Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704950 | KAG6595095.1 | 87.324 | 71 | 9 | 0 | 1 | 71 | 1 | 71 | 3.49e-36 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704950 | sp|Q9M2Q4|NT102_ARATH | 75.949 | 79 | 19 | 0 | 1 | 79 | 1 | 79 | 1.55e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704950 | A0A2Z6MN57 | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 5.13e-36 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081650 | Msa0704950 | 0.800346 | 1.505022e-48 | -8.615850e-47 |
| Msa0618950 | Msa0704950 | 0.801353 | 9.373931e-49 | -8.615850e-47 |
| Msa0704950 | Msa0705390 | 0.807243 | 5.559922e-50 | -8.615850e-47 |
| Msa0704950 | Msa0880040 | 0.811332 | 7.381569e-51 | -8.615850e-47 |
| Msa0704950 | Msa1098890 | 0.801344 | 9.413264e-49 | -8.615850e-47 |
| Msa0704950 | Msa1127540 | 0.809174 | 2.155904e-50 | -8.615850e-47 |
| Msa0704950 | Msa1254620 | 0.817880 | 2.621871e-52 | -8.615850e-47 |
| Msa0403500 | Msa0704950 | 0.823398 | 1.415045e-53 | -8.615850e-47 |
| Msa0363400 | Msa0704950 | 0.808589 | 2.875109e-50 | -8.615850e-47 |
| Msa0554290 | Msa0704950 | 0.805941 | 1.046835e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704950 | MtrunA17_Chr8g0383301 | 90.667 | 75 | 2 | 1 | 1 | 70 | 1 | 75 | 1.00e-39 | 140 |
| Msa0704950 | MtrunA17_Chr2g0291101 | 79.710 | 69 | 14 | 0 | 1 | 69 | 1 | 69 | 1.79e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704950 | AT3G57940.1 | 75.949 | 79 | 19 | 0 | 1 | 79 | 1 | 79 | 1.58e-34 | 125 |
| Msa0704950 | AT3G57940.2 | 75.949 | 79 | 19 | 0 | 1 | 79 | 1 | 79 | 1.74e-34 | 125 |
| Msa0704950 | AT1G10490.1 | 80.000 | 65 | 13 | 0 | 1 | 65 | 1 | 65 | 8.31e-32 | 118 |
| Msa0704950 | AT1G10490.2 | 80.000 | 65 | 13 | 0 | 1 | 65 | 1 | 65 | 8.31e-32 | 118 |
Find 43 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTGAAGTTAGGGTTTA+TGG | 0.119849 | 4_4:-77491832 | None:intergenic |
| CGATCCATGTTTGTCATTAT+CGG | 0.274182 | 4_4:+77492036 | Msa0704950:CDS |
| ATCAGAACTCTCATTGAAAA+TGG | 0.315497 | 4_4:+77491997 | Msa0704950:CDS |
| TATGAGGGTGATTGGGTTGA+TGG | 0.335707 | 4_4:+77494261 | Msa0704950:CDS |
| GATTAATATATGAGGGTGAT+TGG | 0.337126 | 4_4:+77494253 | Msa0704950:CDS |
| TGTCTACATTGGTAACATTA+AGG | 0.342248 | 4_4:+77494193 | Msa0704950:CDS |
| GCAAAGTTCACATGGTTAGA+TGG | 0.374317 | 4_4:+77494231 | Msa0704950:CDS |
| AACGGCAGAAGCTTGAAGTT+AGG | 0.382548 | 4_4:-77491840 | None:intergenic |
| ACGGCAGAAGCTTGAAGTTA+GGG | 0.426254 | 4_4:-77491839 | None:intergenic |
| TTGAAAATGGCGTCAAATCA+AGG | 0.436134 | 4_4:+77492010 | Msa0704950:CDS |
| GTTAGATGGATTAATATATG+AGG | 0.443717 | 4_4:+77494245 | Msa0704950:CDS |
