AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713880 MtrunA17_Chr5g0401171 77.778 315 17 2 1 262 1 315 1.63e-172 478
Msa0713880 MtrunA17_Chr4g0054041 52.903 310 86 5 1 262 1 298 2.00e-100 295
Msa0713880 MtrunA17_Chr7g0253331 50.244 205 59 1 99 260 1 205 2.05e-70 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713880 AT2G14750.1 55.189 212 54 2 92 262 65 276 1.67e-77 236
Msa0713880 AT3G03900.2 53.883 206 52 1 99 261 1 206 7.65e-73 222
Msa0713880 AT3G03900.1 53.883 206 52 1 99 261 1 206 7.65e-73 222
Msa0713880 AT4G39940.1 55.500 200 45 1 105 260 92 291 2.31e-71 221
Msa0713880 AT5G67520.3 72.519 131 36 0 102 232 83 213 4.23e-71 219
Msa0713880 AT5G67520.2 72.519 131 36 0 102 232 83 213 4.23e-71 219
Msa0713880 AT5G67520.1 72.519 131 36 0 102 232 83 213 4.01e-70 218
Msa0713880 AT3G03900.3 73.282 131 35 0 99 229 1 131 1.81e-68 208

Find 78 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTGTGTCGTTTGGGTAAC+TGG 0.264792 5_1:-6352805 Msa0713880:CDS
GTTGCTGTCTATCAAGCTTC+TGG 0.282023 5_1:+6352842 None:intergenic
TGCAAGCATCTCTATCCTTT+TGG 0.283640 5_1:+6351277 None:intergenic
ATTAATATGATCTTATCTTT+TGG 0.300331 5_1:-6349303 Msa0713880:three_prime_UTR
AATACTTGATGTTACTTTGC+TGG 0.317044 5_1:-6349148 Msa0713880:three_prime_UTR
TACCTCAATAAAATCTCCTT+TGG 0.326099 5_1:+6351242 None:intergenic
GTGTCTTTCTTGTTTGTTGT+AGG 0.327041 5_1:-6349545 Msa0713880:three_prime_UTR
ACAGAAATTCCCCTGTATTT+CGG 0.327349 5_1:+6354148 None:intergenic
AAGTTCCGCATTCGATGTTC+TGG 0.330014 5_1:+6354314 None:intergenic
ACTTCGACGGCGGAGAAGTT+AGG 0.339004 5_1:-6354295 Msa0713880:CDS
CAGCAACTACTTCAACAAAA+AGG 0.364083 5_1:-6352826 Msa0713880:CDS
AAAAGGATAGAGATGCTTGC+AGG 0.370037 5_1:-6351275 Msa0713880:CDS
GTAACTGGTCTCAGCGGTTC+AGG 0.370998 5_1:-6352790 Msa0713880:intron
CTCAGCAATTTGACAACAAA+TGG 0.397415 5_1:-6352901 Msa0713880:CDS
ATCATTGTTCACTATGCATC+TGG 0.420661 5_1:-6349466 Msa0713880:three_prime_UTR
ATGCTGCTATTTCCAGTGAC+TGG 0.440926 5_1:+6349205 None:intergenic
GGGGAATTTCTGTGAATAAA+CGG 0.448574 5_1:-6354138 Msa0713880:CDS
GTAACAGAATTCCGAAATAC+AGG 0.451180 5_1:-6354159 Msa0713880:CDS
ACCTCAATAAAATCTCCTTT+GGG 0.452103 5_1:+6351243 None:intergenic
GCCTTCATTACATCAGTAAG+TGG 0.458142 5_1:-6349407 Msa0713880:three_prime_UTR
AAGTTAACATATATCCTTGA+TGG 0.466938 5_1:-6351526 Msa0713880:CDS
TGCTCCTCTTTCGCCGTGAT+CGG 0.469600 5_1:+6354205 None:intergenic
CCGGATGCATGTGGCTTGGA+TGG 0.479219 5_1:+6349441 None:intergenic
GGTGAGGAAGGAGCTGGTCT+TGG 0.479373 5_1:-6349376 Msa0713880:three_prime_UTR
TAATCAATGAAAGATGAATC+AGG 0.482943 5_1:+6354097 None:intergenic
GCTAAACTCTTGGCAGATGC+AGG 0.488790 5_1:-6351333 Msa0713880:CDS
ATATCCTACTTGGAGAAGAA+TGG 0.491660 5_1:-6349597 Msa0713880:CDS
TATCCTACTTGGAGAAGAAT+GGG 0.491666 5_1:-6349596 Msa0713880:CDS
CCATCCAAGCCACATGCATC+CGG 0.493820 5_1:-6349441 Msa0713880:three_prime_UTR
ACAATGATTTCCTTGCTGCT+TGG 0.501540 5_1:+6349481 None:intergenic
TCCACTTACTGATGTAATGA+AGG 0.508751 5_1:+6349406 None:intergenic
GACACCGTTCAAGCATCGTC+AGG 0.513990 5_1:+6349563 None:intergenic
TTGGTATGGTGATATCAAAC+TGG 0.514639 5_1:+6351296 None:intergenic
CGGGCCTGACGATGCTTGAA+CGG 0.515243 5_1:-6349567 Msa0713880:exon
ATCTATCTACAACCAGTCAC+TGG 0.515355 5_1:-6349217 Msa0713880:three_prime_UTR
TCAAGCATCGTCAGGCCCGC+AGG 0.516787 5_1:+6349571 None:intergenic
CTGCAGCCACAGTGTGGTGG+TGG 0.519914 5_1:-6354343 Msa0713880:CDS
AGGAAGGAGCTGGTCTTGGT+TGG 0.524092 5_1:-6349372 Msa0713880:three_prime_UTR
GAATAATTAGCAGAACATCA+AGG 0.527956 5_1:+6349113 None:intergenic
TTTGATATCACCATACCAAA+AGG 0.528738 5_1:-6351292 Msa0713880:CDS
TGGCAAACAAATGCTTCTTG+TGG 0.532487 5_1:-6349283 Msa0713880:three_prime_UTR
AAGTTTGTTGAAGCCGATCA+CGG 0.535327 5_1:-6354218 Msa0713880:CDS
GTCGAATATTATCACCATCA+AGG 0.540627 5_1:+6351512 None:intergenic
ATGAAGGCATAAATACAATC+CGG 0.540704 5_1:+6349422 None:intergenic
GAAGCCGATCACGGCGAAAG+AGG 0.545427 5_1:-6354209 Msa0713880:CDS
TCAGAGAACATACGAAGGAT+TGG 0.546139 5_1:-6351448 Msa0713880:intron
TGTAGATAGATATGTTACAT+TGG 0.547198 5_1:+6349229 None:intergenic
CATCGAATGCGGAACTTCGA+CGG 0.558793 5_1:-6354308 Msa0713880:CDS
CTGCTCTAAAACTAAGATCA+CGG 0.567587 5_1:+6351479 None:intergenic
