCTCTCTTACCATGCTCA+AGG 0.571680 4_4:-74248376 None:intergenic
TTGCGAAGTTATTTGATCTG+CGG 0.573378 4_4:+74251964 Msa0702580:three_prime_UTR
GAACATTGTTCCTGCAGCAA+GGG 0.574930 4_4:+74247379 Msa0702580:intron
GAGGAGAGAGGACACTAGAG+TGG 0.575461 4_4:+74246193 Msa0702580:CDS
AGCTCAGTCAGGTATGTGAC+TGG 0.576186 4_4:-74249925 None:intergenic
GGCCTTGAGCATGGTAAGAG+AGG 0.580399 4_4:+74248374 Msa0702580:CDS
AAAGCGTTTGATGAGGGTGA+TGG 0.580444 4_4:+74246548 Msa0702580:CDS
CATTAGCACCAAGATCTGCC+GGG 0.580889 4_4:-74247073 None:intergenic
AATTAGGTGAGAATAAGAAA+AGG 0.583677 4_4:+74246988 Msa0702580:intron
AATAACTTCGCAAGATACAA+TGG 0.587194 4_4:-74251954 None:intergenic
CAACACCAAAGCGTTTGATG+AGG 0.592407 4_4:+74246541 Msa0702580:CDS
TATTTATAAGTACAACAAAG+TGG 0.602644 4_4:-74252129 None:intergenic
AGGAGAGAGGACACTAGAGT+GGG 0.604291 4_4:+74246194 Msa0702580:CDS
TATGGAATCAGCACCTTGTG+AGG 0.606345 4_4:-74247112 None:intergenic
AACACCAAAGCGTTTGATGA+GGG 0.608391 4_4:+74246542 Msa0702580:CDS
CTTACCTGACCAGTAAGAAG+AGG 0.608391 4_4:-74248609 None:intergenic
ACCAGAGCGGCTCTTATCCA+AGG 0.610602 4_4:+74251131 Msa0702580:three_prime_UTR
CCAAAATCTTGTGATCAACC+CGG 0.612472 4_4:+74247055 Msa0702580:CDS
TCACATCCATTCACAACATG+AGG 0.614060 4_4:-74251056 None:intergenic
AATCAAAAGCCATTATGCGA+AGG 0.618602 4_4:-74252002 None:intergenic
ATCACTGCAACAACAGGTTG+AGG 0.619338 4_4:+74250341 Msa0702580:three_prime_UTR
AGCCGCAACCGAGAAGAACA+AGG 0.639614 4_4:+74247244 Msa0702580:CDS
ATAACATACAAATCAATGAG+TGG 0.640067 4_4:-74249949 None:intergenic
ATGTCACCAAATGCCTCACA+AGG 0.640555 4_4:+74247099 Msa0702580:CDS
ACTAGAGTGGGAATTGGCAA+GGG 0.655908 4_4:+74246206 Msa0702580:CDS
GTGGCCATAAACCTGAGGCA+TGG 0.663532 4_4:-74248450 None:intergenic
GGTTGAAGGAAGAAACAGAA+AGG 0.663667 4_4:+74247019 Msa0702580:CDS
GAGTAAGATTACATTCAGCA+AGG 0.663833 4_4:-74250975 None:intergenic
GAATAAGAAAAGGAATATGG+GGG 0.679741 4_4:+74246998 Msa0702580:CDS
AGATATCTGCATTATGTGTG+TGG 0.692302 4_4:-74251006 None:intergenic
TGAACTGCCATGGACCAGAG+CGG 0.740700 4_4:+74251118 Msa0702580:three_prime_UTR
GTTGGCCTGTACGTACACCG+AGG 0.801438 4_4:+74248556 Msa0702580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTCTATAAAATAATATAA+AGG + chr4_4:74250484-74250503 Msa0702580:intron 10.0%
!!! TTTGTTTTTTTTTTTTTTTG+TGG + chr4_4:74250582-74250601 Msa0702580:intron 10.0%
!!! ACTTCAATTTATTTATTTTT+TGG + chr4_4:74250804-74250823 Msa0702580:intron 10.0%
!!! AAACTTTTCATATCATAAAT+TGG - chr4_4:74246332-74246351 None:intergenic 15.0%
!!! TATGAAAAGTTTTTTATTTG+TGG + chr4_4:74246340-74246359 Msa0702580:intron 15.0%
!!! ATGAAAAGTTTTTTATTTGT+GGG + chr4_4:74246341-74246360 Msa0702580:intron 15.0%
!!! TGATTGATTTTTAATGAATT+TGG + chr4_4:74246464-74246483 Msa0702580:intron 15.0%
!! TAATTTCAATTGTAAAGTTA+TGG - chr4_4:74247133-74247152 None:intergenic 15.0%
!! CAATAAAAACAAATAAAATC+AGG - chr4_4:74247191-74247210 None:intergenic 15.0%
!! GATTTGTAGAAAATATTAAA+GGG + chr4_4:74248093-74248112 Msa0702580:intron 15.0%
!!! ACAATTTTTTTCATTAAAAC+GGG - chr4_4:74248341-74248360 None:intergenic 15.0%
!!! CACAATTTTTTTCATTAAAA+CGG - chr4_4:74248342-74248361 None:intergenic 15.0%
!! TGTATATTAAGTTATAATGA+AGG - chr4_4:74248517-74248536 None:intergenic 15.0%
!! TCATTATAACTTAATATACA+TGG + chr4_4:74248517-74248536 Msa0702580:intron 15.0%
!!! GAAAAGATTTTACTAAATTA+CGG + chr4_4:74249835-74249854 Msa0702580:intron 15.0%
!!! AAAAGATTTTACTAAATTAC+GGG + chr4_4:74249836-74249855 Msa0702580:intron 15.0%
!!! ATTTTCAACATATTTATTTC+TGG + chr4_4:74250070-74250089 Msa0702580:intron 15.0%
!!! ATTTCTGGTTTTTTTTTTTT+TGG + chr4_4:74250085-74250104 Msa0702580:intron 15.0%
!!! TTCTTTTCTTATTAGATAAA+TGG + chr4_4:74250279-74250298 Msa0702580:intron 15.0%
!! TAATTTATTACTACTATTCA+AGG + chr4_4:74250397-74250416 Msa0702580:intron 15.0%
!! AAATACTTCAATTTAGTTAA+TGG + chr4_4:74250833-74250852 Msa0702580:intron 15.0%
!!! TGTTTTCATTATATTCTTAA+AGG + chr4_4:74251474-74251493 Msa0702580:intron 15.0%
!! AAAATTATGATACCTGTAAA+TGG - chr4_4:74246608-74246627 None:intergenic 20.0%
!! CTTTATACAATTCTTGTATA+AGG - chr4_4:74246709-74246728 None:intergenic 20.0%
!!! ATTAATTTGTTCTGTGTATA+TGG + chr4_4:74246773-74246792 Msa0702580:intron 20.0%
!!! TTAATTTGTTCTGTGTATAT+GGG + chr4_4:74246774-74246793 Msa0702580:intron 20.0%
!!! TGATTTATGCTTTTTGTTAA+TGG + chr4_4:74246965-74246984 Msa0702580:intron 20.0%
