AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705390 MtrunA17_Chr8g0383571 99.546 441 2 0 1 441 1 441 0.0 894
Msa0705390 MtrunA17_Chr8g0383531 97.489 438 11 0 4 441 1 438 0.0 871
Msa0705390 MtrunA17_Chr5g0431161 48.352 91 47 0 101 191 35 125 4.19e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705390 AT5G09900.2 81.633 441 80 1 1 440 1 441 0.0 729
Msa0705390 AT5G09900.1 81.179 441 82 1 1 440 1 441 0.0 726
Msa0705390 AT5G64760.2 78.685 441 93 1 1 440 1 441 0.0 697
Msa0705390 AT5G64760.1 78.458 441 94 1 1 440 1 441 0.0 695
Msa0705390 AT5G64760.3 80.048 421 83 1 21 440 1 421 0.0 679
Msa0705390 AT5G09900.3 79.070 344 71 1 1 343 1 344 0.0 547

Find 111 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTTCAAAGCTGCTTTA+TGG 0.134030 4_4:+77979444 None:intergenic
AAACAACGATCTGATCATTT+AGG 0.167639 4_4:+77983861 None:intergenic
GACCATATTATCACCTTCTT+TGG 0.222140 4_4:+77982420 None:intergenic
CATTTGAGTATATGTAAATT+TGG 0.222921 4_4:-77978815 Msa0705390:three_prime_UTR
TGAAATTTGCCGCTGCTATA+AGG 0.251024 4_4:-77980568 Msa0705390:CDS
CATTGCTATCCTTTGCTGTT+TGG 0.295822 4_4:+77979555 None:intergenic
AACAACGATCTGATCATTTA+GGG 0.304111 4_4:+77983862 None:intergenic
GTGGTTGGTTGAGTGAAGTT+TGG 0.305336 4_4:+77984145 None:intergenic
CAAGAAACTTGCCAAGATTA+AGG 0.314974 4_4:-77982878 Msa0705390:CDS
GTTCAGGCCATTATGCATTC+AGG 0.317096 4_4:-77979126 Msa0705390:CDS
TCTTATCAGGTGGAAACTTT+TGG 0.318210 4_4:-77982699 Msa0705390:intron
TCATCCAATGGACAGCTCTT+TGG 0.322854 4_4:-77980135 Msa0705390:CDS
TGCCTCCTCAATATGTGATA+TGG 0.330493 4_4:-77979244 Msa0705390:CDS
CATCCAATGGACAGCTCTTT+GGG 0.333432 4_4:-77980134 Msa0705390:CDS
ATACCTTACCACCGACTTAC+CGG 0.339321 4_4:-77979020 Msa0705390:three_prime_UTR
CCCCTGTTCTTCCTTAATCT+TGG 0.345178 4_4:+77982867 None:intergenic
ACCATATTATCACCTTCTTT+GGG 0.346638 4_4:+77982421 None:intergenic
AGGATAACATACTGGAAGTT+TGG 0.347252 4_4:+77980277 None:intergenic
TGGTTGGTTGAGTGAAGTTT+GGG 0.364594 4_4:+77984146 None:intergenic
GTTCTTCATATTCTTTCGTT+TGG 0.365406 4_4:-77978945 Msa0705390:three_prime_UTR
TATGGACTGAAGTTGCCTTA+TGG 0.366194 4_4:-77979226 Msa0705390:CDS
ATGGACTGAAGTTGCCTTAT+GGG 0.381336 4_4:-77979225 Msa0705390:CDS
TAACTCATGGGCAGCAAACT+TGG 0.387347 4_4:-77979525 Msa0705390:CDS
TGCCAAGATTAAGGAAGAAC+AGG 0.388343 4_4:-77982869 Msa0705390:CDS
TTTATTACGAGCTAATGATT+AGG 0.390801 4_4:-77982351 Msa0705390:intron
ATTCGACATAGATGCATCTA+AGG 0.393010 4_4:-77982455 Msa0705390:CDS
TGCAGATATTCCGTCTCTAC+TGG 0.398939 4_4:-77982386 Msa0705390:CDS
TAGATCAAACATTATCATAA+AGG 0.400969 4_4:+77978846 None:intergenic
GCCCAAAGAAGGTGATAATA+TGG 0.427248 4_4:-77982422 Msa0705390:CDS
TTCAAGATAATCATTGTTGT+GGG 0.433017 4_4:+77980587 None:intergenic
GGTCCATAAAGCAGCTTTGA+AGG 0.436788 4_4:-77979447 Msa0705390:intron
TATCTACCCTGAATGCATAA+TGG 0.443188 4_4:+77979119 None:intergenic
TGAGAAGCATCTGTCTGATA+TGG 0.444884 4_4:-77979633 Msa0705390:CDS
TCAATACGAGTTTCAATATC+CGG 0.449985 4_4:+77983082 None:intergenic
ATGTTGAGATTGAGAGAGCT+AGG 0.451064 4_4:-77982906 Msa0705390:CDS
GCATCTATGTCGAATACTCT+TGG 0.459620 4_4:+77982463 None:intergenic
ATAATGGCCTGAACGCATAA+TGG 0.461298 4_4:+77979135 None:intergenic
TTTCAAGATAATCATTGTTG+TGG 0.472189 4_4:+77980586 None:intergenic
AACTACATACAAGACCGTTT+AGG 0.477075 4_4:+77978990 None:intergenic
TATGGTTGTTACCAAGGCTC+TGG 0.489637 4_4:-77979615 Msa0705390:CDS
TCGATTGTGCCTAGACCGCC+AGG 0.490883 4_4:-77982524 Msa0705390:CDS
TTCGTTTCTGTAGGCAAACA+TGG 0.492410 4_4:-77984017 Msa0705390:intron
TAGGATCTTGTCCGGTAAGT+CGG 0.493217 4_4:+77979009 None:intergenic
ATCGAAGATTACCATGGTTG+TGG 0.495657 4_4:+77984126 None:intergenic
ACGGTCTTGTATGTAGTTAG+TGG 0.500674 4_4:-77978985 Msa0705390:three_prime_UTR
GGAGAAACTGCTTGATCTTG+TGG 0.501917 4_4:-77979504 Msa0705390:CDS
CAAGGTGGAATTTAAAAGAC+TGG 0.502902 4_4:+77980324 None:intergenic
TTTGACAATGAGATGGCCTC+TGG 0.504799 4_4:-77980094 Msa0705390:CDS
AATCTTTGCAACCAGAGCCT+TGG 0.507062 4_4:+77979604 None:intergenic
GCAAAGATTGACAGACCAAT+GGG 0.508334 4_4:-77979590 Msa0705390:CDS
TTGTATCAAAATACTATGCA+AGG 0.512334 4_4:-77979895 Msa0705390:CDS
GCAATGATGTACTTAACTCA+TGG 0.517832 4_4:-77979538 Msa0705390:CDS
TTACCGGACAAGATCCTAAA+CGG 0.522572 4_4:-77979004 Msa0705390:three_prime_UTR
ACATTGAACAGTGTATCTGC+TGG 0.524074 4_4:-77983049 Msa0705390:CDS
GGACATAATCCTGGCGGTCT+AGG 0.525396 4_4:+77982515 None:intergenic
TCTCCCAAAGAGCTGTCCAT+TGG 0.527502 4_4:+77980131 None:intergenic
TTCAAATGAGAATCCCCATA+AGG 0.527715 4_4:+77979211 None:intergenic
CAAAGCTGCTTTATGGACCA+TGG 0.531327 4_4:+77979451 None:intergenic