| CGGTGACAAATCCCGTGATC+AGG | 0.453225 | 4_4:+77492056 | Msa0704950:CDS |
| CCTTCGTTCCAGACAAAATG+AGG | 0.456438 | 4_4:+77491956 | Msa0704950:intron |
| GCGATAATGAGAGACCTTGT+TGG | 0.458934 | 4_4:-77491869 | None:intergenic |
| AGGAAAAGCTTGAACTAAGC+AGG | 0.472967 | 4_4:+77492380 | Msa0704950:CDS |
| CCCTCATACTTGTCTCCTGA+TGG | 0.482924 | 4_4:-77494316 | None:intergenic |
| TGAAGTTAGGGTTTATGGAG+GGG | 0.504525 | 4_4:-77491827 | None:intergenic |
| AGACCTTGTTGGAGTGAAAA+CGG | 0.506604 | 4_4:-77491858 | None:intergenic |
| ATTGTAGGTTTAAAGAGATG+TGG | 0.509051 | 4_4:+77494169 | Msa0704950:intron |
| TGGGTTGATGGAGAGATGAC+AGG | 0.520799 | 4_4:+77494273 | Msa0704950:CDS |
| TTGTAGGTTTAAAGAGATGT+GGG | 0.522914 | 4_4:+77494170 | Msa0704950:intron |
| ATTAATATATGAGGGTGATT+GGG | 0.523711 | 4_4:+77494254 | Msa0704950:CDS |
| GACTGTTTGATACAGCCATC+AGG | 0.533297 | 4_4:+77494301 | Msa0704950:CDS |
| GCCATCAGGAGACAAGTATG+AGG | 0.539818 | 4_4:+77494315 | Msa0704950:CDS |
| GCAAGGCTCAAATCAAATCA+AGG | 0.550985 | 4_4:+77492335 | Msa0704950:CDS |
| TTGAAGTTAGGGTTTATGGA+GGG | 0.551143 | 4_4:-77491828 | None:intergenic |
| CTTGAAGTTAGGGTTTATGG+AGG | 0.554138 | 4_4:-77491829 | None:intergenic |
| TCTTCATTATATGCTTAGCA+AGG | 0.565411 | 4_4:+77492318 | Msa0704950:CDS |
| GAGGGGTTTACGTCACCGCT+AGG | 0.572075 | 4_4:-77491810 | None:intergenic |
| TTAGATGGATTAATATATGA+GGG | 0.579551 | 4_4:+77494246 | Msa0704950:CDS |
| TCCAGACAAAATGAGGAAGA+AGG | 0.581483 | 4_4:+77491963 | Msa0704950:intron |
| GATGGAGAGATGACAGGGAA+AGG | 0.581963 | 4_4:+77494279 | Msa0704950:CDS |
| TCCTCATGGCAAAGTTCACA+TGG | 0.582687 | 4_4:+77494223 | Msa0704950:CDS |
| ATTAAGGATAAACTTCCTCA+TGG | 0.586513 | 4_4:+77494209 | Msa0704950:CDS |
| ATAAAACGATACCTGATCAC+GGG | 0.592447 | 4_4:-77492067 | None:intergenic |
| AGAGATGTGGGTGTCTACAT+TGG | 0.596782 | 4_4:+77494182 | Msa0704950:CDS |
| TTGTAACACCATAAAACAGT+TGG | 0.597418 | 4_4:-77492358 | None:intergenic |
| TATAAAACGATACCTGATCA+CGG | 0.604633 | 4_4:-77492068 | None:intergenic |
| GGGTTGATGGAGAGATGACA+GGG | 0.608966 | 4_4:+77494274 | Msa0704950:CDS |
| AGACAAAATGAGGAAGAAGG+TGG | 0.627687 | 4_4:+77491966 | Msa0704950:intron |
| CCATCAGGAGACAAGTATGA+GGG | 0.645360 | 4_4:+77494316 | Msa0704950:CDS |
| GTCACCGATAATGACAAACA+TGG | 0.659550 | 4_4:-77492040 | None:intergenic |
| ACCATGTGAACTTTGCCATG+AGG | 0.694956 | 4_4:-77494224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATATATTAATTAAT+TGG | + | chr4_4:77492527-77492546 | Msa0704950:intron | 0.0% |
| !! | TTCCAAAAATATTAATTAAT+TGG | + | chr4_4:77492494-77492513 | Msa0704950:intron | 10.0% |
