AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001960 MtrunA17_Chr1g0152131 92.621 393 4 2 1 369 1 392 0.0 727
Msa0001960 MtrunA17_Chr8g0365941 37.821 312 147 11 93 367 114 415 8.27e-42 152
Msa0001960 MtrunA17_Chr5g0421111 57.746 142 51 4 192 329 297 433 2.41e-41 152
Msa0001960 MtrunA17_Chr7g0234761 37.584 298 140 8 75 329 91 385 4.97e-40 148
Msa0001960 MtrunA17_Chr3g0144641 59.055 127 45 2 233 352 163 289 5.40e-39 143
Msa0001960 MtrunA17_Chr8g0339091 39.298 285 122 13 88 328 81 358 9.83e-39 144
Msa0001960 MtrunA17_Chr8g0363921 43.868 212 95 7 171 365 53 257 2.50e-38 138
Msa0001960 MtrunA17_Chr5g0415291 52.113 142 60 3 209 350 65 198 4.06e-35 129
Msa0001960 MtrunA17_Chr3g0131771 70.930 86 25 0 243 328 129 214 6.91e-35 130
Msa0001960 MtrunA17_Chr8g0385911 77.778 72 16 0 258 329 142 213 7.33e-34 127
Msa0001960 MtrunA17_Chr4g0035101 80.000 75 15 0 255 329 137 211 1.14e-33 127
Msa0001960 MtrunA17_Chr1g0174161 67.500 80 26 0 250 329 149 228 6.78e-31 120
Msa0001960 MtrunA17_Chr7g0258161 68.750 80 25 0 250 329 162 241 8.61e-31 120
Msa0001960 MtrunA17_Chr6g0484271 62.500 88 32 1 241 328 136 222 7.36e-29 113
Msa0001960 MtrunA17_Chr4g0074161 56.122 98 40 3 244 340 189 284 6.93e-24 102
Msa0001960 MtrunA17_Chr1g0190731 66.197 71 22 2 260 329 192 261 1.47e-21 94.7
Msa0001960 MtrunA17_Chr1g0184841 49.091 110 53 3 232 340 91 198 1.23e-16 79.3
Msa0001960 MtrunA17_Chr2g0329041 47.059 85 37 1 247 323 310 394 2.01e-16 80.1
Msa0001960 MtrunA17_Chr4g0014771 53.333 75 32 1 261 332 118 192 2.31e-16 76.6
Msa0001960 MtrunA17_Chr4g0032951 57.812 64 27 0 261 324 355 418 3.93e-16 79.3
Msa0001960 MtrunA17_Chr1g0174271 52.239 67 32 0 261 327 298 364 1.23e-15 77.8
Msa0001960 MtrunA17_Chr1g0182791 46.341 82 37 2 263 338 319 399 1.60e-15 77.8
Msa0001960 MtrunA17_Chr1g0193321 46.667 75 35 2 263 337 464 533 1.77e-15 78.2
Msa0001960 MtrunA17_Chr7g0258181 50.746 67 33 0 261 327 243 309 2.53e-15 76.3
Msa0001960 MtrunA17_Chr3g0095391 36.000 150 81 6 222 367 266 404 8.57e-15 75.5
Msa0001960 MtrunA17_Chr7g0262691 40.179 112 62 3 230 337 218 328 1.97e-14 74.3
Msa0001960 MtrunA17_Chr3g0087771 51.562 64 31 0 261 324 322 385 1.03e-13 72.0
Msa0001960 MtrunA17_Chr1g0153241 45.714 70 37 1 263 332 87 155 2.43e-13 69.7
Msa0001960 MtrunA17_Chr8g0351881 41.250 80 39 1 253 324 300 379 6.94e-13 69.3
Msa0001960 MtrunA17_Chr1g0152651 50.000 66 32 1 261 326 274 338 1.53e-12 68.2
Msa0001960 MtrunA17_Chr3g0134741 50.769 65 31 1 262 326 230 293 9.07e-12 65.5
Msa0001960 MtrunA17_Chr7g0270871 50.943 53 25 1 272 324 213 264 1.06e-11 65.5
Msa0001960 MtrunA17_Chr7g0271251 43.011 93 39 4 263 346 434 521 1.57e-11 65.9
Msa0001960 MtrunA17_Chr7g0231461 48.438 64 32 1 261 324 297 359 2.87e-11 64.7
Msa0001960 MtrunA17_Chr5g0402031 50.820 61 29 1 272 332 116 175 3.84e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001960 AT1G10120.2 38.325 394 155 19 1 369 1 331 1.71e-45 160
Msa0001960 AT1G10120.1 38.325 394 155 19 1 369 1 331 1.71e-45 160
Msa0001960 AT1G68920.1 56.081 148 33 4 238 370 286 416 4.91e-41 150
Msa0001960 AT1G68920.4 56.081 148 33 4 238 370 286 416 4.91e-41 150
Msa0001960 AT1G68920.2 56.081 148 33 4 238 370 286 416 4.91e-41 150
Msa0001960 AT1G68920.3 56.081 148 33 4 238 370 285 415 5.52e-41 150
Msa0001960 AT1G26260.3 67.593 108 29 2 226 328 133 239 1.55e-39 144
Msa0001960 AT1G26260.5 67.593 108 29 2 226 328 162 268 2.85e-39 144
Msa0001960 AT1G26260.4 67.593 108 29 2 226 328 184 290 3.56e-39 144
Msa0001960 AT1G26260.1 67.593 108 29 2 226 328 184 290 3.56e-39 144
Msa0001960 AT1G26260.6 67.593 108 29 2 226 328 184 290 3.56e-39 144
Msa0001960 AT1G26260.2 67.593 108 29 2 226 328 184 290 3.56e-39 144
Msa0001960 AT3G07340.2 64.348 115 35 3 218 328 213 325 3.61e-38 142
Msa0001960 AT3G07340.1 64.348 115 35 3 218 328 213 325 5.75e-38 142
Msa0001960 AT3G23690.1 76.471 85 19 1 245 329 176 259 1.64e-36 136
Msa0001960 AT5G50915.3 49.020 153 59 3 225 367 106 249 6.07e-36 132
Msa0001960 AT5G50915.4 49.020 153 59 3 225 367 106 249 6.07e-36 132
Msa0001960 AT5G50915.1 49.020 153 59 3 225 367 106 249 6.75e-36 132
Msa0001960 AT5G50915.2 49.020 153 59 3 225 367 106 249 6.75e-36 132
Msa0001960 AT1G59640.1 48.980 147 61 3 212 351 94 233 6.85e-36 132
Msa0001960 AT1G59640.2 51.128 133 58 2 212 344 94 219 9.20e-35 131
Msa0001960 AT4G34530.1 46.452 155 68 2 191 330 87 241 9.53e-35 130
Msa0001960 AT5G48560.2 74.699 83 20 1 246 328 287 368 1.22e-34 133
Msa0001960 AT5G48560.1 74.699 83 20 1 246 328 287 368 1.69e-34 133
Msa0001960 AT3G57800.2 37.190 242 113 5 126 329 32 272 4.84e-33 127
Msa0001960 AT4G36540.1 54.098 122 50 3 210 330 94 210 1.09e-32 124
Msa0001960 AT4G36540.2 54.098 122 50 3 210 330 94 210 1.10e-32 124
Msa0001960 AT2G18300.1 50.382 131 47 2 218 330 124 254 3.93e-32 124
Msa0001960 AT2G18300.2 50.382 131 47 2 218 330 124 254 4.12e-32 124
Msa0001960 AT2G18300.3 50.382 131 47 2 218 330 124 254 8.00e-32 123
Msa0001960 AT5G62610.2 47.097 155 69 4 186 328 67 220 2.27e-31 120
Msa0001960 AT5G62610.1 47.097 155 69 4 186 328 67 220 2.27e-31 120
Msa0001960 AT2G42300.4 67.949 78 25 0 252 329 176 253 1.07e-30 118
Msa0001960 AT2G42300.1 67.949 78 25 0 252 329 176 253 2.81e-30 118