GAATCGTTTATTGTTGATGA+CGG 0.567893 5_1:-6354181 Msa0713880:CDS
CAATCCGGATGCATGTGGCT+TGG 0.569787 5_1:+6349437 None:intergenic
GTGGAGTGGATCGGTGAGGA+AGG 0.573653 5_1:-6349388 Msa0713880:three_prime_UTR
AATAATTAGCAGAACATCAA+GGG 0.574500 5_1:+6349114 None:intergenic
AGGTGAAGTAGCTAAACTCT+TGG 0.578494 5_1:-6351343 Msa0713880:CDS
AAAGGATAGAGATGCTTGCA+GGG 0.582569 5_1:-6351274 Msa0713880:CDS
TAACAGAATTCCGAAATACA+GGG 0.585497 5_1:-6354158 Msa0713880:CDS
GGAGAAGAATGGGTACCTGC+GGG 0.591894 5_1:-6349586 Msa0713880:CDS
AGTCGAAGCTTGCACTCGAG+AGG 0.595301 5_1:-6351550 Msa0713880:CDS
GTACCCATTCTTCTCCAAGT+AGG 0.597668 5_1:+6349593 None:intergenic
AACTGCTTCTCCAAGCAGCA+AGG 0.597930 5_1:-6349491 Msa0713880:three_prime_UTR
TAATTGTTCAAAGCAGAACT+CGG 0.598029 5_1:+6349089 None:intergenic
GTTACTTTGCTGGTATAATG+AGG 0.600320 5_1:-6349138 Msa0713880:three_prime_UTR
CATCAGTAAGTGGAGTGGAT+CGG 0.603774 5_1:-6349397 Msa0713880:three_prime_UTR
TGGATCGGTGAGGAAGGAGC+TGG 0.610942 5_1:-6349382 Msa0713880:three_prime_UTR
CATTACATCAGTAAGTGGAG+TGG 0.618140 5_1:-6349402 Msa0713880:three_prime_UTR
TGGAGAAGAATGGGTACCTG+CGG 0.627754 5_1:-6349587 Msa0713880:CDS
TGCAGGGCTCTACTGCCCAA+AGG 0.632424 5_1:-6351258 Msa0713880:CDS
AAATACAATCCGGATGCATG+TGG 0.647441 5_1:+6349432 None:intergenic
CTGTATGTCTCCAAGTAATG+CGG 0.676662 5_1:-6349631 Msa0713880:CDS
GATGGTGATAATATTCGACA+TGG 0.683288 5_1:-6351508 Msa0713880:CDS
CGAATGCGGAACTTCGACGG+CGG 0.687952 5_1:-6354305 Msa0713880:CDS
ATCGTTCAGAGAACATACGA+AGG 0.694484 5_1:-6351453 Msa0713880:CDS
GTTTGGGTAACTGGTCTCAG+CGG 0.695742 5_1:-6352796 Msa0713880:CDS
AACAGAATTCCGAAATACAG+GGG 0.699949 5_1:-6354157 Msa0713880:CDS
GCACTGCAGCCACAGTGTGG+TGG 0.709496 5_1:-6354346 Msa0713880:CDS
CAAGCACTGCAGCCACAGTG+TGG 0.727033 5_1:-6354349 Msa0713880:CDS
GTAAGTGGAGTGGATCGGTG+AGG 0.727554 5_1:-6349392 Msa0713880:three_prime_UTR
AAAATTCCACCACCACACTG+TGG 0.729351 5_1:+6354337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTGTTCAAAAAAAAAA+AGG + chr5_1:6351780-6351799 None:intergenic 10.0%
!!! TAGTTTAGTTTTTTTTTTTT+TGG - chr5_1:6352470-6352489 Msa0713880:intron 10.0%
!!! AAATTAAGTTGTTTATTATG+AGG + chr5_1:6350145-6350164 None:intergenic 15.0%
!! ATACATTAAAAACTGATAAA+AGG + chr5_1:6350815-6350834 None:intergenic 15.0%
!! TATTCATGTGAAATTAAAAT+TGG - chr5_1:6351481-6351500 Msa0713880:CDS 15.0%
!! AATTGCTCAAAAAATATTAA+GGG + chr5_1:6352546-6352565 None:intergenic 15.0%
!! AAATTGCTCAAAAAATATTA+AGG + chr5_1:6352547-6352566 None:intergenic 15.0%
!! AAATATTATTGTTGCTAAAA+AGG - chr5_1:6353642-6353661 Msa0713880:intron 15.0%
!!! ATTAATATGATCTTATCTTT+TGG - chr5_1:6354153-6354172 Msa0713880:CDS 15.0%
!!! TATTCGTTTTATCTATTGAA+AGG + chr5_1:6349713-6349732 None:intergenic 20.0%
!! AGATAAAACGAATAAGAATT+AGG - chr5_1:6349719-6349738 Msa0713880:intron 20.0%
!! AAATTGAAAGCAATAAACTA+TGG + chr5_1:6350741-6350760 None:intergenic 20.0%
!!! TATCAGTTTTTAATGTATCT+AGG - chr5_1:6350817-6350836 Msa0713880:intron 20.0%
!! TACTAGAAAAAAAAATTGCA+GGG + chr5_1:6351117-6351136 None:intergenic 20.0%
!! AAAATATAGATTTCAGTTAG+CGG + chr5_1:6351410-6351429 None:intergenic 20.0%
!! TTAAATCTTTCATAACAACT+TGG + chr5_1:6351602-6351621 None:intergenic 20.0%
!! CATAAACAAAATAGCAAAAA+AGG + chr5_1:6352065-6352084 None:intergenic 20.0%
!! ATTGCACAATTTAAAAACTT+GGG + chr5_1:6352516-6352535 None:intergenic 20.0%
!! AATTGCACAATTTAAAAACT+TGG + chr5_1:6352517-6352536 None:intergenic 20.0%
!!! GTTTTTAAATTGTGCAATTT+TGG - chr5_1:6352518-6352537 Msa0713880:intron 20.0%
!! ATTGCTCAAAAAATATTAAG+GGG + chr5_1:6352545-6352564 None:intergenic 20.0%
!! AATTCTTAATTGCATTGAAT+TGG + chr5_1:6352767-6352786 None:intergenic 20.0%
!! AAAATTGCTCAAAAAAAACT+AGG - chr5_1:6353309-6353328 Msa0713880:intron 20.0%
!! AAATTGCTCAAAAAAAACTA+GGG - chr5_1:6353310-6353329 Msa0713880:intron 20.0%
!! CGATGCAAATAAAAAAAAAA+AGG + chr5_1:6353387-6353406 None:intergenic 20.0%
!!! TTTTTTTTTTATTTGCATCG+CGG - chr5_1:6353387-6353406 Msa0713880:intron 20.0%
! TAATCAATGAAAGATGAATC+AGG + chr5_1:6349362-6349381 None:intergenic 25.0%
! GATAAATTCAGATTCAGATT+CGG + chr5_1:6349584-6349603 None:intergenic 25.0%
! AATCTGAATTTATCGTTTCA+GGG - chr5_1:6349590-6349609 Msa0713880:CDS 25.0%