ACGACGCGGTCAGCTCAAGC+AGG 0.533278 4_4:-77983831 Msa0705390:intron
TTCAGGCCATTATGCATTCA+GGG 0.533383 4_4:-77979125 Msa0705390:CDS
TTTGTGCACGGACATAATCC+TGG 0.535226 4_4:+77982506 None:intergenic
AGACCGTTTAGGATCTTGTC+CGG 0.536612 4_4:+77979001 None:intergenic
GTCTGATATGGTTGTTACCA+AGG 0.537128 4_4:-77979621 Msa0705390:CDS
TGTAACAGCTATGGTACAGC+AGG 0.546142 4_4:-77983128 Msa0705390:CDS
TGAAATGTTGCTCACTGTGT+TGG 0.548481 4_4:-77979192 Msa0705390:CDS
TGGAAACAGACTATTCCCAT+TGG 0.557174 4_4:+77979575 None:intergenic
TGAGATTGAGAGAGCTAGGT+TGG 0.557330 4_4:-77982902 Msa0705390:CDS
TTCTTGAGAGTATTTGTGCA+CGG 0.563823 4_4:+77982494 None:intergenic
AGTAGAGACGGAATATCTGC+AGG 0.564085 4_4:+77982388 None:intergenic
TTTATTGTGCAAGTGCAGCT+TGG 0.565928 4_4:-77978886 Msa0705390:three_prime_UTR
CATTGAACAGTGTATCTGCT+GGG 0.568762 4_4:-77983048 Msa0705390:CDS
TGTCCGGTAAGTCGGTGGTA+AGG 0.572093 4_4:+77979017 None:intergenic
TGCAAAGATTGACAGACCAA+TGG 0.572504 4_4:-77979591 Msa0705390:CDS
GAGGAAAATATGTTGGTGCT+TGG 0.574826 4_4:-77980374 Msa0705390:CDS
TGGACTGAAGTTGCCTTATG+GGG 0.576818 4_4:-77979224 Msa0705390:CDS
GAGAAACAAATGCGTCTCGC+CGG 0.580321 4_4:-77983956 Msa0705390:CDS
CGTCTCGCCGGCGAAATAGT+CGG 0.582458 4_4:-77983944 Msa0705390:CDS
ATCACAGGCTGTAACAGCTA+TGG 0.585065 4_4:-77983137 Msa0705390:intron
CAATGATGTACTTAACTCAT+GGG 0.587731 4_4:-77979537 Msa0705390:CDS
TCTAGTGCCGACTATTTCGC+CGG 0.590784 4_4:+77983937 None:intergenic
TTTAAAAGACTGGACTGCAT+CGG 0.598019 4_4:+77980334 None:intergenic
TGATTTGATGCAAGAAATTG+CGG 0.598896 4_4:-77982827 Msa0705390:intron
AGATCCTGAGGAAAATATGT+TGG 0.600984 4_4:-77980381 Msa0705390:CDS
AGATAGATTTCTATCCTCCA+AGG 0.603704 4_4:+77980306 None:intergenic
TTTGAAGCAGCTGGTCACCA+TGG 0.604172 4_4:-77980161 Msa0705390:CDS
TGTTTCAACTCCAGTAGAGA+CGG 0.610635 4_4:+77982376 None:intergenic
CATATATTGCCTTATAGCAG+CGG 0.613022 4_4:+77980559 None:intergenic
GCAATATATTGACGAGACAC+CGG 0.613740 4_4:-77983101 Msa0705390:CDS
AAGATTACCATGGTTGTGGT+TGG 0.614101 4_4:+77984130 None:intergenic
TCAGTCCATATCACATATTG+AGG 0.615157 4_4:+77979239 None:intergenic
AGGTGATAATATGGTCGAAG+AGG 0.618539 4_4:-77982413 Msa0705390:CDS
GAACGAGTTTGACAATGAGA+TGG 0.619618 4_4:-77980101 Msa0705390:CDS
CACTCAACCAACCACAACCA+TGG 0.619704 4_4:-77984137 Msa0705390:intron
CCTACCGGAATAAAATCAGT+AGG 0.625120 4_4:+77980513 None:intergenic
GCCAAGATTAAGGAAGAACA+GGG 0.626902 4_4:-77982868 Msa0705390:CDS
AATTTCTTGCATCAAATCAG+CGG 0.629438 4_4:+77982831 None:intergenic
TCACCATGGAAGTCATCCAA+TGG 0.630891 4_4:-77980147 Msa0705390:CDS
GAACAGTGTATCTGCTGGGA+AGG 0.631990 4_4:-77983044 Msa0705390:intron
AGTCTGTTTCCAAACAGCAA+AGG 0.634017 4_4:-77979564 Msa0705390:CDS
CTGGACTGCATCGGTGAATG+TGG 0.634478 4_4:+77980343 None:intergenic
GTCCATATCACATATTGAGG+AGG 0.639905 4_4:+77979242 None:intergenic
TCAAATACACAAGGAAACCA+TGG 0.640379 4_4:-77979468 Msa0705390:CDS
AGAACAGGGGCTTATAGCTG+AGG 0.642737 4_4:-77982854 Msa0705390:CDS
GATCTTGTCCGGTAAGTCGG+TGG 0.660906 4_4:+77979012 None:intergenic
TGTTGCTCACTGTGTTGGTG+AGG 0.668735 4_4:-77979187 Msa0705390:CDS
TCTTGCATATACAGATCCTG+AGG 0.670391 4_4:-77980393 Msa0705390:intron
GAGCTGTCATCAAATACACA+AGG 0.670564 4_4:-77979477 Msa0705390:CDS
TAGATTTCTATCCTCCAAGG+TGG 0.684299 4_4:+77980309 None:intergenic
TGTCCATTGGATGACTTCCA+TGG 0.689019 4_4:+77980144 None:intergenic
CCAAGATTAAGGAAGAACAG+GGG 0.732046 4_4:-77982867 Msa0705390:CDS
GTGCACGGACATAATCCTGG+CGG 0.759607 4_4:+77982509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAAATGATTTAATTTT+TGG + chr4_4:77982084-77982103 None:intergenic 10.0%
!! TAAATTTATTTATTTGTGTT+TGG - chr4_4:77982137-77982156 Msa0705390:intron 10.0%
!! AAATTTATTTATTTGTGTTT+GGG - chr4_4:77982138-77982157 Msa0705390:intron 10.0%
!!! AAAAAAAATAAAAAAGTGTA+AGG + chr4_4:77983027-77983046 None:intergenic 10.0%
!!! TTAGTTTATTTCTTTTTTAA+AGG - chr4_4:77983330-77983349 Msa0705390:intron 10.0%
!!! TAGTTTATTTCTTTTTTAAA+GGG - chr4_4:77983331-77983350 Msa0705390:intron 10.0%
!! AAGTTCATAAAATTACTAAT+AGG + chr4_4:77979426-77979445 None:intergenic 15.0%
!! AATTATACAACAACAATATA+TGG + chr4_4:77979812-77979831 None:intergenic 15.0%
!! AAAAACAATAAAAATACAGA+AGG + chr4_4:77980253-77980272 None:intergenic 15.0%
!!! TTCTGTATTTTTATTGTTTT+TGG - chr4_4:77980252-77980271 Msa0705390:intron 15.0%
!! GTTAATAATTAAAAACTTGT+TGG + chr4_4:77981249-77981268 None:intergenic 15.0%
!! AAAAAAGAAATAAACTAAGA+TGG + chr4_4:77983328-77983347 None:intergenic 15.0%
!!! AGTTTATTTCTTTTTTAAAG+GGG - chr4_4:77983332-77983351 Msa0705390:intron 15.0%
!!! AGTATGTAATTTTTGAAAAA+TGG - chr4_4:77983677-77983696 Msa0705390:intron 15.0%
