AlfalfaGEDB | Msa0713880

M. sativa cultivar zhongmu-4 / Msa0713880

KEGG: K00860
GO: GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464
PFAM: PF01583.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713880	XP_003611582.2	77.778	315	17	2	1	262	1	315	1.77e-168	478

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713880	sp\|O49204\|KAPS_CATRO	58.986	217	44	2	90	262	97	312	9.05e-82	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713880	G7K2I9	77.778	315	17	2	1	262	1	315	8.46e-169	478

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001960	Msa0713880	0.802254	6.121366e-49	-8.615850e-47
Msa0089870	Msa0713880	0.804797	1.818090e-49	-8.615850e-47
Msa0191890	Msa0713880	0.815176	1.056963e-51	-8.615850e-47
Msa0341540	Msa0713880	0.816120	6.513944e-52	-8.615850e-47
Msa0432670	Msa0713880	0.807792	4.251071e-50	-8.615850e-47
Msa0579660	Msa0713880	0.808225	3.438496e-50	-8.615850e-47
Msa0713880	Msa1147740	0.803409	3.533864e-49	-8.615850e-47
Msa0713880	Msa1238820	0.812769	3.588365e-51	-8.615850e-47
Msa0713880	Msa1348090	0.810318	1.223388e-50	-8.615850e-47
Msa0713880	Msa1358690	0.951825	8.999585e-110	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713880	MtrunA17_Chr5g0401171	77.778	315	17	2	1	262	1	315	1.63e-172	478
Msa0713880	MtrunA17_Chr4g0054041	52.903	310	86	5	1	262	1	298	2.00e-100	295
Msa0713880	MtrunA17_Chr7g0253331	50.244	205	59	1	99	260	1	205	2.05e-70	215

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713880	AT2G14750.1	55.189	212	54	2	92	262	65	276	1.67e-77	236
Msa0713880	AT3G03900.2	53.883	206	52	1	99	261	1	206	7.65e-73	222
Msa0713880	AT3G03900.1	53.883	206	52	1	99	261	1	206	7.65e-73	222
Msa0713880	AT4G39940.1	55.500	200	45	1	105	260	92	291	2.31e-71	221
Msa0713880	AT5G67520.3	72.519	131	36	0	102	232	83	213	4.23e-71	219
Msa0713880	AT5G67520.2	72.519	131	36	0	102	232	83	213	4.23e-71	219
Msa0713880	AT5G67520.1	72.519	131	36	0	102	232	83	213	4.01e-70	218
Msa0713880	AT3G03900.3	73.282	131	35	0	99	229	1	131	1.81e-68	208