!!! TTTTGAAAAGAAGCTTGAAA+TGG - chr5_1:6349636-6349655 Msa0713880:CDS 25.0%
! CTAATTGAATTTGTAGTGTT+TGG - chr5_1:6349831-6349850 Msa0713880:intron 25.0%
!! TAATGTATCTAGGATTTCAT+TGG - chr5_1:6350827-6350846 Msa0713880:intron 25.0%
! TTCATCATATCATTTCTATC+AGG + chr5_1:6351083-6351102 None:intergenic 25.0%
! GTACTAGAAAAAAAAATTGC+AGG + chr5_1:6351118-6351137 None:intergenic 25.0%
! TAACTACGTACTCTATAATA+TGG + chr5_1:6351353-6351372 None:intergenic 25.0%
!!! CAAGTTCCACTTTTAATTTA+CGG - chr5_1:6351438-6351457 Msa0713880:intron 25.0%
! TATAAGCCGTAAATTAAAAG+TGG + chr5_1:6351447-6351466 None:intergenic 25.0%
!!! ACAGCTTCATTTTTATGTTT+CGG + chr5_1:6351521-6351540 None:intergenic 25.0%
!!! TATACTTAGACATTGATTTC+AGG - chr5_1:6351858-6351877 Msa0713880:intron 25.0%
! AAGTTAACATATATCCTTGA+TGG - chr5_1:6351930-6351949 Msa0713880:intron 25.0%
! TTGCACAATTTAAAAACTTG+GGG + chr5_1:6352515-6352534 None:intergenic 25.0%
! AAACAAATCAAACCACATAT+GGG + chr5_1:6352614-6352633 None:intergenic 25.0%
! AAAACAAATCAAACCACATA+TGG + chr5_1:6352615-6352634 None:intergenic 25.0%
!!! GATTTGTTTTAAGTCTATGA+TGG - chr5_1:6352625-6352644 Msa0713880:intron 25.0%
!!! TGATTTTTGGTTGATGAATA+CGG - chr5_1:6353097-6353116 Msa0713880:intron 25.0%
! AATTGCTCAAAAAAAACTAG+GGG - chr5_1:6353311-6353330 Msa0713880:intron 25.0%
!! GTTTTCAAATTGTGCAATTT+TGG + chr5_1:6353339-6353358 None:intergenic 25.0%
! AATTGCACAATTTGAAAACA+TGG - chr5_1:6353340-6353359 Msa0713880:intron 25.0%
! ATTGCACAATTTGAAAACAT+GGG - chr5_1:6353341-6353360 Msa0713880:intron 25.0%
! AGCATAATACATAGAATAGA+AGG + chr5_1:6353429-6353448 None:intergenic 25.0%
! CCAAATAGATAATTCAATAC+TGG + chr5_1:6353540-6353559 None:intergenic 25.0%
!! CCAGTATTGAATTATCTATT+TGG - chr5_1:6353537-6353556 Msa0713880:intron 25.0%
! AGAAAAAGTAATATCCTACT+TGG - chr5_1:6353849-6353868 Msa0713880:intron 25.0%
! TGTAGATAGATATGTTACAT+TGG + chr5_1:6354230-6354249 None:intergenic 25.0%
! AATAATTAGCAGAACATCAA+GGG + chr5_1:6354345-6354364 None:intergenic 25.0%
! GAATCGTTTATTGTTGATGA+CGG - chr5_1:6349275-6349294 Msa0713880:three_prime_UTR 30.0%
TAACAGAATTCCGAAATACA+GGG - chr5_1:6349298-6349317 Msa0713880:three_prime_UTR 30.0%
! GATTATTCTTCTGCATTTTC+TGG - chr5_1:6349377-6349396 Msa0713880:three_prime_UTR 30.0%
TTATTCATCACACACTTGAT+TGG + chr5_1:6349464-6349483 None:intergenic 30.0%
AATCAAGTGTGTGATGAATA+AGG - chr5_1:6349463-6349482 Msa0713880:three_prime_UTR 30.0%
! CACATCTATTGTAAAAGCAT+AGG + chr5_1:6349495-6349514 None:intergenic 30.0%
GAATCTGAATTTATCGTTTC+AGG - chr5_1:6349589-6349608 Msa0713880:CDS 30.0%
ATGATAGCATGAAGAAATAG+CGG - chr5_1:6349744-6349763 Msa0713880:intron 30.0%
TTATAGCGAATAGCTTATAG+TGG - chr5_1:6349799-6349818 Msa0713880:intron 30.0%
ATAACATGAGTAAAGTTGAG+AGG - chr5_1:6349943-6349962 Msa0713880:intron 30.0%
TAACATGAGTAAAGTTGAGA+GGG - chr5_1:6349944-6349963 Msa0713880:intron 30.0%
TATCATAAGACTTTGTGTAG+TGG + chr5_1:6350284-6350303 None:intergenic 30.0%
AACTTGTGTAAACAACTTGT+GGG + chr5_1:6350384-6350403 None:intergenic 30.0%
TTTACACAAGTTCTCAGAAA+TGG - chr5_1:6350392-6350411 Msa0713880:intron 30.0%
! GGTTCATTTGAGTTTATCTA+CGG + chr5_1:6350423-6350442 None:intergenic 30.0%
! GCAATTCAACAAACATTTTG+TGG - chr5_1:6350577-6350596 Msa0713880:intron 30.0%
AAACTGATAAAAGGAAGCTA+AGG + chr5_1:6350806-6350825 None:intergenic 30.0%
!!! TCAGCAGAAGCATTTTAAAA+CGG - chr5_1:6351258-6351277 Msa0713880:CDS 30.0%
! CCTTTCTTTTCCAACTATAA+CGG - chr5_1:6351671-6351690 Msa0713880:intron 30.0%
ATCTAGAAGAATGACAAGTA+AGG + chr5_1:6351813-6351832 None:intergenic 30.0%
AACATCATGAATGATGTTTC+AGG - chr5_1:6352093-6352112 Msa0713880:intron 30.0%
TTTGATATCACCATACCAAA+AGG - chr5_1:6352164-6352183 Msa0713880:intron 30.0%
ACCTCAATAAAATCTCCTTT+GGG + chr5_1:6352216-6352235 None:intergenic 30.0%
TACCTCAATAAAATCTCCTT+TGG + chr5_1:6352217-6352236 None:intergenic 30.0%
TGAGGTACATATACTTATTG+AGG - chr5_1:6352230-6352249 Msa0713880:intron 30.0%
TGCACAATTTAAAAACTTGG+GGG + chr5_1:6352514-6352533 None:intergenic 30.0%
GAGAATAGAAGAGATGAAAA+GGG + chr5_1:6352683-6352702 None:intergenic 30.0%
TGAGAATAGAAGAGATGAAA+AGG + chr5_1:6352684-6352703 None:intergenic 30.0%
TATCAAAGTATGTGTGAGTT+TGG - chr5_1:6352897-6352916 Msa0713880:CDS 30.0%
