Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716660 | XP_003612044.2 | 98.653 | 297 | 4 | 0 | 1 | 297 | 179 | 475 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716660 | sp|Q9ZPV9|SY112_ARATH | 59.609 | 307 | 111 | 4 | 1 | 297 | 1 | 304 | 1.56e-128 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716660 | G7KEY1 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084380 | Msa0716660 | 0.800783 | 1.225518e-48 | -8.615850e-47 |
| Msa0625720 | Msa0716660 | 0.803966 | 2.707908e-49 | -8.615850e-47 |
| Msa0663390 | Msa0716660 | 0.800716 | 1.264673e-48 | -8.615850e-47 |
| Msa0716660 | Msa0731940 | 0.812696 | 3.723480e-51 | -8.615850e-47 |
| Msa0716660 | Msa0810220 | 0.800381 | 1.480477e-48 | -8.615850e-47 |
| Msa0716660 | Msa0964310 | 0.808249 | 3.398414e-50 | -8.615850e-47 |
| Msa0716660 | Msa1035480 | 0.820108 | 8.164277e-53 | -8.615850e-47 |
| Msa0716660 | Msa1193290 | 0.808049 | 3.748917e-50 | -8.615850e-47 |
| Msa0716660 | Msa1353980 | 0.802033 | 6.796675e-49 | -8.615850e-47 |
| Msa0716660 | Msa1466540 | 0.816768 | 4.664147e-52 | -8.615850e-47 |
| Msa0529890 | Msa0716660 | 0.803424 | 3.509137e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716660 | MtrunA17_Chr5g0404401 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 600 |
| Msa0716660 | MtrunA17_Chr5g0398891 | 45.667 | 300 | 134 | 7 | 1 | 276 | 1 | 295 | 3.88e-81 | 248 |
| Msa0716660 | MtrunA17_Chr4g0048121 | 44.097 | 288 | 144 | 5 | 1 | 279 | 1 | 280 | 4.16e-74 | 229 |
| Msa0716660 | MtrunA17_Chr8g0370611 | 93.846 | 130 | 7 | 1 | 1 | 129 | 1 | 130 | 5.63e-74 | 223 |
| Msa0716660 | MtrunA17_Chr2g0281201 | 42.460 | 252 | 135 | 3 | 55 | 297 | 1 | 251 | 1.43e-64 | 203 |
| Msa0716660 | MtrunA17_Chr1g0177121 | 40.210 | 286 | 159 | 4 | 1 | 276 | 1 | 284 | 1.09e-63 | 202 |
| Msa0716660 | MtrunA17_Chr1g0177131 | 42.000 | 250 | 133 | 3 | 40 | 279 | 44 | 291 | 3.41e-62 | 200 |
| Msa0716660 | MtrunA17_Chr7g0267551 | 39.370 | 254 | 142 | 4 | 35 | 279 | 24 | 274 | 2.86e-56 | 183 |
| Msa0716660 | MtrunA17_Chr2g0322801 | 35.439 | 285 | 172 | 4 | 1 | 276 | 1 | 282 | 2.87e-55 | 181 |
| Msa0716660 | MtrunA17_Chr6g0461261 | 33.916 | 286 | 170 | 5 | 1 | 276 | 1 | 277 | 1.91e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716660 | AT2G18260.2 | 59.609 | 307 | 111 | 4 | 1 | 297 | 1 | 304 | 1.58e-129 | 370 |