!! TTATAAAGATATACAACATG+TGG - chr4_4:74247164-74247183 None:intergenic 20.0%
!! TTTAGTGATACAATGTATTA+AGG - chr4_4:74247327-74247346 None:intergenic 20.0%
!!! TATCACTAAATTTGTTTTGA+TGG + chr4_4:74247337-74247356 Msa0702580:intron 20.0%
!! ATGTAGACTAATAATAAGAA+TGG + chr4_4:74247421-74247440 Msa0702580:CDS 20.0%
!!! CTTTGCTTATGAAATTTTTA+AGG + chr4_4:74248006-74248025 Msa0702580:CDS 20.0%
!! ATTTATTATATCACATGTTC+AGG + chr4_4:74248053-74248072 Msa0702580:intron 20.0%
!! GGATTTGTAGAAAATATTAA+AGG + chr4_4:74248092-74248111 Msa0702580:intron 20.0%
!!! CGTTTTAATGAAAAAAATTG+TGG + chr4_4:74248340-74248359 Msa0702580:CDS 20.0%
!! TTAAGTTATAATGAAGGATA+AGG - chr4_4:74248511-74248530 None:intergenic 20.0%
!! AGTGAAGGATTTATATTTAT+TGG + chr4_4:74248688-74248707 Msa0702580:intron 20.0%
!! ATTTCATTATGTAGTCTAAT+TGG - chr4_4:74249569-74249588 None:intergenic 20.0%
!!! ATGATTTATTCTTTTCATCA+GGG + chr4_4:74249673-74249692 Msa0702580:intron 20.0%
!! CAGCAAAATTATTATAAGAA+AGG - chr4_4:74249700-74249719 None:intergenic 20.0%
!!! CTTTCTTATAATAATTTTGC+TGG + chr4_4:74249698-74249717 Msa0702580:intron 20.0%
!!! AATCTTTTCTTAGTATAAGA+CGG - chr4_4:74249824-74249843 None:intergenic 20.0%
!! AAATATGTTGAAAATGTTGT+AGG - chr4_4:74250065-74250084 None:intergenic 20.0%
!!! TTAATACTTTAAAGATTGCA+AGG - chr4_4:74250380-74250399 None:intergenic 20.0%
!! AATATTACATCTGATAGAAA+AGG - chr4_4:74250731-74250750 None:intergenic 20.0%
!!! CTAAAGTGTATAATTTTCTT+TGG - chr4_4:74251364-74251383 None:intergenic 20.0%
!!! ATAATTAGTATCGAACATAT+AGG - chr4_4:74251629-74251648 None:intergenic 20.0%
!!! AAGTAATAGTTTTCATATAG+TGG - chr4_4:74251678-74251697 None:intergenic 20.0%
!! TATTTATAAGTACAACAAAG+TGG - chr4_4:74252132-74252151 None:intergenic 20.0%
!!! TGGTTTTAGCATAAATTTTC+AGG + chr4_4:74246171-74246190 Msa0702580:intron 25.0%
!!! TTTTAGCATAAATTTTCAGG+AGG + chr4_4:74246174-74246193 Msa0702580:intron 25.0%
!!! GATAAGTTTTATGTGTATGT+TGG + chr4_4:74246374-74246393 Msa0702580:intron 25.0%
! GTTTAAATTAGTGATTTCCT+GGG + chr4_4:74246401-74246420 Msa0702580:intron 25.0%
!! TTTTTCATACTATGCATATG+TGG + chr4_4:74246512-74246531 Msa0702580:intron 25.0%
!!! TTTGAGCTTATTTGATTTTC+TGG + chr4_4:74246659-74246678 Msa0702580:intron 25.0%
!!! AGATTTTGAAATGAAATCTG+AGG + chr4_4:74246813-74246832 Msa0702580:intron 25.0%
!!! GATTTTGAAATGAAATCTGA+GGG + chr4_4:74246814-74246833 Msa0702580:intron 25.0%
! TTAGGGTTTATGTAATAATC+TGG + chr4_4:74246852-74246871 Msa0702580:intron 25.0%
!!! TGCTTTTTGTTAATGGAATT+AGG + chr4_4:74246972-74246991 Msa0702580:intron 25.0%
! AATTAGGTGAGAATAAGAAA+AGG + chr4_4:74246988-74247007 Msa0702580:intron 25.0%
! TGAGAATAAGAAAAGGAATA+TGG + chr4_4:74246995-74247014 Msa0702580:CDS 25.0%
! GAGAATAAGAAAAGGAATAT+GGG + chr4_4:74246996-74247015 Msa0702580:CDS 25.0%
! AGAATAAGAAAAGGAATATG+GGG + chr4_4:74246997-74247016 Msa0702580:CDS 25.0%
!!! TTTGTTTTTATTGTTGTTGC+AGG + chr4_4:74247198-74247217 Msa0702580:intron 25.0%
!!! TTGTTTTTATTGTTGTTGCA+GGG + chr4_4:74247199-74247218 Msa0702580:intron 25.0%
!! TTACTTTGTTCCATTTTCAA+AGG + chr4_4:74247293-74247312 Msa0702580:intron 25.0%
!!! GAACATTGATTCATCTTATA+AGG + chr4_4:74247499-74247518 Msa0702580:CDS 25.0%
! TATTTATTGCCCATATTAGA+TGG + chr4_4:74247812-74247831 Msa0702580:intron 25.0%
!! TTTTGTCAAAAAAGATATGC+AGG + chr4_4:74247873-74247892 Msa0702580:intron 25.0%
! GTGATATAATAAATTCGTGA+AGG - chr4_4:74248047-74248066 None:intergenic 25.0%
! TAATAACAGTTCTCATTGAA+AGG + chr4_4:74248192-74248211 Msa0702580:intron 25.0%
! CTTTACAAAAAGAAAGAAAG+TGG - chr4_4:74248245-74248264 None:intergenic 25.0%
!! AAAAAAATTGTGGCTTTTCT+TGG + chr4_4:74248350-74248369 Msa0702580:CDS 25.0%
! TCAATCAAGCAACTAAAAAA+GGG - chr4_4:74248476-74248495 None:intergenic 25.0%
! TTCAATCAAGCAACTAAAAA+AGG - chr4_4:74248477-74248496 None:intergenic 25.0%
!! GATTTATATTTATTGGCTGT+TGG + chr4_4:74248695-74248714 Msa0702580:intron 25.0%
! TGAATGAAATATCATCAAAG+TGG - chr4_4:74249006-74249025 None:intergenic 25.0%
!! TTGATGATATTTCATTCAAG+TGG + chr4_4:74249008-74249027 Msa0702580:intron 25.0%
! TGTTATCCTAATTAAGCATA+AGG + chr4_4:74249099-74249118 Msa0702580:intron 25.0%
! GTTATCCTAATTAAGCATAA+GGG + chr4_4:74249100-74249119 Msa0702580:intron 25.0%
! ACAAAAAATGACGATTATGT+GGG - chr4_4:74249452-74249471 None:intergenic 25.0%
!!! ACATAATCGTCATTTTTTGT+CGG + chr4_4:74249452-74249471 Msa0702580:intron 25.0%