AAAGAAATCCAACCACATAT+GGG - chr5_1:6353243-6353262 Msa0713880:intron 30.0%
!! TGGGGACTTTAAAATCAAAA+AGG - chr5_1:6353268-6353287 Msa0713880:intron 30.0%
!! GGGGACTTTAAAATCAAAAA+GGG - chr5_1:6353269-6353288 Msa0713880:intron 30.0%
!! GGGACTTTAAAATCAAAAAG+GGG - chr5_1:6353270-6353289 Msa0713880:intron 30.0%
!! GGACTTTAAAATCAAAAAGG+GGG - chr5_1:6353271-6353290 Msa0713880:intron 30.0%
ATTGCTCAAAAAAAACTAGG+GGG - chr5_1:6353312-6353331 Msa0713880:intron 30.0%
TTGCACAATTTGAAAACATG+GGG - chr5_1:6353342-6353361 Msa0713880:intron 30.0%
TTATCTATTTGGAAATCTGC+AGG - chr5_1:6353548-6353567 Msa0713880:intron 30.0%
! ACTCTGACATCTTGTTTATA+AGG + chr5_1:6353697-6353716 None:intergenic 30.0%
GATCAAAGGAAAAACATAGT+TGG + chr5_1:6353723-6353742 None:intergenic 30.0%
! TTTTTCCTTTGATCAAACGT+CGG - chr5_1:6353729-6353748 Msa0713880:intron 30.0%
! ATGAAGGCATAAATACAATC+CGG + chr5_1:6354037-6354056 None:intergenic 30.0%
!! AATACTTGATGTTACTTTGC+TGG - chr5_1:6354308-6354327 Msa0713880:CDS 30.0%
GAATAATTAGCAGAACATCA+AGG + chr5_1:6354346-6354365 None:intergenic 30.0%
! ATTTTCCAGAACATCGAATG+CGG - chr5_1:6349137-6349156 Msa0713880:three_prime_UTR 35.0%
GTAACAGAATTCCGAAATAC+AGG - chr5_1:6349297-6349316 Msa0713880:three_prime_UTR 35.0%
AACAGAATTCCGAAATACAG+GGG - chr5_1:6349299-6349318 Msa0713880:three_prime_UTR 35.0%
ACAGAAATTCCCCTGTATTT+CGG + chr5_1:6349311-6349330 None:intergenic 35.0%
GGGGAATTTCTGTGAATAAA+CGG - chr5_1:6349318-6349337 Msa0713880:three_prime_UTR 35.0%
TTTCTCTCTACCAGCTAAAT+AGG - chr5_1:6349527-6349546 Msa0713880:three_prime_UTR 35.0%
TGAAAGGAATCAAACTGTCA+AGG + chr5_1:6349697-6349716 None:intergenic 35.0%
!! GCTATTTCTTCATGCTATCA+TGG + chr5_1:6349745-6349764 None:intergenic 35.0%
GTAGTGTTTGGTTAAATGAG+CGG - chr5_1:6349843-6349862 Msa0713880:intron 35.0%
AACATGAGTAAAGTTGAGAG+GGG - chr5_1:6349945-6349964 Msa0713880:intron 35.0%
GCTATAAATCCGTGAGAAAA+AGG - chr5_1:6350054-6350073 Msa0713880:intron 35.0%
!! GTTTGGTAACCTTTTTCTCA+CGG + chr5_1:6350066-6350085 None:intergenic 35.0%
TATGACAAAAGAGACTCGTT+TGG + chr5_1:6350083-6350102 None:intergenic 35.0%
GAACTTGTGTAAACAACTTG+TGG + chr5_1:6350385-6350404 None:intergenic 35.0%
AAAGTAGAAGCTGCTATATC+AGG + chr5_1:6350459-6350478 None:intergenic 35.0%
TACCTAGCTAGATGATAACT+GGG + chr5_1:6350530-6350549 None:intergenic 35.0%
TTACCTAGCTAGATGATAAC+TGG + chr5_1:6350531-6350550 None:intergenic 35.0%
CTCAGCAATTTGACAACAAA+TGG - chr5_1:6350555-6350574 Msa0713880:intron 35.0%
CAGCAACTACTTCAACAAAA+AGG - chr5_1:6350630-6350649 Msa0713880:intron 35.0%
! TACGCAGACTTTCACATTTT+TGG - chr5_1:6351149-6351168 Msa0713880:intron 35.0%
!!! CAGCAGAAGCATTTTAAAAC+GGG - chr5_1:6351259-6351278 Msa0713880:CDS 35.0%
!!! AAGCATTTTAAAACGGGACA+CGG - chr5_1:6351265-6351284 Msa0713880:CDS 35.0%
! TTGGTCTATTTTCCATCACA+TGG - chr5_1:6351298-6351317 Msa0713880:CDS 35.0%
TGGTATTCTGTGTCTATAGA+TGG - chr5_1:6351318-6351337 Msa0713880:CDS 35.0%
ATTCATAAGCCAAGATCAGT+AGG + chr5_1:6351573-6351592 None:intergenic 35.0%
CCGTTATAGTTGGAAAAGAA+AGG + chr5_1:6351674-6351693 None:intergenic 35.0%
TGTTGTAGAACATCTACAGA+TGG - chr5_1:6351698-6351717 Msa0713880:intron 35.0%
AGTATATCTAGAAACAGTGC+TGG + chr5_1:6351844-6351863 None:intergenic 35.0%
GTCGAATATTATCACCATCA+AGG + chr5_1:6351947-6351966 None:intergenic 35.0%
GATGGTGATAATATTCGACA+TGG - chr5_1:6351948-6351967 Msa0713880:intron 35.0%
!! CTGCTCTAAAACTAAGATCA+CGG + chr5_1:6351980-6351999 None:intergenic 35.0%
! GCAAAAAAGGTGCAAGAATA+AGG + chr5_1:6352052-6352071 None:intergenic 35.0%
TTGGTATGGTGATATCAAAC+TGG + chr5_1:6352163-6352182 None:intergenic 35.0%
TGAGAGATGTAAGATTGCAT+AGG + chr5_1:6352345-6352364 None:intergenic 35.0%
TCTAAGAAAACCTACAACAC+GGG + chr5_1:6352370-6352389 None:intergenic 35.0%
GTCTAAGAAAACCTACAACA+CGG + chr5_1:6352371-6352390 None:intergenic 35.0%
AAAAAGTGATCAGGTGTGAA+AGG + chr5_1:6352660-6352679 None:intergenic 35.0%
TGAAAAGGGAAAAAGTGATC+AGG + chr5_1:6352669-6352688 None:intergenic 35.0%
TGCATTGAATTGGACAATCT+TGG + chr5_1:6352757-6352776 None:intergenic 35.0%
GAGAAAGAGAAAACATAGAG+AGG + chr5_1:6352824-6352843 None:intergenic 35.0%
TCAAAAATACTTTCCCGCAA+CGG + chr5_1:6352989-6353008 None:intergenic 35.0%