| Msa0716660 | AT2G18260.1 | 59.609 | 307 | 111 | 4 | 1 | 297 | 1 | 304 | 1.58e-129 | 370 |
| Msa0716660 | AT1G08560.1 | 42.069 | 290 | 149 | 4 | 1 | 276 | 1 | 285 | 1.54e-73 | 228 |
| Msa0716660 | AT1G61290.1 | 40.461 | 304 | 163 | 5 | 1 | 295 | 1 | 295 | 2.38e-71 | 223 |
| Msa0716660 | AT1G61290.2 | 40.461 | 304 | 163 | 5 | 1 | 295 | 1 | 295 | 2.38e-71 | 223 |
| Msa0716660 | AT4G03330.1 | 42.807 | 285 | 148 | 4 | 1 | 276 | 1 | 279 | 1.65e-69 | 218 |
| Msa0716660 | AT3G11820.2 | 43.320 | 247 | 128 | 3 | 40 | 276 | 12 | 256 | 1.63e-62 | 200 |
| Msa0716660 | AT3G11820.1 | 43.320 | 247 | 128 | 3 | 40 | 276 | 43 | 287 | 5.06e-62 | 200 |
| Msa0716660 | AT1G11250.1 | 39.446 | 289 | 150 | 6 | 1 | 279 | 1 | 274 | 1.24e-61 | 197 |
| Msa0716660 | AT3G52400.1 | 37.113 | 291 | 169 | 4 | 1 | 279 | 1 | 289 | 8.70e-54 | 179 |
| Msa0716660 | AT3G03800.2 | 35.249 | 261 | 156 | 5 | 27 | 276 | 20 | 278 | 4.70e-45 | 155 |
| Msa0716660 | AT3G03800.1 | 35.249 | 261 | 156 | 5 | 27 | 276 | 20 | 278 | 4.70e-45 | 155 |
| Msa0716660 | AT5G08080.1 | 36.491 | 285 | 164 | 7 | 1 | 276 | 1 | 277 | 1.35e-40 | 143 |
| Msa0716660 | AT5G08080.4 | 36.491 | 285 | 164 | 7 | 1 | 276 | 1 | 277 | 1.35e-40 | 143 |
| Msa0716660 | AT5G08080.3 | 35.811 | 296 | 162 | 9 | 1 | 276 | 1 | 288 | 1.04e-37 | 136 |
| Msa0716660 | AT5G08080.5 | 36.898 | 187 | 110 | 5 | 1 | 187 | 1 | 179 | 3.10e-20 | 87.4 |
| Msa0716660 | AT5G08080.2 | 36.898 | 187 | 110 | 5 | 1 | 187 | 1 | 179 | 3.10e-20 | 87.4 |
Find 64 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATTGCTTCAACTTCT+TGG | 0.178941 | 5_1:-10155653 | None:intergenic |
| GTTATGGAGAAGATGATATC+AGG | 0.225452 | 5_1:+10156062 | Msa0716660:CDS |
| TCCTGTTCCTCTTCTTGATC+TGG | 0.285655 | 5_1:-10156316 | None:intergenic |
| TGGGAAAACAGATGCTGATA+TGG | 0.333422 | 5_1:+10156109 | Msa0716660:CDS |
| GGAACAGGAAATGGGTCTAT+TGG | 0.339719 | 5_1:+10156330 | Msa0716660:CDS |
| TCAAGAAGAGGAACAGGAAA+TGG | 0.353373 | 5_1:+10156321 | Msa0716660:CDS |
| TGGAAGAATTGAGAAAGGTT+AGG | 0.366848 | 5_1:-10155633 | None:intergenic |
| GCGCAGCACGGCAACCATAT+TGG | 0.371839 | 5_1:-10155787 | None:intergenic |
| GAAACTCTTGTTCTATCAAT+AGG | 0.372162 | 5_1:-10155900 | None:intergenic |
| TAGGGTCTTGTGTTGGGTTG+AGG | 0.383438 | 5_1:-10155614 | None:intergenic |
| GCCAGATCAAGAAGAGGAAC+AGG | 0.386704 | 5_1:+10156315 | Msa0716660:CDS |
