Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702580 | XP_003617201.1 | 64.362 | 188 | 32 | 2 | 68 | 220 | 18 | 205 | 9.87e-63 | 214 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702580 | sp|P25011|CCNB1_SOYBN | 52.632 | 76 | 34 | 1 | 147 | 220 | 159 | 234 | 7.17e-19 | 89.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702580 | G7KCT9 | 64.362 | 188 | 32 | 2 | 68 | 220 | 18 | 205 | 4.71e-63 | 214 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0702580 | Msa0702670 | 0.961543 | 7.977509e-120 | -8.615850e-47 |
Msa0702580 | Msa0747170 | 0.953735 | 1.423338e-111 | -8.615850e-47 |
Msa0702580 | Msa1253810 | 0.801268 | 9.754599e-49 | -8.615850e-47 |
Msa0702580 | Msa1279590 | 0.811583 | 6.512085e-51 | -8.615850e-47 |
Msa0702580 | Msa1289300 | 0.839168 | 1.862298e-57 | -8.615850e-47 |
Msa0702580 | Msa1297600 | 0.837038 | 6.578539e-57 | -8.615850e-47 |
Msa0164370 | Msa0702580 | 0.848002 | 8.086396e-60 | -8.615850e-47 |
Msa0186310 | Msa0702580 | 0.804345 | 2.258843e-49 | -8.615850e-47 |
Msa0364990 | Msa0702580 | 0.816465 | 5.452752e-52 | -8.615850e-47 |
Msa0414020 | Msa0702580 | 0.827676 | 1.371585e-54 | -8.615850e-47 |
Msa0337510 | Msa0702580 | 0.814721 | 1.333419e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702580 | MtrunA17_Chr5g0441371 | 64.362 | 188 | 32 | 2 | 68 | 220 | 18 | 205 | 9.07e-67 | 214 |
Msa0702580 | MtrunA17_Chr4g0000341 | 97.561 | 41 | 1 | 0 | 261 | 301 | 194 | 234 | 1.52e-18 | 85.9 |
Msa0702580 | MtrunA17_Chr7g0255771 | 42.697 | 89 | 48 | 2 | 134 | 220 | 152 | 239 | 2.85e-18 | 84.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0702580 | AT1G34460.9 | 33.498 | 203 | 104 | 8 | 51 | 224 | 102 | 302 | 3.77e-18 | 84.7 |
Msa0702580 | AT2G26760.1 | 35.443 | 158 | 92 | 5 | 68 | 220 | 18 | 170 | 5.14e-18 | 84.0 |
Msa0702580 | AT1G78900.1 | 87.805 | 41 | 5 | 0 | 261 | 301 | 193 | 233 | 7.81e-17 | 81.3 |
Msa0702580 | AT1G78900.2 | 87.805 | 41 | 5 | 0 | 261 | 301 | 193 | 233 | 7.81e-17 | 81.3 |
Msa0702580 | AT1G34460.5 | 35.429 | 175 | 84 | 7 | 79 | 224 | 142 | 316 | 8.85e-17 | 80.9 |
Msa0702580 | AT1G34460.7 | 35.429 | 175 | 84 | 7 | 79 | 224 | 142 | 316 | 1.22e-16 | 80.5 |
Msa0702580 | AT1G34460.6 | 35.429 | 175 | 84 | 7 | 79 | 224 | 142 | 316 | 1.29e-16 | 80.5 |
Msa0702580 | AT1G34460.3 | 35.429 | 175 | 84 | 7 | 79 | 224 | 142 | 316 | 1.29e-16 | 80.5 |
Msa0702580 | AT1G34460.8 | 35.429 | 175 | 84 | 7 | 79 | 224 | 142 | 316 | 1.29e-16 | 80.5 |
Msa0702580 | AT1G34460.1 | 35.429 | 175 | 84 | 7 | 79 | 224 | 142 | 316 | 1.29e-16 | 80.5 |
Msa0702580 | AT1G34460.2 | 34.857 | 175 | 82 | 6 | 79 | 224 | 142 | 313 | 3.17e-16 | 79.3 |
Msa0702580 | AT1G34460.4 | 34.857 | 175 | 82 | 6 | 79 | 224 | 142 | 313 | 3.17e-16 | 79.3 |
Msa0702580 | AT4G37490.1 | 43.750 | 80 | 43 | 1 | 147 | 224 | 130 | 209 | 8.38e-14 | 72.0 |
Msa0702580 | AT5G06150.2 | 30.890 | 191 | 81 | 7 | 79 | 218 | 30 | 220 | 1.28e-13 | 70.9 |
Msa0702580 | AT5G06150.1 | 30.890 | 191 | 81 | 7 | 79 | 218 | 30 | 220 | 2.55e-13 | 70.5 |
Find 94 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGGGTTGATCACAAGATTT+TGG | 0.152119 | 4_4:-74247055 | None:intergenic |
GAACATTGATTCATCTTATA+AGG | 0.243622 | 4_4:+74247499 | Msa0702580:CDS |
CTTTATACAATTCTTGTATA+AGG | 0.244151 | 4_4:-74246706 | None:intergenic |
TGAGAATAAGAAAAGGAATA+TGG | 0.262382 | 4_4:+74246995 | Msa0702580:CDS |
GCATCAGCCATGGCTGCTTT+TGG | 0.282508 | 4_4:+74252027 | Msa0702580:three_prime_UTR |
CTCATCTTAGCATTTATATC+TGG | 0.296448 | 4_4:-74247713 | None:intergenic |
AAAATTATGATACCTGTAAA+TGG | 0.306248 | 4_4:-74246605 | None:intergenic |
ACATCTTAAAAGCCATTTAC+AGG | 0.331557 | 4_4:+74246593 | Msa0702580:CDS |
TTGTTATATCCTTCGCATAA+TGG | 0.337376 | 4_4:+74251993 | Msa0702580:three_prime_UTR |
GCCGATACTCCTCTTCTTAC+TGG | 0.357840 | 4_4:+74248600 | Msa0702580:CDS |
CAAATGTACCTTGTTCTTCT+CGG | 0.360513 | 4_4:-74247252 | None:intergenic |
TTGTTGCAGGGCTCAGTTAG+AGG | 0.361146 | 4_4:+74247211 | Msa0702580:intron |
TAGAGTTGTGCCCAAGGATT+TGG | 0.364250 | 4_4:+74247472 | Msa0702580:CDS |
TCATCAGAAGAACGCTTTGC+GGG | 0.383815 | 4_4:-74251808 | None:intergenic |
TACCTTGTTCTTCTCGGTTG+CGG | 0.393742 | 4_4:-74247246 | None:intergenic |
TCAGCACCTTGTGAGGCATT+TGG | 0.410825 | 4_4:-74247105 | None:intergenic |
GTGATCAACCCGGCAGATCT+TGG | 0.415654 | 4_4:+74247065 | Msa0702580:CDS |
TTTAATTTCTTTGCCCAACT+TGG | 0.419752 | 4_4:-74251887 | None:intergenic |
AAAATACCCAAGGATGAAAC+TGG | 0.424434 | 4_4:-74251919 | None:intergenic |
GAGAATAAGAAAAGGAATAT+GGG | 0.425859 | 4_4:+74246996 | Msa0702580:CDS |
ATATGATACAAAGAGTAATC+TGG | 0.431534 | 4_4:-74252211 | None:intergenic |
ATGAGGGTGATGGAGATTCC+AGG | 0.435593 | 4_4:+74246558 | Msa0702580:CDS |
AATGTTCTCAACCAAATCCT+TGG | 0.445831 | 4_4:-74247483 | None:intergenic |
AAGATCCTCACTTACATCCT+TGG | 0.447048 | 4_4:-74251148 | None:intergenic |
GCTAGCAGAATCATAATTGA+AGG | 0.450621 | 4_4:+74246240 | Msa0702580:CDS |
TACTCCTCTTCTTACTGGTC+AGG | 0.451031 | 4_4:+74248605 | Msa0702580:CDS |
CTGGATGACTCTATAAGTTA+TGG | 0.451615 | 4_4:-74247981 | None:intergenic |
GAGGACACTAGAGTGGGAAT+TGG | 0.456363 | 4_4:+74246200 | Msa0702580:CDS |
ATCACCCTCATCAAACGCTT+TGG | 0.464468 | 4_4:-74246546 | None:intergenic |
AAGTGACCAGTTTCATCCTT+GGG | 0.464945 | 4_4:+74251913 | Msa0702580:three_prime_UTR |
TGAGATCAATTCTTATTGAC+TGG | 0.470841 | 4_4:+74247732 | Msa0702580:CDS |
TCCTTGGATAAGAGCCGCTC+TGG | 0.474125 | 4_4:-74251132 | None:intergenic |
TTTCTTGGTGGCCTTGAGCA+TGG | 0.482520 | 4_4:+74248365 | Msa0702580:CDS |
AGATGTTCCAAAGTGAGTCC+TGG | 0.483831 | 4_4:-74246576 | None:intergenic |
AAAGAAGTTCACCATGCCTC+AGG | 0.486057 | 4_4:+74248439 | Msa0702580:CDS |
TGTGCAATCACTGCAACAAC+AGG | 0.487175 | 4_4:+74250335 | Msa0702580:three_prime_UTR |