!!! ATTTTTTGTCGGAAATACAT+GGG + chr4_4:74249463-74249482 Msa0702580:intron 25.0%
! TAATGAAATTAGACTGAATC+AGG + chr4_4:74249580-74249599 Msa0702580:intron 25.0%
!! GATGATTTATTCTTTTCATC+AGG + chr4_4:74249672-74249691 Msa0702580:intron 25.0%
! AAATAAAGGAAACAGAATGA+GGG - chr4_4:74249791-74249810 None:intergenic 25.0%
! ACGGAATGAAAATCAAATAA+AGG - chr4_4:74249805-74249824 None:intergenic 25.0%
!!! TGTTGATTTGATCTATAATG+TGG + chr4_4:74249862-74249881 Msa0702580:intron 25.0%
! ATAACATACAAATCAATGAG+TGG - chr4_4:74249952-74249971 None:intergenic 25.0%
!!! GTTTTTTTTTTTTTGGAGTG+AGG + chr4_4:74250092-74250111 Msa0702580:intron 25.0%
!!! TAATGTGCAAGATATTTTTG+CGG + chr4_4:74250120-74250139 Msa0702580:intron 25.0%
!!! GTTTTAAAAACACATCAAGA+AGG - chr4_4:74250171-74250190 None:intergenic 25.0%
! CTAAAAGAGATAGCAAATTA+AGG - chr4_4:74250221-74250240 None:intergenic 25.0%
!! GTTAATTTTTCTGATGTCTT+CGG + chr4_4:74250255-74250274 Msa0702580:intron 25.0%
!! TGCATATCCTTAATTTGATT+GGG - chr4_4:74250902-74250921 None:intergenic 25.0%
!! ATGCATATCCTTAATTTGAT+TGG - chr4_4:74250903-74250922 None:intergenic 25.0%
!!! ATTTTAATTTTGCCTTCCAT+AGG + chr4_4:74250949-74250968 Msa0702580:intron 25.0%
! AAAAGATGCAACTTATTATC+TGG + chr4_4:74251385-74251404 Msa0702580:intron 25.0%
! ATGATTGATGTTATGAAAGT+TGG - chr4_4:74251434-74251453 None:intergenic 25.0%
! TTTCATAACATCAATCATCT+TGG + chr4_4:74251436-74251455 Msa0702580:intron 25.0%
! ATATGATACAAAGAGTAATC+TGG - chr4_4:74252214-74252233 None:intergenic 25.0%
GGTTTATCTATACAGTAACA+TGG + chr4_4:74246151-74246170 Msa0702580:intron 30.0%
GGTTTAAATTAGTGATTTCC+TGG + chr4_4:74246400-74246419 Msa0702580:intron 30.0%
ACATCTTAAAAGCCATTTAC+AGG + chr4_4:74246593-74246612 Msa0702580:CDS 30.0%
! GCTCAAACTCTTATAGTTTT+TGG - chr4_4:74246646-74246665 None:intergenic 30.0%
ACAAAAAATTCAACGTGAGA+TGG - chr4_4:74246752-74246771 None:intergenic 30.0%
GGTGGTTTAGTTAAGTATTA+GGG + chr4_4:74246835-74246854 Msa0702580:intron 30.0%
GAAAATGTTTAGTGAATCCA+CGG + chr4_4:74246874-74246893 Msa0702580:intron 30.0%
AAAATGTTTAGTGAATCCAC+GGG + chr4_4:74246875-74246894 Msa0702580:intron 30.0%
AGCAGAAAAATGTACAACAA+AGG - chr4_4:74246906-74246925 None:intergenic 30.0%
! TGTTGTACATTTTTCTGCTA+TGG + chr4_4:74246907-74246926 Msa0702580:intron 30.0%
GAATAAGAAAAGGAATATGG+GGG + chr4_4:74246998-74247017 Msa0702580:CDS 30.0%
CTCATCTTAGCATTTATATC+TGG - chr4_4:74247716-74247735 None:intergenic 30.0%
TGAGATCAATTCTTATTGAC+TGG + chr4_4:74247732-74247751 Msa0702580:CDS 30.0%
GATCCAAATCCATCTAATAT+GGG - chr4_4:74247824-74247843 None:intergenic 30.0%
AGATCCAAATCCATCTAATA+TGG - chr4_4:74247825-74247844 None:intergenic 30.0%
AAATTTCATAAGCAAAGAGC+TGG - chr4_4:74248003-74248022 None:intergenic 30.0%
! TCAGGTCTAAGTTATACTTT+TGG + chr4_4:74248071-74248090 Msa0702580:intron 30.0%
!! CTCAAAAAAAGTTGATGTCA+TGG - chr4_4:74248172-74248191 None:intergenic 30.0%
CAATCAAGCAACTAAAAAAG+GGG - chr4_4:74248475-74248494 None:intergenic 30.0%
TAGTTGCTTGATTGAAGTAT+TGG + chr4_4:74248481-74248500 Msa0702580:intron 30.0%
TGTTAAAATATGTTCGTGTC+AGG + chr4_4:74248794-74248813 Msa0702580:intron 30.0%
GTTAAAATATGTTCGTGTCA+GGG + chr4_4:74248795-74248814 Msa0702580:intron 30.0%
ATCTGCAGGTAAACAATTAT+AGG + chr4_4:74248877-74248896 Msa0702580:intron 30.0%
TATTCTATCTGGCTATTCTA+AGG - chr4_4:74249428-74249447 None:intergenic 30.0%
GACAAAAAATGACGATTATG+TGG - chr4_4:74249453-74249472 None:intergenic 30.0%
!!! CATTTTTTGTCGGAAATACA+TGG + chr4_4:74249462-74249481 Msa0702580:intron 30.0%
TAGAATTCAGAAGCCAAAAA+AGG + chr4_4:74249492-74249511 Msa0702580:intron 30.0%
!!! TCCAAAACAACATCCTTTTT+TGG - chr4_4:74249508-74249527 None:intergenic 30.0%
AAGATACTTACAATCTACCA+AGG - chr4_4:74249757-74249776 None:intergenic 30.0%
AATAAAGGAAACAGAATGAG+GGG - chr4_4:74249790-74249809 None:intergenic 30.0%
CAAATAAAGGAAACAGAATG+AGG - chr4_4:74249792-74249811 None:intergenic 30.0%
TATAATGTGGTACTTATTGC+AGG + chr4_4:74249875-74249894 Msa0702580:intron 30.0%
GAATAAATATGTTATGCTGC+AGG - chr4_4:74249903-74249922 None:intergenic 30.0%
ATTCAGGAAAATCTGTTTAG+TGG + chr4_4:74250033-74250052 Msa0702580:intron 30.0%
TTTGCAGTAAGATGAATATG+TGG + chr4_4:74250618-74250637 Msa0702580:intron 30.0%
TTGCAGTAAGATGAATATGT+GGG + chr4_4:74250619-74250638 Msa0702580:intron 30.0%
! GCATATCCTTAATTTGATTG+GGG - chr4_4:74250901-74250920 None:intergenic 30.0%