!! AATATTACTTCAGAAATAAA+TGG + chr4_4:77983714-77983733 None:intergenic 15.0%
!!! TTTATTTCTGAAGTAATATT+TGG - chr4_4:77983714-77983733 Msa0705390:intron 15.0%
!! TTTCAATTGTAGATTTCTTA+TGG - chr4_4:77979318-77979337 Msa0705390:intron 20.0%
!! AATAAGTTGTTTATCCAAAA+AGG + chr4_4:77979527-77979546 None:intergenic 20.0%
!!! CTTAATTAAGTTTTATCTGT+AGG - chr4_4:77979595-77979614 Msa0705390:CDS 20.0%
!!! AAAACATATGTCCTTTAAAA+TGG + chr4_4:77980065-77980084 None:intergenic 20.0%
!!! TTTCTAATAAGTTACTGATT+TGG - chr4_4:77980451-77980470 Msa0705390:intron 20.0%
!!! TTCTAATAAGTTACTGATTT+GGG - chr4_4:77980452-77980471 Msa0705390:intron 20.0%
!! CAAATATAAATAATTGCAGT+CGG + chr4_4:77981003-77981022 None:intergenic 20.0%
!! AACTTATATCATTAGTAACA+AGG + chr4_4:77981333-77981352 None:intergenic 20.0%
!!! AAGTTCAAACTCATTTTATA+TGG + chr4_4:77981717-77981736 None:intergenic 20.0%
!! ATAAGGAAGAAAAAAAAATC+AGG + chr4_4:77982385-77982404 None:intergenic 20.0%
!! TACTATAAGATTCTGTTATA+CGG - chr4_4:77982569-77982588 Msa0705390:intron 20.0%
!! ATATTTGAACATGATTAGAA+AGG + chr4_4:77982790-77982809 None:intergenic 20.0%
!! TTATGTTTCAGTTATTTATG+TGG - chr4_4:77983063-77983082 Msa0705390:CDS 20.0%
!! TATGTTTCAGTTATTTATGT+GGG - chr4_4:77983064-77983083 Msa0705390:CDS 20.0%
!!! CTGTTAATAACTTTTTCTTA+TGG - chr4_4:77983225-77983244 Msa0705390:intron 20.0%
!! TTAATCATAATGCTTATTTC+TGG - chr4_4:77983748-77983767 Msa0705390:intron 20.0%
!! TGCACAATAAAATTAAAAAG+TGG + chr4_4:77984130-77984149 None:intergenic 20.0%
!! TAGATCAAACATTATCATAA+AGG + chr4_4:77984182-77984201 None:intergenic 20.0%
!! CATTTGAGTATATGTAAATT+TGG - chr4_4:77984210-77984229 Msa0705390:five_prime_UTR 20.0%
!!! TTGGGTTTTATTTAATCGAT+TGG - chr4_4:77979252-77979271 Msa0705390:intron 25.0%
!!! GTTTTATTTAATCGATTGGT+AGG - chr4_4:77979256-77979275 Msa0705390:intron 25.0%
! GAGAAGATAATAAAACAGAA+TGG + chr4_4:77980030-77980049 None:intergenic 25.0%
!! CTTAGCATTATCCATTTTAA+AGG - chr4_4:77980051-77980070 Msa0705390:CDS 25.0%
! ACACAATACAACATACAAAT+TGG + chr4_4:77980089-77980108 None:intergenic 25.0%
! TCTTCTACGTTAAATTGTTT+AGG - chr4_4:77980477-77980496 Msa0705390:intron 25.0%
! TTTATTACGAGCTAATGATT+AGG - chr4_4:77980674-77980693 Msa0705390:intron 25.0%
!! ATGTCCTATACTGTTAATTT+TGG - chr4_4:77980939-77980958 Msa0705390:intron 25.0%
! GATTCCAAAATTAACAGTAT+AGG + chr4_4:77980946-77980965 None:intergenic 25.0%
!!! ATTTTGGAATCTGAAAGATA+AGG - chr4_4:77980955-77980974 Msa0705390:intron 25.0%
!! ATCCTTTTTATCTATATCTG+TGG - chr4_4:77981139-77981158 Msa0705390:intron 25.0%
!! TCCTTTTTATCTATATCTGT+GGG - chr4_4:77981140-77981159 Msa0705390:intron 25.0%
!!! TGTTTTAATTCTTAGCTTGA+TGG - chr4_4:77981269-77981288 Msa0705390:intron 25.0%
! GTTATCTTGTACTGTATTTA+TGG - chr4_4:77981405-77981424 Msa0705390:intron 25.0%
! AGATTTGATACAAAATCGAT+GGG + chr4_4:77981539-77981558 None:intergenic 25.0%
! AAGATTTGATACAAAATCGA+TGG + chr4_4:77981540-77981559 None:intergenic 25.0%
! TGGAATTGGAAAGAAAATAA+GGG + chr4_4:77981595-77981614 None:intergenic 25.0%
! TTGGAATTGGAAAGAAAATA+AGG + chr4_4:77981596-77981615 None:intergenic 25.0%
!!! AACTTTGGAAATTTTGGAAT+TGG + chr4_4:77981609-77981628 None:intergenic 25.0%
! TTTCAGAATAGTTAAGAACT+GGG + chr4_4:77981671-77981690 None:intergenic 25.0%
!!! TATTCTGAAACAAAGCATTA+TGG - chr4_4:77981681-77981700 Msa0705390:intron 25.0%
!!! ATTTTTCAGAACAGTATCAA+TGG + chr4_4:77981802-77981821 None:intergenic 25.0%
! TTCATTTGAATTATGTGTGA+AGG - chr4_4:77981952-77981971 Msa0705390:intron 25.0%
! TCATTTGAATTATGTGTGAA+GGG - chr4_4:77981953-77981972 Msa0705390:intron 25.0%
! AGTAATGTAGAGTAAAGAAT+TGG - chr4_4:77982189-77982208 Msa0705390:intron 25.0%
!!! TTTTTTTTTCTTCCTTATGC+TGG - chr4_4:77982387-77982406 Msa0705390:CDS 25.0%
! TTCAAGATAATCATTGTTGT+GGG + chr4_4:77982441-77982460 None:intergenic 25.0%
! TTTCAAGATAATCATTGTTG+TGG + chr4_4:77982442-77982461 None:intergenic 25.0%
!!! AAATCCTACTGATTTTATTC+CGG - chr4_4:77982508-77982527 Msa0705390:CDS 25.0%
! GTATATGCAAGAACAATATT+TGG + chr4_4:77982624-77982643 None:intergenic 25.0%
! TTGTATCAAAATACTATGCA+AGG - chr4_4:77983130-77983149 Msa0705390:CDS 25.0%
! CAAAGAAAAAACTATATCCT+TGG - chr4_4:77983267-77983286 Msa0705390:intron 25.0%
! TTATGCAAGAGTAATTGATT+AGG + chr4_4:77983362-77983381 None:intergenic 25.0%
AACAACGATCTGATCATTTA+GGG + chr4_4:77979166-77979185 None:intergenic 30.0%
AAACAACGATCTGATCATTT+AGG + chr4_4:77979167-77979186 None:intergenic 30.0%
! AAATTGATGCGTTTTGTGTT+AGG - chr4_4:77979227-77979246 Msa0705390:CDS 30.0%