Msa0001960 AT1G18400.2 74.286 70 18 0 259 328 143 212 1.32e-29 114
Msa0001960 AT1G18400.1 74.286 70 18 0 259 328 143 212 2.24e-29 114
Msa0001960 AT1G73830.1 72.464 69 19 0 260 328 146 214 3.46e-28 111
Msa0001960 AT1G73830.2 72.464 69 19 0 260 328 146 214 3.57e-28 111
Msa0001960 AT1G25330.1 56.250 96 40 1 257 352 100 193 3.69e-28 110
Msa0001960 AT3G57800.1 31.142 289 113 6 126 329 32 319 1.03e-24 104
Msa0001960 AT2G24260.2 68.571 70 20 2 261 329 35 103 6.75e-23 96.7
Msa0001960 AT4G30980.1 70.000 70 19 2 261 329 130 198 1.04e-22 97.4
Msa0001960 AT4G30980.2 70.000 70 19 2 261 329 178 246 1.58e-22 97.8
Msa0001960 AT5G58010.1 64.198 81 26 3 260 339 98 176 1.92e-22 96.7
Msa0001960 AT2G24260.1 68.571 70 20 2 261 329 138 206 2.54e-22 97.1
Msa0001960 AT2G42300.5 69.388 49 15 0 252 300 176 224 1.96e-17 80.9
Msa0001960 AT2G42300.3 69.388 49 15 0 252 300 176 224 1.96e-17 80.9
Msa0001960 AT2G42300.2 69.388 49 15 0 252 300 176 224 2.24e-17 80.9
Msa0001960 AT2G42280.1 56.250 64 28 0 261 324 279 342 4.38e-16 79.3
Msa0001960 AT4G28815.2 40.000 100 43 3 264 347 71 169 4.82e-16 77.0
Msa0001960 AT1G51140.1 55.385 65 29 0 261 325 304 368 1.44e-15 77.8
Msa0001960 AT4G09180.1 44.211 95 42 2 241 324 153 247 1.50e-15 76.3
Msa0001960 AT1G35460.1 54.545 66 30 0 259 324 179 244 1.90e-15 75.9
Msa0001960 AT4G28815.1 39.796 98 47 3 264 350 147 243 2.38e-15 76.3
Msa0001960 AT4G02590.3 58.537 82 31 3 260 340 82 161 2.54e-15 75.5
Msa0001960 AT4G02590.2 58.537 82 31 3 260 340 145 224 3.08e-15 76.3
Msa0001960 AT4G02590.1 58.537 82 31 3 260 340 145 224 3.08e-15 76.3
Msa0001960 AT2G42280.3 53.968 63 29 0 261 323 279 341 3.88e-15 76.3
Msa0001960 AT1G03040.2 59.259 81 30 3 261 340 139 217 4.00e-15 75.5
Msa0001960 AT1G03040.1 59.259 81 30 3 261 340 144 222 4.91e-15 75.5
Msa0001960 AT1G09530.3 46.667 75 35 2 263 337 339 408 7.37e-15 76.3
Msa0001960 AT1G09530.2 46.667 75 35 2 263 337 339 408 7.37e-15 76.3
Msa0001960 AT1G09530.5 46.667 75 35 2 263 337 339 408 7.37e-15 76.3
Msa0001960 AT1G09530.1 46.667 75 35 2 263 337 339 408 7.37e-15 76.3
Msa0001960 AT1G09530.4 46.667 75 35 2 263 337 339 408 7.37e-15 76.3
Msa0001960 AT1G09530.6 46.667 75 35 2 263 337 339 408 7.37e-15 76.3
Msa0001960 AT1G03040.3 59.259 81 30 3 261 340 144 222 8.69e-15 75.1
Msa0001960 AT2G20180.7 33.333 135 69 3 232 347 178 310 1.18e-14 75.1
Msa0001960 AT2G20180.1 33.333 135 69 3 232 347 178 310 1.18e-14 75.1
Msa0001960 AT2G20180.5 33.333 135 69 3 232 347 178 310 1.18e-14 75.1
Msa0001960 AT2G20180.8 37.838 111 55 3 213 323 243 339 1.29e-14 74.7
Msa0001960 AT2G20180.4 33.333 135 69 3 232 347 249 381 1.39e-14 75.5
Msa0001960 AT2G20180.6 33.333 135 69 3 232 347 249 381 1.39e-14 75.5
Msa0001960 AT2G20180.2 33.333 135 69 3 232 347 249 381 1.39e-14 75.5
Msa0001960 AT2G20180.3 33.333 135 69 3 232 347 249 381 1.39e-14 75.5
Msa0001960 AT4G28800.1 36.585 123 56 5 264 365 252 373 1.61e-13 72.0
Msa0001960 AT4G28790.1 35.294 119 58 3 211 324 229 333 1.73e-13 71.6
Msa0001960 AT4G28800.2 38.983 118 54 6 264 365 264 379 2.30e-13 71.6
Msa0001960 AT4G28790.2 35.897 117 56 3 211 322 229 331 3.25e-13 70.5
Msa0001960 AT4G00050.2 47.143 70 35 2 261 330 105 172 5.58e-12 66.2
Msa0001960 AT5G67110.1 52.459 61 28 1 272 332 98 157 6.99e-12 64.7
Msa0001960 AT4G33880.1 48.485 66 33 1 261 326 266 330 7.76e-12 66.2
Msa0001960 AT2G43140.2 47.761 67 35 0 259 325 229 295 7.81e-12 65.9
Msa0001960 AT4G00050.1 47.143 70 35 2 261 330 207 274 1.20e-11 66.2
Msa0001960 AT4G00050.3 47.143 70 35 2 261 330 207 274 1.28e-11 65.9
Msa0001960 AT4G36930.1 41.772 79 45 1 267 345 197 274 1.37e-11 65.9
Msa0001960 AT2G14760.1 48.485 66 33 1 261 326 237 301 1.52e-11 65.5
Msa0001960 AT2G43140.1 47.761 67 35 0 259 325 132 198 1.98e-11 63.5
Msa0001960 AT2G46970.1 42.254 71 35 2 259 324 216 285 5.28e-11 64.3
Msa0001960 AT2G46970.2 42.254 71 35 2 259 324 185 254 6.02e-11 63.9
Msa0001960 AT2G46970.3 42.254 71 35 2 259 324 194 263 6.97e-11 63.5
Msa0001960 AT1G27740.1 46.970 66 34 1 261 326 167 231 9.61e-11 62.0

Find 146 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACTACCTTTGTTGTTTA+TGG 0.090730 1_1:+3742349 Msa0001960:five_prime_UTR
TACTACCCAATTGGTGAAAT+TGG 0.178979 1_1:+3742373 Msa0001960:five_prime_UTR
TTTCCTGATTGTTCAACTTT+TGG 0.201081 1_1:-3744286 None:intergenic
ATCTTATAACCCTCTTGTTT+TGG 0.236824 1_1:+3743453 Msa0001960:CDS
GTACTTGTATTTGATTCTTT+TGG 0.244214 1_1:+3742481 Msa0001960:five_prime_UTR
TTGAGTCAAGCTCATACTTT+TGG 0.246530 1_1:+3743385 Msa0001960:CDS
TTCTTCTCTTATTAGATAAC+TGG 0.273700 1_1:+3744739 Msa0001960:intron
TCAGAAATGGTTGGTTCCTT+TGG 0.277793 1_1:+3743571 Msa0001960:CDS
GCTTAGAAACAAACCTTGTT+TGG 0.285521 1_1:-3743814 None:intergenic
ATCCAAAGGGGTCAAATTAA+TGG 0.316200 1_1:+3743682 Msa0001960:CDS
TTTAATTAATACCTAACTAT+TGG 0.316951 1_1:+3746297 Msa0001960:three_prime_UTR
TTGCTTCAAGAACTTGTTCC+AGG 0.318899 1_1:+3744553 Msa0001960:CDS
TATTAGTTCTGTATCAAATA+TGG 0.318971 1_1:+3743273 Msa0001960:CDS
CAAGTTTCCTCAGTCATTGC+AGG 0.330648 1_1:+3742451 Msa0001960:five_prime_UTR
GAAATTATGTATAGAGTTGC+AGG 0.336424 1_1:+3746513 Msa0001960:three_prime_UTR
TTGTGTTCAAAATTTGTGTT+TGG 0.337717 1_1:+3746546 Msa0001960:three_prime_UTR
