Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364990 | ACJ85631.1 | 69.620 | 79 | 16 | 2 | 110 | 188 | 131 | 201 | 1.75e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364990 | sp|O65015|AMYB_TRIRP | 77.778 | 54 | 12 | 0 | 134 | 187 | 154 | 207 | 2.41e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364990 | B7FLJ7 | 69.620 | 79 | 16 | 2 | 110 | 188 | 131 | 201 | 8.34e-25 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036370 | Msa0364990 | 0.808045 | 3.756695e-50 | -8.615850e-47 |
| Msa0047280 | Msa0364990 | 0.800972 | 1.121592e-48 | -8.615850e-47 |
| Msa0049390 | Msa0364990 | 0.801550 | 8.539397e-49 | -8.615850e-47 |
| Msa0052630 | Msa0364990 | 0.800801 | 1.215199e-48 | -8.615850e-47 |
| Msa0053690 | Msa0364990 | 0.883532 | 4.145096e-71 | -8.615850e-47 |
| Msa0053700 | Msa0364990 | 0.887940 | 9.172885e-73 | -8.615850e-47 |
| Msa0065010 | Msa0364990 | 0.802532 | 5.366232e-49 | -8.615850e-47 |
| Msa0111330 | Msa0364990 | 0.808952 | 2.404430e-50 | -8.615850e-47 |
| Msa0139990 | Msa0364990 | 0.800358 | 1.496505e-48 | -8.615850e-47 |
| Msa0164370 | Msa0364990 | 0.923468 | 2.552813e-89 | -8.615850e-47 |
| Msa0183460 | Msa0364990 | 0.805057 | 1.604452e-49 | -8.615850e-47 |
| Msa0183870 | Msa0364990 | 0.816868 | 4.430539e-52 | -8.615850e-47 |
| Msa0193600 | Msa0364990 | 0.822079 | 2.870415e-53 | -8.615850e-47 |
| Msa0364990 | Msa0414020 | 0.925382 | 1.978481e-90 | -8.615850e-47 |
| Msa0364990 | Msa0431770 | 0.847276 | 1.280720e-59 | -8.615850e-47 |
| Msa0364990 | Msa0458640 | 0.817477 | 3.231368e-52 | -8.615850e-47 |
| Msa0364990 | Msa0539050 | 0.802277 | 6.056542e-49 | -8.615850e-47 |
| Msa0364990 | Msa0539060 | 0.801338 | 9.440565e-49 | -8.615850e-47 |
| Msa0364990 | Msa0576730 | 0.846113 | 2.663952e-59 | -8.615850e-47 |
| Msa0364990 | Msa0659140 | 0.801834 | 7.468307e-49 | -8.615850e-47 |
| Msa0364990 | Msa0659990 | 0.802567 | 5.276388e-49 | -8.615850e-47 |
| Msa0364990 | Msa0687230 | 0.806917 | 6.517703e-50 | -8.615850e-47 |
| Msa0364990 | Msa0699810 | 0.802942 | 4.415714e-49 | -8.615850e-47 |
| Msa0364990 | Msa0702150 | 0.854028 | 1.617103e-61 | -8.615850e-47 |
| Msa0364990 | Msa0702270 | 0.849570 | 2.970133e-60 | -8.615850e-47 |
| Msa0364990 | Msa0702580 | 0.816465 | 5.452752e-52 | -8.615850e-47 |
| Msa0364990 | Msa0702670 | 0.810080 | 1.376980e-50 | -8.615850e-47 |
| Msa0364990 | Msa0747170 | 0.827420 | 1.580197e-54 | -8.615850e-47 |
| Msa0364990 | Msa0792780 | 0.804792 | 1.822064e-49 | -8.615850e-47 |
| Msa0364990 | Msa0798090 | 0.853619 | 2.120656e-61 | -8.615850e-47 |
| Msa0364990 | Msa0798100 | 0.829400 | 5.258692e-55 | -8.615850e-47 |
| Msa0364990 | Msa0799480 | 0.939719 | 7.916921e-100 | -8.615850e-47 |
| Msa0364990 | Msa0943270 | 0.807313 | 5.372359e-50 | -8.615850e-47 |
| Msa0364990 | Msa0990830 | 0.827280 | 1.706712e-54 | -8.615850e-47 |
| Msa0364990 | Msa1020100 | 0.819650 | 1.039044e-52 | -8.615850e-47 |
| Msa0364990 | Msa1025940 | 0.801277 | 9.713512e-49 | -8.615850e-47 |
| Msa0364990 | Msa1059310 | 0.828323 | 9.581389e-55 | -8.615850e-47 |
| Msa0364990 | Msa1067070 | 0.913320 | 7.054306e-84 | -8.615850e-47 |
| Msa0364990 | Msa1070390 | 0.804705 | 1.899796e-49 | -8.615850e-47 |
| Msa0364990 | Msa1154490 | 0.813399 | 2.610400e-51 | -8.615850e-47 |
| Msa0364990 | Msa1211830 | 0.801984 | 6.957546e-49 | -8.615850e-47 |
| Msa0364990 | Msa1253400 | 0.906177 | 1.959049e-80 | -8.615850e-47 |
| Msa0364990 | Msa1253810 | 0.857686 | 1.377881e-62 | -8.615850e-47 |
| Msa0364990 | Msa1279590 | 0.884350 | 2.067874e-71 | -8.615850e-47 |
| Msa0364990 | Msa1289300 | 0.916920 | 9.956353e-86 | -8.615850e-47 |
| Msa0364990 | Msa1297600 | 0.917586 | 4.434792e-86 | -8.615850e-47 |
| Msa0364990 | Msa1320580 | 0.823094 | 1.666852e-53 | -8.615850e-47 |
| Msa0364990 | Msa1323800 | 0.801284 | 9.682323e-49 | -8.615850e-47 |
| Msa0364990 | Msa1323990 | 0.819920 | 9.016186e-53 | -8.615850e-47 |
| Msa0364990 | Msa1325930 | 0.805585 | 1.243470e-49 | -8.615850e-47 |
| Msa0273650 | Msa0364990 | 0.818474 | 1.923244e-52 | -8.615850e-47 |
| Msa0319330 | Msa0364990 | 0.807363 | 5.242823e-50 | -8.615850e-47 |
| Msa0337500 | Msa0364990 | 0.873711 | 1.190111e-67 | -8.615850e-47 |
| Msa0337510 | Msa0364990 | 0.921358 | 3.965913e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364990 | MtrunA17_Chr2g0323051 | 61.798 | 89 | 32 | 2 | 134 | 222 | 227 | 313 | 2.37e-27 | 109 |
| Msa0364990 | MtrunA17_Chr3g0140681 | 75.000 | 60 | 9 | 1 | 81 | 134 | 194 | 253 | 1.38e-22 | 95.1 |
| Msa0364990 | MtrunA17_Chr4g0023601 | 70.370 | 54 | 16 | 0 | 134 | 187 | 154 | 207 | 1.15e-20 | 90.5 |
| Msa0364990 | MtrunA17_Chr5g0400001 | 56.364 | 55 | 22 | 2 | 134 | 187 | 228 | 281 | 7.30e-13 | 67.8 |
| Msa0364990 | MtrunA17_Chr5g0399991 | 56.364 | 55 | 22 | 2 | 134 | 187 | 230 | 283 | 7.94e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364990 | AT2G32290.1 | 52.222 | 90 | 41 | 2 | 134 | 223 | 219 | 306 | 9.59e-22 | 94.0 |
| Msa0364990 | AT4G15210.3 | 66.667 | 54 | 18 | 0 | 134 | 187 | 103 | 156 | 8.35e-20 | 88.2 |
| Msa0364990 | AT4G15210.4 | 66.667 | 54 | 18 | 0 | 134 | 187 | 103 | 156 | 8.35e-20 | 88.2 |
| Msa0364990 | AT4G15210.2 | 66.667 | 54 | 18 | 0 | 134 | 187 | 156 | 209 | 8.83e-20 | 87.8 |
| Msa0364990 | AT4G15210.1 | 66.667 | 54 | 18 | 0 | 134 | 187 | 156 | 209 | 9.50e-20 | 88.2 |
| Msa0364990 | AT4G00490.1 | 27.072 | 181 | 106 | 4 | 33 | 187 | 109 | 289 | 3.95e-13 | 68.9 |
| Msa0364990 | AT2G45880.1 | 31.707 | 123 | 61 | 3 | 88 | 187 | 320 | 442 | 7.59e-12 | 65.1 |
| Msa0364990 | AT5G45300.3 | 46.296 | 54 | 29 | 0 | 134 | 187 | 410 | 463 | 2.36e-11 | 63.5 |