| !!! | AACCAATTAATTAATATTTT+TGG | - | chr4_4:77492499-77492518 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTCATAAAAGA+GGG | - | chr4_4:77493178-77493197 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTCATAAAAG+AGG | - | chr4_4:77493179-77493198 | None:intergenic | 10.0% |
| !!! | AAAATCACTTTTATTTTAAT+CGG | - | chr4_4:77493413-77493432 | None:intergenic | 10.0% |
| !! | AAAATATATTTATTATCCTA+TGG | + | chr4_4:77493500-77493519 | Msa0704950:intron | 10.0% |
| !!! | AAGTTTTTTTTTTTTTTTTG+AGG | + | chr4_4:77493637-77493656 | Msa0704950:intron | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTGA+GGG | + | chr4_4:77493638-77493657 | Msa0704950:intron | 10.0% |
| !! | AAATCAGTTATTATAAGAAA+TGG | - | chr4_4:77491897-77491916 | None:intergenic | 15.0% |
| !!! | GAAAAAAGTGATTTTTTTAT+GGG | - | chr4_4:77492659-77492678 | None:intergenic | 15.0% |
| !!! | TGAAAAAAGTGATTTTTTTA+TGG | - | chr4_4:77492660-77492679 | None:intergenic | 15.0% |
| !!! | AACTCATTTTTGTTAAAAAA+TGG | + | chr4_4:77492825-77492844 | Msa0704950:intron | 15.0% |
| !! | GAAAATAAGTATAAAAAATG+AGG | - | chr4_4:77493156-77493175 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTTTTGAG+GGG | + | chr4_4:77493639-77493658 | Msa0704950:intron | 15.0% |
| !!! | TTTTAAGTTCTAAAAAACAA+GGG | - | chr4_4:77494034-77494053 | None:intergenic | 15.0% |
| !!! | ATTTTAAGTTCTAAAAAACA+AGG | - | chr4_4:77494035-77494054 | None:intergenic | 15.0% |
| !! | ATTAACAATCTGCATAAATT+CGG | - | chr4_4:77492299-77492318 | None:intergenic | 20.0% |
| !!! | AATTGGTAATCTATTTACAT+AGG | + | chr4_4:77492544-77492563 | Msa0704950:intron | 20.0% |
| !! | TCTATTTACATAGGATTAAA+CGG | + | chr4_4:77492553-77492572 | Msa0704950:intron | 20.0% |
| !! | ATTCTATTTACATAGGATTA+AGG | + | chr4_4:77492591-77492610 | Msa0704950:intron | 20.0% |
| !! | TTCTATTTACATAGGATTAA+GGG | + | chr4_4:77492592-77492611 | Msa0704950:intron | 20.0% |
| !!! | GGGAAAAAATAGATTTTTAT+TGG | - | chr4_4:77492639-77492658 | None:intergenic | 20.0% |
| !!! | TCTATTATTTTTCAACAACA+AGG | + | chr4_4:77492780-77492799 | Msa0704950:intron | 20.0% |
| !!! | AATGGATTTTTATGAATAGT+AGG | + | chr4_4:77492843-77492862 | Msa0704950:intron | 20.0% |
| !! | TATTCTCCTAAAAAACAAAT+AGG | - | chr4_4:77493376-77493395 | None:intergenic | 20.0% |
| !! | ACATAATTCAGTGTAATTAT+AGG | + | chr4_4:77493874-77493893 | Msa0704950:intron | 20.0% |
| !! | GAAATCATAATCATAATACA+TGG | - | chr4_4:77494135-77494154 | None:intergenic | 20.0% |
| !!! | TTAGATGGATTAATATATGA+GGG | + | chr4_4:77494246-77494265 | Msa0704950:CDS | 20.0% |
| ! | ACTTTCGATTCTAACTTATA+CGG | + | chr4_4:77491925-77491944 | Msa0704950:intron | 25.0% |