CTTGTTCAATACTCAAATCT+TGG 0.340230 1_1:+3743505 Msa0001960:CDS
GCAGCAGCAGCATCATTTCA+TGG 0.345728 1_1:+3743330 Msa0001960:CDS
AAATGCATATAAATGATTAA+AGG 0.347202 1_1:-3743061 None:intergenic
CACCATTAATTTGACCCCTT+TGG 0.347434 1_1:-3743684 None:intergenic
CAAAATTTGTGTTTGGGGTT+AGG 0.347483 1_1:+3746553 Msa0001960:three_prime_UTR
ATTCCCAAACGCAAGTTTCC+AGG 0.357553 1_1:+3745533 Msa0001960:CDS
AGAGACATAGACATAGAAAA+AGG 0.359398 1_1:+3743144 Msa0001960:five_prime_UTR
CTCCAGTCACGCTTAGGACT+TGG 0.365208 1_1:+3745471 Msa0001960:CDS
CTTGAGCCAATTGCTGAGTC+AGG 0.372677 1_1:+3743084 Msa0001960:five_prime_UTR
AATTCGAAGCGCCAATAGTT+AGG 0.373908 1_1:-3746308 None:intergenic
TGCAAGACTGTGGCTGTTTG+TGG 0.374048 1_1:-3744386 None:intergenic
AATGCATATAAATGATTAAA+GGG 0.377617 1_1:-3743060 None:intergenic
TCCTTTGGCCAACATGGGTC+AGG 0.379373 1_1:+3743586 Msa0001960:CDS
AGTTAAATTGTGCAGTCAAC+AGG 0.381342 1_1:-3746215 None:intergenic
TGGGCTCTAAACCTTTGAAT+TGG 0.383247 1_1:+3746740 Msa0001960:three_prime_UTR
ATTTCATGGCTTCTTCAGCT+TGG 0.391101 1_1:+3743344 Msa0001960:CDS
TTCTTGTCCATCTTCAGAAA+TGG 0.392622 1_1:+3743249 Msa0001960:CDS
TTTCATGGCTTCTTCAGCTT+GGG 0.397346 1_1:+3743345 Msa0001960:CDS
TGTGTTCAAAATTTGTGTTT+GGG 0.398180 1_1:+3746547 Msa0001960:three_prime_UTR
TACCCTGGAAACTTGCGTTT+GGG 0.399150 1_1:-3745536 None:intergenic
GGAATCGGTGGATTTGTTCC+TGG 0.401252 1_1:+3745492 Msa0001960:CDS
AAGTGGAAGTTTCTCAGAAA+TGG 0.401403 1_1:+3743558 Msa0001960:CDS
CTGCAATGACTGAGGAAACT+TGG 0.404304 1_1:-3742450 None:intergenic
TTGTTAGATTCAATATCAAT+TGG 0.426359 1_1:+3746348 Msa0001960:three_prime_UTR
TTACCCTGGAAACTTGCGTT+TGG 0.431578 1_1:-3745537 None:intergenic
TTTGGCCAACATGGGTCAGG+TGG 0.434581 1_1:+3743589 Msa0001960:CDS
TATCAATAGTTATAAGAAGA+AGG 0.439102 1_1:-3742564 None:intergenic
TGGCTCAAGAGATATCTTGC+AGG 0.441362 1_1:-3743016 None:intergenic
AAGGGTATTTATTGATATGA+AGG 0.443214 1_1:+3746432 Msa0001960:three_prime_UTR
GACTGTGGACAAAGGAGAAA+AGG 0.443873 1_1:+3742654 Msa0001960:five_prime_UTR
AACAATCCTGACTCAGCAAT+TGG 0.444131 1_1:-3743090 None:intergenic
TTCCAAGTCCTAAGCGTGAC+TGG 0.444135 1_1:-3745473 None:intergenic
ATGTATAGAGTTGCAGGACT+TGG 0.446164 1_1:+3746519 Msa0001960:three_prime_UTR
ATCGCTACCTTGTTGCATCC+TGG 0.450261 1_1:-3744571 None:intergenic
GTTGGTTCCTTTGGCCAACA+TGG 0.452089 1_1:+3743580 Msa0001960:CDS
CAGCCACAGTCTTGCAGAAA+GGG 0.452630 1_1:+3744393 Msa0001960:CDS
GAACATGTAGCTAACACATC+AGG 0.456379 1_1:+3743613 Msa0001960:CDS
ACAGGATCTGCACCTGGTAG+TGG 0.456742 1_1:+3743748 Msa0001960:CDS
CTAATATCCATTTCTGAAGA+TGG 0.462754 1_1:-3743256 None:intergenic
AAACCAAAAGTTGAACAATC+AGG 0.463056 1_1:+3744283 Msa0001960:CDS
ATCCACAAGATTCCTTCCTA+TGG 0.466206 1_1:+3743535 Msa0001960:CDS
GTTTCTACAACAGAAGACTT+TGG 0.470200 1_1:+3746186 Msa0001960:three_prime_UTR
TGTGCAATCACTGCAGCAAC+AGG 0.471611 1_1:+3744795 Msa0001960:CDS
AACTACATCTGAAGAAGTCT+TGG 0.472821 1_1:-3743296 None:intergenic
TATTCAACACACTATAACTC+TGG 0.473092 1_1:-3746154 None:intergenic
TAGATTCTCCAGTCACGCTT+AGG 0.473536 1_1:+3745465 Msa0001960:intron
TTCTTTCTTGAATTAAGAGA+TGG 0.473587 1_1:+3743174 Msa0001960:exon
ATTCACGAGGATGGAGGTAC+AGG 0.478235 1_1:+3743730 Msa0001960:CDS
TGGAAACTTGCGTTTGGGAA+TGG 0.479393 1_1:-3745531 None:intergenic
GTTTATGGTTACTACCCAAT+TGG 0.482901 1_1:+3742364 Msa0001960:five_prime_UTR
TTATAATGCTGTGACGGAAT+TGG 0.483604 1_1:-3743640 None:intergenic
CGCTTAGGACTTGGAATCGG+TGG 0.488486 1_1:+3745480 Msa0001960:CDS
ACAGTTCCCTCCTTTGCCTC+AGG 0.492804 1_1:+3745587 Msa0001960:CDS
ATCACTGCAGCAACAGGTTG+AGG 0.493756 1_1:+3744801 Msa0001960:CDS
CGCAAGTTTCCAGGGTAACA+TGG 0.498356 1_1:+3745542 Msa0001960:CDS
TATAATCACATCAAGGATGC+TGG 0.503047 1_1:+3743658 Msa0001960:CDS
AAAAGATTAGCGAGCGAATG+AGG 0.508531 1_1:+3744530 Msa0001960:CDS
CAAGGATGCTGGAATCCAAA+GGG 0.509335 1_1:+3743669 Msa0001960:CDS
GTTCAATACTCAAATCTTGG+AGG 0.510892 1_1:+3743508 Msa0001960:CDS
AAGATTCCTTCCTATGGAAG+TGG 0.511892 1_1:+3743541 Msa0001960:CDS
TGAGAAACTTCCACTTCCAT+AGG 0.519524 1_1:-3743551 None:intergenic
TTTCTTCTACTTCCACTACC+AGG 0.520640 1_1:-3743760 None:intergenic
ATTTATTGATATGAAGGGCA+TGG 0.524106 1_1:+3746438 Msa0001960:three_prime_UTR
ACAGCCACAGTCTTGCAGAA+AGG 0.526933 1_1:+3744392 Msa0001960:CDS
AACTTGGAAGTGAAAGGGAC+AGG 0.526946 1_1:-3742434 None:intergenic
GGATGAGAGGAGCTTATACC+AGG 0.529199 1_1:-3745510 None:intergenic
ATCATTAAGAACAAGTTGCA+AGG 0.531774 1_1:+3746413 Msa0001960:three_prime_UTR
GAACCATCAGAAATCTTCCT+CGG 0.535882 1_1:-3744244 None:intergenic
GGAAGTTTCTCAGAAATGGT+TGG 0.538496 1_1:+3743562 Msa0001960:CDS
TTGGTTCCTTTGGCCAACAT+GGG 0.538891 1_1:+3743581 Msa0001960:CDS
GATTAGAATGCTGAGGGTGA+TGG 0.542326 1_1:+3744208 Msa0001960:intron
TCTTTAGAAGCATCTCCACT+TGG 0.543899 1_1:-3744328 None:intergenic
ATGCTCTTAACAAGACTGAA+AGG 0.547541 1_1:+3742771 Msa0001960:five_prime_UTR
AGTTTCCAGGGTAACATGGC+TGG 0.548496 1_1:+3745546 Msa0001960:CDS
TGAGGAAACTTGGAAGTGAA+AGG 0.550184 1_1:-3742440 None:intergenic
TCTTTCTTGAATTAAGAGAT+GGG 0.551193 1_1:+3743175 Msa0001960:exon
TTGGCCAACATGGGTCAGGT+GGG 0.552278 1_1:+3743590 Msa0001960:CDS
ACTGTTGAAAGTGAAAGTGT+TGG 0.558922 1_1:-3742524 None:intergenic
CGTCTGAGTGAACTATCGAT+TGG 0.560939 1_1:+3746777 Msa0001960:three_prime_UTR