! AATTGATGCGTTTTGTGTTA+GGG - chr4_4:77979228-77979247 Msa0705390:CDS 30.0%
TTTAATCGATTGGTAGGTTT+AGG - chr4_4:77979262-77979281 Msa0705390:intron 30.0%
TTAATCGATTGGTAGGTTTA+GGG - chr4_4:77979263-77979282 Msa0705390:intron 30.0%
! TGTGTAGTTAGAAAGAGTTT+TGG - chr4_4:77979357-77979376 Msa0705390:intron 30.0%
! GTGTAGTTAGAAAGAGTTTT+GGG - chr4_4:77979358-77979377 Msa0705390:intron 30.0%
!!! TACGTTGTTTTAGACTTCAA+AGG - chr4_4:77979383-77979402 Msa0705390:intron 30.0%
!! GTTGTTTTCATATGCTATCT+TGG - chr4_4:77979660-77979679 Msa0705390:intron 30.0%
!! TGTCATAAGCTGTTTTCATA+AGG - chr4_4:77979722-77979741 Msa0705390:intron 30.0%
!! TAAGTTTTGTGAGACTGTAT+GGG + chr4_4:77979751-77979770 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTA+TGG + chr4_4:77979752-77979771 None:intergenic 30.0%
TTAAATAAGCCAATCCAAAC+AGG - chr4_4:77979786-77979805 Msa0705390:intron 30.0%
! GTGAGAATCGTGATATTTTA+CGG - chr4_4:77979842-77979861 Msa0705390:intron 30.0%
TCAATACGAGTTTCAATATC+CGG + chr4_4:77979946-77979965 None:intergenic 30.0%
AATTTCTTGCATCAAATCAG+CGG + chr4_4:77980197-77980216 None:intergenic 30.0%
TGATTTGATGCAAGAAATTG+CGG - chr4_4:77980198-77980217 Msa0705390:intron 30.0%
ATGTAATGTGCAATCTTATC+AGG - chr4_4:77980313-77980332 Msa0705390:CDS 30.0%
TTAGTGATGACAGAAATAGT+AGG - chr4_4:77980412-77980431 Msa0705390:intron 30.0%
ACCATATTATCACCTTCTTT+GGG + chr4_4:77980607-77980626 None:intergenic 30.0%
AAGAAATACTACAACGAAAC+AGG + chr4_4:77980717-77980736 None:intergenic 30.0%
!! TTCAGTTTCATTCACTTTTG+AGG - chr4_4:77980855-77980874 Msa0705390:intron 30.0%
!! TTCATTCACTTTTGAGGATA+TGG - chr4_4:77980861-77980880 Msa0705390:intron 30.0%
AATTTGAGTAAACACAAGCA+AGG + chr4_4:77981064-77981083 None:intergenic 30.0%
TCCCACAGATATAGATAAAA+AGG + chr4_4:77981144-77981163 None:intergenic 30.0%
!! CTATGATTTGTTTCTATGCT+TGG - chr4_4:77981164-77981183 Msa0705390:intron 30.0%
CCTAAGAAACTTAGATCATT+AGG + chr4_4:77981383-77981402 None:intergenic 30.0%
CCTAATGATCTAAGTTTCTT+AGG - chr4_4:77981380-77981399 Msa0705390:intron 30.0%
! TATTTATGGATTGCTAGAGT+TGG - chr4_4:77981419-77981438 Msa0705390:intron 30.0%
!! AGGGATAACTTTGGAAATTT+TGG + chr4_4:77981615-77981634 None:intergenic 30.0%
GTTTCAGAATAGTTAAGAAC+TGG + chr4_4:77981672-77981691 None:intergenic 30.0%
AGTATCAATGGTAAAAGACA+AGG + chr4_4:77981790-77981809 None:intergenic 30.0%
AGCAGCATAAATATAAACGA+CGG + chr4_4:77981916-77981935 None:intergenic 30.0%
CACACATAATTCAAATGAAC+AGG + chr4_4:77981951-77981970 None:intergenic 30.0%
!! AATTGTTGTTTGTCTACTGT+TGG - chr4_4:77982030-77982049 Msa0705390:intron 30.0%
!! CTACATATTTTTCTAGTACC+TGG - chr4_4:77982335-77982354 Msa0705390:intron 30.0%
AGTAAGAAATATCATGAACC+AGG + chr4_4:77982356-77982375 None:intergenic 30.0%
! ATCAGTAGGATTTTCTTTGA+TGG + chr4_4:77982501-77982520 None:intergenic 30.0%
TGAAAGATAGGATAACATAC+TGG + chr4_4:77982759-77982778 None:intergenic 30.0%
! TGTTTAGAATTCCTTGTCAT+TGG - chr4_4:77982812-77982831 Msa0705390:intron 30.0%
! TACAACAAGAATGTTCTGAA+AGG + chr4_4:77983115-77983134 None:intergenic 30.0%
!! TAACTTTTTCTTATGGTGTG+TGG - chr4_4:77983232-77983251 Msa0705390:intron 30.0%
!! AACTTTTTCTTATGGTGTGT+GGG - chr4_4:77983233-77983252 Msa0705390:intron 30.0%
CAATTACTCTTGCATAATTC+AGG - chr4_4:77983365-77983384 Msa0705390:intron 30.0%
CAATGATGTACTTAACTCAT+GGG - chr4_4:77983488-77983507 Msa0705390:intron 30.0%
ACAGTGAGAAAATTTGAGAA+AGG + chr4_4:77983632-77983651 None:intergenic 30.0%
GTTCTTCATATTCTTTCGTT+TGG - chr4_4:77984080-77984099 Msa0705390:intron 30.0%
GAATAGATCGAAGATTACCA+TGG + chr4_4:77978908-77978927 None:intergenic 35.0%
GACGTGAGATTAATAGTGAA+GGG + chr4_4:77978973-77978992 None:intergenic 35.0%
TGACGTGAGATTAATAGTGA+AGG + chr4_4:77978974-77978993 None:intergenic 35.0%
! GCTTTTCAATTCGTTTCTGT+AGG - chr4_4:77978999-77979018 Msa0705390:three_prime_UTR 35.0%
!! ATTTAGGGTTTTCCATGCTT+TGG + chr4_4:77979151-77979170 None:intergenic 35.0%
! TTTGGTTCGCTTGAAACTAT+CGG - chr4_4:77979287-77979306 Msa0705390:intron 35.0%
ACTGTTCAGTTCAGATACTA+TGG - chr4_4:77979500-77979519 Msa0705390:CDS 35.0%
! TCAGATACTATGGTCCTTTT+TGG - chr4_4:77979510-77979529 Msa0705390:CDS 35.0%
AATATATGGCCTGTTTGGAT+TGG + chr4_4:77979798-77979817 None:intergenic 35.0%
ACAACAATATATGGCCTGTT+TGG + chr4_4:77979803-77979822 None:intergenic 35.0%
AGCCTACTATATACTATCAC+AGG - chr4_4:77979873-77979892 Msa0705390:CDS 35.0%
AGCCTGTGATAGTATATAGT+AGG + chr4_4:77979878-77979897 None:intergenic 35.0%
CAAGAAACTTGCCAAGATTA+AGG - chr4_4:77980147-77980166 Msa0705390:CDS 35.0%
TAATGTGCAATCTTATCAGG+TGG - chr4_4:77980316-77980335 Msa0705390:CDS 35.0%