| Msa0364990 | AT5G45300.2 | 46.296 | 54 | 29 | 0 | 134 | 187 | 394 | 447 | 2.47e-11 | 63.5 |
| Msa0364990 | AT5G45300.1 | 46.296 | 54 | 29 | 0 | 134 | 187 | 396 | 449 | 2.55e-11 | 63.5 |
Find 73 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATGTTTATAGATTAATT+AGG | 0.166605 | 3_1:+58544319 | Msa0364990:three_prime_UTR |
| TATGATAATTTAATCAAAAT+TGG | 0.267934 | 3_1:+58544390 | Msa0364990:three_prime_UTR |
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 3_1:+58543036 | Msa0364990:CDS |
| ATATGTTTATAGATTAATTA+GGG | 0.278241 | 3_1:+58544320 | Msa0364990:three_prime_UTR |
| CTTCAAATAGTCAGCCATTC+TGG | 0.282618 | 3_1:-58544171 | None:intergenic |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 3_1:+58541797 | Msa0364990:CDS |
| AAGCTTAATAGCAGCCTTAC+TGG | 0.305599 | 3_1:+58544347 | Msa0364990:three_prime_UTR |
| GAAGAGTTATAGAGAGAATA+TGG | 0.309022 | 3_1:+58543579 | Msa0364990:CDS |
| GGCTGGGTATTTCCTGGTAT+TGG | 0.319528 | 3_1:+58543694 | Msa0364990:CDS |
| GATGGAGGAAGAAGGGAAAT+TGG | 0.330889 | 3_1:+58538654 | None:intergenic |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 3_1:+58543002 | Msa0364990:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 3_1:+58543045 | Msa0364990:CDS |
| AATCCTTGACTCACCGCTTA+TGG | 0.358745 | 3_1:-58544060 | None:intergenic |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 3_1:-58541827 | None:intergenic |
| CCGCTTATGGTGACATCATA+AGG | 0.359764 | 3_1:-58544047 | None:intergenic |
| TCCCTCTCATGCATGATATC+TGG | 0.374941 | 3_1:-58544090 | None:intergenic |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 3_1:+58542988 | Msa0364990:intron |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 3_1:+58540959 | Msa0364990:intron |
| TGCCTAGGCTGGGTATTTCC+TGG | 0.407995 | 3_1:+58543688 | Msa0364990:CDS |
| AGAAGGGAAATTGGAGAAGA+AGG | 0.422017 | 3_1:+58538663 | Msa0364990:CDS |
| ATAAGGGCTGGTGCACCTAC+TGG | 0.427494 | 3_1:-58544030 | None:intergenic |
| AATTTCCCTTCTTCCTCCAT+CGG | 0.440960 | 3_1:-58538652 | None:intergenic |
| ATAGTCAGCCATTCTGGCTC+TGG | 0.443426 | 3_1:-58544165 | None:intergenic |
| TATATCTATATATATGTTCA+AGG | 0.447915 | 3_1:-58544255 | None:intergenic |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 3_1:+58541080 | Msa0364990:CDS |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 3_1:+58543028 | Msa0364990:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 3_1:+58543637 | Msa0364990:CDS |
| AAGAAGCCGATGGAGGAAGA+AGG | 0.492336 | 3_1:+58538646 | None:intergenic |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 3_1:+58543889 | Msa0364990:CDS |
| CGCTTATGGTGACATCATAA+GGG | 0.505983 | 3_1:-58544046 | None:intergenic |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 3_1:+58543046 | Msa0364990:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 3_1:+58543104 | Msa0364990:CDS |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 3_1:-58543835 | None:intergenic |
| TTGAGATTCCAGAGCCAGAA+TGG | 0.530384 | 3_1:+58544157 | Msa0364990:three_prime_UTR |
| TTGTCAAATATGAACCAGTA+AGG | 0.531051 | 3_1:-58544361 | None:intergenic |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 3_1:-58543652 | None:intergenic |
| ATAGACATTGAGGTAGGACT+TGG | 0.533283 | 3_1:+58543628 | Msa0364990:CDS |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 3_1:+58541253 | Msa0364990:intron |
| GTCGTTGCGTGCTGAACAAA+AGG | 0.535793 | 3_1:+58541034 | Msa0364990:CDS |
| AAATTGGAAATGCAGGGGAC+AGG | 0.536511 | 3_1:+58544004 | Msa0364990:intron |
| TATGGTGACATCATAAGGGC+TGG | 0.556208 | 3_1:-58544042 | None:intergenic |
| AATGGCTGACTATTTGAAGC+AGG | 0.562267 | 3_1:+58544175 | Msa0364990:three_prime_UTR |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 3_1:-58543108 | None:intergenic |
| ATGTTTATAGATTAATTAGG+GGG | 0.570090 | 3_1:+58544322 | Msa0364990:three_prime_UTR |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 3_1:+58543853 | Msa0364990:CDS |
| TCACCATAAGCGGTGAGTCA+AGG | 0.578434 | 3_1:+58544057 | Msa0364990:CDS |
| CCTTATGATGTCACCATAAG+CGG | 0.579231 | 3_1:+58544047 | Msa0364990:CDS |
| AGAAGCCGATGGAGGAAGAA+GGG | 0.579655 | 3_1:+58538647 | None:intergenic |
| TTGCGTGCTGAACAAAAGGA+TGG | 0.589695 | 3_1:+58541038 | Msa0364990:CDS |
| TGAGCTGCTGATAGACATTG+AGG | 0.592781 | 3_1:+58543618 | Msa0364990:CDS |
| GCCAGATATCATGCATGAGA+GGG | 0.594778 | 3_1:+58544089 | Msa0364990:exon |
| GGCCAGATATCATGCATGAG+AGG | 0.594930 | 3_1:+58544088 | Msa0364990:exon |
| TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 3_1:+58541088 | Msa0364990:CDS |
| GAATGCGATTGAAGCGCGCA+TGG | 0.609128 | 3_1:+58541289 | Msa0364990:CDS |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 3_1:+58543885 | Msa0364990:CDS |
| CAGAGATCCTTAAAAGCTCG+AGG | 0.621293 | 3_1:+58544133 | Msa0364990:three_prime_UTR |
| CTGCTGATAGACATTGAGGT+AGG | 0.627507 | 3_1:+58543622 | Msa0364990:CDS |
| TATTTGAAGCAGGATGGCAA+AGG | 0.629381 | 3_1:+58544185 | Msa0364990:three_prime_UTR |
| ACATTAAATTCTCCAATACC+AGG | 0.631717 | 3_1:-58543706 | None:intergenic |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 3_1:-58543651 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 3_1:+58541083 | Msa0364990:CDS |
| TACCAGGAAATACCCAGCCT+AGG | 0.637604 | 3_1:-58543690 | None:intergenic |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 3_1:+58541049 | Msa0364990:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 3_1:+58541084 | Msa0364990:CDS |
| GCTGACTATTTGAAGCAGGA+TGG | 0.643683 | 3_1:+58544179 | Msa0364990:three_prime_UTR |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 3_1:-58543105 | None:intergenic |