TTCTTCTTTCAGTCCAAACA+AGG 0.563605 1_1:+3743801 Msa0001960:CDS
AGGGTATTTATTGATATGAA+GGG 0.566466 1_1:+3746433 Msa0001960:three_prime_UTR
ACCTGACCCATGTTGGCCAA+AGG 0.569057 1_1:-3743587 None:intergenic
TTCCCAAACGCAAGTTTCCA+GGG 0.570083 1_1:+3745534 Msa0001960:CDS
TCTCCGAGGAAGATTTCTGA+TGG 0.571010 1_1:+3744241 Msa0001960:CDS
TTTCTTGCTTGTATCAGAGA+GGG 0.571979 1_1:+3742802 Msa0001960:five_prime_UTR
GAGGAAACTTGGAAGTGAAA+GGG 0.572419 1_1:-3742439 None:intergenic
GTGTTCAAAATTTGTGTTTG+GGG 0.576966 1_1:+3746548 Msa0001960:three_prime_UTR
TGGTGAACAATCTCAGATTG+AGG 0.578059 1_1:+3743702 Msa0001960:CDS
GGGAACTGTGTTGATGAACT+AGG 0.579147 1_1:-3745573 None:intergenic
TCACGCTTAGGACTTGGAAT+CGG 0.580584 1_1:+3745477 Msa0001960:CDS
GCATGCCAGCCATGTTACCC+TGG 0.580745 1_1:-3745551 None:intergenic
ACTGTGGACAAAGGAGAAAA+GGG 0.582202 1_1:+3742655 Msa0001960:five_prime_UTR
TAAACAAGGAACAAATAACT+TGG 0.582620 1_1:-3742991 None:intergenic
TCTATACATAATTTCACAGA+AGG 0.586134 1_1:-3746505 None:intergenic
TCAAGGATGCTGGAATCCAA+AGG 0.589904 1_1:+3743668 Msa0001960:CDS
CCTTGATTCTCCAAAACAAG+AGG 0.592951 1_1:-3743463 None:intergenic
AAACTTCCACTTCCATAGGA+AGG 0.598638 1_1:-3743547 None:intergenic
GCTTGACTCAATGAAACAAG+TGG 0.600555 1_1:-3743373 None:intergenic
TTCCATAGGAAGGAATCTTG+TGG 0.606199 1_1:-3743537 None:intergenic
GGGTGGTGAGGAAAATGCAA+TGG 0.606665 1_1:+3743195 Msa0001960:CDS
TGGCCAACATGGGTCAGGTG+GGG 0.608930 1_1:+3743591 Msa0001960:CDS
GAGGACTCTATTCACGAGGA+TGG 0.609630 1_1:+3743721 Msa0001960:CDS
TGCGTTTGGGAATGGATGAG+AGG 0.610999 1_1:-3745523 None:intergenic
CTTGATTCTCCAAAACAAGA+GGG 0.612056 1_1:-3743462 None:intergenic
AGTCTTCTGTTGTAGAAACA+AGG 0.612748 1_1:-3746182 None:intergenic
ACAGCATTATAATCACATCA+AGG 0.612775 1_1:+3743651 Msa0001960:CDS
TCATTAAGAACAAGTTGCAA+GGG 0.618041 1_1:+3746414 Msa0001960:three_prime_UTR
GAGGTTGGATTAGAATGCTG+AGG 0.619937 1_1:+3744201 Msa0001960:intron
TAAGTCTGTTGTGTGGACTG+TGG 0.625504 1_1:+3742639 Msa0001960:five_prime_UTR
GTTCCCCACCTGACCCATGT+TGG 0.625912 1_1:-3743594 None:intergenic
GAATTAAGAGATGGGTGGTG+AGG 0.626693 1_1:+3743183 Msa0001960:exon
ATATCTTGCAGGACTAAACA+AGG 0.628784 1_1:-3743005 None:intergenic
AACATGTAGCTAACACATCA+GGG 0.630115 1_1:+3743614 Msa0001960:CDS
GGAGGTACAGGATCTGCACC+TGG 0.632655 1_1:+3743742 Msa0001960:CDS
GCTAAAGACAACTCTCCAAG+TGG 0.635670 1_1:+3744313 Msa0001960:CDS
GTACCCTTTCTGCAAGACTG+TGG 0.636291 1_1:-3744396 None:intergenic
TCAAAATCCTGCAATGACTG+AGG 0.636610 1_1:-3742458 None:intergenic
AATGCAATGGAGTTTCAACA+TGG 0.644756 1_1:+3743208 Msa0001960:CDS
GACTCTATTCACGAGGATGG+AGG 0.650722 1_1:+3743724 Msa0001960:CDS
AGGTTGGATTAGAATGCTGA+GGG 0.650823 1_1:+3744202 Msa0001960:intron
GAAGGGCATGGAATTACATG+AGG 0.652992 1_1:+3746450 Msa0001960:three_prime_UTR
ATTCATGTGAGAGCTAGAAG+AGG 0.658128 1_1:+3744358 Msa0001960:CDS
TTCTTGAATTAAGAGATGGG+TGG 0.661303 1_1:+3743178 Msa0001960:exon
ATGTGATTATAATGCTGTGA+CGG 0.663370 1_1:-3743646 None:intergenic
GTAGTAACCATAAACAACAA+AGG 0.668529 1_1:-3742356 None:intergenic
ACTTGTTCCAGGATGCAACA+AGG 0.687844 1_1:+3744564 Msa0001960:CDS
GTTGTGTGGACTGTGGACAA+AGG 0.692421 1_1:+3742646 Msa0001960:five_prime_UTR
GATTGAGGACTCTATTCACG+AGG 0.712793 1_1:+3743717 Msa0001960:CDS
AAGGATGCTGGAATCCAAAG+GGG 0.724973 1_1:+3743670 Msa0001960:CDS
ATGGAGTGAAAGATTCTCCG+AGG 0.725092 1_1:+3744227 Msa0001960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGCATATAAATGATTAAA+GGG - chr1_1:3743063-3743082 None:intergenic 15.0%
!! AAATGCATATAAATGATTAA+AGG - chr1_1:3743064-3743083 None:intergenic 15.0%
!! TTTAATTAATACCTAACTAT+TGG + chr1_1:3746297-3746316 Msa0001960:three_prime_UTR 15.0%
!! TATCAATAGTTATAAGAAGA+AGG - chr1_1:3742567-3742586 None:intergenic 20.0%
!!! TATTCTATTTTATGAGAAGA+AGG + chr1_1:3742907-3742926 Msa0001960:five_prime_UTR 20.0%
!!! ATTCTATTTTATGAGAAGAA+GGG + chr1_1:3742908-3742927 Msa0001960:five_prime_UTR 20.0%
!!! TATTAGTTCTGTATCAAATA+TGG + chr1_1:3743273-3743292 Msa0001960:CDS 20.0%
!!! TTAGTTGTTAATTTGTTAGA+GGG + chr1_1:3743897-3743916 Msa0001960:intron 20.0%
!! ATATAAGACATTTCATTCAT+TGG - chr1_1:3744039-3744058 None:intergenic 20.0%
!! TATATCAATGAATCTCATAT+AGG + chr1_1:3744109-3744128 Msa0001960:intron 20.0%
!!! ATTTAATTGTCTTGTTTATG+AGG + chr1_1:3744141-3744160 Msa0001960:intron 20.0%
!!! ATTTGGACATATTTAAGATT+TGG - chr1_1:3745295-3745314 None:intergenic 20.0%
!! AATCATAATTGTGTATTAAC+TGG - chr1_1:3745422-3745441 None:intergenic 20.0%
!! ACTAACAAAAAATACATTCA+AGG + chr1_1:3745950-3745969 Msa0001960:intron 20.0%
!! AACAATGAAAAAAGAGTAAA+TGG - chr1_1:3746076-3746095 None:intergenic 20.0%
!! ACTGAAGTTAAAAAAAATAG+AGG + chr1_1:3746235-3746254 Msa0001960:three_prime_UTR 20.0%
!! CTGAAGTTAAAAAAAATAGA+GGG + chr1_1:3746236-3746255 Msa0001960:three_prime_UTR 20.0%
!!! AAAGGTTTTATTAGTTGTAT+AGG + chr1_1:3746273-3746292 Msa0001960:three_prime_UTR 20.0%
!! TTGTTAGATTCAATATCAAT+TGG + chr1_1:3746348-3746367 Msa0001960:three_prime_UTR 20.0%
!!! TGATAATTTTACCAATTCAA+AGG - chr1_1:3746754-3746773 None:intergenic 20.0%
!!! TATACTACCTTTGTTGTTTA+TGG + chr1_1:3742349-3742368 Msa0001960:five_prime_UTR 25.0%
! AAAAACCAATTTCACCAATT+GGG - chr1_1:3742381-3742400 None:intergenic 25.0%