GCATTAGCACCAAGATCTGC+CGG | 0.492988 | 4_4:-74247074 | None:intergenic |
TTCATCAGAAGAACGCTTTG+CGG | 0.499048 | 4_4:-74251809 | None:intergenic |
ATGTAGACTAATAATAAGAA+TGG | 0.500817 | 4_4:+74247421 | Msa0702580:CDS |
TGTTCGTGTGCATGATTACA+TGG | 0.502047 | 4_4:+74247682 | Msa0702580:CDS |
GAAGTGACCAGTTTCATCCT+TGG | 0.503118 | 4_4:+74251912 | Msa0702580:three_prime_UTR |
GGAGATTCCAGGACTCACTT+TGG | 0.503348 | 4_4:+74246569 | Msa0702580:CDS |
GCATGTTCCACCCTTGCTGC+AGG | 0.503352 | 4_4:-74247389 | None:intergenic |
CAATGAGTGGAAGCTCAGTC+AGG | 0.503878 | 4_4:-74249936 | None:intergenic |
AAATTTCATAAGCAAAGAGC+TGG | 0.505500 | 4_4:-74248000 | None:intergenic |
TGGCGGAAGAAAACTGTGTC+AGG | 0.509632 | 4_4:-74251867 | None:intergenic |
GAATAAATATGTTATGCTGC+AGG | 0.509686 | 4_4:-74249900 | None:intergenic |
AATTTCTTTGCCCAACTTGG+CGG | 0.517688 | 4_4:-74251884 | None:intergenic |
ATGTTCTCAACCAAATCCTT+GGG | 0.520528 | 4_4:-74247482 | None:intergenic |
TTATCTCCTCATGTTGTGAA+TGG | 0.521527 | 4_4:+74251050 | Msa0702580:three_prime_UTR |
ACAGGCCTCGGTGTACGTAC+AGG | 0.529911 | 4_4:-74248561 | None:intergenic |
CATTGTTCCTGCAGCAAGGG+TGG | 0.537294 | 4_4:+74247382 | Msa0702580:CDS |
AAACTGTGTCAGGTTACAAT+CGG | 0.540666 | 4_4:-74251857 | None:intergenic |
GTTTGATAGTTGAACTGCCA+TGG | 0.541365 | 4_4:+74251108 | Msa0702580:three_prime_UTR |
CACTAGAGTGGGAATTGGCA+AGG | 0.548048 | 4_4:+74246205 | Msa0702580:CDS |
ATAAGAGCCGCTCTGGTCCA+TGG | 0.552906 | 4_4:-74251125 | None:intergenic |
GTGTTGGAACTTGAGTTTCA+AGG | 0.559419 | 4_4:+74248410 | Msa0702580:CDS |
AGAATAAGAAAAGGAATATG+GGG | 0.559606 | 4_4:+74246997 | Msa0702580:CDS |
CACCTAACCAAAAGCAGCCA+TGG | 0.562153 | 4_4:-74252034 | None:intergenic |
ACCAGTAAGAAGAGGAGTAT+CGG | 0.562952 | 4_4:-74248601 | None:intergenic |
AGAACATTGTTCCTGCAGCA+AGG | 0.565140 | 4_4:+74247378 | Msa0702580:intron |
TGCTTGTAGAGTTGTGCCCA+AGG | 0.568487 | 4_4:+74247466 | Msa0702580:CDS |
TTCCTCTCTTACCATGCTCA+AGG | 0.571680 | 4_4:-74248376 | None:intergenic |
TTGCGAAGTTATTTGATCTG+CGG | 0.573378 | 4_4:+74251964 | Msa0702580:three_prime_UTR |
GAACATTGTTCCTGCAGCAA+GGG | 0.574930 | 4_4:+74247379 | Msa0702580:intron |
GAGGAGAGAGGACACTAGAG+TGG | 0.575461 | 4_4:+74246193 | Msa0702580:CDS |
AGCTCAGTCAGGTATGTGAC+TGG | 0.576186 | 4_4:-74249925 | None:intergenic |
GGCCTTGAGCATGGTAAGAG+AGG | 0.580399 | 4_4:+74248374 | Msa0702580:CDS |
AAAGCGTTTGATGAGGGTGA+TGG | 0.580444 | 4_4:+74246548 | Msa0702580:CDS |
CATTAGCACCAAGATCTGCC+GGG | 0.580889 | 4_4:-74247073 | None:intergenic |
AATTAGGTGAGAATAAGAAA+AGG | 0.583677 | 4_4:+74246988 | Msa0702580:intron |
AATAACTTCGCAAGATACAA+TGG | 0.587194 | 4_4:-74251954 | None:intergenic |
CAACACCAAAGCGTTTGATG+AGG | 0.592407 | 4_4:+74246541 | Msa0702580:CDS |
TATTTATAAGTACAACAAAG+TGG | 0.602644 | 4_4:-74252129 | None:intergenic |
AGGAGAGAGGACACTAGAGT+GGG | 0.604291 | 4_4:+74246194 | Msa0702580:CDS |
TATGGAATCAGCACCTTGTG+AGG | 0.606345 | 4_4:-74247112 | None:intergenic |
AACACCAAAGCGTTTGATGA+GGG | 0.608391 | 4_4:+74246542 | Msa0702580:CDS |
CTTACCTGACCAGTAAGAAG+AGG | 0.608391 | 4_4:-74248609 | None:intergenic |
ACCAGAGCGGCTCTTATCCA+AGG | 0.610602 | 4_4:+74251131 | Msa0702580:three_prime_UTR |
CCAAAATCTTGTGATCAACC+CGG | 0.612472 | 4_4:+74247055 | Msa0702580:CDS |
TCACATCCATTCACAACATG+AGG | 0.614060 | 4_4:-74251056 | None:intergenic |
AATCAAAAGCCATTATGCGA+AGG | 0.618602 | 4_4:-74252002 | None:intergenic |
ATCACTGCAACAACAGGTTG+AGG | 0.619338 | 4_4:+74250341 | Msa0702580:three_prime_UTR |
AGCCGCAACCGAGAAGAACA+AGG | 0.639614 | 4_4:+74247244 | Msa0702580:CDS |
ATAACATACAAATCAATGAG+TGG | 0.640067 | 4_4:-74249949 | None:intergenic |
ATGTCACCAAATGCCTCACA+AGG | 0.640555 | 4_4:+74247099 | Msa0702580:CDS |
ACTAGAGTGGGAATTGGCAA+GGG | 0.655908 | 4_4:+74246206 | Msa0702580:CDS |
GTGGCCATAAACCTGAGGCA+TGG | 0.663532 | 4_4:-74248450 | None:intergenic |
GGTTGAAGGAAGAAACAGAA+AGG | 0.663667 | 4_4:+74247019 | Msa0702580:CDS |
GAGTAAGATTACATTCAGCA+AGG | 0.663833 | 4_4:-74250975 | None:intergenic |
GAATAAGAAAAGGAATATGG+GGG | 0.679741 | 4_4:+74246998 | Msa0702580:CDS |
AGATATCTGCATTATGTGTG+TGG | 0.692302 | 4_4:-74251006 | None:intergenic |
TGAACTGCCATGGACCAGAG+CGG | 0.740700 | 4_4:+74251118 | Msa0702580:three_prime_UTR |
GTTGGCCTGTACGTACACCG+AGG | 0.801438 | 4_4:+74248556 | Msa0702580:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTTCTATAAAATAATATAA+AGG | + | chr4_4:74250484-74250503 | Msa0702580:intron | 10.0% |
!!! | TTTGTTTTTTTTTTTTTTTG+TGG | + | chr4_4:74250582-74250601 | Msa0702580:intron | 10.0% |
!!! | ACTTCAATTTATTTATTTTT+TGG | + | chr4_4:74250804-74250823 | Msa0702580:intron | 10.0% |
!!! | AAACTTTTCATATCATAAAT+TGG | - | chr4_4:74246332-74246351 | None:intergenic | 15.0% |
!!! | TATGAAAAGTTTTTTATTTG+TGG | + | chr4_4:74246340-74246359 | Msa0702580:intron | 15.0% |
!!! | ATGAAAAGTTTTTTATTTGT+GGG | + | chr4_4:74246341-74246360 | Msa0702580:intron | 15.0% |
!!! | TGATTGATTTTTAATGAATT+TGG | + | chr4_4:74246464-74246483 | Msa0702580:intron | 15.0% |
!! | TAATTTCAATTGTAAAGTTA+TGG | - | chr4_4:74247133-74247152 | None:intergenic | 15.0% |
!! | CAATAAAAACAAATAAAATC+AGG | - | chr4_4:74247191-74247210 | None:intergenic | 15.0% |
!! | GATTTGTAGAAAATATTAAA+GGG | + | chr4_4:74248093-74248112 | Msa0702580:intron | 15.0% |
!!! | ACAATTTTTTTCATTAAAAC+GGG | - | chr4_4:74248341-74248360 | None:intergenic | 15.0% |
!!! | CACAATTTTTTTCATTAAAA+CGG | - | chr4_4:74248342-74248361 | None:intergenic | 15.0% |
!! | TGTATATTAAGTTATAATGA+AGG | - | chr4_4:74248517-74248536 | None:intergenic | 15.0% |
!! | TCATTATAACTTAATATACA+TGG | + | chr4_4:74248517-74248536 | Msa0702580:intron | 15.0% |
!!! | GAAAAGATTTTACTAAATTA+CGG | + | chr4_4:74249835-74249854 | Msa0702580:intron | 15.0% |
!!! | AAAAGATTTTACTAAATTAC+GGG | + | chr4_4:74249836-74249855 | Msa0702580:intron | 15.0% |