| TATGTTTATAGATTAATTAG+GGG | 0.649576 | 3_1:+58544321 | Msa0364990:three_prime_UTR |
| CGGTGAGTCAAGGATTAGTG+AGG | 0.671978 | 3_1:+58544067 | Msa0364990:CDS |
| GCAGGGGACAGGCTTCCAGT+AGG | 0.671994 | 3_1:+58544015 | Msa0364990:intron |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 3_1:-58542997 | None:intergenic |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 3_1:+58541064 | Msa0364990:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 3_1:+58541046 | Msa0364990:CDS |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 3_1:+58541068 | Msa0364990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGTTTATAGATTAATT+AGG | + | chr3_1:58544319-58544338 | Msa0364990:three_prime_UTR | 10.0% |
| !! | ATATGTTTATAGATTAATTA+GGG | + | chr3_1:58544320-58544339 | Msa0364990:three_prime_UTR | 10.0% |
| !! | TGATTATAATGTAAAATAAG+TGG | + | chr3_1:58540557-58540576 | Msa0364990:intron | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | + | chr3_1:58541678-58541697 | Msa0364990:intron | 15.0% |
| !! | AAAATAAAACAACTTTCAAA+TGG | - | chr3_1:58541942-58541961 | None:intergenic | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | + | chr3_1:58541954-58541973 | Msa0364990:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | + | chr3_1:58542148-58542167 | Msa0364990:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | - | chr3_1:58543139-58543158 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | + | chr3_1:58543138-58543157 | Msa0364990:intron | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | - | chr3_1:58543454-58543473 | None:intergenic | 15.0% |
| !!! | CATAACAAATTTTAGTAAAA+TGG | - | chr3_1:58543955-58543974 | None:intergenic | 15.0% |
| !! | TGGAATATTTATATGAAAAT+TGG | + | chr3_1:58543988-58544007 | Msa0364990:intron | 15.0% |
| !! | TATATCTATATATATGTTCA+AGG | - | chr3_1:58544258-58544277 | None:intergenic | 15.0% |
| !! | TATGTTTATAGATTAATTAG+GGG | + | chr3_1:58544321-58544340 | Msa0364990:three_prime_UTR | 15.0% |
| !! | TGTTGAAATTTGATGAATTT+AGG | + | chr3_1:58538733-58538752 | Msa0364990:intron | 20.0% |
| !! | GTTGAAATTTGATGAATTTA+GGG | + | chr3_1:58538734-58538753 | Msa0364990:intron | 20.0% |
| !!! | TATTTTTGTTTTTGCTTTTG+TGG | + | chr3_1:58538855-58538874 | Msa0364990:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | + | chr3_1:58539023-58539042 | Msa0364990:intron | 20.0% |
| !!! | TGCTAAAAAATATTGACTTT+TGG | + | chr3_1:58539289-58539308 | Msa0364990:intron | 20.0% |
| !!! | TTTAGTACTTGATTTTTATC+TGG | + | chr3_1:58539335-58539354 | Msa0364990:intron | 20.0% |
| !!! | TATTTAGAATATAGTCTTTC+TGG | + | chr3_1:58539506-58539525 | Msa0364990:intron | 20.0% |
| !! | GTAAAAAAAATCTTTGCATT+GGG | - | chr3_1:58539602-58539621 | None:intergenic | 20.0% |
| !! | TGTAAAAAAAATCTTTGCAT+TGG | - | chr3_1:58539603-58539622 | None:intergenic | 20.0% |
| !! | TGTTGAAGTTGTTTATATAT+AGG | + | chr3_1:58539792-58539811 | Msa0364990:intron | 20.0% |
| !!! | TTGTAGCTTAAATTTTGAAT+TGG | + | chr3_1:58540018-58540037 | Msa0364990:intron | 20.0% |
| !!! | TGTAGCTTAAATTTTGAATT+GGG | + | chr3_1:58540019-58540038 | Msa0364990:intron | 20.0% |
| !! | AGATTTGATGAAGATAAAAA+TGG | + | chr3_1:58540070-58540089 | Msa0364990:intron | 20.0% |
| !! | GATTTGATGAAGATAAAAAT+GGG | + | chr3_1:58540071-58540090 | Msa0364990:intron | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | + | chr3_1:58540642-58540661 | Msa0364990:intron | 20.0% |
| !! | GTACATAAATTTGAATTCAT+TGG | + | chr3_1:58540985-58541004 | Msa0364990:intron | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | - | chr3_1:58541327-58541346 | None:intergenic | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | - | chr3_1:58541412-58541431 | None:intergenic | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | - | chr3_1:58541413-58541432 | None:intergenic | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | - | chr3_1:58541505-58541524 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | - | chr3_1:58541514-58541533 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | + | chr3_1:58541515-58541534 | Msa0364990:intron | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | + | chr3_1:58542071-58542090 | Msa0364990:intron | 20.0% |
| !! | CATATATATTATCTTGCATA+TGG | + | chr3_1:58542094-58542113 | Msa0364990:intron | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | + | chr3_1:58542175-58542194 | Msa0364990:intron | 20.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | + | chr3_1:58542431-58542450 | Msa0364990:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | - | chr3_1:58542488-58542507 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | + | chr3_1:58542569-58542588 | Msa0364990:intron | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | + | chr3_1:58543238-58543257 | Msa0364990:intron | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | - | chr3_1:58543317-58543336 | None:intergenic | 20.0% |
| !! | TGTTATGTAATGTTTAATGT+TGG | + | chr3_1:58543968-58543987 | Msa0364990:intron | 20.0% |
| !! | ATGTTTATAGATTAATTAGG+GGG | + | chr3_1:58544322-58544341 | Msa0364990:three_prime_UTR | 20.0% |
| !! | AATTTGATGAATTTAGGGTT+AGG | + | chr3_1:58538739-58538758 | Msa0364990:intron | 25.0% |
| !! | CTTGATGACTTAAAAATTGA+TGG | + | chr3_1:58539064-58539083 | Msa0364990:intron | 25.0% |
| !! | ATTTCATGTTTAACTTTGAG+AGG | + | chr3_1:58539163-58539182 | Msa0364990:intron | 25.0% |
| !!! | GAGAGGATTTTGATATAATT+TGG | + | chr3_1:58539180-58539199 | Msa0364990:intron | 25.0% |
| ! | TTTATGTATCTTTCCATGAT+TGG | - | chr3_1:58539758-58539777 | None:intergenic | 25.0% |