! TAAAAACCAATTTCACCAAT+TGG - chr1_1:3742382-3742401 None:intergenic 25.0%
!! GTACTTGTATTTGATTCTTT+TGG + chr1_1:3742481-3742500 Msa0001960:five_prime_UTR 25.0%
!!! TTAGATTTTGATTTGATCCT+AGG + chr1_1:3742842-3742861 Msa0001960:five_prime_UTR 25.0%
!!! TAGATTTTGATTTGATCCTA+GGG + chr1_1:3742843-3742862 Msa0001960:five_prime_UTR 25.0%
! TAAACAAGGAACAAATAACT+TGG - chr1_1:3742994-3743013 None:intergenic 25.0%
!!! AAGTGAATTTTGACTAAGTT+TGG - chr1_1:3743039-3743058 None:intergenic 25.0%
! TTCTTTCTTGAATTAAGAGA+TGG + chr1_1:3743174-3743193 Msa0001960:exon 25.0%
! TCTTTCTTGAATTAAGAGAT+GGG + chr1_1:3743175-3743194 Msa0001960:exon 25.0%
! TATATCAATGAATCTTATGC+AGG + chr1_1:3743852-3743871 Msa0001960:intron 25.0%
!!! GTTAGTTGTTAATTTGTTAG+AGG + chr1_1:3743896-3743915 Msa0001960:intron 25.0%
! AAATGTCTTATATATGAGCT+TGG + chr1_1:3744046-3744065 Msa0001960:intron 25.0%
! AAAGAAATGCCTTATATATG+AGG + chr1_1:3744182-3744201 Msa0001960:intron 25.0%
!! AACAGCTTTATAGTATAAGA+TGG - chr1_1:3744438-3744457 None:intergenic 25.0%
! GTTAAGATGATTGTGTTAAA+TGG + chr1_1:3744597-3744616 Msa0001960:intron 25.0%
! GTCGTAACTTATAACTTATT+TGG + chr1_1:3744633-3744652 Msa0001960:intron 25.0%
! TTCTTCTCTTATTAGATAAC+TGG + chr1_1:3744739-3744758 Msa0001960:intron 25.0%
!! TTGATACTTTAAAGATTGCA+AGG - chr1_1:3744840-3744859 None:intergenic 25.0%
!! GCTTCAATTCCATTATATTT+TGG + chr1_1:3745033-3745052 Msa0001960:intron 25.0%
!! TTCCAAAACTTTTATGGAAT+GGG + chr1_1:3745715-3745734 Msa0001960:intron 25.0%
!! ATCTTTTGCTAGTTATTAAG+CGG + chr1_1:3745896-3745915 Msa0001960:intron 25.0%
!! ATTTTTATCCTTGAATGTGT+CGG - chr1_1:3746051-3746070 None:intergenic 25.0%
! AATTTATTTCCATGTTGAAC+AGG + chr1_1:3746121-3746140 Msa0001960:intron 25.0%
! ATTTATTTCCATGTTGAACA+GGG + chr1_1:3746122-3746141 Msa0001960:intron 25.0%
! AAAAAAATAGAGGGAGAAAA+AGG + chr1_1:3746245-3746264 Msa0001960:three_prime_UTR 25.0%
!!! AAGGGTATTTATTGATATGA+AGG + chr1_1:3746432-3746451 Msa0001960:three_prime_UTR 25.0%
!! AGGGTATTTATTGATATGAA+GGG + chr1_1:3746433-3746452 Msa0001960:three_prime_UTR 25.0%
! TCTATACATAATTTCACAGA+AGG - chr1_1:3746508-3746527 None:intergenic 25.0%
! TTGTGTTCAAAATTTGTGTT+TGG + chr1_1:3746546-3746565 Msa0001960:three_prime_UTR 25.0%
! TGTGTTCAAAATTTGTGTTT+GGG + chr1_1:3746547-3746566 Msa0001960:three_prime_UTR 25.0%
!!! TGATGTGTGCATTTTTTTTA+AGG + chr1_1:3746576-3746595 Msa0001960:three_prime_UTR 25.0%
!!! GATGTGTGCATTTTTTTTAA+GGG + chr1_1:3746577-3746596 Msa0001960:three_prime_UTR 25.0%
GTAGTAACCATAAACAACAA+AGG - chr1_1:3742359-3742378 None:intergenic 30.0%
!! TTTTGGTCTTTGTTTCTTCT+TGG + chr1_1:3742498-3742517 Msa0001960:five_prime_UTR 30.0%
!!! AGATTTTTAAGTCTGTTGTG+TGG + chr1_1:3742632-3742651 Msa0001960:five_prime_UTR 30.0%
AGAGACATAGACATAGAAAA+AGG + chr1_1:3743144-3743163 Msa0001960:five_prime_UTR 30.0%
! CTAATATCCATTTCTGAAGA+TGG - chr1_1:3743259-3743278 None:intergenic 30.0%
!! ATCTTATAACCCTCTTGTTT+TGG + chr1_1:3743453-3743472 Msa0001960:CDS 30.0%
CTTGTTCAATACTCAAATCT+TGG + chr1_1:3743505-3743524 Msa0001960:CDS 30.0%
ATGTGATTATAATGCTGTGA+CGG - chr1_1:3743649-3743668 None:intergenic 30.0%
ACAGCATTATAATCACATCA+AGG + chr1_1:3743651-3743670 Msa0001960:CDS 30.0%
!! GTTTGTTTCTAAGCTAAGTT+TGG + chr1_1:3743823-3743842 Msa0001960:intron 30.0%
TTGTATAGGACTTGTATTGT+TGG + chr1_1:3743983-3744002 Msa0001960:intron 30.0%
!!! GTTGGTTTGTTTTGTTTATG+AGG + chr1_1:3744001-3744020 Msa0001960:intron 30.0%
! TTGGATTAGATCAAACTTTG+TGG + chr1_1:3744065-3744084 Msa0001960:intron 30.0%
AAATGCCTTATATATGAGGT+TGG + chr1_1:3744186-3744205 Msa0001960:intron 30.0%
CTAATCCAACCTCATATATA+AGG - chr1_1:3744194-3744213 None:intergenic 30.0%
AAACCAAAAGTTGAACAATC+AGG + chr1_1:3744283-3744302 Msa0001960:CDS 30.0%
! TTTCCTGATTGTTCAACTTT+TGG - chr1_1:3744289-3744308 None:intergenic 30.0%
! TTTATAGTATAAGATGGTGG+TGG - chr1_1:3744432-3744451 None:intergenic 30.0%
! AGCTTTATAGTATAAGATGG+TGG - chr1_1:3744435-3744454 None:intergenic 30.0%
!!! TTCCTTTTTTTGATTTCCCT+TGG - chr1_1:3744923-3744942 None:intergenic 30.0%
CCAGGAAAACCAAAATATAA+TGG - chr1_1:3745045-3745064 None:intergenic 30.0%
!!! CCATTATATTTTGGTTTTCC+TGG + chr1_1:3745042-3745061 Msa0001960:intron 30.0%
TCTTTATACGATAAATAGCC+AGG - chr1_1:3745063-3745082 None:intergenic 30.0%
AAGATCTTCACTTACATCTT+TGG - chr1_1:3745162-3745181 None:intergenic 30.0%
ATATGTCCAAATATCAGTCA+TGG + chr1_1:3745303-3745322 Msa0001960:intron 30.0%
! ATCTTTACTCTTTTTACCTG+AGG - chr1_1:3745606-3745625 None:intergenic 30.0%
!!! CATAAAAGTTTTGGAAGTCA+TGG - chr1_1:3745711-3745730 None:intergenic 30.0%
! CATGACTTCCAAAACTTTTA+TGG + chr1_1:3745709-3745728 Msa0001960:intron 30.0%
! CTTCCAAAACTTTTATGGAA+TGG + chr1_1:3745714-3745733 Msa0001960:intron 30.0%
! ATCCCATTCCATAAAAGTTT+TGG - chr1_1:3745720-3745739 None:intergenic 30.0%
! AAATTGTCAAGTGCTGTATT+GGG - chr1_1:3745748-3745767 None:intergenic 30.0%
AATACAGCACTTGACAATTT+GGG + chr1_1:3745748-3745767 Msa0001960:intron 30.0%
AGACAATGTTACTACAGTAT+CGG + chr1_1:3745840-3745859 Msa0001960:intron 30.0%
ACTAGCAAAAGATACACTTA+AGG - chr1_1:3745889-3745908 None:intergenic 30.0%
TATTCAACACACTATAACTC+TGG - chr1_1:3746157-3746176 None:intergenic 30.0%