! TCTTATCAGGTGGAAACTTT+TGG - chr4_4:77980326-77980345 Msa0705390:CDS 35.0%
!! TTCTTGAGAGTATTTGTGCA+CGG + chr4_4:77980534-77980553 None:intergenic 35.0%
ATTCGACATAGATGCATCTA+AGG - chr4_4:77980570-77980589 Msa0705390:CDS 35.0%
GAAAAGAAAAAGCCCAAAGA+AGG - chr4_4:77980592-77980611 Msa0705390:CDS 35.0%
GACCATATTATCACCTTCTT+TGG + chr4_4:77980608-77980627 None:intergenic 35.0%
! ACTTGTAGTTACAAGTACTG+TGG - chr4_4:77980746-77980765 Msa0705390:intron 35.0%
GTAGATACTCTAAATTGTCC+TGG - chr4_4:77980821-77980840 Msa0705390:intron 35.0%
!!! TGAGGATATGGTTTTGATGT+TGG - chr4_4:77980873-77980892 Msa0705390:intron 35.0%
GACATTAATGCATCACTGTT+AGG + chr4_4:77980924-77980943 None:intergenic 35.0%
!! TTGTTTCTATGCTTGGCATT+TGG - chr4_4:77981171-77981190 Msa0705390:intron 35.0%
GATGAAAAGTAGGGATGAAA+GGG + chr4_4:77981634-77981653 None:intergenic 35.0%
AGATGAAAAGTAGGGATGAA+AGG + chr4_4:77981635-77981654 None:intergenic 35.0%
GCAGACAAAGATGAAAAGTA+GGG + chr4_4:77981643-77981662 None:intergenic 35.0%
AGCAGACAAAGATGAAAAGT+AGG + chr4_4:77981644-77981663 None:intergenic 35.0%
AAGGAATCCAAATGTTAGGA+AGG + chr4_4:77981771-77981790 None:intergenic 35.0%
AGACAAGGAATCCAAATGTT+AGG + chr4_4:77981775-77981794 None:intergenic 35.0%
AAAACATGTTGCAAGAGTGA+AGG + chr4_4:77982059-77982078 None:intergenic 35.0%
ACCCAAGTTTAGAAAGCTAT+GGG + chr4_4:77982245-77982264 None:intergenic 35.0%
AACCCAAGTTTAGAAAGCTA+TGG + chr4_4:77982246-77982265 None:intergenic 35.0%
! GGTTTTCTGTCTGTGATTTT+AGG - chr4_4:77982408-77982427 Msa0705390:CDS 35.0%
CATATATTGCCTTATAGCAG+CGG + chr4_4:77982469-77982488 None:intergenic 35.0%
! GTAGGATTTTCTTTGATGGA+CGG + chr4_4:77982497-77982516 None:intergenic 35.0%
AAAGAGAATAGAAAGCCTAC+CGG + chr4_4:77982530-77982549 None:intergenic 35.0%
AGATCCTGAGGAAAATATGT+TGG - chr4_4:77982644-77982663 Msa0705390:intron 35.0%
TTTAAAAGACTGGACTGCAT+CGG + chr4_4:77982694-77982713 None:intergenic 35.0%
CAAGGTGGAATTTAAAAGAC+TGG + chr4_4:77982704-77982723 None:intergenic 35.0%
! CAGTCTTTTAAATTCCACCT+TGG - chr4_4:77982702-77982721 Msa0705390:intron 35.0%
! TCTTTTAAATTCCACCTTGG+AGG - chr4_4:77982705-77982724 Msa0705390:intron 35.0%
AGATAGATTTCTATCCTCCA+AGG + chr4_4:77982722-77982741 None:intergenic 35.0%
AGGATAACATACTGGAAGTT+TGG + chr4_4:77982751-77982770 None:intergenic 35.0%
AAGGATGAGAGATGAAAGAT+AGG + chr4_4:77982771-77982790 None:intergenic 35.0%
TTCACTCAAAAACTTTCCAG+AGG + chr4_4:77982950-77982969 None:intergenic 35.0%
!! ACTTTTTCTTATGGTGTGTG+GGG - chr4_4:77983234-77983253 Msa0705390:intron 35.0%
ATATCCTTGGAAAGTGAATG+TGG - chr4_4:77983280-77983299 Msa0705390:intron 35.0%
GCAATGATGTACTTAACTCA+TGG - chr4_4:77983487-77983506 Msa0705390:intron 35.0%
TCAAATACACAAGGAAACCA+TGG - chr4_4:77983557-77983576 Msa0705390:intron 35.0%
! AAACCTTCAAAGCTGCTTTA+TGG + chr4_4:77983584-77983603 None:intergenic 35.0%
! CTTTGAAGGTTTAAGAAGGT+AGG - chr4_4:77983592-77983611 Msa0705390:intron 35.0%
AAGAAGGTAGGTCCATATAT+CGG - chr4_4:77983604-77983623 Msa0705390:intron 35.0%
!! TGCTTATTTCTGGTCATTTC+AGG - chr4_4:77983758-77983777 Msa0705390:intron 35.0%
TCAGTCCATATCACATATTG+AGG + chr4_4:77983789-77983808 None:intergenic 35.0%
TTCAAATGAGAATCCCCATA+AGG + chr4_4:77983817-77983836 None:intergenic 35.0%
! TATTTTGCCATTATGCGTTC+AGG - chr4_4:77983883-77983902 Msa0705390:CDS 35.0%
TATCTACCCTGAATGCATAA+TGG + chr4_4:77983909-77983928 None:intergenic 35.0%
AACTACATACAAGACCGTTT+AGG + chr4_4:77984038-77984057 None:intergenic 35.0%
! TGGTTGGTTGAGTGAAGTTT+GGG + chr4_4:77978882-77978901 None:intergenic 40.0%
AAGATTACCATGGTTGTGGT+TGG + chr4_4:77978898-77978917 None:intergenic 40.0%
ATCGAAGATTACCATGGTTG+TGG + chr4_4:77978902-77978921 None:intergenic 40.0%
TTCGTTTCTGTAGGCAAACA+TGG - chr4_4:77979008-77979027 Msa0705390:three_prime_UTR 40.0%
!!! TCTGTTTTGAAGCCAAAGCA+TGG - chr4_4:77979136-77979155 Msa0705390:CDS 40.0%
!! GTTGTTTTGTCTAAACGACG+CGG - chr4_4:77979180-77979199 Msa0705390:CDS 40.0%
! ATGCGTTTTGTGTTAGGGTT+TGG - chr4_4:77979233-77979252 Msa0705390:CDS 40.0%
! TGCGTTTTGTGTTAGGGTTT+GGG - chr4_4:77979234-77979253 Msa0705390:CDS 40.0%
!! GATTGGTAGGTTTAGGGTTT+TGG - chr4_4:77979269-77979288 Msa0705390:intron 40.0%
GCAATATATTGACGAGACAC+CGG - chr4_4:77979924-77979943 Msa0705390:intron 40.0%
ACATTGAACAGTGTATCTGC+TGG - chr4_4:77979976-77979995 Msa0705390:intron 40.0%
CATTGAACAGTGTATCTGCT+GGG - chr4_4:77979977-77979996 Msa0705390:intron 40.0%
ATGTTGAGATTGAGAGAGCT+AGG - chr4_4:77980119-77980138 Msa0705390:CDS 40.0%
TGCCAAGATTAAGGAAGAAC+AGG - chr4_4:77980156-77980175 Msa0705390:CDS 40.0%