| !! | CTTTATCACTCTTTAAGAAA+AGG | + | chr3_1:58539883-58539902 | Msa0364990:intron | 25.0% |
| !! | ACAAATGAAAGAGTACAATA+TGG | - | chr3_1:58539976-58539995 | None:intergenic | 25.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | + | chr3_1:58540128-58540147 | Msa0364990:intron | 25.0% |
| ! | TATCTGTGATTGTAAATTTG+TGG | + | chr3_1:58540278-58540297 | Msa0364990:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | - | chr3_1:58540522-58540541 | None:intergenic | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+GGG | - | chr3_1:58540611-58540630 | None:intergenic | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | + | chr3_1:58540827-58540846 | Msa0364990:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | + | chr3_1:58540940-58540959 | Msa0364990:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr3_1:58541011-58541030 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | + | chr3_1:58541520-58541539 | Msa0364990:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | + | chr3_1:58541583-58541602 | Msa0364990:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | + | chr3_1:58541697-58541716 | Msa0364990:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | - | chr3_1:58541740-58541759 | None:intergenic | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | - | chr3_1:58541741-58541760 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | + | chr3_1:58541752-58541771 | Msa0364990:intron | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | + | chr3_1:58541957-58541976 | Msa0364990:intron | 25.0% |
| ! | AGAACACATATAATTGTGTT+TGG | + | chr3_1:58542022-58542041 | Msa0364990:intron | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | + | chr3_1:58542232-58542251 | Msa0364990:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | - | chr3_1:58542239-58542258 | None:intergenic | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | - | chr3_1:58542365-58542384 | None:intergenic | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | + | chr3_1:58542373-58542392 | Msa0364990:intron | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+TGG | - | chr3_1:58542423-58542442 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | - | chr3_1:58542484-58542503 | None:intergenic | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | - | chr3_1:58542485-58542504 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | + | chr3_1:58542492-58542511 | Msa0364990:intron | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | + | chr3_1:58542607-58542626 | Msa0364990:intron | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | - | chr3_1:58542687-58542706 | None:intergenic | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | + | chr3_1:58542972-58542991 | Msa0364990:intron | 25.0% |
| !!! | AAGCATTTATTTTCATCTGA+TGG | + | chr3_1:58543069-58543088 | Msa0364990:CDS | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | - | chr3_1:58543213-58543232 | None:intergenic | 25.0% |
| ! | GATAGTAATAGAATATGCAA+AGG | - | chr3_1:58543350-58543369 | None:intergenic | 25.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | - | chr3_1:58543838-58543857 | None:intergenic | 25.0% |
| ! | TATATGAAAATTGGAAATGC+AGG | + | chr3_1:58543997-58544016 | Msa0364990:intron | 25.0% |
| ! | ATATGAAAATTGGAAATGCA+GGG | + | chr3_1:58543998-58544017 | Msa0364990:intron | 25.0% |
| TCAAATTTCAACATGCATGA+GGG | - | chr3_1:58538726-58538745 | None:intergenic | 30.0% | |
| ATCAAATTTCAACATGCATG+AGG | - | chr3_1:58538727-58538746 | None:intergenic | 30.0% | |
| !! | TTTAGGGTTAGGTTTTCATT+TGG | + | chr3_1:58538750-58538769 | Msa0364990:intron | 30.0% |
| ! | TTAGGGTTAGGTTTTCATTT+GGG | + | chr3_1:58538751-58538770 | Msa0364990:intron | 30.0% |
| !!! | TTGTTTTTGCTTTTGTGGTT+TGG | + | chr3_1:58538860-58538879 | Msa0364990:intron | 30.0% |
| !!! | TTTTGAGATGAAATCACACT+TGG | + | chr3_1:58538980-58538999 | Msa0364990:intron | 30.0% |
| CTTGGTATAAATTGCACATA+AGG | + | chr3_1:58538998-58539017 | Msa0364990:intron | 30.0% | |
| CAGTGATATATGAATCTGTT+TGG | + | chr3_1:58539101-58539120 | Msa0364990:intron | 30.0% | |
| ! | TTGGTTTGATACATTTAGCT+TGG | + | chr3_1:58539199-58539218 | Msa0364990:intron | 30.0% |
| !!! | ATTTAGCTTGGTGTTTTTGA+TGG | + | chr3_1:58539211-58539230 | Msa0364990:intron | 30.0% |
| ! | CACAAGATTCTAGAGAAAAT+AGG | + | chr3_1:58539247-58539266 | Msa0364990:intron | 30.0% |
| ATGTATGATAGCAGTAATGT+TGG | + | chr3_1:58539436-58539455 | Msa0364990:intron | 30.0% | |
| TAATCTAAACCTGTTTCAGA+TGG | - | chr3_1:58539577-58539596 | None:intergenic | 30.0% | |
| !!! | TTTTACAGAAAAGAGCATTC+TGG | + | chr3_1:58539616-58539635 | Msa0364990:intron | 30.0% |
| ! | AACTGAGCATTTAAAATCTC+TGG | - | chr3_1:58540258-58540277 | None:intergenic | 30.0% |
| GTGATTGTAAATTTGTGGTA+AGG | + | chr3_1:58540283-58540302 | Msa0364990:intron | 30.0% | |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | + | chr3_1:58540334-58540353 | Msa0364990:intron | 30.0% |
| ! | TTTTTGCCCAATCTTTCTAA+TGG | + | chr3_1:58540602-58540621 | Msa0364990:intron | 30.0% |
| CAATTCTCCATTAGAAAGAT+TGG | - | chr3_1:58540612-58540631 | None:intergenic | 30.0% | |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | - | chr3_1:58540726-58540745 | None:intergenic | 30.0% |
| GGAAATAATTCTCAATGCAA+TGG | + | chr3_1:58540767-58540786 | Msa0364990:intron | 30.0% | |
| AATTCTCAATGCAATGGTTA+TGG | + | chr3_1:58540773-58540792 | Msa0364990:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | + | chr3_1:58541213-58541232 | Msa0364990:intron | 30.0% | |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | + | chr3_1:58541547-58541566 | Msa0364990:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | - | chr3_1:58541623-58541642 | None:intergenic | 30.0% |