!!! TTGCGGGAAAGTATTTTTGA+AGG - chr5_1:6352989-6353008 Msa0713880:intron 35.0%
!! TTTTTGAAGGAAGACAGTGA+AGG - chr5_1:6353002-6353021 Msa0713880:intron 35.0%
!! TTTTGAAGGAAGACAGTGAA+GGG - chr5_1:6353003-6353022 Msa0713880:intron 35.0%
!!! TTTTTGGTTGATGAATACGG+CGG - chr5_1:6353100-6353119 Msa0713880:intron 35.0%
GGAAATTGATCAAGTGTGAA+AGG - chr5_1:6353197-6353216 Msa0713880:intron 35.0%
CAAAGAAATCCAACCACATA+TGG - chr5_1:6353242-6353261 Msa0713880:intron 35.0%
AATCAAAAAGGGGGTAAACA+TGG - chr5_1:6353280-6353299 Msa0713880:intron 35.0%
ATCAAAAAGGGGGTAAACAT+GGG - chr5_1:6353281-6353300 Msa0713880:intron 35.0%
TGCACAATTTGAAAACATGG+GGG - chr5_1:6353343-6353362 Msa0713880:intron 35.0%
TGCTCACATTATGTTTATGC+TGG - chr5_1:6353445-6353464 Msa0713880:intron 35.0%
GCTCACATTATGTTTATGCT+GGG - chr5_1:6353446-6353465 Msa0713880:intron 35.0%
GATGCAATACTATCTGTAAG+AGG + chr5_1:6353789-6353808 None:intergenic 35.0%
ATATCCTACTTGGAGAAGAA+TGG - chr5_1:6353859-6353878 Msa0713880:intron 35.0%
TATCCTACTTGGAGAAGAAT+GGG - chr5_1:6353860-6353879 Msa0713880:intron 35.0%
!! GTGTCTTTCTTGTTTGTTGT+AGG - chr5_1:6353911-6353930 Msa0713880:intron 35.0%
ATCATTGTTCACTATGCATC+TGG - chr5_1:6353990-6354009 Msa0713880:intron 35.0%
TCCACTTACTGATGTAATGA+AGG + chr5_1:6354053-6354072 None:intergenic 35.0%
! GTTACTTTGCTGGTATAATG+AGG - chr5_1:6354318-6354337 Msa0713880:CDS 35.0%
! CAACGGCATTGAATCTATGA+CGG + chr5_1:6349199-6349218 None:intergenic 40.0%
AGATTCAATGCCGTTGGATT+AGG - chr5_1:6349203-6349222 Msa0713880:three_prime_UTR 40.0%
!! AAGTTTGTTGAAGCCGATCA+CGG - chr5_1:6349238-6349257 Msa0713880:three_prime_UTR 40.0%
TGTGAAGCAACCTATTTAGC+TGG + chr5_1:6349540-6349559 None:intergenic 40.0%
ATATCAGGATCTGTCTGTAC+TGG + chr5_1:6350444-6350463 None:intergenic 40.0%
! AACAAAAAGGCTGTGTCGTT+TGG - chr5_1:6350643-6350662 Msa0713880:intron 40.0%
!! ACAAAAAGGCTGTGTCGTTT+GGG - chr5_1:6350644-6350663 Msa0713880:intron 40.0%
AAGCCAAAACTAGCAGAGAA+TGG + chr5_1:6351022-6351041 None:intergenic 40.0%
TTAGCACGTGGTTGGAAAAA+AGG + chr5_1:6351053-6351072 None:intergenic 40.0%
GCAAAAAATTAGCACGTGGT+TGG + chr5_1:6351061-6351080 None:intergenic 40.0%
TCAGGCAAAAAATTAGCACG+TGG + chr5_1:6351065-6351084 None:intergenic 40.0%
!!! AGCATTTTAAAACGGGACAC+GGG - chr5_1:6351266-6351285 Msa0713880:CDS 40.0%
AGACACAGAATACCATGTGA+TGG + chr5_1:6351313-6351332 None:intergenic 40.0%
CATGTCAATCCTACTGATCT+TGG - chr5_1:6351561-6351580 Msa0713880:CDS 40.0%
ACAACAGTGACCGTTATAGT+TGG + chr5_1:6351684-6351703 None:intergenic 40.0%
!! GATTTCAGGAAAAAGCACTC+TGG - chr5_1:6351872-6351891 Msa0713880:intron 40.0%
ATCGTTCAGAGAACATACGA+AGG - chr5_1:6352003-6352022 Msa0713880:intron 40.0%
TCAGAGAACATACGAAGGAT+TGG - chr5_1:6352008-6352027 Msa0713880:intron 40.0%
AGGTGAAGTAGCTAAACTCT+TGG - chr5_1:6352113-6352132 Msa0713880:intron 40.0%
! GCATCTCTATCCTTTTGGTA+TGG + chr5_1:6352177-6352196 None:intergenic 40.0%
! TGCAAGCATCTCTATCCTTT+TGG + chr5_1:6352182-6352201 None:intergenic 40.0%
AAAAGGATAGAGATGCTTGC+AGG - chr5_1:6352181-6352200 Msa0713880:intron 40.0%
AAAGGATAGAGATGCTTGCA+GGG - chr5_1:6352182-6352201 Msa0713880:intron 40.0%
! GCCCAAAGGAGATTTTATTG+AGG - chr5_1:6352212-6352231 Msa0713880:intron 40.0%
GACAAACTACCTGCGAAATT+TGG + chr5_1:6352260-6352279 None:intergenic 40.0%
CAAGCTTGTATAGTCCCTTT+GGG + chr5_1:6352423-6352442 None:intergenic 40.0%
TCAAAAAGGGGGTAAACATG+GGG + chr5_1:6353282-6353301 None:intergenic 40.0%
TCAAACCACATATGGGTGTA+GGG + chr5_1:6352607-6352626 None:intergenic 40.0%
ATCAAACCACATATGGGTGT+AGG + chr5_1:6352608-6352627 None:intergenic 40.0%
TCTCATCTCAACAAGTACCA+TGG - chr5_1:6352699-6352718 Msa0713880:intron 40.0%
!! CAATCTTGGTTTGTGTTTGG+TGG + chr5_1:6352743-6352762 None:intergenic 40.0%
!! GGACAATCTTGGTTTGTGTT+TGG + chr5_1:6352746-6352765 None:intergenic 40.0%
CAAAGTATGTGTGAGTTTGG+TGG - chr5_1:6352900-6352919 Msa0713880:CDS 40.0%
AGTTTGGATGAGGTTATGGT+GGG - chr5_1:6352945-6352964 Msa0713880:intron 40.0%
TTTGAAGGAAGACAGTGAAG+GGG - chr5_1:6353004-6353023 Msa0713880:intron 40.0%
!!! GGATGGGAGTTGTTGATTTT+TGG - chr5_1:6353084-6353103 Msa0713880:intron 40.0%
!!! TTTTGGTTGATGAATACGGC+GGG - chr5_1:6353101-6353120 Msa0713880:intron 40.0%
ATGGAAGAGAACGGATGAAA+AGG - chr5_1:6353174-6353193 Msa0713880:intron 40.0%