ATCATACAGATTTAACTCCT+TGG + chr4_4:74251172-74251191 Msa0702580:intron 30.0%
ATTCGGACACATTTATGATT+TGG - chr4_4:74251284-74251303 None:intergenic 30.0%
TTGCGTATTAGCAATAATAG+AGG + chr4_4:74251500-74251519 Msa0702580:intron 30.0%
! CTTTTGTCAAAATTCTACTG+TGG + chr4_4:74251566-74251585 Msa0702580:intron 30.0%
GATAATGATTCGAAACAGTT+TGG + chr4_4:74251775-74251794 Msa0702580:intron 30.0%
! TTTAATTTCTTTGCCCAACT+TGG - chr4_4:74251890-74251909 None:intergenic 30.0%
!!! TTTCATCCTTGGGTATTTTT+TGG + chr4_4:74251923-74251942 Msa0702580:three_prime_UTR 30.0%
TATCTTCCAAAAAATACCCA+AGG - chr4_4:74251932-74251951 None:intergenic 30.0%
AATAACTTCGCAAGATACAA+TGG - chr4_4:74251957-74251976 None:intergenic 30.0%
TTGTTATATCCTTCGCATAA+TGG + chr4_4:74251993-74252012 Msa0702580:three_prime_UTR 30.0%
TGCACAGTGAAAAAGAAAAG+AGG + chr4_4:74246026-74246045 Msa0702580:CDS 35.0%
! TGTTATGACCACTTGCATTT+TGG + chr4_4:74246098-74246117 Msa0702580:intron 35.0%
AAGTTAGTCCAAAATGCAAG+TGG - chr4_4:74246109-74246128 None:intergenic 35.0%
! TGCATGACTTTTGTATCTAC+TGG + chr4_4:74246130-74246149 Msa0702580:intron 35.0%
!! ATAAATTTTCAGGAGGAGAG+AGG + chr4_4:74246181-74246200 Msa0702580:intron 35.0%
GCTAGCAGAATCATAATTGA+AGG + chr4_4:74246240-74246259 Msa0702580:CDS 35.0%
!! TTTTTATTTGTGGGCTGAAC+AGG + chr4_4:74246350-74246369 Msa0702580:intron 35.0%
! GTTTTATGTGTATGTTGGTC+AGG + chr4_4:74246379-74246398 Msa0702580:intron 35.0%
AACTTATCATCAACAAACCC+AGG - chr4_4:74246421-74246440 None:intergenic 35.0%
! TTTGAAATGAAATCTGAGGG+TGG + chr4_4:74246817-74246836 Msa0702580:intron 35.0%
GGGTGGTTTAGTTAAGTATT+AGG + chr4_4:74246834-74246853 Msa0702580:intron 35.0%
CAAATGTACCTTGTTCTTCT+CGG - chr4_4:74247255-74247274 None:intergenic 35.0%
! GGAAACACAACCTTTGAAAA+TGG - chr4_4:74247306-74247325 None:intergenic 35.0%
ATGTTCTCAACCAAATCCTT+GGG - chr4_4:74247485-74247504 None:intergenic 35.0%
AATGTTCTCAACCAAATCCT+TGG - chr4_4:74247486-74247505 None:intergenic 35.0%
TTGACTTTGATGAATGACAC+AGG + chr4_4:74247655-74247674 Msa0702580:intron 35.0%
! TTGCCCATATTAGATGGATT+TGG + chr4_4:74247818-74247837 Msa0702580:intron 35.0%
ATGCAGGCAATAACAATGAT+AGG + chr4_4:74247889-74247908 Msa0702580:intron 35.0%
TGCAGGCAATAACAATGATA+GGG + chr4_4:74247890-74247909 Msa0702580:intron 35.0%
ACAATGATAGGGAATGAAGA+AGG + chr4_4:74247901-74247920 Msa0702580:intron 35.0%
CTGGATGACTCTATAAGTTA+TGG - chr4_4:74247984-74248003 None:intergenic 35.0%
! AAAATTGTGGCTTTTCTTGG+TGG + chr4_4:74248353-74248372 Msa0702580:CDS 35.0%
! AGGAAAGTTTTGCATTGTGT+TGG + chr4_4:74248394-74248413 Msa0702580:CDS 35.0%
TGGTCTCCTATATTTCTTCT+TGG + chr4_4:74248715-74248734 Msa0702580:intron 35.0%
GGTTCACCAAGAAGAAATAT+AGG - chr4_4:74248724-74248743 None:intergenic 35.0%
GGTAATATGAAGGAATGACA+TGG - chr4_4:74248850-74248869 None:intergenic 35.0%
GATGACATTGGGTAATATGA+AGG - chr4_4:74248860-74248879 None:intergenic 35.0%
TGACTAAAACTACCTCTCAT+CGG + chr4_4:74248969-74248988 Msa0702580:intron 35.0%
CACATCCCTTATGCTTAATT+AGG - chr4_4:74249108-74249127 None:intergenic 35.0%
! ACACACACTATTGTTCTAGA+TGG + chr4_4:74249280-74249299 Msa0702580:intron 35.0%
TTCAAGTGATAGGATTCTGA+AGG + chr4_4:74249371-74249390 Msa0702580:intron 35.0%
! ATTATGTGGGCTATTCTATC+TGG - chr4_4:74249439-74249458 None:intergenic 35.0%
!! GCCAAAAAAGGATGTTGTTT+TGG + chr4_4:74249504-74249523 Msa0702580:intron 35.0%
! AAAGTGAGGCATCAAAGTTT+AGG + chr4_4:74249605-74249624 Msa0702580:intron 35.0%
! CTTAGTCTTTCAACTCACAT+AGG + chr4_4:74249650-74249669 Msa0702580:intron 35.0%
ATCAAGGAACCAAATGAACT+TGG - chr4_4:74249731-74249750 None:intergenic 35.0%
! TTTGGTTCCTTGATAAACCT+TGG + chr4_4:74249737-74249756 Msa0702580:intron 35.0%
CAATCTACCAAGGTTTATCA+AGG - chr4_4:74249747-74249766 None:intergenic 35.0%
! TTTTTCTTCCAGCAACATTC+AGG + chr4_4:74250017-74250036 Msa0702580:intron 35.0%
! TGGAAATGAGTCGGTATTTT+GGG - chr4_4:74250193-74250212 None:intergenic 35.0%
GATAGCAAATTAAGGAATCC+TGG - chr4_4:74250213-74250232 None:intergenic 35.0%
AACACCAACGGAAATGAAAA+AGG + chr4_4:74250456-74250475 Msa0702580:intron 35.0%
ACACCAACGGAAATGAAAAA+GGG + chr4_4:74250457-74250476 Msa0702580:intron 35.0%
!! TTTCCCTTTTTCATTTCCGT+TGG - chr4_4:74250463-74250482 None:intergenic 35.0%
TGCAGTAAGATGAATATGTG+GGG + chr4_4:74250620-74250639 Msa0702580:intron 35.0%
ATAATGCACAATATGTGCAG+GGG - chr4_4:74250667-74250686 None:intergenic 35.0%