AGGGAGAAAAAGGAAAATAA+AGG + chr1_1:3746255-3746274 Msa0001960:three_prime_UTR 30.0%
ATCATTAAGAACAAGTTGCA+AGG + chr1_1:3746413-3746432 Msa0001960:three_prime_UTR 30.0%
TCATTAAGAACAAGTTGCAA+GGG + chr1_1:3746414-3746433 Msa0001960:three_prime_UTR 30.0%
ATTTATTGATATGAAGGGCA+TGG + chr1_1:3746438-3746457 Msa0001960:three_prime_UTR 30.0%
GAAATTATGTATAGAGTTGC+AGG + chr1_1:3746513-3746532 Msa0001960:three_prime_UTR 30.0%
GTGTTCAAAATTTGTGTTTG+GGG + chr1_1:3746548-3746567 Msa0001960:three_prime_UTR 30.0%
!!! GCATTTTTTTTAAGGGTTTC+TGG + chr1_1:3746584-3746603 Msa0001960:three_prime_UTR 30.0%
!!! AAGTGCTGCTTAGAATTTTT+GGG + chr1_1:3746721-3746740 Msa0001960:three_prime_UTR 30.0%
GTTTATGGTTACTACCCAAT+TGG + chr1_1:3742364-3742383 Msa0001960:five_prime_UTR 35.0%
TACTACCCAATTGGTGAAAT+TGG + chr1_1:3742373-3742392 Msa0001960:five_prime_UTR 35.0%
! ACTGTTGAAAGTGAAAGTGT+TGG - chr1_1:3742527-3742546 None:intergenic 35.0%
ATGCTCTTAACAAGACTGAA+AGG + chr1_1:3742771-3742790 Msa0001960:five_prime_UTR 35.0%
! TTTTCTTGCTTGTATCAGAG+AGG + chr1_1:3742801-3742820 Msa0001960:five_prime_UTR 35.0%
TTTCTTGCTTGTATCAGAGA+GGG + chr1_1:3742802-3742821 Msa0001960:five_prime_UTR 35.0%
! TTTGATCCTAGGGTTTTTGA+AGG + chr1_1:3742853-3742872 Msa0001960:five_prime_UTR 35.0%
ATATCTTGCAGGACTAAACA+AGG - chr1_1:3743008-3743027 None:intergenic 35.0%
TTCTTGAATTAAGAGATGGG+TGG + chr1_1:3743178-3743197 Msa0001960:exon 35.0%
AATGCAATGGAGTTTCAACA+TGG + chr1_1:3743208-3743227 Msa0001960:CDS 35.0%
TTCTTGTCCATCTTCAGAAA+TGG + chr1_1:3743249-3743268 Msa0001960:CDS 35.0%
AACTACATCTGAAGAAGTCT+TGG - chr1_1:3743299-3743318 None:intergenic 35.0%
! TTGAGTCAAGCTCATACTTT+TGG + chr1_1:3743385-3743404 Msa0001960:CDS 35.0%
!! TACTTTTGGAGGTTCTTCAA+TGG + chr1_1:3743399-3743418 Msa0001960:CDS 35.0%
CTTGATTCTCCAAAACAAGA+GGG - chr1_1:3743465-3743484 None:intergenic 35.0%
!!! CTCTTGTTTTGGAGAATCAA+GGG + chr1_1:3743464-3743483 Msa0001960:CDS 35.0%
GTTCAATACTCAAATCTTGG+AGG + chr1_1:3743508-3743527 Msa0001960:CDS 35.0%
AAGTGGAAGTTTCTCAGAAA+TGG + chr1_1:3743558-3743577 Msa0001960:CDS 35.0%
AACATGTAGCTAACACATCA+GGG + chr1_1:3743614-3743633 Msa0001960:CDS 35.0%
! TTATAATGCTGTGACGGAAT+TGG - chr1_1:3743643-3743662 None:intergenic 35.0%
TATAATCACATCAAGGATGC+TGG + chr1_1:3743658-3743677 Msa0001960:CDS 35.0%
ATCCAAAGGGGTCAAATTAA+TGG + chr1_1:3743682-3743701 Msa0001960:CDS 35.0%
AGTGGAAGTAGAAGAAAAAG+AGG + chr1_1:3743766-3743785 Msa0001960:CDS 35.0%
TTCTTCTTTCAGTCCAAACA+AGG + chr1_1:3743801-3743820 Msa0001960:CDS 35.0%
GCTTAGAAACAAACCTTGTT+TGG - chr1_1:3743817-3743836 None:intergenic 35.0%
CCTGATTTATCGAACTTCAT+CGG + chr1_1:3743956-3743975 Msa0001960:intron 35.0%
!!! ACTTCTGTTTTTGCTTTTGC+AGG + chr1_1:3744498-3744517 Msa0001960:intron 35.0%
CACCAAGGGAAATCAAAAAA+AGG + chr1_1:3744918-3744937 Msa0001960:intron 35.0%
TCTACATCAAAGTTCAGTTC+CGG - chr1_1:3745128-3745147 None:intergenic 35.0%
AACTGAACTTTGATGTAGAG+CGG + chr1_1:3745129-3745148 Msa0001960:intron 35.0%
ATCATACAGATTTGACTCCT+TGG + chr1_1:3745183-3745202 Msa0001960:intron 35.0%
AAGTGAATAGTTCACTTCCA+AGG - chr1_1:3745203-3745222 None:intergenic 35.0%
TGGAAGTGAACTATTCACTT+TGG + chr1_1:3745203-3745222 Msa0001960:intron 35.0%
AAGTGAACTATTCACTTTGG+AGG + chr1_1:3745206-3745225 Msa0001960:intron 35.0%
AGTGAACTATTCACTTTGGA+GGG + chr1_1:3745207-3745226 Msa0001960:intron 35.0%
TAAGCATATCGTTACATCGA+TGG - chr1_1:3745270-3745289 None:intergenic 35.0%
ATGAGACCATGACTGATATT+TGG - chr1_1:3745312-3745331 None:intergenic 35.0%
AAATATCAGTCATGGTCTCA+TGG + chr1_1:3745311-3745330 Msa0001960:intron 35.0%
TATGTACATGCAGAATGCTT+TGG + chr1_1:3745684-3745703 Msa0001960:intron 35.0%
! CAAATTGTCAAGTGCTGTAT+TGG - chr1_1:3745749-3745768 None:intergenic 35.0%
CAATACAGCACTTGACAATT+TGG + chr1_1:3745747-3745766 Msa0001960:intron 35.0%
GATTCTGCCTATTTACCATT+GGG - chr1_1:3745775-3745794 None:intergenic 35.0%
AGATTCTGCCTATTTACCAT+TGG - chr1_1:3745776-3745795 None:intergenic 35.0%
AGTTATTAAGCGGCTAATAG+AGG + chr1_1:3745906-3745925 Msa0001960:intron 35.0%
CAAATGTGTCTCTCATTAGT+CGG - chr1_1:3745982-3746001 None:intergenic 35.0%
ACTAATGAGAGACACATTTG+AGG + chr1_1:3745982-3746001 Msa0001960:intron 35.0%
AGTCTTCTGTTGTAGAAACA+AGG - chr1_1:3746185-3746204 None:intergenic 35.0%
GTTTCTACAACAGAAGACTT+TGG + chr1_1:3746186-3746205 Msa0001960:three_prime_UTR 35.0%
AGTTAAATTGTGCAGTCAAC+AGG - chr1_1:3746218-3746237 None:intergenic 35.0%
! CAAAATTTGTGTTTGGGGTT+AGG + chr1_1:3746553-3746572 Msa0001960:three_prime_UTR 35.0%
!!! CAAGTGCTGCTTAGAATTTT+TGG + chr1_1:3746720-3746739 Msa0001960:three_prime_UTR 35.0%
GAGGAAACTTGGAAGTGAAA+GGG - chr1_1:3742442-3742461 None:intergenic 40.0%
TGAGGAAACTTGGAAGTGAA+AGG - chr1_1:3742443-3742462 None:intergenic 40.0%
TCAAAATCCTGCAATGACTG+AGG - chr1_1:3742461-3742480 None:intergenic 40.0%
ACTGTGGACAAAGGAGAAAA+GGG + chr1_1:3742655-3742674 Msa0001960:five_prime_UTR 40.0%
TCTTCACCTTCAAAAACCCT+AGG - chr1_1:3742862-3742881 None:intergenic 40.0%
!! AGGGTTTTTGAAGGTGAAGA+AGG + chr1_1:3742862-3742881 Msa0001960:five_prime_UTR 40.0%
!! GTTTTTGAAGGTGAAGAAGG+TGG + chr1_1:3742865-3742884 Msa0001960:five_prime_UTR 40.0%
AACAATCCTGACTCAGCAAT+TGG - chr1_1:3743093-3743112 None:intergenic 40.0%