| AGTGACTATGACAATGTAAT+TGG | + | chr3_1:58541797-58541816 | Msa0364990:CDS | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | - | chr3_1:58541830-58541849 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+TGG | + | chr3_1:58541876-58541895 | Msa0364990:intron | 30.0% | |
| ! | CAAATGGTGTAAAAGCATAT+TGG | - | chr3_1:58541926-58541945 | None:intergenic | 30.0% |
| ! | GGAATTTTGAACTTCATTGA+TGG | + | chr3_1:58542043-58542062 | Msa0364990:intron | 30.0% |
| !!! | ACAATTTTTTTCCTTACCCA+TGG | + | chr3_1:58542285-58542304 | Msa0364990:intron | 30.0% |
| AATTTCTGTCTCCTTTACTT+TGG | + | chr3_1:58542828-58542847 | Msa0364990:intron | 30.0% | |
| CATGTCATACTAATATGTGT+TGG | + | chr3_1:58542929-58542948 | Msa0364990:intron | 30.0% | |
| ! | GATTTGGTTTCTAAACCATA+AGG | - | chr3_1:58543197-58543216 | None:intergenic | 30.0% |
| TCATTTAAACTTACAGACAG+TGG | - | chr3_1:58543384-58543403 | None:intergenic | 30.0% | |
| GAAGAGTTATAGAGAGAATA+TGG | + | chr3_1:58543579-58543598 | Msa0364990:CDS | 30.0% | |
| ACATTAAATTCTCCAATACC+AGG | - | chr3_1:58543709-58543728 | None:intergenic | 30.0% | |
| TGAACATATATGTATACACG+TGG | - | chr3_1:58543772-58543791 | None:intergenic | 30.0% | |
| CGTGTATACATATATGTTCA+TGG | + | chr3_1:58543772-58543791 | Msa0364990:intron | 30.0% | |
| TATGAAAATTGGAAATGCAG+GGG | + | chr3_1:58543999-58544018 | Msa0364990:intron | 30.0% | |
| !! | CTCTGAGGAAATTTTGTATT+TGG | - | chr3_1:58544118-58544137 | None:intergenic | 30.0% |
| TGAAGAAACTGATGAAAAAG+AGG | + | chr3_1:58544223-58544242 | Msa0364990:three_prime_UTR | 30.0% | |
| GAAGAAACTGATGAAAAAGA+GGG | + | chr3_1:58544224-58544243 | Msa0364990:three_prime_UTR | 30.0% | |
| TTGTCAAATATGAACCAGTA+AGG | - | chr3_1:58544364-58544383 | None:intergenic | 30.0% | |
| ! | GAAGGCAAGCTTCAATTTTA+AGG | + | chr3_1:58538681-58538700 | Msa0364990:CDS | 35.0% |
| ! | TAGGGTTAGGTTTTCATTTG+GGG | + | chr3_1:58538752-58538771 | Msa0364990:intron | 35.0% |
| ! | CATTCAATTTGAGACATGCA+TGG | - | chr3_1:58538814-58538833 | None:intergenic | 35.0% |
| !!! | TTTTGTGGTTTGGTGATTCT+GGG | + | chr3_1:58538870-58538889 | Msa0364990:intron | 35.0% |
| !!! | TTGGTGATTCTGGGTTTTTT+TGG | + | chr3_1:58538879-58538898 | Msa0364990:intron | 35.0% |
| !! | TGGTCTCATCATTTTTCTTG+AGG | + | chr3_1:58539121-58539140 | Msa0364990:intron | 35.0% |
| !! | GTGTTTTTGATGGTTACAGT+TGG | + | chr3_1:58539221-58539240 | Msa0364990:intron | 35.0% |
| !! | TCTGGTCTCATCATTTTTCT+TGG | + | chr3_1:58539524-58539543 | Msa0364990:intron | 35.0% |
| TAAAAATAAGGAAGACAGGG+AGG | - | chr3_1:58539696-58539715 | None:intergenic | 35.0% | |
| GCGTAAAAATAAGGAAGACA+GGG | - | chr3_1:58539699-58539718 | None:intergenic | 35.0% | |
| ! | TGAGCTTTGGCGTAAAAATA+AGG | - | chr3_1:58539708-58539727 | None:intergenic | 35.0% |
| AACTTCATGAGTACCAATCA+TGG | + | chr3_1:58539742-58539761 | Msa0364990:intron | 35.0% | |
| TGAATTGGGTGTTCTTATTG+AGG | + | chr3_1:58540033-58540052 | Msa0364990:intron | 35.0% | |
| AGATAGTGATCCTATGATAG+AGG | + | chr3_1:58540189-58540208 | Msa0364990:intron | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | + | chr3_1:58540217-58540236 | Msa0364990:intron | 35.0% | |
| GGATTTCTGACTATGCTATT+GGG | + | chr3_1:58540218-58540237 | Msa0364990:intron | 35.0% | |
| ! | GACTTCAGTTACTTTCATCT+TGG | + | chr3_1:58540363-58540382 | Msa0364990:intron | 35.0% |
| AGCTGATAATCTGTGTTTCA+AGG | + | chr3_1:58540408-58540427 | Msa0364990:intron | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | + | chr3_1:58540504-58540523 | Msa0364990:intron | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | + | chr3_1:58540950-58540969 | Msa0364990:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | - | chr3_1:58541352-58541371 | None:intergenic | 35.0% |
| TTGTGTTTGTTCATGAAGGT+TGG | + | chr3_1:58541587-58541606 | Msa0364990:intron | 35.0% | |
| AGACTTACAAATCCTTAGAC+AGG | - | chr3_1:58541903-58541922 | None:intergenic | 35.0% | |
| ! | ACTTCATTGATGGTTGAAGT+AGG | + | chr3_1:58542053-58542072 | Msa0364990:intron | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | + | chr3_1:58542376-58542395 | Msa0364990:intron | 35.0% |
| CATATAGTTGAAGAACTGGT+AGG | - | chr3_1:58542419-58542438 | None:intergenic | 35.0% | |
| !! | CACTTTTAGGTCATTGCTTT+AGG | + | chr3_1:58542582-58542601 | Msa0364990:intron | 35.0% |
| TGCAAATCAGGACAAACTAA+TGG | + | chr3_1:58542619-58542638 | Msa0364990:intron | 35.0% | |
| ! | GCATAAGCAGCTAATTCTTT+TGG | + | chr3_1:58542731-58542750 | Msa0364990:intron | 35.0% |
| AGAGTAATCAGCCAAAGTAA+AGG | - | chr3_1:58542842-58542861 | None:intergenic | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | + | chr3_1:58542863-58542882 | Msa0364990:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | + | chr3_1:58542954-58542973 | Msa0364990:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | + | chr3_1:58542988-58543007 | Msa0364990:intron | 35.0% |
| GAGTGAAATCCACATAACAA+AGG | - | chr3_1:58543000-58543019 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | + | chr3_1:58543002-58543021 | Msa0364990:CDS | 35.0% | |
| ! | TGATTTTCGCAACTTCCTTA+TGG | + | chr3_1:58543179-58543198 | Msa0364990:intron | 35.0% |
| TTCTCTATAGGTCTGCTTTA+CGG | + | chr3_1:58543250-58543269 | Msa0364990:intron | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | - | chr3_1:58543295-58543314 | None:intergenic | 35.0% | |
| TTTCCCTTAGTTCCCTTAAT+TGG | + | chr3_1:58543527-58543546 | Msa0364990:intron | 35.0% | |