!!! | ATTTTCAACATATTTATTTC+TGG | + | chr4_4:74250070-74250089 | Msa0702580:intron | 15.0% |
!!! | ATTTCTGGTTTTTTTTTTTT+TGG | + | chr4_4:74250085-74250104 | Msa0702580:intron | 15.0% |
!!! | TTCTTTTCTTATTAGATAAA+TGG | + | chr4_4:74250279-74250298 | Msa0702580:intron | 15.0% |
!! | TAATTTATTACTACTATTCA+AGG | + | chr4_4:74250397-74250416 | Msa0702580:intron | 15.0% |
!! | AAATACTTCAATTTAGTTAA+TGG | + | chr4_4:74250833-74250852 | Msa0702580:intron | 15.0% |
!!! | TGTTTTCATTATATTCTTAA+AGG | + | chr4_4:74251474-74251493 | Msa0702580:intron | 15.0% |
!! | AAAATTATGATACCTGTAAA+TGG | - | chr4_4:74246608-74246627 | None:intergenic | 20.0% |
!! | CTTTATACAATTCTTGTATA+AGG | - | chr4_4:74246709-74246728 | None:intergenic | 20.0% |
!!! | ATTAATTTGTTCTGTGTATA+TGG | + | chr4_4:74246773-74246792 | Msa0702580:intron | 20.0% |
!!! | TTAATTTGTTCTGTGTATAT+GGG | + | chr4_4:74246774-74246793 | Msa0702580:intron | 20.0% |
!!! | TGATTTATGCTTTTTGTTAA+TGG | + | chr4_4:74246965-74246984 | Msa0702580:intron | 20.0% |
!! | TTATAAAGATATACAACATG+TGG | - | chr4_4:74247164-74247183 | None:intergenic | 20.0% |
!! | TTTAGTGATACAATGTATTA+AGG | - | chr4_4:74247327-74247346 | None:intergenic | 20.0% |
!!! | TATCACTAAATTTGTTTTGA+TGG | + | chr4_4:74247337-74247356 | Msa0702580:intron | 20.0% |
!! | ATGTAGACTAATAATAAGAA+TGG | + | chr4_4:74247421-74247440 | Msa0702580:CDS | 20.0% |
!!! | CTTTGCTTATGAAATTTTTA+AGG | + | chr4_4:74248006-74248025 | Msa0702580:CDS | 20.0% |
!! | ATTTATTATATCACATGTTC+AGG | + | chr4_4:74248053-74248072 | Msa0702580:intron | 20.0% |
!! | GGATTTGTAGAAAATATTAA+AGG | + | chr4_4:74248092-74248111 | Msa0702580:intron | 20.0% |
!!! | CGTTTTAATGAAAAAAATTG+TGG | + | chr4_4:74248340-74248359 | Msa0702580:CDS | 20.0% |
!! | TTAAGTTATAATGAAGGATA+AGG | - | chr4_4:74248511-74248530 | None:intergenic | 20.0% |
!! | AGTGAAGGATTTATATTTAT+TGG | + | chr4_4:74248688-74248707 | Msa0702580:intron | 20.0% |
!! | ATTTCATTATGTAGTCTAAT+TGG | - | chr4_4:74249569-74249588 | None:intergenic | 20.0% |
!!! | ATGATTTATTCTTTTCATCA+GGG | + | chr4_4:74249673-74249692 | Msa0702580:intron | 20.0% |
!! | CAGCAAAATTATTATAAGAA+AGG | - | chr4_4:74249700-74249719 | None:intergenic | 20.0% |
!!! | CTTTCTTATAATAATTTTGC+TGG | + | chr4_4:74249698-74249717 | Msa0702580:intron | 20.0% |
!!! | AATCTTTTCTTAGTATAAGA+CGG | - | chr4_4:74249824-74249843 | None:intergenic | 20.0% |
!! | AAATATGTTGAAAATGTTGT+AGG | - | chr4_4:74250065-74250084 | None:intergenic | 20.0% |
!!! | TTAATACTTTAAAGATTGCA+AGG | - | chr4_4:74250380-74250399 | None:intergenic | 20.0% |
!! | AATATTACATCTGATAGAAA+AGG | - | chr4_4:74250731-74250750 | None:intergenic | 20.0% |
!!! | CTAAAGTGTATAATTTTCTT+TGG | - | chr4_4:74251364-74251383 | None:intergenic | 20.0% |
!!! | ATAATTAGTATCGAACATAT+AGG | - | chr4_4:74251629-74251648 | None:intergenic | 20.0% |
!!! | AAGTAATAGTTTTCATATAG+TGG | - | chr4_4:74251678-74251697 | None:intergenic | 20.0% |
!! | TATTTATAAGTACAACAAAG+TGG | - | chr4_4:74252132-74252151 | None:intergenic | 20.0% |
!!! | TGGTTTTAGCATAAATTTTC+AGG | + | chr4_4:74246171-74246190 | Msa0702580:intron | 25.0% |
!!! | TTTTAGCATAAATTTTCAGG+AGG | + | chr4_4:74246174-74246193 | Msa0702580:intron | 25.0% |
!!! | GATAAGTTTTATGTGTATGT+TGG | + | chr4_4:74246374-74246393 | Msa0702580:intron | 25.0% |
! | GTTTAAATTAGTGATTTCCT+GGG | + | chr4_4:74246401-74246420 | Msa0702580:intron | 25.0% |
!! | TTTTTCATACTATGCATATG+TGG | + | chr4_4:74246512-74246531 | Msa0702580:intron | 25.0% |
!!! | TTTGAGCTTATTTGATTTTC+TGG | + | chr4_4:74246659-74246678 | Msa0702580:intron | 25.0% |
!!! | AGATTTTGAAATGAAATCTG+AGG | + | chr4_4:74246813-74246832 | Msa0702580:intron | 25.0% |
!!! | GATTTTGAAATGAAATCTGA+GGG | + | chr4_4:74246814-74246833 | Msa0702580:intron | 25.0% |
! | TTAGGGTTTATGTAATAATC+TGG | + | chr4_4:74246852-74246871 | Msa0702580:intron | 25.0% |
!!! | TGCTTTTTGTTAATGGAATT+AGG | + | chr4_4:74246972-74246991 | Msa0702580:intron | 25.0% |
! | AATTAGGTGAGAATAAGAAA+AGG | + | chr4_4:74246988-74247007 | Msa0702580:intron | 25.0% |
! | TGAGAATAAGAAAAGGAATA+TGG | + | chr4_4:74246995-74247014 | Msa0702580:CDS | 25.0% |
! | GAGAATAAGAAAAGGAATAT+GGG | + | chr4_4:74246996-74247015 | Msa0702580:CDS | 25.0% |
! | AGAATAAGAAAAGGAATATG+GGG | + | chr4_4:74246997-74247016 | Msa0702580:CDS | 25.0% |
!!! | TTTGTTTTTATTGTTGTTGC+AGG | + | chr4_4:74247198-74247217 | Msa0702580:intron | 25.0% |
!!! | TTGTTTTTATTGTTGTTGCA+GGG | + | chr4_4:74247199-74247218 | Msa0702580:intron | 25.0% |
!! | TTACTTTGTTCCATTTTCAA+AGG | + | chr4_4:74247293-74247312 | Msa0702580:intron | 25.0% |
!!! | GAACATTGATTCATCTTATA+AGG | + | chr4_4:74247499-74247518 | Msa0702580:CDS | 25.0% |
! | TATTTATTGCCCATATTAGA+TGG | + | chr4_4:74247812-74247831 | Msa0702580:intron | 25.0% |
!! | TTTTGTCAAAAAAGATATGC+AGG | + | chr4_4:74247873-74247892 | Msa0702580:intron | 25.0% |
! | GTGATATAATAAATTCGTGA+AGG | - | chr4_4:74248047-74248066 | None:intergenic | 25.0% |
! | TAATAACAGTTCTCATTGAA+AGG | + | chr4_4:74248192-74248211 | Msa0702580:intron | 25.0% |
! | CTTTACAAAAAGAAAGAAAG+TGG | - | chr4_4:74248245-74248264 | None:intergenic | 25.0% |
!! | AAAAAAATTGTGGCTTTTCT+TGG | + | chr4_4:74248350-74248369 | Msa0702580:CDS | 25.0% |
! | TCAATCAAGCAACTAAAAAA+GGG | - | chr4_4:74248476-74248495 | None:intergenic | 25.0% |
! | TTCAATCAAGCAACTAAAAA+AGG | - | chr4_4:74248477-74248496 | None:intergenic | 25.0% |
!! | GATTTATATTTATTGGCTGT+TGG | + | chr4_4:74248695-74248714 | Msa0702580:intron | 25.0% |
! | TGAATGAAATATCATCAAAG+TGG | - | chr4_4:74249006-74249025 | None:intergenic | 25.0% |
!! | TTGATGATATTTCATTCAAG+TGG | + | chr4_4:74249008-74249027 | Msa0702580:intron | 25.0% |
! | TGTTATCCTAATTAAGCATA+AGG | + | chr4_4:74249099-74249118 | Msa0702580:intron | 25.0% |