GCCAAGATTAAGGAAGAACA+GGG - chr4_4:77980157-77980176 Msa0705390:CDS 40.0%
CCAAGATTAAGGAAGAACAG+GGG - chr4_4:77980158-77980177 Msa0705390:CDS 40.0%
GCATCTATGTCGAATACTCT+TGG + chr4_4:77980565-77980584 None:intergenic 40.0%
GCCCAAAGAAGGTGATAATA+TGG - chr4_4:77980603-77980622 Msa0705390:intron 40.0%
AGGTGATAATATGGTCGAAG+AGG - chr4_4:77980612-77980631 Msa0705390:intron 40.0%
TGTTTCAACTCCAGTAGAGA+CGG + chr4_4:77980652-77980671 None:intergenic 40.0%
AACTGAAAACGCAGAAAACC+AGG + chr4_4:77980842-77980861 None:intergenic 40.0%
! TTATGGATTGCTAGAGTTGG+TGG - chr4_4:77981422-77981441 Msa0705390:intron 40.0%
AAAGTGCACAATTACAGTGC+AGG + chr4_4:77981503-77981522 None:intergenic 40.0%
! GCACTGTAATTGTGCACTTT+TGG - chr4_4:77981503-77981522 Msa0705390:intron 40.0%
AGGGATGAAAGGGATAACTT+TGG + chr4_4:77981624-77981643 None:intergenic 40.0%
! TTTAGAGCTGTCAAACTCTC+TGG - chr4_4:77981735-77981754 Msa0705390:intron 40.0%
TGGTCATCCTTCCTAACATT+TGG - chr4_4:77981761-77981780 Msa0705390:intron 40.0%
ACAAAACTCCTGTCATGACA+AGG - chr4_4:77981988-77982007 Msa0705390:intron 40.0%
TTCCTAAACCTTGTCATGAC+AGG + chr4_4:77981999-77982018 None:intergenic 40.0%
GTCATGACAAGGTTTAGGAA+AGG - chr4_4:77981999-77982018 Msa0705390:intron 40.0%
GAGTAAAGAATTGGTCACAG+TGG - chr4_4:77982198-77982217 Msa0705390:intron 40.0%
TCCCCATAGCTTTCTAAACT+TGG - chr4_4:77982240-77982259 Msa0705390:intron 40.0%
CCCAAGTTTAGAAAGCTATG+GGG + chr4_4:77982244-77982263 None:intergenic 40.0%
CCCCATAGCTTTCTAAACTT+GGG - chr4_4:77982241-77982260 Msa0705390:intron 40.0%
ACAGACAGAAAACCAGCATA+AGG + chr4_4:77982402-77982421 None:intergenic 40.0%
TGAAATTTGCCGCTGCTATA+AGG - chr4_4:77982457-77982476 Msa0705390:CDS 40.0%
CCTACCGGAATAAAATCAGT+AGG + chr4_4:77982515-77982534 None:intergenic 40.0%
!!! CCTACTGATTTTATTCCGGT+AGG - chr4_4:77982512-77982531 Msa0705390:CDS 40.0%
TCTTGCATATACAGATCCTG+AGG - chr4_4:77982632-77982651 Msa0705390:intron 40.0%
! AGCACCAACATATTTTCCTC+AGG + chr4_4:77982651-77982670 None:intergenic 40.0%
! GAGGAAAATATGTTGGTGCT+TGG - chr4_4:77982651-77982670 Msa0705390:intron 40.0%
TAGATTTCTATCCTCCAAGG+TGG + chr4_4:77982719-77982738 None:intergenic 40.0%
AACAGGTACAACCAATGACA+AGG + chr4_4:77982826-77982845 None:intergenic 40.0%
GAACGAGTTTGACAATGAGA+TGG - chr4_4:77982924-77982943 Msa0705390:intron 40.0%
TACTAGCATTACACACCTCT+AGG + chr4_4:77983194-77983213 None:intergenic 40.0%
GAGGTGTGTAATGCTAGTAA+TGG - chr4_4:77983195-77983214 Msa0705390:intron 40.0%
CTTGGAAAGTGAATGTGGTA+GGG - chr4_4:77983285-77983304 Msa0705390:intron 40.0%
TTGGAAAGTGAATGTGGTAG+GGG - chr4_4:77983286-77983305 Msa0705390:intron 40.0%
!! TGAGAAGCATCTGTCTGATA+TGG - chr4_4:77983392-77983411 Msa0705390:intron 40.0%
GTCTGATATGGTTGTTACCA+AGG - chr4_4:77983404-77983423 Msa0705390:intron 40.0%
TGCAAAGATTGACAGACCAA+TGG - chr4_4:77983434-77983453 Msa0705390:intron 40.0%
GCAAAGATTGACAGACCAAT+GGG - chr4_4:77983435-77983454 Msa0705390:intron 40.0%
TGGAAACAGACTATTCCCAT+TGG + chr4_4:77983453-77983472 None:intergenic 40.0%
AGTCTGTTTCCAAACAGCAA+AGG - chr4_4:77983461-77983480 Msa0705390:intron 40.0%
!! CATTGCTATCCTTTGCTGTT+TGG + chr4_4:77983473-77983492 None:intergenic 40.0%
GAGCTGTCATCAAATACACA+AGG - chr4_4:77983548-77983567 Msa0705390:intron 40.0%
!! GCAGCTTTGAAGGTTTAAGA+AGG - chr4_4:77983588-77983607 Msa0705390:intron 40.0%
TTGAGAAAGGAGCCGATATA+TGG + chr4_4:77983619-77983638 None:intergenic 40.0%
TGCCTCCTCAATATGTGATA+TGG - chr4_4:77983781-77983800 Msa0705390:intron 40.0%
GTCCATATCACATATTGAGG+AGG + chr4_4:77983786-77983805 None:intergenic 40.0%
! TATGGACTGAAGTTGCCTTA+TGG - chr4_4:77983799-77983818 Msa0705390:intron 40.0%
! ATGGACTGAAGTTGCCTTAT+GGG - chr4_4:77983800-77983819 Msa0705390:intron 40.0%
TGAAATGTTGCTCACTGTGT+TGG - chr4_4:77983833-77983852 Msa0705390:CDS 40.0%
ATAATGGCCTGAACGCATAA+TGG + chr4_4:77983893-77983912 None:intergenic 40.0%
TTCAGGCCATTATGCATTCA+GGG - chr4_4:77983900-77983919 Msa0705390:CDS 40.0%
TTACCGGACAAGATCCTAAA+CGG - chr4_4:77984021-77984040 Msa0705390:intron 40.0%
! ACGGTCTTGTATGTAGTTAG+TGG - chr4_4:77984040-77984059 Msa0705390:intron 40.0%
TTTATTGTGCAAGTGCAGCT+TGG - chr4_4:77984139-77984158 Msa0705390:exon 40.0%
! GTGGTTGGTTGAGTGAAGTT+TGG + chr4_4:77978883-77978902 None:intergenic 45.0%
ATCACAGGCTGTAACAGCTA+TGG - chr4_4:77979888-77979907 Msa0705390:CDS 45.0%
TGTAACAGCTATGGTACAGC+AGG - chr4_4:77979897-77979916 Msa0705390:CDS 45.0%
TGAGATTGAGAGAGCTAGGT+TGG - chr4_4:77980123-77980142 Msa0705390:CDS 45.0%
CCCCTGTTCTTCCTTAATCT+TGG + chr4_4:77980161-77980180 None:intergenic 45.0%
!! GGTGGAAACTTTTGGTGCAA+TGG - chr4_4:77980334-77980353 Msa0705390:CDS 45.0%