TGGAAGAGAACGGATGAAAA+GGG - chr5_1:6353175-6353194 Msa0713880:intron 40.0%
TCAAAAAGGGGGTAAACATG+GGG - chr5_1:6353282-6353301 Msa0713880:intron 40.0%
TTTAGCCGACGTTTGATCAA+AGG + chr5_1:6353737-6353756 None:intergenic 40.0%
CTGTATGTCTCCAAGTAATG+CGG - chr5_1:6353825-6353844 Msa0713880:intron 40.0%
!! ACTTTTTCTGCCGCATTACT+TGG + chr5_1:6353838-6353857 None:intergenic 40.0%
ACAATGATTTCCTTGCTGCT+TGG + chr5_1:6353978-6353997 None:intergenic 40.0%
AAATACAATCCGGATGCATG+TGG + chr5_1:6354027-6354046 None:intergenic 40.0%
GCCTTCATTACATCAGTAAG+TGG - chr5_1:6354049-6354068 Msa0713880:intron 40.0%
CATTACATCAGTAAGTGGAG+TGG - chr5_1:6354054-6354073 Msa0713880:intron 40.0%
TGGCAAACAAATGCTTCTTG+TGG - chr5_1:6354173-6354192 Msa0713880:CDS 40.0%
ATCTATCTACAACCAGTCAC+TGG - chr5_1:6354239-6354258 Msa0713880:intron 40.0%
AAAATTCCACCACCACACTG+TGG + chr5_1:6349122-6349141 None:intergenic 45.0%
AAGTTCCGCATTCGATGTTC+TGG + chr5_1:6349145-6349164 None:intergenic 45.0%
CGTCATAGATTCAATGCCGT+TGG - chr5_1:6349197-6349216 Msa0713880:three_prime_UTR 45.0%
! GCATCCATGTATGCTGCTTA+CGG - chr5_1:6349670-6349689 Msa0713880:intron 45.0%
GACCCAGTTATCATCTAGCT+AGG - chr5_1:6350525-6350544 Msa0713880:intron 45.0%
GTTGCTGTCTATCAAGCTTC+TGG + chr5_1:6350617-6350636 None:intergenic 45.0%
!! GCACCATTCTCTGCTAGTTT+TGG - chr5_1:6351016-6351035 Msa0713880:intron 45.0%
TGAGGTGAACCAAATTTCGC+AGG - chr5_1:6352248-6352267 Msa0713880:intron 45.0%
ATCTCTCAAACCCGTGTTGT+AGG - chr5_1:6352357-6352376 Msa0713880:intron 45.0%
ACTAGCTGTGTGTGAAGCAA+GGG - chr5_1:6352396-6352415 Msa0713880:intron 45.0%
GCAAGCTTGTATAGTCCCTT+TGG + chr5_1:6352424-6352443 None:intergenic 45.0%
CAAAAAGGGGGTAAACATGG+GGG + chr5_1:6353283-6353302 None:intergenic 45.0%
AAAGTCCCTACACCCATATG+TGG - chr5_1:6352599-6352618 Msa0713880:intron 45.0%
!! AATGAGAAGCATCAGAGCCA+TGG + chr5_1:6352719-6352738 None:intergenic 45.0%
TAGTGAATGGGGAGACAACA+CGG + chr5_1:6352846-6352865 None:intergenic 45.0%
TTGCCGCAAGTGTAGTGAAT+GGG + chr5_1:6352858-6352877 None:intergenic 45.0%
TTTGCCGCAAGTGTAGTGAA+TGG + chr5_1:6352859-6352878 None:intergenic 45.0%
ACTACACTTGCGGCAAACTA+TGG - chr5_1:6352862-6352881 Msa0713880:CDS 45.0%
CTACACTTGCGGCAAACTAT+GGG - chr5_1:6352863-6352882 Msa0713880:CDS 45.0%
TACACTTGCGGCAAACTATG+GGG - chr5_1:6352864-6352883 Msa0713880:CDS 45.0%
!! TATGTGTGAGTTTGGTGGTG+AGG - chr5_1:6352905-6352924 Msa0713880:CDS 45.0%
! GTGAGGAAGAGAGGGTATAT+GGG - chr5_1:6352922-6352941 Msa0713880:intron 45.0%
! AGAGAGGGTATATGGGAGTT+TGG - chr5_1:6352929-6352948 Msa0713880:intron 45.0%
GGTATATGGGAGTTTGGATG+AGG - chr5_1:6352935-6352954 Msa0713880:intron 45.0%
TGGGAGTTTGGATGAGGTTA+TGG - chr5_1:6352941-6352960 Msa0713880:intron 45.0%
GAGTTTGGATGAGGTTATGG+TGG - chr5_1:6352944-6352963 Msa0713880:intron 45.0%
GGTGACAAGTTAAACCGTTG+CGG - chr5_1:6352972-6352991 Msa0713880:intron 45.0%
GTGACAAGTTAAACCGTTGC+GGG - chr5_1:6352973-6352992 Msa0713880:intron 45.0%
! GATGGAATGTGTGATGACGA+TGG - chr5_1:6353026-6353045 Msa0713880:intron 45.0%
! TGTGATGACGATGGTTGTGT+TGG - chr5_1:6353035-6353054 Msa0713880:intron 45.0%
! GTGATGACGATGGTTGTGTT+GGG - chr5_1:6353036-6353055 Msa0713880:intron 45.0%
!! TTTGGTTGATGAATACGGCG+GGG - chr5_1:6353102-6353121 Msa0713880:intron 45.0%
GCTGTTGTCGGAAACAAAGA+GGG - chr5_1:6353124-6353143 Msa0713880:intron 45.0%
TCGGAAACAAAGAGGGTTCA+AGG - chr5_1:6353131-6353150 Msa0713880:intron 45.0%
AGGGTTCAAGGAAGTCTACT+GGG - chr5_1:6353143-6353162 Msa0713880:intron 45.0%
GGAGGTAGAATGGAAGAGAA+CGG - chr5_1:6353165-6353184 Msa0713880:intron 45.0%
GGAAGAGAACGGATGAAAAG+GGG - chr5_1:6353176-6353195 Msa0713880:intron 45.0%
AATCCAACCACATATGGGTG+TGG - chr5_1:6353248-6353267 Msa0713880:intron 45.0%
ATCCAACCACATATGGGTGT+GGG - chr5_1:6353249-6353268 Msa0713880:intron 45.0%
CAAAAAGGGGGTAAACATGG+GGG - chr5_1:6353283-6353302 Msa0713880:intron 45.0%
TGGAAATCTGCAGGTTTCAC+AGG - chr5_1:6353557-6353576 Msa0713880:intron 45.0%
GGAAATCTGCAGGTTTCACA+GGG - chr5_1:6353558-6353577 Msa0713880:intron 45.0%
TACACACCTCACAGCTACAT+GGG + chr5_1:6353604-6353623 None:intergenic 45.0%
ATACACACCTCACAGCTACA+TGG + chr5_1:6353605-6353624 None:intergenic 45.0%