! | GTTATCCTAATTAAGCATAA+GGG | + | chr4_4:74249100-74249119 | Msa0702580:intron | 25.0% |
! | ACAAAAAATGACGATTATGT+GGG | - | chr4_4:74249452-74249471 | None:intergenic | 25.0% |
!!! | ACATAATCGTCATTTTTTGT+CGG | + | chr4_4:74249452-74249471 | Msa0702580:intron | 25.0% |
!!! | ATTTTTTGTCGGAAATACAT+GGG | + | chr4_4:74249463-74249482 | Msa0702580:intron | 25.0% |
! | TAATGAAATTAGACTGAATC+AGG | + | chr4_4:74249580-74249599 | Msa0702580:intron | 25.0% |
!! | GATGATTTATTCTTTTCATC+AGG | + | chr4_4:74249672-74249691 | Msa0702580:intron | 25.0% |
! | AAATAAAGGAAACAGAATGA+GGG | - | chr4_4:74249791-74249810 | None:intergenic | 25.0% |
! | ACGGAATGAAAATCAAATAA+AGG | - | chr4_4:74249805-74249824 | None:intergenic | 25.0% |
!!! | TGTTGATTTGATCTATAATG+TGG | + | chr4_4:74249862-74249881 | Msa0702580:intron | 25.0% |
! | ATAACATACAAATCAATGAG+TGG | - | chr4_4:74249952-74249971 | None:intergenic | 25.0% |
!!! | GTTTTTTTTTTTTTGGAGTG+AGG | + | chr4_4:74250092-74250111 | Msa0702580:intron | 25.0% |
!!! | TAATGTGCAAGATATTTTTG+CGG | + | chr4_4:74250120-74250139 | Msa0702580:intron | 25.0% |
!!! | GTTTTAAAAACACATCAAGA+AGG | - | chr4_4:74250171-74250190 | None:intergenic | 25.0% |
! | CTAAAAGAGATAGCAAATTA+AGG | - | chr4_4:74250221-74250240 | None:intergenic | 25.0% |
!! | GTTAATTTTTCTGATGTCTT+CGG | + | chr4_4:74250255-74250274 | Msa0702580:intron | 25.0% |
!! | TGCATATCCTTAATTTGATT+GGG | - | chr4_4:74250902-74250921 | None:intergenic | 25.0% |
!! | ATGCATATCCTTAATTTGAT+TGG | - | chr4_4:74250903-74250922 | None:intergenic | 25.0% |
!!! | ATTTTAATTTTGCCTTCCAT+AGG | + | chr4_4:74250949-74250968 | Msa0702580:intron | 25.0% |
! | AAAAGATGCAACTTATTATC+TGG | + | chr4_4:74251385-74251404 | Msa0702580:intron | 25.0% |
! | ATGATTGATGTTATGAAAGT+TGG | - | chr4_4:74251434-74251453 | None:intergenic | 25.0% |
! | TTTCATAACATCAATCATCT+TGG | + | chr4_4:74251436-74251455 | Msa0702580:intron | 25.0% |
! | ATATGATACAAAGAGTAATC+TGG | - | chr4_4:74252214-74252233 | None:intergenic | 25.0% |
GGTTTATCTATACAGTAACA+TGG | + | chr4_4:74246151-74246170 | Msa0702580:intron | 30.0% | |
GGTTTAAATTAGTGATTTCC+TGG | + | chr4_4:74246400-74246419 | Msa0702580:intron | 30.0% | |
ACATCTTAAAAGCCATTTAC+AGG | + | chr4_4:74246593-74246612 | Msa0702580:CDS | 30.0% | |
! | GCTCAAACTCTTATAGTTTT+TGG | - | chr4_4:74246646-74246665 | None:intergenic | 30.0% |
ACAAAAAATTCAACGTGAGA+TGG | - | chr4_4:74246752-74246771 | None:intergenic | 30.0% | |
GGTGGTTTAGTTAAGTATTA+GGG | + | chr4_4:74246835-74246854 | Msa0702580:intron | 30.0% | |
GAAAATGTTTAGTGAATCCA+CGG | + | chr4_4:74246874-74246893 | Msa0702580:intron | 30.0% | |
AAAATGTTTAGTGAATCCAC+GGG | + | chr4_4:74246875-74246894 | Msa0702580:intron | 30.0% | |
AGCAGAAAAATGTACAACAA+AGG | - | chr4_4:74246906-74246925 | None:intergenic | 30.0% | |
! | TGTTGTACATTTTTCTGCTA+TGG | + | chr4_4:74246907-74246926 | Msa0702580:intron | 30.0% |
GAATAAGAAAAGGAATATGG+GGG | + | chr4_4:74246998-74247017 | Msa0702580:CDS | 30.0% | |
CTCATCTTAGCATTTATATC+TGG | - | chr4_4:74247716-74247735 | None:intergenic | 30.0% | |
TGAGATCAATTCTTATTGAC+TGG | + | chr4_4:74247732-74247751 | Msa0702580:CDS | 30.0% | |
GATCCAAATCCATCTAATAT+GGG | - | chr4_4:74247824-74247843 | None:intergenic | 30.0% | |
AGATCCAAATCCATCTAATA+TGG | - | chr4_4:74247825-74247844 | None:intergenic | 30.0% | |
AAATTTCATAAGCAAAGAGC+TGG | - | chr4_4:74248003-74248022 | None:intergenic | 30.0% | |
! | TCAGGTCTAAGTTATACTTT+TGG | + | chr4_4:74248071-74248090 | Msa0702580:intron | 30.0% |
!! | CTCAAAAAAAGTTGATGTCA+TGG | - | chr4_4:74248172-74248191 | None:intergenic | 30.0% |
CAATCAAGCAACTAAAAAAG+GGG | - | chr4_4:74248475-74248494 | None:intergenic | 30.0% | |
TAGTTGCTTGATTGAAGTAT+TGG | + | chr4_4:74248481-74248500 | Msa0702580:intron | 30.0% | |
TGTTAAAATATGTTCGTGTC+AGG | + | chr4_4:74248794-74248813 | Msa0702580:intron | 30.0% | |
GTTAAAATATGTTCGTGTCA+GGG | + | chr4_4:74248795-74248814 | Msa0702580:intron | 30.0% | |
ATCTGCAGGTAAACAATTAT+AGG | + | chr4_4:74248877-74248896 | Msa0702580:intron | 30.0% | |
TATTCTATCTGGCTATTCTA+AGG | - | chr4_4:74249428-74249447 | None:intergenic | 30.0% | |
GACAAAAAATGACGATTATG+TGG | - | chr4_4:74249453-74249472 | None:intergenic | 30.0% | |
!!! | CATTTTTTGTCGGAAATACA+TGG | + | chr4_4:74249462-74249481 | Msa0702580:intron | 30.0% |
TAGAATTCAGAAGCCAAAAA+AGG | + | chr4_4:74249492-74249511 | Msa0702580:intron | 30.0% | |
!!! | TCCAAAACAACATCCTTTTT+TGG | - | chr4_4:74249508-74249527 | None:intergenic | 30.0% |
AAGATACTTACAATCTACCA+AGG | - | chr4_4:74249757-74249776 | None:intergenic | 30.0% | |
AATAAAGGAAACAGAATGAG+GGG | - | chr4_4:74249790-74249809 | None:intergenic | 30.0% | |
CAAATAAAGGAAACAGAATG+AGG | - | chr4_4:74249792-74249811 | None:intergenic | 30.0% | |
TATAATGTGGTACTTATTGC+AGG | + | chr4_4:74249875-74249894 | Msa0702580:intron | 30.0% | |
GAATAAATATGTTATGCTGC+AGG | - | chr4_4:74249903-74249922 | None:intergenic | 30.0% | |
ATTCAGGAAAATCTGTTTAG+TGG | + | chr4_4:74250033-74250052 | Msa0702580:intron | 30.0% | |
TTTGCAGTAAGATGAATATG+TGG | + | chr4_4:74250618-74250637 | Msa0702580:intron | 30.0% | |
TTGCAGTAAGATGAATATGT+GGG | + | chr4_4:74250619-74250638 | Msa0702580:intron | 30.0% | |
! | GCATATCCTTAATTTGATTG+GGG | - | chr4_4:74250901-74250920 | None:intergenic | 30.0% |
ATCATACAGATTTAACTCCT+TGG | + | chr4_4:74251172-74251191 | Msa0702580:intron | 30.0% | |
ATTCGGACACATTTATGATT+TGG | - | chr4_4:74251284-74251303 | None:intergenic | 30.0% | |
TTGCGTATTAGCAATAATAG+AGG | + | chr4_4:74251500-74251519 | Msa0702580:intron | 30.0% | |
! | CTTTTGTCAAAATTCTACTG+TGG | + | chr4_4:74251566-74251585 | Msa0702580:intron | 30.0% |
GATAATGATTCGAAACAGTT+TGG | + | chr4_4:74251775-74251794 | Msa0702580:intron | 30.0% | |