TTTGTGCACGGACATAATCC+TGG + chr4_4:77980522-77980541 None:intergenic 45.0%
AGTAGAGACGGAATATCTGC+AGG + chr4_4:77980640-77980659 None:intergenic 45.0%
TGCAGATATTCCGTCTCTAC+TGG - chr4_4:77980639-77980658 Msa0705390:intron 45.0%
TGGTTCCAAAGACGAAAGTG+CGG - chr4_4:77981191-77981210 Msa0705390:intron 45.0%
! CGGATTGGAGTACATGTTTG+TGG - chr4_4:77981211-77981230 Msa0705390:intron 45.0%
GCTGTCAAACTCTCTGGTTA+TGG - chr4_4:77981741-77981760 Msa0705390:intron 45.0%
ATTATGTGTGAAGGGCAACC+AGG - chr4_4:77981961-77981980 Msa0705390:intron 45.0%
CTCCTGTCATGACAAGGTTT+AGG - chr4_4:77981994-77982013 Msa0705390:intron 45.0%
TGGTCACAGTGGAGTATATG+TGG - chr4_4:77982209-77982228 Msa0705390:intron 45.0%
CGATTTCACAGTCAGTGAAG+TGG + chr4_4:77982281-77982300 None:intergenic 45.0%
TGTACCTGTTACACGTGTCT+AGG - chr4_4:77982836-77982855 Msa0705390:CDS 45.0%
!!! TAGGCTACTTTTGAAGCAGC+TGG - chr4_4:77982855-77982874 Msa0705390:CDS 45.0%
TCACCATGGAAGTCATCCAA+TGG - chr4_4:77982878-77982897 Msa0705390:CDS 45.0%
TGTCCATTGGATGACTTCCA+TGG + chr4_4:77982884-77982903 None:intergenic 45.0%
TCATCCAATGGACAGCTCTT+TGG - chr4_4:77982890-77982909 Msa0705390:CDS 45.0%
CATCCAATGGACAGCTCTTT+GGG - chr4_4:77982891-77982910 Msa0705390:CDS 45.0%
TTTGACAATGAGATGGCCTC+TGG - chr4_4:77982931-77982950 Msa0705390:intron 45.0%
CCTACCACATTCACTTTCCA+AGG + chr4_4:77983287-77983306 None:intergenic 45.0%
CCTTGGAAAGTGAATGTGGT+AGG - chr4_4:77983284-77983303 Msa0705390:intron 45.0%
TGAATGTGGTAGGGGAATTG+TGG - chr4_4:77983294-77983313 Msa0705390:intron 45.0%
TATGGTTGTTACCAAGGCTC+TGG - chr4_4:77983410-77983429 Msa0705390:intron 45.0%
AATCTTTGCAACCAGAGCCT+TGG + chr4_4:77983424-77983443 None:intergenic 45.0%
TAACTCATGGGCAGCAAACT+TGG - chr4_4:77983500-77983519 Msa0705390:intron 45.0%
GGAGAAACTGCTTGATCTTG+TGG - chr4_4:77983521-77983540 Msa0705390:intron 45.0%
! CAAAGCTGCTTTATGGACCA+TGG + chr4_4:77983577-77983596 None:intergenic 45.0%
! GGTCCATAAAGCAGCTTTGA+AGG - chr4_4:77983578-77983597 Msa0705390:intron 45.0%
TGGACTGAAGTTGCCTTATG+GGG - chr4_4:77983801-77983820 Msa0705390:intron 45.0%
GTTCAGGCCATTATGCATTC+AGG - chr4_4:77983899-77983918 Msa0705390:CDS 45.0%
!! ATACCTTACCACCGACTTAC+CGG - chr4_4:77984005-77984024 Msa0705390:CDS 45.0%
TAGGATCTTGTCCGGTAAGT+CGG + chr4_4:77984019-77984038 None:intergenic 45.0%
! AGACCGTTTAGGATCTTGTC+CGG + chr4_4:77984027-77984046 None:intergenic 45.0%
CACTCAACCAACCACAACCA+TGG - chr4_4:77978888-77978907 Msa0705390:three_prime_UTR 50.0%
GAGAAACAAATGCGTCTCGC+CGG - chr4_4:77979069-77979088 Msa0705390:exon 50.0%
!! TCTAGTGCCGACTATTTCGC+CGG + chr4_4:77979091-77979110 None:intergenic 50.0%
GAACAGTGTATCTGCTGGGA+AGG - chr4_4:77979981-77980000 Msa0705390:intron 50.0%
AGAACAGGGGCTTATAGCTG+AGG - chr4_4:77980171-77980190 Msa0705390:intron 50.0%
CCAATCCGCACTTTCGTCTT+TGG + chr4_4:77981199-77981218 None:intergenic 50.0%
! CCAAAGACGAAAGTGCGGAT+TGG - chr4_4:77981196-77981215 Msa0705390:intron 50.0%
GTAGCCTAGACACGTGTAAC+AGG + chr4_4:77982843-77982862 None:intergenic 50.0%
! TTTGAAGCAGCTGGTCACCA+TGG - chr4_4:77982864-77982883 Msa0705390:CDS 50.0%
TCTCCCAAAGAGCTGTCCAT+TGG + chr4_4:77982897-77982916 None:intergenic 50.0%
! GCTTTTGTGTCTCAGCCTAG+AGG - chr4_4:77983176-77983195 Msa0705390:intron 50.0%
! TGTTGCTCACTGTGTTGGTG+AGG - chr4_4:77983838-77983857 Msa0705390:CDS 50.0%
GGACATAATCCTGGCGGTCT+AGG + chr4_4:77980513-77980532 None:intergenic 55.0%
GTGCACGGACATAATCCTGG+CGG + chr4_4:77980519-77980538 None:intergenic 55.0%
GCAGTCGGACAGACAGTCAT+TGG + chr4_4:77980988-77981007 None:intergenic 55.0%
!! GACAGGAGTTTTGTAGCGCC+TGG + chr4_4:77981982-77982001 None:intergenic 55.0%
! CTGGACTGCATCGGTGAATG+TGG + chr4_4:77982685-77982704 None:intergenic 55.0%
TGTCCGGTAAGTCGGTGGTA+AGG + chr4_4:77984011-77984030 None:intergenic 55.0%
GATCTTGTCCGGTAAGTCGG+TGG + chr4_4:77984016-77984035 None:intergenic 55.0%
CGTCTCGCCGGCGAAATAGT+CGG - chr4_4:77979081-77979100 Msa0705390:CDS 60.0%
TCGATTGTGCCTAGACCGCC+AGG - chr4_4:77980501-77980520 Msa0705390:intron 60.0%
ACGACGCGGTCAGCTCAAGC+AGG - chr4_4:77979194-77979213 Msa0705390:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77978801 77984246 77978801 ID=Msa0705390;Name=Msa0705390
chr4_4 mRNA 77978801 77984246 77978801 ID=Msa0705390-mRNA-1;Parent=Msa0705390;Name=Msa0705390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=86|0.91|0.92|1|0.91|0.84|13|269|505
chr4_4 exon 77978801 77979267 77978801 ID=Msa0705390-mRNA-1:exon:24879;Parent=Msa0705390-mRNA-1
chr4_4 exon 77979448 77979660 77979448 ID=Msa0705390-mRNA-1:exon:24878;Parent=Msa0705390-mRNA-1