GATAATGCACAATATGTGCA+GGG - chr4_4:74250668-74250687 None:intergenic 35.0%
GTATGACCCCAATCAAATTA+AGG + chr4_4:74250892-74250911 Msa0702580:intron 35.0%
GAGTAAGATTACATTCAGCA+AGG - chr4_4:74250978-74250997 None:intergenic 35.0%
AGATATCTGCATTATGTGTG+TGG - chr4_4:74251009-74251028 None:intergenic 35.0%
TTATCTCCTCATGTTGTGAA+TGG + chr4_4:74251050-74251069 Msa0702580:three_prime_UTR 35.0%
AAGTGAATAGTTCACTTCCA+AGG - chr4_4:74251192-74251211 None:intergenic 35.0%
TGGAAGTGAACTATTCACTT+TGG + chr4_4:74251192-74251211 Msa0702580:intron 35.0%
AAGTGAACTATTCACTTTGG+AGG + chr4_4:74251195-74251214 Msa0702580:intron 35.0%
AGTGAACTATTCACTTTGGA+GGG + chr4_4:74251196-74251215 Msa0702580:intron 35.0%
ATGAGACCATGACTGATATT+CGG - chr4_4:74251301-74251320 None:intergenic 35.0%
! AGTATCGAACATATAGGTGT+AGG - chr4_4:74251623-74251642 None:intergenic 35.0%
! AGAAAGATTGCTGTTGCAAT+GGG - chr4_4:74251744-74251763 None:intergenic 35.0%
! AAGAAAGATTGCTGTTGCAA+TGG - chr4_4:74251745-74251764 None:intergenic 35.0%
AAACTGTGTCAGGTTACAAT+CGG - chr4_4:74251860-74251879 None:intergenic 35.0%
AAAATACCCAAGGATGAAAC+TGG - chr4_4:74251922-74251941 None:intergenic 35.0%
TTGCGAAGTTATTTGATCTG+CGG + chr4_4:74251964-74251983 Msa0702580:three_prime_UTR 35.0%
AATCAAAAGCCATTATGCGA+AGG - chr4_4:74252005-74252024 None:intergenic 35.0%
!!! TTTTGATTTTGCATCAGCCA+TGG + chr4_4:74252017-74252036 Msa0702580:three_prime_UTR 35.0%
CAGATTTCTGAGTTGCAAGT+AGG + chr4_4:74246062-74246081 Msa0702580:intron 40.0%
ATACTATGCATATGTGGCAG+AGG + chr4_4:74246518-74246537 Msa0702580:intron 40.0%
! AACACCAAAGCGTTTGATGA+GGG + chr4_4:74246542-74246561 Msa0702580:CDS 40.0%
AAAAGGAATATGGGGGTTGA+AGG + chr4_4:74247005-74247024 Msa0702580:CDS 40.0%
GGTTGAAGGAAGAAACAGAA+AGG + chr4_4:74247019-74247038 Msa0702580:CDS 40.0%
CCAAAATCTTGTGATCAACC+CGG + chr4_4:74247055-74247074 Msa0702580:CDS 40.0%
TGTTCGTGTGCATGATTACA+TGG + chr4_4:74247682-74247701 Msa0702580:CDS 40.0%
ACTGGTTGATTGAAGTGTAC+AGG + chr4_4:74247750-74247769 Msa0702580:intron 40.0%
CAGGAAATTTGAACTCATGC+TGG + chr4_4:74247769-74247788 Msa0702580:intron 40.0%
GTTTGCATCGCTACGTATTA+GGG + chr4_4:74247958-74247977 Msa0702580:intron 40.0%
AAACGATTACCTCTCTGTTG+TGG + chr4_4:74248119-74248138 Msa0702580:intron 40.0%
AACGATTACCTCTCTGTTGT+GGG + chr4_4:74248120-74248139 Msa0702580:intron 40.0%
GTGTTGGAACTTGAGTTTCA+AGG + chr4_4:74248410-74248429 Msa0702580:CDS 40.0%
TCAAGCAACTAAAAAAGGGG+TGG - chr4_4:74248472-74248491 None:intergenic 40.0%
! GGTGTACCAATTTTCAGAGT+TGG + chr4_4:74248538-74248557 Msa0702580:intron 40.0%
! TACAGGCCAACTCTGAAAAT+TGG - chr4_4:74248547-74248566 None:intergenic 40.0%
! ACCAGTAAGAAGAGGAGTAT+CGG - chr4_4:74248604-74248623 None:intergenic 40.0%
ATCCTTCACTCAGACTACTA+AGG - chr4_4:74248678-74248697 None:intergenic 40.0%
ACACAACCAGAACTATCACT+TGG - chr4_4:74248745-74248764 None:intergenic 40.0%
! TTCTGGTTGTGTCTTTCACT+TGG + chr4_4:74248753-74248772 Msa0702580:intron 40.0%
GGATCATGAAACTCTCATTC+TGG - chr4_4:74248829-74248848 None:intergenic 40.0%
TATTACCCAATGTCATCTGC+AGG + chr4_4:74248863-74248882 Msa0702580:intron 40.0%
GTTTACCTGCAGATGACATT+GGG - chr4_4:74248871-74248890 None:intergenic 40.0%
TGTTTACCTGCAGATGACAT+TGG - chr4_4:74248872-74248891 None:intergenic 40.0%
GAATTACTAAGACCGATGAG+AGG - chr4_4:74248984-74249003 None:intergenic 40.0%
! TTGTTCTAGATGGTTACACC+TGG + chr4_4:74249290-74249309 Msa0702580:intron 40.0%
TTTCGTTGTGTCAACGTTGT+TGG + chr4_4:74249343-74249362 Msa0702580:intron 40.0%
! GTTGGCTTCTTTCAAGTGAT+AGG + chr4_4:74249361-74249380 Msa0702580:intron 40.0%
AAAAGAAATGCTCTGTCAGC+TGG + chr4_4:74249532-74249551 Msa0702580:intron 40.0%
GACTGAATCAGGAAAAAGTG+AGG + chr4_4:74249591-74249610 Msa0702580:intron 40.0%
! CAGATTTTCCTGAATGTTGC+TGG - chr4_4:74250028-74250047 None:intergenic 40.0%
TATATGCTATATCTGCGCCA+AGG - chr4_4:74250146-74250165 None:intergenic 40.0%
! CTGGAAATGAGTCGGTATTT+TGG - chr4_4:74250194-74250213 None:intergenic 40.0%
!! CAAAATACCGACTCATTTCC+AGG + chr4_4:74250192-74250211 Msa0702580:intron 40.0%
AAGGAATCCTGGAAATGAGT+CGG - chr4_4:74250202-74250221 None:intergenic 40.0%
GGATAATGCACAATATGTGC+AGG - chr4_4:74250669-74250688 None:intergenic 40.0%
GAGCTTAGCTCATTTGGTAT+GGG - chr4_4:74250690-74250709 None:intergenic 40.0%
TGAGCTTAGCTCATTTGGTA+TGG - chr4_4:74250691-74250710 None:intergenic 40.0%