| TATTATCAAGGCTAGGTTAG+AGG | 0.393583 | 5_1:+10155818 | Msa0716660:CDS |
| ATGGTTTGAAGGTCAAGCTT+AGG | 0.403867 | 5_1:+10155931 | Msa0716660:CDS |
| TGAAGCAATCAAGGTTGAAA+TGG | 0.408404 | 5_1:+10155662 | Msa0716660:CDS |
| GGTACCTAGCGATGAGGTTA+TGG | 0.409528 | 5_1:+10156046 | Msa0716660:CDS |
| TAAAATTGTGTTGGATCATA+AGG | 0.410572 | 5_1:+10155986 | Msa0716660:CDS |
| GAACAGGAAATGGGTCTATT+GGG | 0.411207 | 5_1:+10156331 | Msa0716660:CDS |
| CCAAGAAGTTGAAGCAATCA+AGG | 0.414640 | 5_1:+10155653 | Msa0716660:CDS |
| AAAGGTTAGGGTCTTGTGTT+GGG | 0.420934 | 5_1:-10155620 | None:intergenic |
| AGATCGAATGGATTCCAATA+TGG | 0.422216 | 5_1:+10155773 | Msa0716660:CDS |
| TTCTGTCACAAATGGTTTGA+AGG | 0.426397 | 5_1:+10155920 | Msa0716660:CDS |
| GAAAGGTTAGGGTCTTGTGT+TGG | 0.429691 | 5_1:-10155621 | None:intergenic |
| GTTCCTCTTCTTGATCTGGC+TGG | 0.433751 | 5_1:-10156312 | None:intergenic |
| GGTGTGTCTCATTGCAATGT+TGG | 0.443343 | 5_1:+10156382 | Msa0716660:CDS |
| GAGTTTGAATAAGCTTCATC+AGG | 0.446662 | 5_1:+10156172 | Msa0716660:CDS |
| GAAGATGTTGACCTTGAACT+AGG | 0.449428 | 5_1:+10155588 | Msa0716660:CDS |
| TCTTCAATTCCACATAACTT+AGG | 0.449723 | 5_1:-10155545 | None:intergenic |
| GGAAGAATTGAGAAAGGTTA+GGG | 0.456810 | 5_1:-10155632 | None:intergenic |
| TTATGTGGAATTGAAGAAAC+AGG | 0.464858 | 5_1:+10155551 | Msa0716660:CDS |
| GGTTGAGGTTCCCTAGTTCA+AGG | 0.465157 | 5_1:-10155599 | None:intergenic |
| ACAAGAGTTTCTGTCACAAA+TGG | 0.466661 | 5_1:+10155912 | Msa0716660:CDS |
| TGGTTTGAAGGTCAAGCTTA+GGG | 0.467749 | 5_1:+10155932 | Msa0716660:CDS |
| TTATGGAGAAGATGATATCA+GGG | 0.472731 | 5_1:+10156063 | Msa0716660:CDS |
| CTGAAGATCTAATAAGAGAT+TGG | 0.474698 | 5_1:-10155694 | None:intergenic |
| CTTCTTGGAAGAATTGAGAA+AGG | 0.476346 | 5_1:-10155638 | None:intergenic |
| AAGAACTTTCGCACTGTGAG+TGG | 0.479831 | 5_1:-10155739 | None:intergenic |
| CTGATATGGGTACTCAGGTT+AGG | 0.482097 | 5_1:+10156123 | Msa0716660:CDS |
| AAGATGTTGACCTTGAACTA+GGG | 0.491097 | 5_1:+10155589 | Msa0716660:CDS |
| CAAGAAGAGGAACAGGAAAT+GGG | 0.504589 | 5_1:+10156322 | Msa0716660:CDS |
| AATGCCGCTCAATACATTCA+TGG | 0.510001 | 5_1:+10156266 | Msa0716660:CDS |
| AAAATCGTTCCTAAGTTATG+TGG | 0.510394 | 5_1:+10155536 | Msa0716660:CDS |
| CTTGAGGGATAAAATTGTGT+TGG | 0.525186 | 5_1:+10155977 | Msa0716660:CDS |