GTACCCATTCTTCTCCAAGT+AGG + chr5_1:6353866-6353885 None:intergenic 45.0%
CATCAGTAAGTGGAGTGGAT+CGG - chr5_1:6354059-6354078 Msa0713880:intron 45.0%
!! ATGCTGCTATTTCCAGTGAC+TGG + chr5_1:6354254-6354273 None:intergenic 45.0%
CATCGAATGCGGAACTTCGA+CGG - chr5_1:6349148-6349167 Msa0713880:three_prime_UTR 50.0%
TCGACGACGACCTAATCCAA+CGG + chr5_1:6349216-6349235 None:intergenic 50.0%
ATAGGTTGCTTCACAGCCGT+TGG - chr5_1:6349545-6349564 Msa0713880:three_prime_UTR 50.0%
CGGACTGCACTTGAATCCAA+CGG + chr5_1:6349564-6349583 None:intergenic 50.0%
AGGACCGTAAGCAGCATACA+TGG + chr5_1:6349677-6349696 None:intergenic 50.0%
! GTTTGGGTAACTGGTCTCAG+CGG - chr5_1:6350660-6350679 Msa0713880:intron 50.0%
GCTAAACTCTTGGCAGATGC+AGG - chr5_1:6352123-6352142 Msa0713880:intron 50.0%
CTTGCTTCACACACAGCTAG+TGG + chr5_1:6352397-6352416 None:intergenic 50.0%
CACTAGCTGTGTGTGAAGCA+AGG - chr5_1:6352395-6352414 Msa0713880:intron 50.0%
TGTGAAGCAAGGGACCCAAA+GGG - chr5_1:6352406-6352425 Msa0713880:intron 50.0%
! CTATACAAGCTTGCTCGAGC+TGG - chr5_1:6352430-6352449 Msa0713880:intron 50.0%
GCTCGAGCTGGAATGATCAA+AGG - chr5_1:6352442-6352461 Msa0713880:intron 50.0%
CTCCCCATTCACTACACTTG+CGG - chr5_1:6352852-6352871 Msa0713880:CDS 50.0%
TGCCGCAAGTGTAGTGAATG+GGG + chr5_1:6352857-6352876 None:intergenic 50.0%
ACACTTGCGGCAAACTATGG+GGG - chr5_1:6352865-6352884 Msa0713880:CDS 50.0%
!! AGTTTGGTGGTGAGGAAGAG+AGG - chr5_1:6352913-6352932 Msa0713880:intron 50.0%
!! GTTTGGTGGTGAGGAAGAGA+GGG - chr5_1:6352914-6352933 Msa0713880:intron 50.0%
! GGTGAGGAAGAGAGGGTATA+TGG - chr5_1:6352921-6352940 Msa0713880:intron 50.0%
!! GATGAGGTTATGGTGGGTGA+TGG - chr5_1:6352951-6352970 Msa0713880:intron 50.0%
AAGGAAGACAGTGAAGGGGA+TGG - chr5_1:6353008-6353027 Msa0713880:intron 50.0%
ATGACGATGGTTGTGTTGGG+TGG - chr5_1:6353039-6353058 Msa0713880:intron 50.0%
TGGAAGGTTGTTGTGGTGGT+GGG - chr5_1:6353062-6353081 Msa0713880:intron 50.0%
GGCTGTTGTCGGAAACAAAG+AGG - chr5_1:6353123-6353142 Msa0713880:intron 50.0%
GAGGGTTCAAGGAAGTCTAC+TGG - chr5_1:6353142-6353161 Msa0713880:intron 50.0%
GGGTTCAAGGAAGTCTACTG+GGG - chr5_1:6353144-6353163 Msa0713880:intron 50.0%
TTCAAGGAAGTCTACTGGGG+AGG - chr5_1:6353147-6353166 Msa0713880:intron 50.0%
AGTCTACTGGGGAGGTAGAA+TGG - chr5_1:6353155-6353174 Msa0713880:intron 50.0%
TCCAACCACATATGGGTGTG+GGG - chr5_1:6353250-6353269 Msa0713880:intron 50.0%
AAAGTCCCCACACCCATATG+TGG + chr5_1:6353258-6353277 None:intergenic 50.0%
!! GCATCGCGGCTTTATTTGTG+TGG - chr5_1:6353401-6353420 Msa0713880:intron 50.0%
CAGCTACATGGGGGTTCATA+AGG + chr5_1:6353593-6353612 None:intergenic 50.0%
ACACACCTCACAGCTACATG+GGG + chr5_1:6353603-6353622 None:intergenic 50.0%
TGGAGAAGAATGGGTACCTG+CGG - chr5_1:6353869-6353888 Msa0713880:intron 50.0%
AACTGCTTCTCCAAGCAGCA+AGG - chr5_1:6353965-6353984 Msa0713880:intron 50.0%
ACTTCGACGGCGGAGAAGTT+AGG - chr5_1:6349161-6349180 Msa0713880:three_prime_UTR 55.0%
TGCTCCTCTTTCGCCGTGAT+CGG + chr5_1:6349254-6349273 None:intergenic 55.0%
!! GGCTGTGTCGTTTGGGTAAC+TGG - chr5_1:6350651-6350670 Msa0713880:intron 55.0%
! GTAACTGGTCTCAGCGGTTC+AGG - chr5_1:6350666-6350685 Msa0713880:intron 55.0%
GGGACACGGGACACATACTT+TGG - chr5_1:6351279-6351298 Msa0713880:CDS 55.0%
AGTCGAAGCTTGCACTCGAG+AGG - chr5_1:6351906-6351925 Msa0713880:intron 55.0%
GTGTGAAGCAAGGGACCCAA+AGG - chr5_1:6352405-6352424 Msa0713880:intron 55.0%
CACTTGCGGCAAACTATGGG+GGG - chr5_1:6352866-6352885 Msa0713880:CDS 55.0%
GGCAAACTATGGGGGGAGTT+TGG - chr5_1:6352873-6352892 Msa0713880:CDS 55.0%
ACGATGGTTGTGTTGGGTGG+TGG - chr5_1:6353042-6353061 Msa0713880:intron 55.0%
!! TGGTTGTGTTGGGTGGTGGA+AGG - chr5_1:6353046-6353065 Msa0713880:intron 55.0%
!! TGGGTGGTGGAAGGTTGTTG+TGG - chr5_1:6353055-6353074 Msa0713880:intron 55.0%
! GTGGTGGAAGGTTGTTGTGG+TGG - chr5_1:6353058-6353077 Msa0713880:intron 55.0%
GTGGAAGGTTGTTGTGGTGG+TGG - chr5_1:6353061-6353080 Msa0713880:intron 55.0%
! GGAAGGTTGTTGTGGTGGTG+GGG - chr5_1:6353063-6353082 Msa0713880:intron 55.0%
!! GTTGTTGTGGTGGTGGGGAT+GGG - chr5_1:6353068-6353087 Msa0713880:intron 55.0%
TCCCCACACCCATATGTGGT+TGG + chr5_1:6353254-6353273 None:intergenic 55.0%
TGAACCCCCATGTAGCTGTG+AGG - chr5_1:6353595-6353614 Msa0713880:intron 55.0%
CACACCTCACAGCTACATGG+GGG + chr5_1:6353602-6353621 None:intergenic 55.0%