TACCAAATGAGCTAAGCTCA+TGG + chr4_4:74250691-74250710 Msa0702580:intron 40.0%
ACCAAATGAGCTAAGCTCAT+GGG + chr4_4:74250692-74250711 Msa0702580:intron 40.0%
ACATTCAGCAAGGAAACCTA+TGG - chr4_4:74250968-74250987 None:intergenic 40.0%
TCACATCCATTCACAACATG+AGG - chr4_4:74251059-74251078 None:intergenic 40.0%
! GTTTGATAGTTGAACTGCCA+TGG + chr4_4:74251108-74251127 Msa0702580:three_prime_UTR 40.0%
CTTATCCAAGGATGTAAGTG+AGG + chr4_4:74251143-74251162 Msa0702580:intron 40.0%
AAGATCCTCACTTACATCCT+TGG - chr4_4:74251151-74251170 None:intergenic 40.0%
ATGTGTCCGAATATCAGTCA+TGG + chr4_4:74251292-74251311 Msa0702580:intron 40.0%
GAATATCAGTCATGGTCTCA+TGG + chr4_4:74251300-74251319 Msa0702580:intron 40.0%
CGAACATATAGGTGTAGGAT+AGG - chr4_4:74251618-74251637 None:intergenic 40.0%
! TTGCTGTTGCAATGGGAATA+AGG - chr4_4:74251737-74251756 None:intergenic 40.0%
TTCATCAGAAGAACGCTTTG+CGG - chr4_4:74251812-74251831 None:intergenic 40.0%
AATTTCTTTGCCCAACTTGG+CGG - chr4_4:74251887-74251906 None:intergenic 40.0%
AAGTGACCAGTTTCATCCTT+GGG + chr4_4:74251913-74251932 Msa0702580:three_prime_UTR 40.0%
GCAACTCAGAAATCTGTCAC+TGG - chr4_4:74246058-74246077 None:intergenic 45.0%
ACTAGAGTGGGAATTGGCAA+GGG + chr4_4:74246206-74246225 Msa0702580:CDS 45.0%
! CAACACCAAAGCGTTTGATG+AGG + chr4_4:74246541-74246560 Msa0702580:CDS 45.0%
ATCACCCTCATCAAACGCTT+TGG - chr4_4:74246549-74246568 None:intergenic 45.0%
! AAAGCGTTTGATGAGGGTGA+TGG + chr4_4:74246548-74246567 Msa0702580:CDS 45.0%
AGATGTTCCAAAGTGAGTCC+TGG - chr4_4:74246579-74246598 None:intergenic 45.0%
ATGTTTAGTGAATCCACGGG+TGG + chr4_4:74246878-74246897 Msa0702580:intron 45.0%
!!! CCGGGTTGATCACAAGATTT+TGG - chr4_4:74247058-74247077 None:intergenic 45.0%
ATGTCACCAAATGCCTCACA+AGG + chr4_4:74247099-74247118 Msa0702580:CDS 45.0%
TATGGAATCAGCACCTTGTG+AGG - chr4_4:74247115-74247134 None:intergenic 45.0%
TACCTTGTTCTTCTCGGTTG+CGG - chr4_4:74247249-74247268 None:intergenic 45.0%
AGAACATTGTTCCTGCAGCA+AGG + chr4_4:74247378-74247397 Msa0702580:intron 45.0%
GAACATTGTTCCTGCAGCAA+GGG + chr4_4:74247379-74247398 Msa0702580:intron 45.0%
TAGAGTTGTGCCCAAGGATT+TGG + chr4_4:74247472-74247491 Msa0702580:CDS 45.0%
AGGCATTCGAGGTTACTTGA+AGG + chr4_4:74247921-74247940 Msa0702580:intron 45.0%
GGCATTCGAGGTTACTTGAA+GGG + chr4_4:74247922-74247941 Msa0702580:intron 45.0%
CTTGAAGGGTAACGTACCAT+AGG + chr4_4:74247936-74247955 Msa0702580:intron 45.0%
TACGTAGCGATGCAAACCTA+TGG - chr4_4:74247955-74247974 None:intergenic 45.0%
GGTTTGCATCGCTACGTATT+AGG + chr4_4:74247957-74247976 Msa0702580:intron 45.0%
TTCCTCTCTTACCATGCTCA+AGG - chr4_4:74248379-74248398 None:intergenic 45.0%
AAAGAAGTTCACCATGCCTC+AGG + chr4_4:74248439-74248458 Msa0702580:CDS 45.0%
TTCACCATGCCTCAGGTTTA+TGG + chr4_4:74248446-74248465 Msa0702580:intron 45.0%
!! AGTTTTGATGCAACAGGCCT+CGG - chr4_4:74248576-74248595 None:intergenic 45.0%
!! GCTGCAAGTTTTGATGCAAC+AGG - chr4_4:74248582-74248601 None:intergenic 45.0%
TACTCCTCTTCTTACTGGTC+AGG + chr4_4:74248605-74248624 Msa0702580:CDS 45.0%
CTTACCTGACCAGTAAGAAG+AGG - chr4_4:74248612-74248631 None:intergenic 45.0%
TAAGGCAATGCATGCAAGCT+AGG - chr4_4:74248660-74248679 None:intergenic 45.0%
TGCCTTAGTAGTCTGAGTGA+AGG + chr4_4:74248673-74248692 Msa0702580:intron 45.0%
GGTGAACCAAGTGATAGTTC+TGG + chr4_4:74248736-74248755 Msa0702580:intron 45.0%
TGAGCACACAGATTTGACAG+AGG - chr4_4:74249034-74249053 None:intergenic 45.0%
TACACCTGGTAGCACAATTG+TGG + chr4_4:74249304-74249323 Msa0702580:intron 45.0%
TGAACCACAATTGTGCTACC+AGG - chr4_4:74249311-74249330 None:intergenic 45.0%
GGAGATCTGCCAAGTTCATT+TGG + chr4_4:74249719-74249738 Msa0702580:intron 45.0%
!! GCAAGATATTTTTGCGGCCT+TGG + chr4_4:74250126-74250145 Msa0702580:intron 45.0%
TGTGCAATCACTGCAACAAC+AGG + chr4_4:74250335-74250354 Msa0702580:three_prime_UTR 45.0%
ATCACTGCAACAACAGGTTG+AGG + chr4_4:74250341-74250360 Msa0702580:three_prime_UTR 45.0%
GTGCACATGCTTAACACCAA+CGG + chr4_4:74250444-74250463 Msa0702580:intron 45.0%
! AGATGAATATGTGGGGTGTC+CGG + chr4_4:74250627-74250646 Msa0702580:intron 45.0%
CCAAATGAGCTAAGCTCATG+GGG + chr4_4:74250693-74250712 Msa0702580:intron 45.0%
ATGAGAATGTGAATCGCCCT+AGG - chr4_4:74250780-74250799 None:intergenic 45.0%
TCAGCAAGGAAACCTATGGA+AGG - chr4_4:74250964-74250983 None:intergenic 45.0%
! TGGATCTTCTCATCGACTGT+TGG + chr4_4:74251320-74251339 Msa0702580:intron 45.0%
TCATCAGAAGAACGCTTTGC+GGG - chr4_4:74251811-74251830 None:intergenic 45.0%