| ! | ATAAGCACTTTAATGGTATA+AGG | - | chr4_4:77492125-77492144 | None:intergenic | 25.0% |
| ! | TACAGAAATAAGCACTTTAA+TGG | - | chr4_4:77492132-77492151 | None:intergenic | 25.0% |
| !!! | AGGTTTGTTGATATAATTGA+TGG | + | chr4_4:77492400-77492419 | Msa0704950:intron | 25.0% |
| !! | TTGTTGATATAATTGATGGT+TGG | + | chr4_4:77492404-77492423 | Msa0704950:intron | 25.0% |
| ! | TAAACAAAACAGACAAATCA+TGG | - | chr4_4:77492455-77492474 | None:intergenic | 25.0% |
| ! | AAAAGCGATTCTATTTACAT+AGG | + | chr4_4:77492584-77492603 | Msa0704950:intron | 25.0% |
| !!! | TCATTTTTGAGTGTTTGTTT+AGG | + | chr4_4:77492677-77492696 | Msa0704950:intron | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+GGG | - | chr4_4:77492743-77492762 | None:intergenic | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | - | chr4_4:77492744-77492763 | None:intergenic | 25.0% |
| !!! | ATACGACCTATTTGTTTTTT+AGG | + | chr4_4:77493367-77493386 | Msa0704950:intron | 25.0% |
| ! | AAGTTATATATGCTTTGTGT+TGG | + | chr4_4:77493671-77493690 | Msa0704950:intron | 25.0% |
| !! | AGCGACGTTATTATTATTTT+AGG | + | chr4_4:77493717-77493736 | Msa0704950:intron | 25.0% |
| ! | CGTATAATCCAAAAAGTTAT+AGG | + | chr4_4:77493923-77493942 | Msa0704950:intron | 25.0% |
| !! | CATTGTTTCTTGTAAATTGT+AGG | + | chr4_4:77494154-77494173 | Msa0704950:intron | 25.0% |
| !!! | GTTAGATGGATTAATATATG+AGG | + | chr4_4:77494245-77494264 | Msa0704950:CDS | 25.0% |
| ! | ATTAATATATGAGGGTGATT+GGG | + | chr4_4:77494254-77494273 | Msa0704950:CDS | 25.0% |
| ATCAGAACTCTCATTGAAAA+TGG | + | chr4_4:77491997-77492016 | Msa0704950:CDS | 30.0% | |
| TATAAAACGATACCTGATCA+CGG | - | chr4_4:77492071-77492090 | None:intergenic | 30.0% | |
| TAAGCACTTGTACAATTGTT+CGG | - | chr4_4:77492221-77492240 | None:intergenic | 30.0% | |
| CAATTTAAGTCAATTCAAGC+AGG | + | chr4_4:77492257-77492276 | Msa0704950:intron | 30.0% | |
| TCTTCATTATATGCTTAGCA+AGG | + | chr4_4:77492318-77492337 | Msa0704950:CDS | 30.0% | |
| TTGTAACACCATAAAACAGT+TGG | - | chr4_4:77492361-77492380 | None:intergenic | 30.0% | |
| !!! | AACTGTTTTATGGTGTTACA+AGG | + | chr4_4:77492360-77492379 | Msa0704950:CDS | 30.0% |
| ! | AATTGATGGTTGGAATGAAT+CGG | + | chr4_4:77492414-77492433 | Msa0704950:intron | 30.0% |
| ! | GGAAAAAATCTGAAACAAAC+AGG | - | chr4_4:77492618-77492637 | None:intergenic | 30.0% |
| CCCTAAAATGAAAAGCTATT+AGG | + | chr4_4:77492740-77492759 | Msa0704950:intron | 30.0% | |
| AAAAACAAATAGGTCGTATG+AGG | - | chr4_4:77493366-77493385 | None:intergenic | 30.0% | |
| AGAAGTTAAACAAAGACCAT+AGG | - | chr4_4:77493519-77493538 | None:intergenic | 30.0% | |