GGAGAAGAATGGGTACCTGC+GGG - chr5_1:6353870-6353889 Msa0713880:intron 55.0%
! GACACCGTTCAAGCATCGTC+AGG + chr5_1:6353896-6353915 None:intergenic 55.0%
CCATCCAAGCCACATGCATC+CGG - chr5_1:6354015-6354034 Msa0713880:intron 55.0%
CAATCCGGATGCATGTGGCT+TGG + chr5_1:6354022-6354041 None:intergenic 55.0%
GTAAGTGGAGTGGATCGGTG+AGG - chr5_1:6354064-6354083 Msa0713880:intron 55.0%
!! AGGAAGGAGCTGGTCTTGGT+TGG - chr5_1:6354084-6354103 Msa0713880:CDS 55.0%
! CAAGCACTGCAGCCACAGTG+TGG - chr5_1:6349107-6349126 Msa0713880:three_prime_UTR 60.0%
CGAATGCGGAACTTCGACGG+CGG - chr5_1:6349151-6349170 Msa0713880:three_prime_UTR 60.0%
GAAGCCGATCACGGCGAAAG+AGG - chr5_1:6349247-6349266 Msa0713880:three_prime_UTR 60.0%
TGCAGGGCTCTACTGCCCAA+AGG - chr5_1:6352198-6352217 Msa0713880:intron 60.0%
!! GGTTGTTGTGGTGGTGGGGA+TGG - chr5_1:6353067-6353086 Msa0713880:intron 60.0%
GAATACGGCGGGGCTGTTGT+CGG - chr5_1:6353112-6353131 Msa0713880:intron 60.0%
CGGGCCTGACGATGCTTGAA+CGG - chr5_1:6353889-6353908 Msa0713880:intron 60.0%
! CCGGATGCATGTGGCTTGGA+TGG + chr5_1:6354018-6354037 None:intergenic 60.0%
GTGGAGTGGATCGGTGAGGA+AGG - chr5_1:6354068-6354087 Msa0713880:intron 60.0%
TGGATCGGTGAGGAAGGAGC+TGG - chr5_1:6354074-6354093 Msa0713880:intron 60.0%
! GGTGAGGAAGGAGCTGGTCT+TGG - chr5_1:6354080-6354099 Msa0713880:CDS 60.0%
GCACTGCAGCCACAGTGTGG+TGG - chr5_1:6349110-6349129 Msa0713880:three_prime_UTR 65.0%
CTGCAGCCACAGTGTGGTGG+TGG - chr5_1:6349113-6349132 Msa0713880:three_prime_UTR 65.0%
! TCAAGCATCGTCAGGCCCGC+AGG + chr5_1:6353888-6353907 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6349095 6354383 6349095 ID=Msa0713880;Name=Msa0713880
chr5_1 mRNA 6349095 6354383 6349095 ID=Msa0713880-mRNA-1;Parent=Msa0713880;Name=Msa0713880-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.4|0.66|1|0.2|0.5|6|486|262
chr5_1 exon 6349095 6349682 6349095 ID=Msa0713880-mRNA-1:exon:2687;Parent=Msa0713880-mRNA-1
chr5_1 exon 6351245 6351363 6351245 ID=Msa0713880-mRNA-1:exon:2686;Parent=Msa0713880-mRNA-1
chr5_1 exon 6351449 6351598 6351449 ID=Msa0713880-mRNA-1:exon:2685;Parent=Msa0713880-mRNA-1
chr5_1 exon 6352791 6352931 6352791 ID=Msa0713880-mRNA-1:exon:2684;Parent=Msa0713880-mRNA-1
chr5_1 exon 6354080 6354253 6354080 ID=Msa0713880-mRNA-1:exon:2683;Parent=Msa0713880-mRNA-1
chr5_1 exon 6354281 6354383 6354281 ID=Msa0713880-mRNA-1:exon:2682;Parent=Msa0713880-mRNA-1
chr5_1 CDS 6354281 6354383 6354281 ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1 CDS 6354080 6354253 6354080 ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1 CDS 6352791 6352931 6352791 ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1 CDS 6351449 6351598 6351449 ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1 CDS 6351245 6351363 6351245 ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1 CDS 6349581 6349682 6349581 ID=Msa0713880-mRNA-1:cds;Parent=Msa0713880-mRNA-1
chr5_1 three_prime_UTR 6349095 6349580 6349095 ID=Msa0713880-mRNA-1:three_prime_utr;Parent=Msa0713880-mRNA-1
Gene Sequence

>Msa0713880

ATGTGTTTCGTACAAGCACTGCAGCCACAGTGTGGTGGTGGAATTTTCCAGAACATCGAATGCGGAACTTCGACGGCGGAGAAGTTAGGATTTGTTAACTTCCGTCGTCGTCGAAGAAGTTTGTTGAAGCCGATCACGGCGAAAGAGGAGCATGAATCGTTTATTGTTGATGACGGTAACAGAATTCCGAAATACAGGGGAATTTCTGTGAATAAACGGAACTGTGTTAAAAATGAACCTGATTCATCTTTCATTGATTATTCTTCTGCATTTTCTGGTAAAAATCTCAGCAATTTGACAACAAATGGCAATTCAACAAACATTTTGTGGCATGAATGTTCAATCCAGAAGCTTGATAGACAGCAACTACTTCAACAAAAAGGCTGTGTCGTTTGGGTAACTGGTCTCAGCGGTTCAGGAAAAAGCACTCTGGCATGCGCTTTGAGTCGAAGCTTGCACTCGAGAGGAAAGTTAACATATATCCTTGATGGTGATAATATTCGACATGGTCTAAACCGTGATCTTAGTTTTAGAGCAGAAGATCGTTCAGAGAACATACGAAGGATTGGTGAAGTAGCTAAACTCTTGGCAGATGCAGGAGTTATTTGCATCACCAGTTTGATATCACCATACCAAAAGGATAGAGATGCTTGCAGGGCTCTACTGCCCAAAGGAGATTTTATTGAGATAGTATTGCATCAGCAAAAAGAAAGTGACTGTATGTCTCCAAGTAATGCGGCAGAAAAAGTAATATCCTACTTGGAGAAGAATGGGTACCTGCGGGCCTGA
Protein sequence

>Msa0713880

MCFVQALQPQCGGGIFQNIECGTSTAEKLGFVNFRRRRRSLLKPITAKEEHESFIVDDGNRIPKYRGISVNKRNCVKNEPDSSFIDYSSAFSGKNLSNLTTNGNSTNILWHECSIQKLDRQQLLQQKGCVVWVTGLSGSGKSTLACALSRSLHSRGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGEVAKLLADAGVICITSLISPYQKDRDACRALLPKGDFIEIVLHQQKESDCMSPSNAAEKVISYLEKNGYLRA*