! ACAGTTTTCTTCCGCCAAGT+TGG + chr4_4:74251873-74251892 Msa0702580:three_prime_UTR 45.0%
! CAGTTTTCTTCCGCCAAGTT+GGG + chr4_4:74251874-74251893 Msa0702580:three_prime_UTR 45.0%
GAAGTGACCAGTTTCATCCT+TGG + chr4_4:74251912-74251931 Msa0702580:three_prime_UTR 45.0%
!! AAAAAAAAAACAAAATATAA+TGG - chr4_4:74250576-74250595 None:intergenic 5.0%
AGGAGAGAGGACACTAGAGT+GGG + chr4_4:74246194-74246213 Msa0702580:CDS 50.0%
GAGGACACTAGAGTGGGAAT+TGG + chr4_4:74246200-74246219 Msa0702580:CDS 50.0%
CACTAGAGTGGGAATTGGCA+AGG + chr4_4:74246205-74246224 Msa0702580:CDS 50.0%
!! ATGAGGGTGATGGAGATTCC+AGG + chr4_4:74246558-74246577 Msa0702580:CDS 50.0%
GGAGATTCCAGGACTCACTT+TGG + chr4_4:74246569-74246588 Msa0702580:CDS 50.0%
!! TACAACAAAGGTACCACCCG+TGG - chr4_4:74246894-74246913 None:intergenic 50.0%
CATTAGCACCAAGATCTGCC+GGG - chr4_4:74247076-74247095 None:intergenic 50.0%
GCATTAGCACCAAGATCTGC+CGG - chr4_4:74247077-74247096 None:intergenic 50.0%
! TCAGCACCTTGTGAGGCATT+TGG - chr4_4:74247108-74247127 None:intergenic 50.0%
TTGTTGCAGGGCTCAGTTAG+AGG + chr4_4:74247211-74247230 Msa0702580:intron 50.0%
TGCTTGTAGAGTTGTGCCCA+AGG + chr4_4:74247466-74247485 Msa0702580:CDS 50.0%
!! GGGAATGAAGAAGGCATTCG+AGG + chr4_4:74247910-74247929 Msa0702580:intron 50.0%
CAAGTCTTCCCACAACAGAG+AGG - chr4_4:74248131-74248150 None:intergenic 50.0%
! TTTCTTGGTGGCCTTGAGCA+TGG + chr4_4:74248365-74248384 Msa0702580:CDS 50.0%
GCCGATACTCCTCTTCTTAC+TGG + chr4_4:74248600-74248619 Msa0702580:CDS 50.0%
GGTTGTGTCTTTCACTTGGC+AGG + chr4_4:74248757-74248776 Msa0702580:intron 50.0%
AGCTCAGTCAGGTATGTGAC+TGG - chr4_4:74249928-74249947 None:intergenic 50.0%
CAATGAGTGGAAGCTCAGTC+AGG - chr4_4:74249939-74249958 None:intergenic 50.0%
GCATGTGCACAGTGCAAAAC+AGG - chr4_4:74250434-74250453 None:intergenic 50.0%
! GATGAATATGTGGGGTGTCC+GGG + chr4_4:74250628-74250647 Msa0702580:intron 50.0%
! ATGAATATGTGGGGTGTCCG+GGG + chr4_4:74250629-74250648 Msa0702580:intron 50.0%
CCCCATGAGCTTAGCTCATT+TGG - chr4_4:74250696-74250715 None:intergenic 50.0%
TTCTCAACCCTCAACCTCCT+AGG + chr4_4:74250760-74250779 Msa0702580:intron 50.0%
TCTCAACCCTCAACCTCCTA+GGG + chr4_4:74250761-74250780 Msa0702580:intron 50.0%
AGAATGTGAATCGCCCTAGG+AGG - chr4_4:74250777-74250796 None:intergenic 50.0%
TGGCGGAAGAAAACTGTGTC+AGG - chr4_4:74251870-74251889 None:intergenic 50.0%
!!! AGCCATGGCTGCTTTTGGTT+AGG + chr4_4:74252032-74252051 Msa0702580:three_prime_UTR 50.0%
CACCTAACCAAAAGCAGCCA+TGG - chr4_4:74252037-74252056 None:intergenic 50.0%
GAGGAGAGAGGACACTAGAG+TGG + chr4_4:74246193-74246212 Msa0702580:CDS 55.0%
GTGATCAACCCGGCAGATCT+TGG + chr4_4:74247065-74247084 Msa0702580:CDS 55.0%
AGCCGCAACCGAGAAGAACA+AGG + chr4_4:74247244-74247263 Msa0702580:CDS 55.0%
CATTGTTCCTGCAGCAAGGG+TGG + chr4_4:74247382-74247401 Msa0702580:CDS 55.0%
GGCCTTGAGCATGGTAAGAG+AGG + chr4_4:74248374-74248393 Msa0702580:CDS 55.0%
GTGGCCATAAACCTGAGGCA+TGG - chr4_4:74248453-74248472 None:intergenic 55.0%
AAGGGGTGGCCATAAACCTG+AGG - chr4_4:74248458-74248477 None:intergenic 55.0%
TGCACAATATGTGCAGGGGC+CGG - chr4_4:74250663-74250682 None:intergenic 55.0%
GAATCGCCCTAGGAGGTTGA+GGG - chr4_4:74250770-74250789 None:intergenic 55.0%
TGAATCGCCCTAGGAGGTTG+AGG - chr4_4:74250771-74250790 None:intergenic 55.0%
TGAACTGCCATGGACCAGAG+CGG + chr4_4:74251118-74251137 Msa0702580:three_prime_UTR 55.0%
ATAAGAGCCGCTCTGGTCCA+TGG - chr4_4:74251128-74251147 None:intergenic 55.0%
ACCAGAGCGGCTCTTATCCA+AGG + chr4_4:74251131-74251150 Msa0702580:three_prime_UTR 55.0%
TCCTTGGATAAGAGCCGCTC+TGG - chr4_4:74251135-74251154 None:intergenic 55.0%
!! GCATCAGCCATGGCTGCTTT+TGG + chr4_4:74252027-74252046 Msa0702580:three_prime_UTR 55.0%
GCATGTTCCACCCTTGCTGC+AGG - chr4_4:74247392-74247411 None:intergenic 60.0%
! GTTGGCCTGTACGTACACCG+AGG + chr4_4:74248556-74248575 Msa0702580:CDS 60.0%
! ACAGGCCTCGGTGTACGTAC+AGG - chr4_4:74248564-74248583 None:intergenic 60.0%
CACAATATGTGCAGGGGCCG+GGG - chr4_4:74250661-74250680 None:intergenic 60.0%
GCACAATATGTGCAGGGGCC+GGG - chr4_4:74250662-74250681 None:intergenic 60.0%
GGTGTCCGGGGTTCGAACCC+CGG + chr4_4:74250641-74250660 Msa0702580:intron 70.0%
AGGGGCCGGGGTTCGAACCC+CGG - chr4_4:74250649-74250668 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74246017 74252236 74246017 ID=Msa0702580;Name=Msa0702580