! | TTTAATTTCTTTGCCCAACT+TGG | - | chr4_4:74251890-74251909 | None:intergenic | 30.0% |
!!! | TTTCATCCTTGGGTATTTTT+TGG | + | chr4_4:74251923-74251942 | Msa0702580:three_prime_UTR | 30.0% |
TATCTTCCAAAAAATACCCA+AGG | - | chr4_4:74251932-74251951 | None:intergenic | 30.0% | |
AATAACTTCGCAAGATACAA+TGG | - | chr4_4:74251957-74251976 | None:intergenic | 30.0% | |
TTGTTATATCCTTCGCATAA+TGG | + | chr4_4:74251993-74252012 | Msa0702580:three_prime_UTR | 30.0% | |
TGCACAGTGAAAAAGAAAAG+AGG | + | chr4_4:74246026-74246045 | Msa0702580:CDS | 35.0% | |
! | TGTTATGACCACTTGCATTT+TGG | + | chr4_4:74246098-74246117 | Msa0702580:intron | 35.0% |
AAGTTAGTCCAAAATGCAAG+TGG | - | chr4_4:74246109-74246128 | None:intergenic | 35.0% | |
! | TGCATGACTTTTGTATCTAC+TGG | + | chr4_4:74246130-74246149 | Msa0702580:intron | 35.0% |
!! | ATAAATTTTCAGGAGGAGAG+AGG | + | chr4_4:74246181-74246200 | Msa0702580:intron | 35.0% |
GCTAGCAGAATCATAATTGA+AGG | + | chr4_4:74246240-74246259 | Msa0702580:CDS | 35.0% | |
!! | TTTTTATTTGTGGGCTGAAC+AGG | + | chr4_4:74246350-74246369 | Msa0702580:intron | 35.0% |
! | GTTTTATGTGTATGTTGGTC+AGG | + | chr4_4:74246379-74246398 | Msa0702580:intron | 35.0% |
AACTTATCATCAACAAACCC+AGG | - | chr4_4:74246421-74246440 | None:intergenic | 35.0% | |
! | TTTGAAATGAAATCTGAGGG+TGG | + | chr4_4:74246817-74246836 | Msa0702580:intron | 35.0% |
GGGTGGTTTAGTTAAGTATT+AGG | + | chr4_4:74246834-74246853 | Msa0702580:intron | 35.0% | |
CAAATGTACCTTGTTCTTCT+CGG | - | chr4_4:74247255-74247274 | None:intergenic | 35.0% | |
! | GGAAACACAACCTTTGAAAA+TGG | - | chr4_4:74247306-74247325 | None:intergenic | 35.0% |
ATGTTCTCAACCAAATCCTT+GGG | - | chr4_4:74247485-74247504 | None:intergenic | 35.0% | |
AATGTTCTCAACCAAATCCT+TGG | - | chr4_4:74247486-74247505 | None:intergenic | 35.0% | |
TTGACTTTGATGAATGACAC+AGG | + | chr4_4:74247655-74247674 | Msa0702580:intron | 35.0% | |
! | TTGCCCATATTAGATGGATT+TGG | + | chr4_4:74247818-74247837 | Msa0702580:intron | 35.0% |
ATGCAGGCAATAACAATGAT+AGG | + | chr4_4:74247889-74247908 | Msa0702580:intron | 35.0% | |
TGCAGGCAATAACAATGATA+GGG | + | chr4_4:74247890-74247909 | Msa0702580:intron | 35.0% | |
ACAATGATAGGGAATGAAGA+AGG | + | chr4_4:74247901-74247920 | Msa0702580:intron | 35.0% | |
CTGGATGACTCTATAAGTTA+TGG | - | chr4_4:74247984-74248003 | None:intergenic | 35.0% | |
! | AAAATTGTGGCTTTTCTTGG+TGG | + | chr4_4:74248353-74248372 | Msa0702580:CDS | 35.0% |
! | AGGAAAGTTTTGCATTGTGT+TGG | + | chr4_4:74248394-74248413 | Msa0702580:CDS | 35.0% |
TGGTCTCCTATATTTCTTCT+TGG | + | chr4_4:74248715-74248734 | Msa0702580:intron | 35.0% | |
GGTTCACCAAGAAGAAATAT+AGG | - | chr4_4:74248724-74248743 | None:intergenic | 35.0% | |
GGTAATATGAAGGAATGACA+TGG | - | chr4_4:74248850-74248869 | None:intergenic | 35.0% | |
GATGACATTGGGTAATATGA+AGG | - | chr4_4:74248860-74248879 | None:intergenic | 35.0% | |
TGACTAAAACTACCTCTCAT+CGG | + | chr4_4:74248969-74248988 | Msa0702580:intron | 35.0% | |
CACATCCCTTATGCTTAATT+AGG | - | chr4_4:74249108-74249127 | None:intergenic | 35.0% | |
! | ACACACACTATTGTTCTAGA+TGG | + | chr4_4:74249280-74249299 | Msa0702580:intron | 35.0% |
TTCAAGTGATAGGATTCTGA+AGG | + | chr4_4:74249371-74249390 | Msa0702580:intron | 35.0% | |
! | ATTATGTGGGCTATTCTATC+TGG | - | chr4_4:74249439-74249458 | None:intergenic | 35.0% |
!! | GCCAAAAAAGGATGTTGTTT+TGG | + | chr4_4:74249504-74249523 | Msa0702580:intron | 35.0% |
! | AAAGTGAGGCATCAAAGTTT+AGG | + | chr4_4:74249605-74249624 | Msa0702580:intron | 35.0% |
! | CTTAGTCTTTCAACTCACAT+AGG | + | chr4_4:74249650-74249669 | Msa0702580:intron | 35.0% |
ATCAAGGAACCAAATGAACT+TGG | - | chr4_4:74249731-74249750 | None:intergenic | 35.0% | |
! | TTTGGTTCCTTGATAAACCT+TGG | + | chr4_4:74249737-74249756 | Msa0702580:intron | 35.0% |
CAATCTACCAAGGTTTATCA+AGG | - | chr4_4:74249747-74249766 | None:intergenic | 35.0% | |
! | TTTTTCTTCCAGCAACATTC+AGG | + | chr4_4:74250017-74250036 | Msa0702580:intron | 35.0% |
! | TGGAAATGAGTCGGTATTTT+GGG | - | chr4_4:74250193-74250212 | None:intergenic | 35.0% |
GATAGCAAATTAAGGAATCC+TGG | - | chr4_4:74250213-74250232 | None:intergenic | 35.0% | |
AACACCAACGGAAATGAAAA+AGG | + | chr4_4:74250456-74250475 | Msa0702580:intron | 35.0% | |
ACACCAACGGAAATGAAAAA+GGG | + | chr4_4:74250457-74250476 | Msa0702580:intron | 35.0% | |
!! | TTTCCCTTTTTCATTTCCGT+TGG | - | chr4_4:74250463-74250482 | None:intergenic | 35.0% |
TGCAGTAAGATGAATATGTG+GGG | + | chr4_4:74250620-74250639 | Msa0702580:intron | 35.0% | |
ATAATGCACAATATGTGCAG+GGG | - | chr4_4:74250667-74250686 | None:intergenic | 35.0% | |
GATAATGCACAATATGTGCA+GGG | - | chr4_4:74250668-74250687 | None:intergenic | 35.0% | |
GTATGACCCCAATCAAATTA+AGG | + | chr4_4:74250892-74250911 | Msa0702580:intron | 35.0% | |
GAGTAAGATTACATTCAGCA+AGG | - | chr4_4:74250978-74250997 | None:intergenic | 35.0% | |
AGATATCTGCATTATGTGTG+TGG | - | chr4_4:74251009-74251028 | None:intergenic | 35.0% | |
TTATCTCCTCATGTTGTGAA+TGG | + | chr4_4:74251050-74251069 | Msa0702580:three_prime_UTR | 35.0% | |
AAGTGAATAGTTCACTTCCA+AGG | - | chr4_4:74251192-74251211 | None:intergenic | 35.0% | |
TGGAAGTGAACTATTCACTT+TGG | + | chr4_4:74251192-74251211 | Msa0702580:intron | 35.0% | |
AAGTGAACTATTCACTTTGG+AGG | + | chr4_4:74251195-74251214 | Msa0702580:intron | 35.0% | |
AGTGAACTATTCACTTTGGA+GGG | + | chr4_4:74251196-74251215 | Msa0702580:intron | 35.0% | |
ATGAGACCATGACTGATATT+CGG | - | chr4_4:74251301-74251320 | None:intergenic | 35.0% | |
! | AGTATCGAACATATAGGTGT+AGG | - | chr4_4:74251623-74251642 | None:intergenic | 35.0% |
! | AGAAAGATTGCTGTTGCAAT+GGG | - | chr4_4:74251744-74251763 | None:intergenic | 35.0% |
! | AAGAAAGATTGCTGTTGCAA+TGG | - | chr4_4:74251745-74251764 | None:intergenic | 35.0% |
AAACTGTGTCAGGTTACAAT+CGG | - | chr4_4:74251860-74251879 | None:intergenic | 35.0% | |