chr4_4 exon 77979850 77979927 77979850 ID=Msa0705390-mRNA-1:exon:24877;Parent=Msa0705390-mRNA-1
chr4_4 exon 77980039 77980189 77980039 ID=Msa0705390-mRNA-1:exon:24876;Parent=Msa0705390-mRNA-1
chr4_4 exon 77980289 77980401 77980289 ID=Msa0705390-mRNA-1:exon:24875;Parent=Msa0705390-mRNA-1
chr4_4 exon 77980518 77980617 77980518 ID=Msa0705390-mRNA-1:exon:24874;Parent=Msa0705390-mRNA-1
chr4_4 exon 77982352 77982548 77982352 ID=Msa0705390-mRNA-1:exon:24873;Parent=Msa0705390-mRNA-1
chr4_4 exon 77982656 77982712 77982656 ID=Msa0705390-mRNA-1:exon:24872;Parent=Msa0705390-mRNA-1
chr4_4 exon 77982828 77982932 77982828 ID=Msa0705390-mRNA-1:exon:24871;Parent=Msa0705390-mRNA-1
chr4_4 exon 77983045 77983152 77983045 ID=Msa0705390-mRNA-1:exon:24870;Parent=Msa0705390-mRNA-1
chr4_4 exon 77983832 77984026 77983832 ID=Msa0705390-mRNA-1:exon:24869;Parent=Msa0705390-mRNA-1
chr4_4 exon 77984138 77984184 77984138 ID=Msa0705390-mRNA-1:exon:24868;Parent=Msa0705390-mRNA-1
chr4_4 exon 77984205 77984246 77984205 ID=Msa0705390-mRNA-1:exon:24867;Parent=Msa0705390-mRNA-1
chr4_4 five_prime_UTR 77984205 77984246 77984205 ID=Msa0705390-mRNA-1:five_prime_utr;Parent=Msa0705390-mRNA-1
chr4_4 five_prime_UTR 77984141 77984184 77984141 ID=Msa0705390-mRNA-1:five_prime_utr;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77984138 77984140 77984138 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77983832 77984026 77983832 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77983045 77983152 77983045 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77982828 77982932 77982828 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77982656 77982712 77982656 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77982352 77982548 77982352 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77980518 77980617 77980518 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77980289 77980401 77980289 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77980039 77980189 77980039 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77979850 77979927 77979850 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77979448 77979660 77979448 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 CDS 77979070 77979267 77979070 ID=Msa0705390-mRNA-1:cds;Parent=Msa0705390-mRNA-1
chr4_4 three_prime_UTR 77978801 77979069 77978801 ID=Msa0705390-mRNA-1:three_prime_utr;Parent=Msa0705390-mRNA-1
Gene Sequence

>Msa0705390

ATGGCAAACATGGAGAATCTAGATGCAAAGATAGAACAATTGCTTAACGTCGAGAAACAAATGCGTCTCGCCGGCGAAATAGTCGGCACTAGAAAAGCTGCAATCGACATCTTGCAACTCTGTTTTGAAGCCAAAGCATGGAAAACCCTAAATGATCAGATCGTTGTTTTGTCTAAACGACGCGGTCAGCTCAAGCAGGCTGTAACAGCTATGGTACAGCAGGCTATGCAATATATTGACGAGACACCGGATATTGAAACTCGTATTGAACTTATCAAAACATTGAACAGTGTATCTGCTGGGAAGATATATGTTGAGATTGAGAGAGCTAGGTTGGTCAAGAAACTTGCCAAGATTAAGGAAGAACAGGGGCTTATAGCTGAGGCCGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCAATGGCAAAAACTGAGAAAATTGCATTCATTCTCGAACAAGTTCGATTGTGCCTAGACCGCCAGGATTATGTCCGTGCACAAATACTCTCAAGAAAGATAAGTCCAAGAGTATTCGACATAGATGCATCTAAGGAAAAGAAAAAGCCCAAAGAAGGTGATAATATGGTCGAAGAGGCTCCTGCAGATATTCCGTCTCTACTGGAGTTGAAACAGATTTATTACGAGCTAATGATTAGGTATTATTCCCACAACAATGATTATCTTGAAATTTGCCGCTGCTATAAGGCAATATATGAGATTCCGTCCATCAAAGAAAATCCTACTGATTTTATTCCGATCCTGAGGAAAATATGTTGGTGCTTGGTTCTAGCACCACATTCACCGATGCAGTCCAGTCTTTTAAATTCCACCTTGGAGGATAGAAATCTATCTGAGATTCCAAACTTCCAGCTACTTTTGAAGCAGCTGGTCACCATGGAAGTCATCCAATGGACAGCTCTTTGGGAGACATATAAGAACGAGTTTGACAATGAGATGGCCTCTGGAAAGTTTTTGAGTGAAAAAGCAGCTGAAGATCTGAAACAGAGAATTATTGAACATAACATTCTTGTTGTATCAAAATACTATGCAAGGATTACTTTGAAGAGACTTGCACAGCTTTTGTGTCTCAGCCTAGAGGAAGCTGAGAAGCATCTGTCTGATATGGTTGTTACCAAGGCTCTGGTTGCAAAGATTGACAGACCAATGGGAATAGTCTGTTTCCAAACAGCAAAGGATAGCAATGATGTACTTAACTCATGGGCAGCAAACTTGGAGAAACTGCTTGATCTTGTGGAGAAGAGCTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCAGCTTTGAAGGTGCCTCCTCAATATGTGATATGGACTGAAGTTGCCTTATGGGGATTCTCATTTGAAATGTTGCTCACTGTGTTGGTGAGGAATAACAATTGTCTCAAATTTATATTTTGCCATTATGCGTTCAGGCCATTATGCATTCAGGGTAGATATGATATGATTCTTAGTACTGAAAGTAGCTTTGTTGTATACTACTTTTAA

Protein sequence

>Msa0705390

MANMENLDAKIEQLLNVEKQMRLAGEIVGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDIETRIELIKTLNSVSAGKIYVEIERARLVKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDIDASKEKKKPKEGDNMVEEAPADIPSLLELKQIYYELMIRYYSHNNDYLEICRCYKAIYEIPSIKENPTDFIPILRKICWCLVLAPHSPMQSSLLNSTLEDRNLSEIPNFQLLLKQLVTMEVIQWTALWETYKNEFDNEMASGKFLSEKAAEDLKQRIIEHNILVVSKYYARITLKRLAQLLCLSLEEAEKHLSDMVVTKALVAKIDRPMGIVCFQTAKDSNDVLNSWAANLEKLLDLVEKSCHQIHKETMVHKAALKVPPQYVIWTEVALWGFSFEMLLTVLVRNNNCLKFIFCHYAFRPLCIQGRYDMILSTESSFVVYYF*