| TGCGATTAACAGAATAGAAA+AGG | + | chr4_4:77493543-77493562 | Msa0704950:intron | 30.0% | |
| AACAGAATAGAAAAGGAGAT+TGG | + | chr4_4:77493550-77493569 | Msa0704950:intron | 30.0% | |
| TTAATTATGCTCTTGTGTGT+TGG | + | chr4_4:77493756-77493775 | Msa0704950:intron | 30.0% | |
| TTCAGTGTAATTATAGGTGT+CGG | + | chr4_4:77493880-77493899 | Msa0704950:intron | 30.0% | |
| ATCCAAAAAGTTATAGGTGT+CGG | + | chr4_4:77493929-77493948 | Msa0704950:intron | 30.0% | |
| TTGAAATAGCTAGAGAATGA+TGG | - | chr4_4:77494058-77494077 | None:intergenic | 30.0% | |
| ATTGTAGGTTTAAAGAGATG+TGG | + | chr4_4:77494169-77494188 | Msa0704950:intron | 30.0% | |
| TTGTAGGTTTAAAGAGATGT+GGG | + | chr4_4:77494170-77494189 | Msa0704950:intron | 30.0% | |
| ! | TGTCTACATTGGTAACATTA+AGG | + | chr4_4:77494193-77494212 | Msa0704950:CDS | 30.0% |
| ATTAAGGATAAACTTCCTCA+TGG | + | chr4_4:77494209-77494228 | Msa0704950:CDS | 30.0% | |
| GATTAATATATGAGGGTGAT+TGG | + | chr4_4:77494253-77494272 | Msa0704950:CDS | 30.0% | |
| TTGAAGTTAGGGTTTATGGA+GGG | - | chr4_4:77491831-77491850 | None:intergenic | 35.0% | |
| AAGCTTGAAGTTAGGGTTTA+TGG | - | chr4_4:77491835-77491854 | None:intergenic | 35.0% | |
| TTGAAAATGGCGTCAAATCA+AGG | + | chr4_4:77492010-77492029 | Msa0704950:CDS | 35.0% | |
| CGATCCATGTTTGTCATTAT+CGG | + | chr4_4:77492036-77492055 | Msa0704950:CDS | 35.0% | |
| ATAAAACGATACCTGATCAC+GGG | - | chr4_4:77492070-77492089 | None:intergenic | 35.0% | |
| AAGCACTTGTACAATTGTTC+GGG | - | chr4_4:77492220-77492239 | None:intergenic | 35.0% | |
| CATAAATTCGGAACACTCTT+GGG | - | chr4_4:77492287-77492306 | None:intergenic | 35.0% | |
| ! | AATCAAGGCCAACTGTTTTA+TGG | + | chr4_4:77492350-77492369 | Msa0704950:CDS | 35.0% |
| !! | CTTTTCTACTATGCCGTTTA+GGG | - | chr4_4:77492569-77492588 | None:intergenic | 35.0% |
| TTTCCACTAGTCGTAGTAAA+CGG | + | chr4_4:77493006-77493025 | Msa0704950:intron | 35.0% | |
| ! | GTGATTTTTACTACGACTAG+CGG | - | chr4_4:77493064-77493083 | None:intergenic | 35.0% |
| ACAGAAACTACAGAGTAAAG+TGG | - | chr4_4:77493605-77493624 | None:intergenic | 35.0% | |
| TATGAAGCACGATACATACA+TGG | + | chr4_4:77493794-77493813 | Msa0704950:intron | 35.0% | |
| GCATGCATGTAGTAAATGAA+TGG | - | chr4_4:77494083-77494102 | None:intergenic | 35.0% | |
| TTACTACATGCATGCATGTA+TGG | + | chr4_4:77494088-77494107 | Msa0704950:intron | 35.0% | |
| TGAAGTTAGGGTTTATGGAG+GGG | - | chr4_4:77491830-77491849 | None:intergenic | 40.0% | |
| CTTGAAGTTAGGGTTTATGG+AGG | - | chr4_4:77491832-77491851 | None:intergenic | 40.0% | |
| AGACCTTGTTGGAGTGAAAA+CGG | - | chr4_4:77491861-77491880 | None:intergenic | 40.0% | |