ATTTCATGGCTTCTTCAGCT+TGG + chr1_1:3743344-3743363 Msa0001960:CDS 40.0%
TTTCATGGCTTCTTCAGCTT+GGG + chr1_1:3743345-3743364 Msa0001960:CDS 40.0%
GCTTGACTCAATGAAACAAG+TGG - chr1_1:3743376-3743395 None:intergenic 40.0%
! AGTCAAGCTCATACTTTTGG+AGG + chr1_1:3743388-3743407 Msa0001960:CDS 40.0%
CCTTGATTCTCCAAAACAAG+AGG - chr1_1:3743466-3743485 None:intergenic 40.0%
!!! CCTCTTGTTTTGGAGAATCA+AGG + chr1_1:3743463-3743482 Msa0001960:CDS 40.0%
ATCCACAAGATTCCTTCCTA+TGG + chr1_1:3743535-3743554 Msa0001960:CDS 40.0%
TTCCATAGGAAGGAATCTTG+TGG - chr1_1:3743540-3743559 None:intergenic 40.0%
AAGATTCCTTCCTATGGAAG+TGG + chr1_1:3743541-3743560 Msa0001960:CDS 40.0%
AAACTTCCACTTCCATAGGA+AGG - chr1_1:3743550-3743569 None:intergenic 40.0%
TGAGAAACTTCCACTTCCAT+AGG - chr1_1:3743554-3743573 None:intergenic 40.0%
GGAAGTTTCTCAGAAATGGT+TGG + chr1_1:3743562-3743581 Msa0001960:CDS 40.0%
! TCAGAAATGGTTGGTTCCTT+TGG + chr1_1:3743571-3743590 Msa0001960:CDS 40.0%
GAACATGTAGCTAACACATC+AGG + chr1_1:3743613-3743632 Msa0001960:CDS 40.0%
! CACCATTAATTTGACCCCTT+TGG - chr1_1:3743687-3743706 None:intergenic 40.0%
TGGTGAACAATCTCAGATTG+AGG + chr1_1:3743702-3743721 Msa0001960:CDS 40.0%
TTTCTTCTACTTCCACTACC+AGG - chr1_1:3743763-3743782 None:intergenic 40.0%
CCGATGAAGTTCGATAAATC+AGG - chr1_1:3743959-3743978 None:intergenic 40.0%
! ACTTCATCGGTGTCTTGTAT+AGG + chr1_1:3743969-3743988 Msa0001960:intron 40.0%
! AGGTTGGATTAGAATGCTGA+GGG + chr1_1:3744202-3744221 Msa0001960:intron 40.0%
GAACCATCAGAAATCTTCCT+CGG - chr1_1:3744247-3744266 None:intergenic 40.0%
!! TCTTTAGAAGCATCTCCACT+TGG - chr1_1:3744331-3744350 None:intergenic 40.0%
ATTCATGTGAGAGCTAGAAG+AGG + chr1_1:3744358-3744377 Msa0001960:CDS 40.0%
AAAAGATTAGCGAGCGAATG+AGG + chr1_1:3744530-3744549 Msa0001960:CDS 40.0%
! TTGCTTCAAGAACTTGTTCC+AGG + chr1_1:3744553-3744572 Msa0001960:CDS 40.0%
CTACATCAAAGTTCAGTTCC+GGG - chr1_1:3745127-3745146 None:intergenic 40.0%
! TTTTTACCTGAGGCAAAGGA+GGG - chr1_1:3745596-3745615 None:intergenic 40.0%
! ACTCTTTTTACCTGAGGCAA+AGG - chr1_1:3745600-3745619 None:intergenic 40.0%
! TTTGGGACCCAATGGTAAAT+AGG + chr1_1:3745765-3745784 Msa0001960:intron 40.0%
TTTATCCTTGAATGTGTCGG+TGG - chr1_1:3746048-3746067 None:intergenic 40.0%
TATTTCCATGTTGAACAGGG+AGG + chr1_1:3746125-3746144 Msa0001960:intron 40.0%
! AATTCGAAGCGCCAATAGTT+AGG - chr1_1:3746311-3746330 None:intergenic 40.0%
ATGTATAGAGTTGCAGGACT+TGG + chr1_1:3746519-3746538 Msa0001960:three_prime_UTR 40.0%
!! TGGGCTCTAAACCTTTGAAT+TGG + chr1_1:3746740-3746759 Msa0001960:three_prime_UTR 40.0%
AACTTGGAAGTGAAAGGGAC+AGG - chr1_1:3742437-3742456 None:intergenic 45.0%
CTGCAATGACTGAGGAAACT+TGG - chr1_1:3742453-3742472 None:intergenic 45.0%
CAAGTTTCCTCAGTCATTGC+AGG + chr1_1:3742451-3742470 Msa0001960:five_prime_UTR 45.0%
! TAAGTCTGTTGTGTGGACTG+TGG + chr1_1:3742639-3742658 Msa0001960:five_prime_UTR 45.0%
GACTGTGGACAAAGGAGAAA+AGG + chr1_1:3742654-3742673 Msa0001960:five_prime_UTR 45.0%
TGGCTCAAGAGATATCTTGC+AGG - chr1_1:3743019-3743038 None:intergenic 45.0%
GAATTAAGAGATGGGTGGTG+AGG + chr1_1:3743183-3743202 Msa0001960:exon 45.0%
TTGGTTCCTTTGGCCAACAT+GGG + chr1_1:3743581-3743600 Msa0001960:CDS 45.0%
TCAAGGATGCTGGAATCCAA+AGG + chr1_1:3743668-3743687 Msa0001960:CDS 45.0%
CAAGGATGCTGGAATCCAAA+GGG + chr1_1:3743669-3743688 Msa0001960:CDS 45.0%
AAGGATGCTGGAATCCAAAG+GGG + chr1_1:3743670-3743689 Msa0001960:CDS 45.0%
GATTGAGGACTCTATTCACG+AGG + chr1_1:3743717-3743736 Msa0001960:CDS 45.0%
! GAGGTTGGATTAGAATGCTG+AGG + chr1_1:3744201-3744220 Msa0001960:intron 45.0%
GATTAGAATGCTGAGGGTGA+TGG + chr1_1:3744208-3744227 Msa0001960:intron 45.0%
ATGGAGTGAAAGATTCTCCG+AGG + chr1_1:3744227-3744246 Msa0001960:CDS 45.0%
TCTCCGAGGAAGATTTCTGA+TGG + chr1_1:3744241-3744260 Msa0001960:CDS 45.0%
GCTAAAGACAACTCTCCAAG+TGG + chr1_1:3744313-3744332 Msa0001960:CDS 45.0%
ACTTGTTCCAGGATGCAACA+AGG + chr1_1:3744564-3744583 Msa0001960:CDS 45.0%
GATGCAACAAGGTAGCGATT+TGG + chr1_1:3744575-3744594 Msa0001960:intron 45.0%
TGTGCACATGCTTAACACCA+AGG + chr1_1:3744903-3744922 Msa0001960:intron 45.0%
GTGCACATGCTTAACACCAA+GGG + chr1_1:3744904-3744923 Msa0001960:intron 45.0%
AAAGTTCAGTTCCGGGTTCA+CGG - chr1_1:3745120-3745139 None:intergenic 45.0%
TAGATTCTCCAGTCACGCTT+AGG + chr1_1:3745465-3745484 Msa0001960:intron 45.0%
TCACGCTTAGGACTTGGAAT+CGG + chr1_1:3745477-3745496 Msa0001960:CDS 45.0%
TGGAAACTTGCGTTTGGGAA+TGG - chr1_1:3745534-3745553 None:intergenic 45.0%
ATTCCCAAACGCAAGTTTCC+AGG + chr1_1:3745533-3745552 Msa0001960:CDS 45.0%
TTCCCAAACGCAAGTTTCCA+GGG + chr1_1:3745534-3745553 Msa0001960:CDS 45.0%
TACCCTGGAAACTTGCGTTT+GGG - chr1_1:3745539-3745558 None:intergenic 45.0%
TTACCCTGGAAACTTGCGTT+TGG - chr1_1:3745540-3745559 None:intergenic 45.0%
! GGGAACTGTGTTGATGAACT+AGG - chr1_1:3745576-3745595 None:intergenic 45.0%
! CTTTTTACCTGAGGCAAAGG+AGG - chr1_1:3745597-3745616 None:intergenic 45.0%
! CTTGACAATTTGGGACCCAA+TGG + chr1_1:3745757-3745776 Msa0001960:intron 45.0%
TTCAACCTCCCTGTTCAACA+TGG - chr1_1:3746133-3746152 None:intergenic 45.0%
! GAAGGGCATGGAATTACATG+AGG + chr1_1:3746450-3746469 Msa0001960:three_prime_UTR 45.0%
! GTTGTGTGGACTGTGGACAA+AGG + chr1_1:3742646-3742665 Msa0001960:five_prime_UTR 50.0%