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Find 78 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATAGAGATGCTTGC+AGG	0.370037	5_1:-6351275	Msa0713880:CDS
AAAATTCCACCACCACACTG+TGG	0.729351	5_1:+6354337	None:intergenic
AAAGGATAGAGATGCTTGCA+GGG	0.582569	5_1:-6351274	Msa0713880:CDS
AAATACAATCCGGATGCATG+TGG	0.647441	5_1:+6349432	None:intergenic
AACAGAATTCCGAAATACAG+GGG	0.699949	5_1:-6354157	Msa0713880:CDS
AACTGCTTCTCCAAGCAGCA+AGG	0.597930	5_1:-6349491	Msa0713880:three_prime_UTR
AAGTTAACATATATCCTTGA+TGG	0.466938	5_1:-6351526	Msa0713880:CDS
AAGTTCCGCATTCGATGTTC+TGG	0.330014	5_1:+6354314	None:intergenic
AAGTTTGTTGAAGCCGATCA+CGG	0.535327	5_1:-6354218	Msa0713880:CDS
AATAATTAGCAGAACATCAA+GGG	0.574500	5_1:+6349114	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACAGAATTCCGAAATACA+GGG	-	chr5_1:6349298-6349317	Msa0713880:three_prime_UTR	30.0%
TTATTCATCACACACTTGAT+TGG	+	chr5_1:6349464-6349483	None:intergenic	30.0%
AATCAAGTGTGTGATGAATA+AGG	-	chr5_1:6349463-6349482	Msa0713880:three_prime_UTR	30.0%
GAATCTGAATTTATCGTTTC+AGG	-	chr5_1:6349589-6349608	Msa0713880:CDS	30.0%
ATGATAGCATGAAGAAATAG+CGG	-	chr5_1:6349744-6349763	Msa0713880:intron	30.0%
TTATAGCGAATAGCTTATAG+TGG	-	chr5_1:6349799-6349818	Msa0713880:intron	30.0%
ATAACATGAGTAAAGTTGAG+AGG	-	chr5_1:6349943-6349962	Msa0713880:intron	30.0%
TAACATGAGTAAAGTTGAGA+GGG	-	chr5_1:6349944-6349963	Msa0713880:intron	30.0%
TATCATAAGACTTTGTGTAG+TGG	+	chr5_1:6350284-6350303	None:intergenic	30.0%
AACTTGTGTAAACAACTTGT+GGG	+	chr5_1:6350384-6350403	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	6349095	6354383	6349095	ID=Msa0713880;Name=Msa0713880
chr5_1	mRNA	6349095	6354383	6349095	ID=Msa0713880-mRNA-1;Parent=Msa0713880;Name=Msa0713880-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0.4\|0.66\|1\|0.2\|0.5\|6\|486\|262
chr5_1	exon	6349095	6349682	6349095	ID=Msa0713880-mRNA-1:exon:2687;Parent=Msa0713880-mRNA-1
chr5_1	exon	6351245	6351363	6351245	ID=Msa0713880-mRNA-1:exon:2686;Parent=Msa0713880-mRNA-1
chr5_1	exon	6351449	6351598	6351449	ID=Msa0713880-mRNA-1:exon:2685;Parent=Msa0713880-mRNA-1
chr5_1	exon	6352791	6352931	6352791	ID=Msa0713880-mRNA-1:exon:2684;Parent=Msa0713880-mRNA-1
chr5_1	exon	6354080	6354253	6354080	ID=Msa0713880-mRNA-1:exon:2683;Parent=Msa0713880-mRNA-1
chr5_1	exon	6354281	6354383	6354281	ID=Msa0713880-mRNA-1:exon:2682;Parent=Msa0713880-mRNA-1
chr5_1	CDS	6354281	6354383	6354281	ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1	CDS	6354080	6354253	6354080	ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1	CDS	6352791	6352931	6352791	ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1	CDS	6351449	6351598	6351449	ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1	CDS	6351245	6351363	6351245	ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1	CDS	6349581	6349682	6349581	ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1	three_prime_UTR	6349095	6349580	6349095	ID=Msa0713880-mRNA-1:three_prime_utr;Parent=Msa0713880-mRNA-1

Gene Sequence

>Msa0713880

ATGTGTTTCGTACAAGCACTGCAGCCACAGTGTGGTGGTGGAATTTTCCAGAACATCGAATGCGGAACTTCGACGGCGGAGAAGTTAGGATTTGTTAACTTCCGTCGTCGTCGAAGAAGTTTGTTGAAGCCGATCACGGCGAAAGAGGAGCATGAATCGTTTATTGTTGATGACGGTAACAGAATTCCGAAATACAGGGGAATTTCTGTGAATAAACGGAACTGTGTTAAAAATGAACCTGATTCATCTTTCATTGATTATTCTTCTGCATTTTCTGGTAAAAATCTCAGCAATTTGACAACAAATGGCAATTCAACAAACATTTTGTGGCATGAATGTTCAATCCAGAAGCTTGATAGACAGCAACTACTTCAACAAAAAGGCTGTGTCGTTTGGGTAACTGGTCTCAGCGGTTCAGGAAAAAGCACTCTGGCATGCGCTTTGAGTCGAAGCTTGCACTCGAGAGGAAAGTTAACATATATCCTTGATGGTGATAATATTCGACATGGTCTAAACCGTGATCTTAGTTTTAGAGCAGAAGATCGTTCAGAGAACATACGAAGGATTGGTGAAGTAGCTAAACTCTTGGCAGATGCAGGAGTTATTTGCATCACCAGTTTGATATCACCATACCAAAAGGATAGAGATGCTTGCAGGGCTCTACTGCCCAAAGGAGATTTTATTGAGATAGTATTGCATCAGCAAAAAGAAAGTGACTGTATGTCTCCAAGTAATGCGGCAGAAAAAGTAATATCCTACTTGGAGAAGAATGGGTACCTGCGGGCCTGA

Protein sequence

>Msa0713880

MCFVQALQPQCGGGIFQNIECGTSTAEKLGFVNFRRRRRSLLKPITAKEEHESFIVDDGNRIPKYRGISVNKRNCVKNEPDSSFIDYSSAFSGKNLSNLTTNGNSTNILWHECSIQKLDRQQLLQQKGCVVWVTGLSGSGKSTLACALSRSLHSRGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGEVAKLLADAGVICITSLISPYQKDRDACRALLPKGDFIEIVLHQQKESDCMSPSNAAEKVISYLEKNGYLRA*