| TCCAGACAAAATGAGGAAGA+AGG | + | chr4_4:77491963-77491982 | Msa0704950:intron | 40.0% | |
| ! | ACCTTCTTCCTCATTTTGTC+TGG | - | chr4_4:77491967-77491986 | None:intergenic | 40.0% |
| AGACAAAATGAGGAAGAAGG+TGG | + | chr4_4:77491966-77491985 | Msa0704950:intron | 40.0% | |
| GTCACCGATAATGACAAACA+TGG | - | chr4_4:77492043-77492062 | None:intergenic | 40.0% | |
| GCATAAATTCGGAACACTCT+TGG | - | chr4_4:77492288-77492307 | None:intergenic | 40.0% | |
| GCAAGGCTCAAATCAAATCA+AGG | + | chr4_4:77492335-77492354 | Msa0704950:CDS | 40.0% | |
| AGGAAAAGCTTGAACTAAGC+AGG | + | chr4_4:77492380-77492399 | Msa0704950:CDS | 40.0% | |
| TGAAACAAACGCACCCTAAA+CGG | + | chr4_4:77492953-77492972 | Msa0704950:intron | 40.0% | |
| !! | GCTTTTCTACTATGCCGTTT+AGG | - | chr4_4:77492570-77492589 | None:intergenic | 40.0% |
| GTAAAGTGGTTACACTGCTT+AGG | - | chr4_4:77493591-77493610 | None:intergenic | 40.0% | |
| ! | TCTTGTGTGTTGGTAAGTAG+AGG | + | chr4_4:77493766-77493785 | Msa0704950:intron | 40.0% |
| ATCAGTGTCTATTTCGTGTC+TGG | - | chr4_4:77493823-77493842 | None:intergenic | 40.0% | |
| !! | TATAGGTGTCGGTGTTATGT+CGG | + | chr4_4:77493891-77493910 | Msa0704950:intron | 40.0% |
| ! | CACCGACACCTATAACTTTT+TGG | - | chr4_4:77493934-77493953 | None:intergenic | 40.0% |
| ! | TATGAAGCACGGACACTTTT+TGG | - | chr4_4:77493981-77494000 | None:intergenic | 40.0% |
| !! | AAAAAGTGTCCGTGCTTCAT+AGG | + | chr4_4:77493980-77493999 | Msa0704950:intron | 40.0% |
| GCAAAGTTCACATGGTTAGA+TGG | + | chr4_4:77494231-77494250 | Msa0704950:CDS | 40.0% | |
| ACGGCAGAAGCTTGAAGTTA+GGG | - | chr4_4:77491842-77491861 | None:intergenic | 45.0% | |
| AACGGCAGAAGCTTGAAGTT+AGG | - | chr4_4:77491843-77491862 | None:intergenic | 45.0% | |
| GCGATAATGAGAGACCTTGT+TGG | - | chr4_4:77491872-77491891 | None:intergenic | 45.0% | |
| !! | CCTCATTTTGTCTGGAACGA+AGG | - | chr4_4:77491959-77491978 | None:intergenic | 45.0% |
| CCTTCGTTCCAGACAAAATG+AGG | + | chr4_4:77491956-77491975 | Msa0704950:intron | 45.0% | |
| !! | TATAGGTGTCGGTGTCATGT+CGG | + | chr4_4:77493940-77493959 | Msa0704950:intron | 45.0% |
| AGAGATGTGGGTGTCTACAT+TGG | + | chr4_4:77494182-77494201 | Msa0704950:CDS | 45.0% | |
| TCCTCATGGCAAAGTTCACA+TGG | + | chr4_4:77494223-77494242 | Msa0704950:CDS | 45.0% | |
| ACCATGTGAACTTTGCCATG+AGG | - | chr4_4:77494227-77494246 | None:intergenic | 45.0% | |
| !! | TATGAGGGTGATTGGGTTGA+TGG | + | chr4_4:77494261-77494280 | Msa0704950:CDS | 45.0% |
| GACTGTTTGATACAGCCATC+AGG | + | chr4_4:77494301-77494320 | Msa0704950:CDS | 45.0% | |
| !!! | AAAAAAAATATTTTTTGAAA+AGG | + | chr4_4:77493190-77493209 | Msa0704950:intron | 5.0% |