AAAATACCCAAGGATGAAAC+TGG | - | chr4_4:74251922-74251941 | None:intergenic | 35.0% | |
TTGCGAAGTTATTTGATCTG+CGG | + | chr4_4:74251964-74251983 | Msa0702580:three_prime_UTR | 35.0% | |
AATCAAAAGCCATTATGCGA+AGG | - | chr4_4:74252005-74252024 | None:intergenic | 35.0% | |
!!! | TTTTGATTTTGCATCAGCCA+TGG | + | chr4_4:74252017-74252036 | Msa0702580:three_prime_UTR | 35.0% |
CAGATTTCTGAGTTGCAAGT+AGG | + | chr4_4:74246062-74246081 | Msa0702580:intron | 40.0% | |
ATACTATGCATATGTGGCAG+AGG | + | chr4_4:74246518-74246537 | Msa0702580:intron | 40.0% | |
! | AACACCAAAGCGTTTGATGA+GGG | + | chr4_4:74246542-74246561 | Msa0702580:CDS | 40.0% |
AAAAGGAATATGGGGGTTGA+AGG | + | chr4_4:74247005-74247024 | Msa0702580:CDS | 40.0% | |
GGTTGAAGGAAGAAACAGAA+AGG | + | chr4_4:74247019-74247038 | Msa0702580:CDS | 40.0% | |
CCAAAATCTTGTGATCAACC+CGG | + | chr4_4:74247055-74247074 | Msa0702580:CDS | 40.0% | |
TGTTCGTGTGCATGATTACA+TGG | + | chr4_4:74247682-74247701 | Msa0702580:CDS | 40.0% | |
ACTGGTTGATTGAAGTGTAC+AGG | + | chr4_4:74247750-74247769 | Msa0702580:intron | 40.0% | |
CAGGAAATTTGAACTCATGC+TGG | + | chr4_4:74247769-74247788 | Msa0702580:intron | 40.0% | |
GTTTGCATCGCTACGTATTA+GGG | + | chr4_4:74247958-74247977 | Msa0702580:intron | 40.0% | |
AAACGATTACCTCTCTGTTG+TGG | + | chr4_4:74248119-74248138 | Msa0702580:intron | 40.0% | |
AACGATTACCTCTCTGTTGT+GGG | + | chr4_4:74248120-74248139 | Msa0702580:intron | 40.0% | |
GTGTTGGAACTTGAGTTTCA+AGG | + | chr4_4:74248410-74248429 | Msa0702580:CDS | 40.0% | |
TCAAGCAACTAAAAAAGGGG+TGG | - | chr4_4:74248472-74248491 | None:intergenic | 40.0% | |
! | GGTGTACCAATTTTCAGAGT+TGG | + | chr4_4:74248538-74248557 | Msa0702580:intron | 40.0% |
! | TACAGGCCAACTCTGAAAAT+TGG | - | chr4_4:74248547-74248566 | None:intergenic | 40.0% |
! | ACCAGTAAGAAGAGGAGTAT+CGG | - | chr4_4:74248604-74248623 | None:intergenic | 40.0% |
ATCCTTCACTCAGACTACTA+AGG | - | chr4_4:74248678-74248697 | None:intergenic | 40.0% | |
ACACAACCAGAACTATCACT+TGG | - | chr4_4:74248745-74248764 | None:intergenic | 40.0% | |
! | TTCTGGTTGTGTCTTTCACT+TGG | + | chr4_4:74248753-74248772 | Msa0702580:intron | 40.0% |
GGATCATGAAACTCTCATTC+TGG | - | chr4_4:74248829-74248848 | None:intergenic | 40.0% | |
TATTACCCAATGTCATCTGC+AGG | + | chr4_4:74248863-74248882 | Msa0702580:intron | 40.0% | |
GTTTACCTGCAGATGACATT+GGG | - | chr4_4:74248871-74248890 | None:intergenic | 40.0% | |
TGTTTACCTGCAGATGACAT+TGG | - | chr4_4:74248872-74248891 | None:intergenic | 40.0% | |
GAATTACTAAGACCGATGAG+AGG | - | chr4_4:74248984-74249003 | None:intergenic | 40.0% | |
! | TTGTTCTAGATGGTTACACC+TGG | + | chr4_4:74249290-74249309 | Msa0702580:intron | 40.0% |
TTTCGTTGTGTCAACGTTGT+TGG | + | chr4_4:74249343-74249362 | Msa0702580:intron | 40.0% | |
! | GTTGGCTTCTTTCAAGTGAT+AGG | + | chr4_4:74249361-74249380 | Msa0702580:intron | 40.0% |
AAAAGAAATGCTCTGTCAGC+TGG | + | chr4_4:74249532-74249551 | Msa0702580:intron | 40.0% | |
GACTGAATCAGGAAAAAGTG+AGG | + | chr4_4:74249591-74249610 | Msa0702580:intron | 40.0% | |
! | CAGATTTTCCTGAATGTTGC+TGG | - | chr4_4:74250028-74250047 | None:intergenic | 40.0% |
TATATGCTATATCTGCGCCA+AGG | - | chr4_4:74250146-74250165 | None:intergenic | 40.0% | |
! | CTGGAAATGAGTCGGTATTT+TGG | - | chr4_4:74250194-74250213 | None:intergenic | 40.0% |
!! | CAAAATACCGACTCATTTCC+AGG | + | chr4_4:74250192-74250211 | Msa0702580:intron | 40.0% |
AAGGAATCCTGGAAATGAGT+CGG | - | chr4_4:74250202-74250221 | None:intergenic | 40.0% | |
GGATAATGCACAATATGTGC+AGG | - | chr4_4:74250669-74250688 | None:intergenic | 40.0% | |
GAGCTTAGCTCATTTGGTAT+GGG | - | chr4_4:74250690-74250709 | None:intergenic | 40.0% | |
TGAGCTTAGCTCATTTGGTA+TGG | - | chr4_4:74250691-74250710 | None:intergenic | 40.0% | |
TACCAAATGAGCTAAGCTCA+TGG | + | chr4_4:74250691-74250710 | Msa0702580:intron | 40.0% | |
ACCAAATGAGCTAAGCTCAT+GGG | + | chr4_4:74250692-74250711 | Msa0702580:intron | 40.0% | |
ACATTCAGCAAGGAAACCTA+TGG | - | chr4_4:74250968-74250987 | None:intergenic | 40.0% | |
TCACATCCATTCACAACATG+AGG | - | chr4_4:74251059-74251078 | None:intergenic | 40.0% | |
! | GTTTGATAGTTGAACTGCCA+TGG | + | chr4_4:74251108-74251127 | Msa0702580:three_prime_UTR | 40.0% |
CTTATCCAAGGATGTAAGTG+AGG | + | chr4_4:74251143-74251162 | Msa0702580:intron | 40.0% | |
AAGATCCTCACTTACATCCT+TGG | - | chr4_4:74251151-74251170 | None:intergenic | 40.0% | |
ATGTGTCCGAATATCAGTCA+TGG | + | chr4_4:74251292-74251311 | Msa0702580:intron | 40.0% | |
GAATATCAGTCATGGTCTCA+TGG | + | chr4_4:74251300-74251319 | Msa0702580:intron | 40.0% | |
CGAACATATAGGTGTAGGAT+AGG | - | chr4_4:74251618-74251637 | None:intergenic | 40.0% | |
! | TTGCTGTTGCAATGGGAATA+AGG | - | chr4_4:74251737-74251756 | None:intergenic | 40.0% |
TTCATCAGAAGAACGCTTTG+CGG | - | chr4_4:74251812-74251831 | None:intergenic | 40.0% | |
AATTTCTTTGCCCAACTTGG+CGG | - | chr4_4:74251887-74251906 | None:intergenic | 40.0% | |
AAGTGACCAGTTTCATCCTT+GGG | + | chr4_4:74251913-74251932 | Msa0702580:three_prime_UTR | 40.0% | |
GCAACTCAGAAATCTGTCAC+TGG | - | chr4_4:74246058-74246077 | None:intergenic | 45.0% | |
ACTAGAGTGGGAATTGGCAA+GGG | + | chr4_4:74246206-74246225 | Msa0702580:CDS | 45.0% | |
! | CAACACCAAAGCGTTTGATG+AGG | + | chr4_4:74246541-74246560 | Msa0702580:CDS | 45.0% |
ATCACCCTCATCAAACGCTT+TGG | - | chr4_4:74246549-74246568 | None:intergenic | 45.0% | |
! | AAAGCGTTTGATGAGGGTGA+TGG | + | chr4_4:74246548-74246567 | Msa0702580:CDS | 45.0% |
AGATGTTCCAAAGTGAGTCC+TGG | - | chr4_4:74246579-74246598 | None:intergenic | 45.0% | |
ATGTTTAGTGAATCCACGGG+TGG | + | chr4_4:74246878-74246897 | Msa0702580:intron | 45.0% | |
!!! | CCGGGTTGATCACAAGATTT+TGG | - | chr4_4:74247058-74247077 | None:intergenic | 45.0% |
ATGTCACCAAATGCCTCACA+AGG | + | chr4_4:74247099-74247118 | Msa0702580:CDS | 45.0% | |