CTTGAGCCAATTGCTGAGTC+AGG + chr1_1:3743084-3743103 Msa0001960:five_prime_UTR 50.0%
GGGTGGTGAGGAAAATGCAA+TGG + chr1_1:3743195-3743214 Msa0001960:CDS 50.0%
GCAGCAGCAGCATCATTTCA+TGG + chr1_1:3743330-3743349 Msa0001960:CDS 50.0%
! GTTGGTTCCTTTGGCCAACA+TGG + chr1_1:3743580-3743599 Msa0001960:CDS 50.0%
GAGGACTCTATTCACGAGGA+TGG + chr1_1:3743721-3743740 Msa0001960:CDS 50.0%
GACTCTATTCACGAGGATGG+AGG + chr1_1:3743724-3743743 Msa0001960:CDS 50.0%
! ATTCACGAGGATGGAGGTAC+AGG + chr1_1:3743730-3743749 Msa0001960:CDS 50.0%
TGCAAGACTGTGGCTGTTTG+TGG - chr1_1:3744389-3744408 None:intergenic 50.0%
ACAGCCACAGTCTTGCAGAA+AGG + chr1_1:3744392-3744411 Msa0001960:CDS 50.0%
CAGCCACAGTCTTGCAGAAA+GGG + chr1_1:3744393-3744412 Msa0001960:CDS 50.0%
GTACCCTTTCTGCAAGACTG+TGG - chr1_1:3744399-3744418 None:intergenic 50.0%
ATCGCTACCTTGTTGCATCC+TGG - chr1_1:3744574-3744593 None:intergenic 50.0%
TGTGCAATCACTGCAGCAAC+AGG + chr1_1:3744795-3744814 Msa0001960:CDS 50.0%
ATCACTGCAGCAACAGGTTG+AGG + chr1_1:3744801-3744820 Msa0001960:CDS 50.0%
TTCCAAGTCCTAAGCGTGAC+TGG - chr1_1:3745476-3745495 None:intergenic 50.0%
! GGAATCGGTGGATTTGTTCC+TGG + chr1_1:3745492-3745511 Msa0001960:CDS 50.0%
GGATGAGAGGAGCTTATACC+AGG - chr1_1:3745513-3745532 None:intergenic 50.0%
TGCGTTTGGGAATGGATGAG+AGG - chr1_1:3745526-3745545 None:intergenic 50.0%
CGCAAGTTTCCAGGGTAACA+TGG + chr1_1:3745542-3745561 Msa0001960:CDS 50.0%
AGTTTCCAGGGTAACATGGC+TGG + chr1_1:3745546-3745565 Msa0001960:CDS 50.0%
CGATACCACCGACACATTCA+AGG + chr1_1:3746040-3746059 Msa0001960:intron 50.0%
TCCTTTGGCCAACATGGGTC+AGG + chr1_1:3743586-3743605 Msa0001960:CDS 55.0%
ACCTGACCCATGTTGGCCAA+AGG - chr1_1:3743590-3743609 None:intergenic 55.0%
TTTGGCCAACATGGGTCAGG+TGG + chr1_1:3743589-3743608 Msa0001960:CDS 55.0%
TTGGCCAACATGGGTCAGGT+GGG + chr1_1:3743590-3743609 Msa0001960:CDS 55.0%
ACAGGATCTGCACCTGGTAG+TGG + chr1_1:3743748-3743767 Msa0001960:CDS 55.0%
GAAACTTGCCACCGTGAACC+CGG + chr1_1:3745106-3745125 Msa0001960:intron 55.0%
CTCCAGTCACGCTTAGGACT+TGG + chr1_1:3745471-3745490 Msa0001960:CDS 55.0%
CGCTTAGGACTTGGAATCGG+TGG + chr1_1:3745480-3745499 Msa0001960:CDS 55.0%
ACAGTTCCCTCCTTTGCCTC+AGG + chr1_1:3745587-3745606 Msa0001960:CDS 55.0%
TGGCCAACATGGGTCAGGTG+GGG + chr1_1:3743591-3743610 Msa0001960:CDS 60.0%
GTTCCCCACCTGACCCATGT+TGG - chr1_1:3743597-3743616 None:intergenic 60.0%
! GGAGGTACAGGATCTGCACC+TGG + chr1_1:3743742-3743761 Msa0001960:CDS 60.0%
GTTCAGTTCCGGGTTCACGG+TGG - chr1_1:3745117-3745136 None:intergenic 60.0%
GCATGCCAGCCATGTTACCC+TGG - chr1_1:3745554-3745573 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3742255 3746798 3742255 ID=Msa0001960;Name=Msa0001960
chr1_1 mRNA 3742255 3746798 3742255 ID=Msa0001960-mRNA-1;Parent=Msa0001960;Name=Msa0001960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=938|0.6|1|1|1|1|6|647|371
chr1_1 exon 3742255 3743822 3742255 ID=Msa0001960-mRNA-1:exon:1067;Parent=Msa0001960-mRNA-1
chr1_1 exon 3744214 3744414 3744214 ID=Msa0001960-mRNA-1:exon:1068;Parent=Msa0001960-mRNA-1
chr1_1 exon 3744520 3744585 3744520 ID=Msa0001960-mRNA-1:exon:1069;Parent=Msa0001960-mRNA-1
chr1_1 exon 3744754 3744822 3744754 ID=Msa0001960-mRNA-1:exon:1070;Parent=Msa0001960-mRNA-1
chr1_1 exon 3745468 3745608 3745468 ID=Msa0001960-mRNA-1:exon:1071;Parent=Msa0001960-mRNA-1
chr1_1 exon 3746143 3746798 3746143 ID=Msa0001960-mRNA-1:exon:1072;Parent=Msa0001960-mRNA-1
chr1_1 five_prime_UTR 3742255 3743192 3742255 ID=Msa0001960-mRNA-1:five_prime_utr;Parent=Msa0001960-mRNA-1
chr1_1 CDS 3743193 3743822 3743193 ID=Msa0001960-mRNA-1:cds;Parent=Msa0001960-mRNA-1
chr1_1 CDS 3744214 3744414 3744214 ID=Msa0001960-mRNA-1:cds;Parent=Msa0001960-mRNA-1
chr1_1 CDS 3744520 3744585 3744520 ID=Msa0001960-mRNA-1:cds;Parent=Msa0001960-mRNA-1
chr1_1 CDS 3744754 3744822 3744754 ID=Msa0001960-mRNA-1:cds;Parent=Msa0001960-mRNA-1
chr1_1 CDS 3745468 3745608 3745468 ID=Msa0001960-mRNA-1:cds;Parent=Msa0001960-mRNA-1
chr1_1 CDS 3746143 3746151 3746143 ID=Msa0001960-mRNA-1:cds;Parent=Msa0001960-mRNA-1
chr1_1 three_prime_UTR 3746152 3746798 3746152 ID=Msa0001960-mRNA-1:three_prime_utr;Parent=Msa0001960-mRNA-1
Gene Sequence

>Msa0001960

ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATTAGTTCTGTATCAAATATGGCCAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCGTCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCACGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTTCTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCGAGGAAGATTTCTGATGGTTCAAAAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGAAAGCAAGCTAAAGACAACTCTCCAAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAACAGCCACAGTCTTGCAGAAAGGGTCAGAAGAGAAAAGATTAGCGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGATTCTCCAGTCACGCTTAGGACTTGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCAAACGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGGGAGGTTGA
Protein sequence

>Msa0001960

MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMAKTSSDVVNHHQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSRRKRGLDQNSSFSPNKNAEGDGVKDSPRKISDGSKEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEILQSRLGLGIGGFVPGISSSHPFPNASFQGNMAGMPSSSTQFPPLPQGG*