| ACACCAATTAAGGGAACTAA+GGG | - | chr3_1:58543533-58543552 | None:intergenic | 35.0% | |
| AACACCAATTAAGGGAACTA+AGG | - | chr3_1:58543534-58543553 | None:intergenic | 35.0% | |
| CTGCATCAAACACCAATTAA+GGG | - | chr3_1:58543542-58543561 | None:intergenic | 35.0% | |
| TCTGCATCAAACACCAATTA+AGG | - | chr3_1:58543543-58543562 | None:intergenic | 35.0% | |
| !!! | CTTTCTTTTTCAGAATGCCT+AGG | + | chr3_1:58543673-58543692 | Msa0364990:CDS | 35.0% |
| TGTATCCTGCATATTGTTTC+AGG | + | chr3_1:58543800-58543819 | Msa0364990:intron | 35.0% | |
| GTATCCTGCATATTGTTTCA+GGG | + | chr3_1:58543801-58543820 | Msa0364990:intron | 35.0% | |
| GAAATTGTTCCATCATACCT+CGG | - | chr3_1:58543919-58543938 | None:intergenic | 35.0% | |
| AGAAGGGAAATTGGAGAAGA+AGG | + | chr3_1:58538663-58538682 | Msa0364990:CDS | 40.0% | |
| ATGCATGAGGGAAAGGAAAA+GGG | - | chr3_1:58538714-58538733 | None:intergenic | 40.0% | |
| TTTCAACATGCATGAGGGAA+AGG | - | chr3_1:58538721-58538740 | None:intergenic | 40.0% | |
| ! | AGGGTTAGGTTTTCATTTGG+GGG | + | chr3_1:58538753-58538772 | Msa0364990:intron | 40.0% |
| ! | AGGTTTTCATTTGGGGGAAA+AGG | + | chr3_1:58538759-58538778 | Msa0364990:intron | 40.0% |
| ! | GGTTTTCATTTGGGGGAAAA+GGG | + | chr3_1:58538760-58538779 | Msa0364990:intron | 40.0% |
| ! | TTGGGGGAAAAGGGAATTTT+AGG | + | chr3_1:58538769-58538788 | Msa0364990:intron | 40.0% |
| ! | TGGGGGAAAAGGGAATTTTA+GGG | + | chr3_1:58538770-58538789 | Msa0364990:intron | 40.0% |
| !!! | CTTTTGTGGTTTGGTGATTC+TGG | + | chr3_1:58538869-58538888 | Msa0364990:intron | 40.0% |
| TTTCAGATGGATCGTTCTAG+AGG | - | chr3_1:58539564-58539583 | None:intergenic | 40.0% | |
| ! | TAGAACGATCCATCTGAAAC+AGG | + | chr3_1:58539565-58539584 | Msa0364990:intron | 40.0% |
| GGCGTAAAAATAAGGAAGAC+AGG | - | chr3_1:58539700-58539719 | None:intergenic | 40.0% | |
| !! | TATGTGCTGCTTATGAGCTT+TGG | - | chr3_1:58539721-58539740 | None:intergenic | 40.0% |
| ATGGCAGACAGATGCATATA+AGG | - | chr3_1:58539957-58539976 | None:intergenic | 40.0% | |
| TAGTGATCCTATGATAGAGG+TGG | + | chr3_1:58540192-58540211 | Msa0364990:intron | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | + | chr3_1:58540197-58540216 | Msa0364990:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | - | chr3_1:58540202-58540221 | None:intergenic | 40.0% | |
| AGAATGACCTCACGAACAAT+TGG | - | chr3_1:58540309-58540328 | None:intergenic | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | + | chr3_1:58540317-58540336 | Msa0364990:intron | 40.0% | |
| ! | TCAGTTACTTTCATCTTGGC+AGG | + | chr3_1:58540367-58540386 | Msa0364990:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | + | chr3_1:58540368-58540387 | Msa0364990:intron | 40.0% |
| TTGCTACACTCACATACCTT+TGG | + | chr3_1:58540459-58540478 | Msa0364990:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | + | chr3_1:58540472-58540491 | Msa0364990:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | - | chr3_1:58540478-58540497 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | - | chr3_1:58540715-58540734 | None:intergenic | 40.0% |
| TGGAACTGATATTGGGGAAA+AGG | - | chr3_1:58540734-58540753 | None:intergenic | 40.0% | |
| CTGTGTTGGAACTGATATTG+GGG | - | chr3_1:58540740-58540759 | None:intergenic | 40.0% | |
| GCTGTGTTGGAACTGATATT+GGG | - | chr3_1:58540741-58540760 | None:intergenic | 40.0% | |
| TGCTGTGTTGGAACTGATAT+TGG | - | chr3_1:58540742-58540761 | None:intergenic | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | - | chr3_1:58540754-58540773 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | + | chr3_1:58540903-58540922 | Msa0364990:intron | 40.0% |
| TGAACAAAAGGATGGATCAG+TGG | + | chr3_1:58541046-58541065 | Msa0364990:CDS | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | - | chr3_1:58541162-58541181 | None:intergenic | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | + | chr3_1:58541183-58541202 | Msa0364990:intron | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | - | chr3_1:58541391-58541410 | None:intergenic | 40.0% | |
| GTGAGTCTTCACATACACTA+AGG | - | chr3_1:58542267-58542286 | None:intergenic | 40.0% | |
| GTTATCACCAATCTGACCAT+GGG | - | chr3_1:58542304-58542323 | None:intergenic | 40.0% | |
| AGTTATCACCAATCTGACCA+TGG | - | chr3_1:58542305-58542324 | None:intergenic | 40.0% | |
| ! | CTAGATGGCATTCACCTTTT+AGG | + | chr3_1:58542507-58542526 | Msa0364990:intron | 40.0% |
| ! | AACCATGCTGACTACCTAAA+AGG | - | chr3_1:58542524-58542543 | None:intergenic | 40.0% |
| GATTACTCTGCTACAAGTGA+TGG | + | chr3_1:58542853-58542872 | Msa0364990:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | + | chr3_1:58542862-58542881 | Msa0364990:intron | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | + | chr3_1:58542948-58542967 | Msa0364990:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | - | chr3_1:58543287-58543306 | None:intergenic | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | + | chr3_1:58543628-58543647 | Msa0364990:CDS | 40.0% | |
| !! | TTTTTCAGAATGCCTAGGCT+GGG | + | chr3_1:58543678-58543697 | Msa0364990:CDS | 40.0% |
| GCTTTACTCATGATGCTGAA+AGG | + | chr3_1:58543853-58543872 | Msa0364990:CDS | 40.0% | |
| CGCTTATGGTGACATCATAA+GGG | - | chr3_1:58544049-58544068 | None:intergenic | 40.0% | |
| CCTTATGATGTCACCATAAG+CGG | + | chr3_1:58544047-58544066 | Msa0364990:CDS | 40.0% | |
| ! | TCTCAATCCTCGAGCTTTTA+AGG | - | chr3_1:58544143-58544162 | None:intergenic | 40.0% |
| CTTCAAATAGTCAGCCATTC+TGG | - | chr3_1:58544174-58544193 | None:intergenic | 40.0% | |
| ! | AATGGCTGACTATTTGAAGC+AGG | + | chr3_1:58544175-58544194 | Msa0364990:three_prime_UTR | 40.0% |