TATGGAATCAGCACCTTGTG+AGG | - | chr4_4:74247115-74247134 | None:intergenic | 45.0% | |
TACCTTGTTCTTCTCGGTTG+CGG | - | chr4_4:74247249-74247268 | None:intergenic | 45.0% | |
AGAACATTGTTCCTGCAGCA+AGG | + | chr4_4:74247378-74247397 | Msa0702580:intron | 45.0% | |
GAACATTGTTCCTGCAGCAA+GGG | + | chr4_4:74247379-74247398 | Msa0702580:intron | 45.0% | |
TAGAGTTGTGCCCAAGGATT+TGG | + | chr4_4:74247472-74247491 | Msa0702580:CDS | 45.0% | |
AGGCATTCGAGGTTACTTGA+AGG | + | chr4_4:74247921-74247940 | Msa0702580:intron | 45.0% | |
GGCATTCGAGGTTACTTGAA+GGG | + | chr4_4:74247922-74247941 | Msa0702580:intron | 45.0% | |
CTTGAAGGGTAACGTACCAT+AGG | + | chr4_4:74247936-74247955 | Msa0702580:intron | 45.0% | |
TACGTAGCGATGCAAACCTA+TGG | - | chr4_4:74247955-74247974 | None:intergenic | 45.0% | |
GGTTTGCATCGCTACGTATT+AGG | + | chr4_4:74247957-74247976 | Msa0702580:intron | 45.0% | |
TTCCTCTCTTACCATGCTCA+AGG | - | chr4_4:74248379-74248398 | None:intergenic | 45.0% | |
AAAGAAGTTCACCATGCCTC+AGG | + | chr4_4:74248439-74248458 | Msa0702580:CDS | 45.0% | |
TTCACCATGCCTCAGGTTTA+TGG | + | chr4_4:74248446-74248465 | Msa0702580:intron | 45.0% | |
!! | AGTTTTGATGCAACAGGCCT+CGG | - | chr4_4:74248576-74248595 | None:intergenic | 45.0% |
!! | GCTGCAAGTTTTGATGCAAC+AGG | - | chr4_4:74248582-74248601 | None:intergenic | 45.0% |
TACTCCTCTTCTTACTGGTC+AGG | + | chr4_4:74248605-74248624 | Msa0702580:CDS | 45.0% | |
CTTACCTGACCAGTAAGAAG+AGG | - | chr4_4:74248612-74248631 | None:intergenic | 45.0% | |
TAAGGCAATGCATGCAAGCT+AGG | - | chr4_4:74248660-74248679 | None:intergenic | 45.0% | |
TGCCTTAGTAGTCTGAGTGA+AGG | + | chr4_4:74248673-74248692 | Msa0702580:intron | 45.0% | |
GGTGAACCAAGTGATAGTTC+TGG | + | chr4_4:74248736-74248755 | Msa0702580:intron | 45.0% | |
TGAGCACACAGATTTGACAG+AGG | - | chr4_4:74249034-74249053 | None:intergenic | 45.0% | |
TACACCTGGTAGCACAATTG+TGG | + | chr4_4:74249304-74249323 | Msa0702580:intron | 45.0% | |
TGAACCACAATTGTGCTACC+AGG | - | chr4_4:74249311-74249330 | None:intergenic | 45.0% | |
GGAGATCTGCCAAGTTCATT+TGG | + | chr4_4:74249719-74249738 | Msa0702580:intron | 45.0% | |
!! | GCAAGATATTTTTGCGGCCT+TGG | + | chr4_4:74250126-74250145 | Msa0702580:intron | 45.0% |
TGTGCAATCACTGCAACAAC+AGG | + | chr4_4:74250335-74250354 | Msa0702580:three_prime_UTR | 45.0% | |
ATCACTGCAACAACAGGTTG+AGG | + | chr4_4:74250341-74250360 | Msa0702580:three_prime_UTR | 45.0% | |
GTGCACATGCTTAACACCAA+CGG | + | chr4_4:74250444-74250463 | Msa0702580:intron | 45.0% | |
! | AGATGAATATGTGGGGTGTC+CGG | + | chr4_4:74250627-74250646 | Msa0702580:intron | 45.0% |
CCAAATGAGCTAAGCTCATG+GGG | + | chr4_4:74250693-74250712 | Msa0702580:intron | 45.0% | |
ATGAGAATGTGAATCGCCCT+AGG | - | chr4_4:74250780-74250799 | None:intergenic | 45.0% | |
TCAGCAAGGAAACCTATGGA+AGG | - | chr4_4:74250964-74250983 | None:intergenic | 45.0% | |
! | TGGATCTTCTCATCGACTGT+TGG | + | chr4_4:74251320-74251339 | Msa0702580:intron | 45.0% |
TCATCAGAAGAACGCTTTGC+GGG | - | chr4_4:74251811-74251830 | None:intergenic | 45.0% | |
! | ACAGTTTTCTTCCGCCAAGT+TGG | + | chr4_4:74251873-74251892 | Msa0702580:three_prime_UTR | 45.0% |
! | CAGTTTTCTTCCGCCAAGTT+GGG | + | chr4_4:74251874-74251893 | Msa0702580:three_prime_UTR | 45.0% |
GAAGTGACCAGTTTCATCCT+TGG | + | chr4_4:74251912-74251931 | Msa0702580:three_prime_UTR | 45.0% | |
!! | AAAAAAAAAACAAAATATAA+TGG | - | chr4_4:74250576-74250595 | None:intergenic | 5.0% |
AGGAGAGAGGACACTAGAGT+GGG | + | chr4_4:74246194-74246213 | Msa0702580:CDS | 50.0% | |
GAGGACACTAGAGTGGGAAT+TGG | + | chr4_4:74246200-74246219 | Msa0702580:CDS | 50.0% | |
CACTAGAGTGGGAATTGGCA+AGG | + | chr4_4:74246205-74246224 | Msa0702580:CDS | 50.0% | |
!! | ATGAGGGTGATGGAGATTCC+AGG | + | chr4_4:74246558-74246577 | Msa0702580:CDS | 50.0% |
GGAGATTCCAGGACTCACTT+TGG | + | chr4_4:74246569-74246588 | Msa0702580:CDS | 50.0% | |
!! | TACAACAAAGGTACCACCCG+TGG | - | chr4_4:74246894-74246913 | None:intergenic | 50.0% |
CATTAGCACCAAGATCTGCC+GGG | - | chr4_4:74247076-74247095 | None:intergenic | 50.0% | |
GCATTAGCACCAAGATCTGC+CGG | - | chr4_4:74247077-74247096 | None:intergenic | 50.0% | |
! | TCAGCACCTTGTGAGGCATT+TGG | - | chr4_4:74247108-74247127 | None:intergenic | 50.0% |
TTGTTGCAGGGCTCAGTTAG+AGG | + | chr4_4:74247211-74247230 | Msa0702580:intron | 50.0% | |
TGCTTGTAGAGTTGTGCCCA+AGG | + | chr4_4:74247466-74247485 | Msa0702580:CDS | 50.0% | |
!! | GGGAATGAAGAAGGCATTCG+AGG | + | chr4_4:74247910-74247929 | Msa0702580:intron | 50.0% |
CAAGTCTTCCCACAACAGAG+AGG | - | chr4_4:74248131-74248150 | None:intergenic | 50.0% | |
! | TTTCTTGGTGGCCTTGAGCA+TGG | + | chr4_4:74248365-74248384 | Msa0702580:CDS | 50.0% |
GCCGATACTCCTCTTCTTAC+TGG | + | chr4_4:74248600-74248619 | Msa0702580:CDS | 50.0% | |
GGTTGTGTCTTTCACTTGGC+AGG | + | chr4_4:74248757-74248776 | Msa0702580:intron | 50.0% | |
AGCTCAGTCAGGTATGTGAC+TGG | - | chr4_4:74249928-74249947 | None:intergenic | 50.0% | |
CAATGAGTGGAAGCTCAGTC+AGG | - | chr4_4:74249939-74249958 | None:intergenic | 50.0% | |
GCATGTGCACAGTGCAAAAC+AGG | - | chr4_4:74250434-74250453 | None:intergenic | 50.0% | |
! | GATGAATATGTGGGGTGTCC+GGG | + | chr4_4:74250628-74250647 | Msa0702580:intron | 50.0% |
! | ATGAATATGTGGGGTGTCCG+GGG | + | chr4_4:74250629-74250648 | Msa0702580:intron | 50.0% |
CCCCATGAGCTTAGCTCATT+TGG | - | chr4_4:74250696-74250715 | None:intergenic | 50.0% | |
TTCTCAACCCTCAACCTCCT+AGG | + | chr4_4:74250760-74250779 | Msa0702580:intron | 50.0% | |
TCTCAACCCTCAACCTCCTA+GGG | + | chr4_4:74250761-74250780 | Msa0702580:intron | 50.0% | |
AGAATGTGAATCGCCCTAGG+AGG | - | chr4_4:74250777-74250796 | None:intergenic | 50.0% | |
TGGCGGAAGAAAACTGTGTC+AGG | - | chr4_4:74251870-74251889 | None:intergenic | 50.0% | |