chr4_4 mRNA 74246017 74252236 74246017 ID=Msa0702580-mRNA-1;Parent=Msa0702580;Name=Msa0702580-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0.57|0.73|0.93|0.78|0.8|15|749|305
chr4_4 exon 74246017 74246047 74246017 ID=Msa0702580-mRNA-1:exon:23046;Parent=Msa0702580-mRNA-1
chr4_4 exon 74246193 74246261 74246193 ID=Msa0702580-mRNA-1:exon:23047;Parent=Msa0702580-mRNA-1
chr4_4 exon 74246538 74246614 74246538 ID=Msa0702580-mRNA-1:exon:23048;Parent=Msa0702580-mRNA-1
chr4_4 exon 74246699 74246720 74246699 ID=Msa0702580-mRNA-1:exon:23049;Parent=Msa0702580-mRNA-1
chr4_4 exon 74246994 74247120 74246994 ID=Msa0702580-mRNA-1:exon:23050;Parent=Msa0702580-mRNA-1
chr4_4 exon 74247220 74247265 74247220 ID=Msa0702580-mRNA-1:exon:23051;Parent=Msa0702580-mRNA-1
chr4_4 exon 74247380 74247583 74247380 ID=Msa0702580-mRNA-1:exon:23052;Parent=Msa0702580-mRNA-1
chr4_4 exon 74247677 74247753 74247677 ID=Msa0702580-mRNA-1:exon:23053;Parent=Msa0702580-mRNA-1
chr4_4 exon 74247979 74248027 74247979 ID=Msa0702580-mRNA-1:exon:23054;Parent=Msa0702580-mRNA-1
chr4_4 exon 74248332 74248460 74248332 ID=Msa0702580-mRNA-1:exon:23055;Parent=Msa0702580-mRNA-1
chr4_4 exon 74248555 74248626 74248555 ID=Msa0702580-mRNA-1:exon:23056;Parent=Msa0702580-mRNA-1
chr4_4 exon 74249897 74249962 74249897 ID=Msa0702580-mRNA-1:exon:23057;Parent=Msa0702580-mRNA-1
chr4_4 exon 74250294 74250362 74250294 ID=Msa0702580-mRNA-1:exon:23058;Parent=Msa0702580-mRNA-1
chr4_4 exon 74250971 74251155 74250971 ID=Msa0702580-mRNA-1:exon:23059;Parent=Msa0702580-mRNA-1
chr4_4 exon 74251793 74252236 74251793 ID=Msa0702580-mRNA-1:exon:23060;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74246017 74246047 74246017 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74246193 74246261 74246193 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74246538 74246614 74246538 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74246699 74246720 74246699 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74246994 74247120 74246994 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74247220 74247265 74247220 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74247380 74247583 74247380 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74247677 74247753 74247677 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74247979 74248027 74247979 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74248332 74248460 74248332 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74248555 74248626 74248555 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 CDS 74249897 74249911 74249897 ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1
chr4_4 three_prime_UTR 74249912 74249962 74249912 ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1
chr4_4 three_prime_UTR 74250294 74250362 74250294 ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1
chr4_4 three_prime_UTR 74250971 74251155 74250971 ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1
chr4_4 three_prime_UTR 74251793 74252236 74251793 ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1
Gene Sequence

>Msa0702580

ATGTTGAAATGCACAGTGAAAAAGAAAAGAGGAGGAGAGAGGACACTAGAGTGGGAATTGGCAAGGGTAAAAGTTTCTGCTAGCAGAATCATAATTGAAGAGGCAACACCAAAGCGTTTGATGAGGGTGATGGAGATTCCAGGACTCACTTTGGAACATCTTAAAAGCCATTTACAGTATAGTTCCTTATACAAGAATTGTGAGAATAAGAAAAGGAATATGGGGGTTGAAGGAAGAAACAGAAAGGTACTTCAAGATATCCAAAATCTTGTGATCAACCCGGCAGATCTTGGTGCTAATGCTAATGTCACCAAATGCCTCACAAGGGCTCAGTTAGAGGCTCTTGCTCAAGCCGCAACCGAGAAGAACAAGAACATTGTTCCTGCAGCAAGGGTGGAACATGCTCAGCAGCAATGTAGACTAATAATAAGAATGGACATAATTTGTCAAACACAGACTGCTTGTAGAGTTGTGCCCAAGGATTTGGTTGAGAACATTGATTCATCTTATAAGGATAATGAATTGACTGCAACTGAGTATATTGATGACATCTACAAGTATTACAAACTCTCTGAAGATGATGTTCGTGTGCATGATTACATGGTTTCACAGCCAGATATAAATGCTAAGATGAGATCAATTCTTATTGACTGGGCCATAACTTATAGAGTCATCCAGCTCTTTGCTTATGAAATTTTTAAGATATTTCCCGTTTTAATGAAAAAAATTGTGGCTTTTCTTGGTGGCCTTGAGCATGGTAAGAGAGGAAAGTTTTGCATTGTGTTGGAACTTGAGTTTCAAGGTGTCAAAAAGAAGTTCACCATGCCTCAGAGTTGGCCTGTACGTACACCGAGGCCTGTTGCATCAAAACTTGCAGCCGATACTCCTCTTCTTACTGGTCAGGTTCCTGCAGCATAA

Protein sequence

>Msa0702580

MLKCTVKKKRGGERTLEWELARVKVSASRIIIEEATPKRLMRVMEIPGLTLEHLKSHLQYSSLYKNCENKKRNMGVEGRNRKVLQDIQNLVINPADLGANANVTKCLTRAQLEALAQAATEKNKNIVPAARVEHAQQQCRLIIRMDIICQTQTACRVVPKDLVENIDSSYKDNELTATEYIDDIYKYYKLSEDDVRVHDYMVSQPDINAKMRSILIDWAITYRVIQLFAYEIFKIFPVLMKKIVAFLGGLEHGKRGKFCIVLELEFQGVKKKFTMPQSWPVRTPRPVASKLAADTPLLTGQVPAA*