| ! | TATTTGAAGCAGGATGGCAA+AGG | + | chr3_1:58544185-58544204 | Msa0364990:three_prime_UTR | 40.0% |
| AAGCTTAATAGCAGCCTTAC+TGG | + | chr3_1:58544347-58544366 | Msa0364990:three_prime_UTR | 40.0% | |
| CATGCATGAGGGAAAGGAAA+AGG | - | chr3_1:58538715-58538734 | None:intergenic | 45.0% | |
| GAAGACAGGGAGGAATATCA+AGG | - | chr3_1:58539686-58539705 | None:intergenic | 45.0% | |
| GTTCGTGAGGTCATTCTCAA+AGG | + | chr3_1:58540312-58540331 | Msa0364990:intron | 45.0% | |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | + | chr3_1:58540385-58540404 | Msa0364990:intron | 45.0% |
| AAGGCAAGCAACTGGTTACA+TGG | - | chr3_1:58540707-58540726 | None:intergenic | 45.0% | |
| TCAGTTCCAACACAGCAATC+AGG | + | chr3_1:58540745-58540764 | Msa0364990:intron | 45.0% | |
| CAGTTCCAACACAGCAATCA+GGG | + | chr3_1:58540746-58540765 | Msa0364990:intron | 45.0% | |
| CTCTTGCAATCGCTTCTAGA+TGG | - | chr3_1:58540799-58540818 | None:intergenic | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | + | chr3_1:58541038-58541057 | Msa0364990:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr3_1:58541049-58541068 | Msa0364990:CDS | 45.0% | |
| !! | ACACAGGTTGGTGAACTTGA+TGG | + | chr3_1:58541080-58541099 | Msa0364990:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | + | chr3_1:58541084-58541103 | Msa0364990:CDS | 45.0% |
| AAGGCACGTTCGAAGAAACA+AGG | + | chr3_1:58541107-58541126 | Msa0364990:intron | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | + | chr3_1:58541108-58541127 | Msa0364990:intron | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | + | chr3_1:58541118-58541137 | Msa0364990:intron | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | + | chr3_1:58541135-58541154 | Msa0364990:intron | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr3_1:58541145-58541164 | Msa0364990:intron | 45.0% |
| CTTGTGCACACAGAACCAAA+AGG | - | chr3_1:58541163-58541182 | None:intergenic | 45.0% | |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr3_1:58541233-58541252 | Msa0364990:intron | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | + | chr3_1:58541253-58541272 | Msa0364990:intron | 45.0% | |
| ATCTTGCATGGTCCTGTCTA+AGG | + | chr3_1:58541888-58541907 | Msa0364990:intron | 45.0% | |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | + | chr3_1:58541974-58541993 | Msa0364990:intron | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | + | chr3_1:58541977-58541996 | Msa0364990:intron | 45.0% |
| TTCCTTACCCATGGTCAGAT+TGG | + | chr3_1:58542294-58542313 | Msa0364990:intron | 45.0% | |
| !! | CACCTTTTAGGTAGTCAGCA+TGG | + | chr3_1:58542519-58542538 | Msa0364990:intron | 45.0% |
| AAACAGCATCTCGTCTTTCG+CGG | + | chr3_1:58543028-58543047 | Msa0364990:CDS | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | + | chr3_1:58543045-58543064 | Msa0364990:CDS | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | + | chr3_1:58543046-58543065 | Msa0364990:CDS | 45.0% | |
| TGAGCTGCTGATAGACATTG+AGG | + | chr3_1:58543618-58543637 | Msa0364990:CDS | 45.0% | |
| CTGCTGATAGACATTGAGGT+AGG | + | chr3_1:58543622-58543641 | Msa0364990:CDS | 45.0% | |
| !!! | CTTTTTCAGAATGCCTAGGC+TGG | + | chr3_1:58543677-58543696 | Msa0364990:CDS | 45.0% |
| AGCACCCTGAAACAATATGC+AGG | - | chr3_1:58543808-58543827 | None:intergenic | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | + | chr3_1:58543885-58543904 | Msa0364990:CDS | 45.0% |
| AAATTGGAAATGCAGGGGAC+AGG | + | chr3_1:58544004-58544023 | Msa0364990:intron | 45.0% | |
| TATGGTGACATCATAAGGGC+TGG | - | chr3_1:58544045-58544064 | None:intergenic | 45.0% | |
| CCGCTTATGGTGACATCATA+AGG | - | chr3_1:58544050-58544069 | None:intergenic | 45.0% | |
| AATCCTTGACTCACCGCTTA+TGG | - | chr3_1:58544063-58544082 | None:intergenic | 45.0% | |
| GCCAGATATCATGCATGAGA+GGG | + | chr3_1:58544089-58544108 | Msa0364990:exon | 45.0% | |
| TCCCTCTCATGCATGATATC+TGG | - | chr3_1:58544093-58544112 | None:intergenic | 45.0% | |
| !! | CGAGCTTTTAAGGATCTCTG+AGG | - | chr3_1:58544133-58544152 | None:intergenic | 45.0% |
| CAGAGATCCTTAAAAGCTCG+AGG | + | chr3_1:58544133-58544152 | Msa0364990:three_prime_UTR | 45.0% | |
| TTGAGATTCCAGAGCCAGAA+TGG | + | chr3_1:58544157-58544176 | Msa0364990:three_prime_UTR | 45.0% | |
| ! | GCTGACTATTTGAAGCAGGA+TGG | + | chr3_1:58544179-58544198 | Msa0364990:three_prime_UTR | 45.0% |
| !! | TAAAAAAAAATATTGAAATA+TGG | - | chr3_1:58541646-58541665 | None:intergenic | 5.0% |
| !!! | TCAATATTTTTTTTTATTTA+TGG | + | chr3_1:58541650-58541669 | Msa0364990:intron | 5.0% |
| GGTAAGGCCAATTGTTCGTG+AGG | + | chr3_1:58540299-58540318 | Msa0364990:intron | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | + | chr3_1:58540959-58540978 | Msa0364990:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | + | chr3_1:58541034-58541053 | Msa0364990:CDS | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr3_1:58541064-58541083 | Msa0364990:CDS | 50.0% |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr3_1:58541068-58541087 | Msa0364990:CDS | 50.0% | |
| !! | CAGGTTGGTGAACTTGATGG+AGG | + | chr3_1:58541083-58541102 | Msa0364990:CDS | 50.0% |
| TGGTGAACTTGATGGAGGGA+AGG | + | chr3_1:58541088-58541107 | Msa0364990:CDS | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | + | chr3_1:58541111-58541130 | Msa0364990:intron | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | + | chr3_1:58541117-58541136 | Msa0364990:intron | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr3_1:58541251-58541270 | None:intergenic | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | - | chr3_1:58541989-58542008 | None:intergenic | 50.0% | |