!!! | AGCCATGGCTGCTTTTGGTT+AGG | + | chr4_4:74252032-74252051 | Msa0702580:three_prime_UTR | 50.0% |
CACCTAACCAAAAGCAGCCA+TGG | - | chr4_4:74252037-74252056 | None:intergenic | 50.0% | |
GAGGAGAGAGGACACTAGAG+TGG | + | chr4_4:74246193-74246212 | Msa0702580:CDS | 55.0% | |
GTGATCAACCCGGCAGATCT+TGG | + | chr4_4:74247065-74247084 | Msa0702580:CDS | 55.0% | |
AGCCGCAACCGAGAAGAACA+AGG | + | chr4_4:74247244-74247263 | Msa0702580:CDS | 55.0% | |
CATTGTTCCTGCAGCAAGGG+TGG | + | chr4_4:74247382-74247401 | Msa0702580:CDS | 55.0% | |
GGCCTTGAGCATGGTAAGAG+AGG | + | chr4_4:74248374-74248393 | Msa0702580:CDS | 55.0% | |
GTGGCCATAAACCTGAGGCA+TGG | - | chr4_4:74248453-74248472 | None:intergenic | 55.0% | |
AAGGGGTGGCCATAAACCTG+AGG | - | chr4_4:74248458-74248477 | None:intergenic | 55.0% | |
TGCACAATATGTGCAGGGGC+CGG | - | chr4_4:74250663-74250682 | None:intergenic | 55.0% | |
GAATCGCCCTAGGAGGTTGA+GGG | - | chr4_4:74250770-74250789 | None:intergenic | 55.0% | |
TGAATCGCCCTAGGAGGTTG+AGG | - | chr4_4:74250771-74250790 | None:intergenic | 55.0% | |
TGAACTGCCATGGACCAGAG+CGG | + | chr4_4:74251118-74251137 | Msa0702580:three_prime_UTR | 55.0% | |
ATAAGAGCCGCTCTGGTCCA+TGG | - | chr4_4:74251128-74251147 | None:intergenic | 55.0% | |
ACCAGAGCGGCTCTTATCCA+AGG | + | chr4_4:74251131-74251150 | Msa0702580:three_prime_UTR | 55.0% | |
TCCTTGGATAAGAGCCGCTC+TGG | - | chr4_4:74251135-74251154 | None:intergenic | 55.0% | |
!! | GCATCAGCCATGGCTGCTTT+TGG | + | chr4_4:74252027-74252046 | Msa0702580:three_prime_UTR | 55.0% |
GCATGTTCCACCCTTGCTGC+AGG | - | chr4_4:74247392-74247411 | None:intergenic | 60.0% | |
! | GTTGGCCTGTACGTACACCG+AGG | + | chr4_4:74248556-74248575 | Msa0702580:CDS | 60.0% |
! | ACAGGCCTCGGTGTACGTAC+AGG | - | chr4_4:74248564-74248583 | None:intergenic | 60.0% |
CACAATATGTGCAGGGGCCG+GGG | - | chr4_4:74250661-74250680 | None:intergenic | 60.0% | |
GCACAATATGTGCAGGGGCC+GGG | - | chr4_4:74250662-74250681 | None:intergenic | 60.0% | |
GGTGTCCGGGGTTCGAACCC+CGG | + | chr4_4:74250641-74250660 | Msa0702580:intron | 70.0% | |
AGGGGCCGGGGTTCGAACCC+CGG | - | chr4_4:74250649-74250668 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 74246017 | 74252236 | 74246017 | ID=Msa0702580;Name=Msa0702580 |
chr4_4 | mRNA | 74246017 | 74252236 | 74246017 | ID=Msa0702580-mRNA-1;Parent=Msa0702580;Name=Msa0702580-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0.57|0.73|0.93|0.78|0.8|15|749|305 |
chr4_4 | exon | 74246017 | 74246047 | 74246017 | ID=Msa0702580-mRNA-1:exon:23046;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74246193 | 74246261 | 74246193 | ID=Msa0702580-mRNA-1:exon:23047;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74246538 | 74246614 | 74246538 | ID=Msa0702580-mRNA-1:exon:23048;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74246699 | 74246720 | 74246699 | ID=Msa0702580-mRNA-1:exon:23049;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74246994 | 74247120 | 74246994 | ID=Msa0702580-mRNA-1:exon:23050;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74247220 | 74247265 | 74247220 | ID=Msa0702580-mRNA-1:exon:23051;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74247380 | 74247583 | 74247380 | ID=Msa0702580-mRNA-1:exon:23052;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74247677 | 74247753 | 74247677 | ID=Msa0702580-mRNA-1:exon:23053;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74247979 | 74248027 | 74247979 | ID=Msa0702580-mRNA-1:exon:23054;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74248332 | 74248460 | 74248332 | ID=Msa0702580-mRNA-1:exon:23055;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74248555 | 74248626 | 74248555 | ID=Msa0702580-mRNA-1:exon:23056;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74249897 | 74249962 | 74249897 | ID=Msa0702580-mRNA-1:exon:23057;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74250294 | 74250362 | 74250294 | ID=Msa0702580-mRNA-1:exon:23058;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74250971 | 74251155 | 74250971 | ID=Msa0702580-mRNA-1:exon:23059;Parent=Msa0702580-mRNA-1 |
chr4_4 | exon | 74251793 | 74252236 | 74251793 | ID=Msa0702580-mRNA-1:exon:23060;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74246017 | 74246047 | 74246017 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74246193 | 74246261 | 74246193 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74246538 | 74246614 | 74246538 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74246699 | 74246720 | 74246699 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74246994 | 74247120 | 74246994 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74247220 | 74247265 | 74247220 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74247380 | 74247583 | 74247380 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74247677 | 74247753 | 74247677 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74247979 | 74248027 | 74247979 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74248332 | 74248460 | 74248332 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74248555 | 74248626 | 74248555 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | CDS | 74249897 | 74249911 | 74249897 | ID=Msa0702580-mRNA-1:cds;Parent=Msa0702580-mRNA-1 |
chr4_4 | three_prime_UTR | 74249912 | 74249962 | 74249912 | ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1 |
chr4_4 | three_prime_UTR | 74250294 | 74250362 | 74250294 | ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1 |
chr4_4 | three_prime_UTR | 74250971 | 74251155 | 74250971 | ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1 |
chr4_4 | three_prime_UTR | 74251793 | 74252236 | 74251793 | ID=Msa0702580-mRNA-1:three_prime_utr;Parent=Msa0702580-mRNA-1 |
Gene Sequence |
Protein sequence |