| !! | AAAAAATAATTTCTAAATTA+TGG | - | chr4_4:77493467-77493486 | None:intergenic | 5.0% |
| !!! | CTGCCGTTTTCACTCCAACA+AGG | + | chr4_4:77491855-77491874 | Msa0704950:five_prime_UTR | 50.0% |
| ACGCCGTTTACTACGACTAG+TGG | - | chr4_4:77493012-77493031 | None:intergenic | 50.0% | |
| !! | TGTCGGTGTTATGTCGGTGT+GGG | + | chr4_4:77493897-77493916 | Msa0704950:intron | 50.0% |
| AAGTGTCCGTGCTTCATAGG+AGG | + | chr4_4:77493983-77494002 | Msa0704950:intron | 50.0% | |
| !! | TGGGTTGATGGAGAGATGAC+AGG | + | chr4_4:77494273-77494292 | Msa0704950:CDS | 50.0% |
| !! | GGGTTGATGGAGAGATGACA+GGG | + | chr4_4:77494274-77494293 | Msa0704950:CDS | 50.0% |
| GATGGAGAGATGACAGGGAA+AGG | + | chr4_4:77494279-77494298 | Msa0704950:CDS | 50.0% | |
| CGGTGACAAATCCCGTGATC+AGG | + | chr4_4:77492056-77492075 | Msa0704950:CDS | 55.0% | |
| !! | GTGTCGGTGTTATGTCGGTG+TGG | + | chr4_4:77493896-77493915 | Msa0704950:intron | 55.0% |
| !! | TGTCGGTGTCATGTCGGTGT+CGG | + | chr4_4:77493946-77493965 | Msa0704950:intron | 55.0% |
| TCCGTGCTTCATAGGAGGCA+TGG | + | chr4_4:77493988-77494007 | Msa0704950:intron | 55.0% | |
| CCCATGCCTCCTATGAAGCA+CGG | - | chr4_4:77493992-77494011 | None:intergenic | 55.0% | |
| ! | CCGTGCTTCATAGGAGGCAT+GGG | + | chr4_4:77493989-77494008 | Msa0704950:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77491813 | 77494335 | 77491813 | ID=Msa0704950;Name=Msa0704950 |
| chr4_4 | mRNA | 77491813 | 77494335 | 77491813 | ID=Msa0704950-mRNA-1;Parent=Msa0704950;Name=Msa0704950-mRNA-1;_AED=0.33;_eAED=0.37;_QI=69|0.66|0.75|1|0.66|0.5|4|0|118 |
| chr4_4 | exon | 77491813 | 77491876 | 77491813 | ID=Msa0704950-mRNA-1:exon:24618;Parent=Msa0704950-mRNA-1 |
| chr4_4 | exon | 77491968 | 77492077 | 77491968 | ID=Msa0704950-mRNA-1:exon:24619;Parent=Msa0704950-mRNA-1 |
| chr4_4 | exon | 77492310 | 77492401 | 77492310 | ID=Msa0704950-mRNA-1:exon:24620;Parent=Msa0704950-mRNA-1 |
| chr4_4 | exon | 77494176 | 77494335 | 77494176 | ID=Msa0704950-mRNA-1:exon:24621;Parent=Msa0704950-mRNA-1 |
| chr4_4 | five_prime_UTR | 77491813 | 77491876 | 77491813 | ID=Msa0704950-mRNA-1:five_prime_utr;Parent=Msa0704950-mRNA-1 |
| chr4_4 | five_prime_UTR | 77491968 | 77491972 | 77491968 | ID=Msa0704950-mRNA-1:five_prime_utr;Parent=Msa0704950-mRNA-1 |
| chr4_4 | CDS | 77491973 | 77492077 | 77491973 | ID=Msa0704950-mRNA-1:cds;Parent=Msa0704950-mRNA-1 |
| chr4_4 | CDS | 77492310 | 77492401 | 77492310 | ID=Msa0704950-mRNA-1:cds;Parent=Msa0704950-mRNA-1 |
| chr4_4 | CDS | 77494176 | 77494335 | 77494176 | ID=Msa0704950-mRNA-1:cds;Parent=Msa0704950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