| TGAAGGTGGTCTCAAGGACA+AGG | + | chr3_1:58541991-58542010 | Msa0364990:intron | 50.0% | |
| CACCAATCTGACCATGGGTA+AGG | - | chr3_1:58542299-58542318 | None:intergenic | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | - | chr3_1:58542719-58542738 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | + | chr3_1:58543036-58543055 | Msa0364990:CDS | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | + | chr3_1:58543104-58543123 | Msa0364990:CDS | 50.0% | |
| ACCATCTGGAGAAGAAGAGG+AGG | - | chr3_1:58543108-58543127 | None:intergenic | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | - | chr3_1:58543111-58543130 | None:intergenic | 50.0% | |
| !! | CTTTGGAGTCACGAACCATC+TGG | - | chr3_1:58543122-58543141 | None:intergenic | 50.0% |
| ATAGGCAACGCGGAGTTTGA+AGG | - | chr3_1:58543277-58543296 | None:intergenic | 50.0% | |
| TACCAGGAAATACCCAGCCT+AGG | - | chr3_1:58543693-58543712 | None:intergenic | 50.0% | |
| GGCTGGGTATTTCCTGGTAT+TGG | + | chr3_1:58543694-58543713 | Msa0364990:CDS | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | + | chr3_1:58543889-58543908 | Msa0364990:CDS | 50.0% | |
| TCACCATAAGCGGTGAGTCA+AGG | + | chr3_1:58544057-58544076 | Msa0364990:CDS | 50.0% | |
| ! | CGGTGAGTCAAGGATTAGTG+AGG | + | chr3_1:58544067-58544086 | Msa0364990:CDS | 50.0% |
| GGCCAGATATCATGCATGAG+AGG | + | chr3_1:58544088-58544107 | Msa0364990:exon | 50.0% | |
| !! | ATAGTCAGCCATTCTGGCTC+TGG | - | chr3_1:58544168-58544187 | None:intergenic | 50.0% |
| AGGGAGGAAGAGGGATGTTG+TGG | + | chr3_1:58541127-58541146 | Msa0364990:intron | 55.0% | |
| GAATGCGATTGAAGCGCGCA+TGG | + | chr3_1:58541289-58541308 | Msa0364990:CDS | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | + | chr3_1:58541985-58542004 | Msa0364990:intron | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | + | chr3_1:58542654-58542673 | Msa0364990:intron | 55.0% | |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | - | chr3_1:58542660-58542679 | None:intergenic | 55.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | + | chr3_1:58542659-58542678 | Msa0364990:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | - | chr3_1:58542664-58542683 | None:intergenic | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | - | chr3_1:58542714-58542733 | None:intergenic | 55.0% | |
| TGCCTAGGCTGGGTATTTCC+TGG | + | chr3_1:58543688-58543707 | Msa0364990:CDS | 55.0% | |
| ! | GCAGGTTGACCGAGGTATGA+TGG | + | chr3_1:58543907-58543926 | Msa0364990:intron | 55.0% |
| ! | ATAAGGGCTGGTGCACCTAC+TGG | - | chr3_1:58544033-58544052 | None:intergenic | 55.0% |
| GCGATTGAAGCGCGCATGGT+TGG | + | chr3_1:58541293-58541312 | Msa0364990:intron | 60.0% | |
| ACGCCGCACCTTGGTTGTAG+AGG | + | chr3_1:58542708-58542727 | Msa0364990:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | + | chr3_1:58542709-58542728 | Msa0364990:intron | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | + | chr3_1:58543899-58543918 | Msa0364990:intron | 60.0% |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | + | chr3_1:58541299-58541318 | Msa0364990:intron | 65.0% |
| ACGTCTGCAACGCCGCACCT+TGG | + | chr3_1:58542699-58542718 | Msa0364990:intron | 65.0% | |
| GCAGGGGACAGGCTTCCAGT+AGG | + | chr3_1:58544015-58544034 | Msa0364990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 58538655 | 58544412 | 58538655 | ID=Msa0364990;Name=Msa0364990 |
| chr3_1 | mRNA | 58538655 | 58544412 | 58538655 | ID=Msa0364990-mRNA-1;Parent=Msa0364990;Name=Msa0364990-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.25|0.22|0.88|0.5|0.66|9|306|246 |
| chr3_1 | exon | 58538655 | 58538702 | 58538655 | ID=Msa0364990-mRNA-1:exon:11100;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58540962 | 58540980 | 58540962 | ID=Msa0364990-mRNA-1:exon:11101;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58541027 | 58541113 | 58541027 | ID=Msa0364990-mRNA-1:exon:11102;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58541255 | 58541310 | 58541255 | ID=Msa0364990-mRNA-1:exon:11103;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58541782 | 58541838 | 58541782 | ID=Msa0364990-mRNA-1:exon:11104;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58542994 | 58543125 | 58542994 | ID=Msa0364990-mRNA-1:exon:11105;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58543562 | 58543726 | 58543562 | ID=Msa0364990-mRNA-1:exon:11106;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58543822 | 58543910 | 58543822 | ID=Msa0364990-mRNA-1:exon:11107;Parent=Msa0364990-mRNA-1 |
| chr3_1 | exon | 58544019 | 58544412 | 58544019 | ID=Msa0364990-mRNA-1:exon:11108;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58538655 | 58538702 | 58538655 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58540962 | 58540980 | 58540962 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58541027 | 58541113 | 58541027 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58541255 | 58541310 | 58541255 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58541782 | 58541838 | 58541782 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58542994 | 58543125 | 58542994 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58543562 | 58543726 | 58543562 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58543822 | 58543910 | 58543822 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | CDS | 58544019 | 58544106 | 58544019 | ID=Msa0364990-mRNA-1:cds;Parent=Msa0364990-mRNA-1 |
| chr3_1 | three_prime_UTR | 58544107 | 58544412 | 58544107 | ID=Msa0364990-mRNA-1:three_prime_utr;Parent=Msa0364990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