| TCGCGGGTTAAGAGATCGAA+TGG | 0.527380 | 5_1:+10155761 | Msa0716660:CDS |
| GGGAAAACAGATGCTGATAT+GGG | 0.530615 | 5_1:+10156110 | Msa0716660:CDS |
| TATGGTTGCCGTGCTGCGCA+AGG | 0.538999 | 5_1:+10155791 | Msa0716660:CDS |
| GGTTAGGCATGAAGCTGTGA+TGG | 0.548034 | 5_1:+10156139 | Msa0716660:CDS |
| AGAAGGTACTATACTGTGAC+TGG | 0.548069 | 5_1:+10156020 | Msa0716660:CDS |
| ATATCAGAATGCTACAAAGA+AGG | 0.548916 | 5_1:+10155873 | Msa0716660:CDS |
| CACAGTGCGAAAGTTCTTCG+CGG | 0.552229 | 5_1:+10155744 | Msa0716660:CDS |
| AGATGCTGATATGGGTACTC+AGG | 0.557342 | 5_1:+10156118 | Msa0716660:CDS |
| GCGCAAGGCAAATATTATCA+AGG | 0.557494 | 5_1:+10155806 | Msa0716660:CDS |
| ATAAGGAGGATTTGAAGAGA+AGG | 0.568999 | 5_1:+10156003 | Msa0716660:CDS |
| AATTGTGTTGGATCATAAGG+AGG | 0.571824 | 5_1:+10155989 | Msa0716660:CDS |
| ACAGTGCGAAAGTTCTTCGC+GGG | 0.594395 | 5_1:+10155745 | Msa0716660:CDS |
| AATATTTGCCTTGCGCAGCA+CGG | 0.597917 | 5_1:-10155799 | None:intergenic |
| TTCTCCATAACCTCATCGCT+AGG | 0.616046 | 5_1:-10156050 | None:intergenic |
| GGATAACATTGAGGATAATG+TGG | 0.629617 | 5_1:+10156241 | Msa0716660:CDS |
| AAGCTGTGATGGATATTCAG+AGG | 0.639947 | 5_1:+10156150 | Msa0716660:CDS |
| AGGCAAATATTATCAAGGCT+AGG | 0.642391 | 5_1:+10155811 | Msa0716660:CDS |
| GTACTATACTGTGACTGGCG+AGG | 0.642649 | 5_1:+10156025 | Msa0716660:CDS |
| ATGCCAGCCAGATCAAGAAG+AGG | 0.645479 | 5_1:+10156309 | Msa0716660:CDS |
| TCCACCATGAATGTATTGAG+CGG | 0.666525 | 5_1:-10156270 | None:intergenic |
| GCCGCTCAATACATTCATGG+TGG | 0.694316 | 5_1:+10156269 | Msa0716660:CDS |
| TGGCGAGGTACCTAGCGATG+AGG | 0.723823 | 5_1:+10156040 | Msa0716660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TAAAATTGTGTTGGATCATA+AGG | + | chr5_1:10155986-10156005 | Msa0716660:CDS | 25.0% |
| !! | TTTTCTTGATATGGCTATTT+TGG | + | chr5_1:10156196-10156215 | Msa0716660:CDS | 25.0% |
| ! | TAAAATTGTGTTGGATCATA+AGG | + | chr5_1:10155986-10156005 | Msa0716660:CDS | 25.0% |
| !! | TTTTCTTGATATGGCTATTT+TGG | + | chr5_1:10156196-10156215 | Msa0716660:CDS | 25.0% |
| AAAATCGTTCCTAAGTTATG+TGG | + | chr5_1:10155536-10155555 | Msa0716660:CDS | 30.0% | |
| TCTTCAATTCCACATAACTT+AGG | - | chr5_1:10155548-10155567 | None:intergenic | 30.0% | |
| TTATGTGGAATTGAAGAAAC+AGG | + | chr5_1:10155551-10155570 | Msa0716660:CDS | 30.0% | |
| CTGAAGATCTAATAAGAGAT+TGG | - | chr5_1:10155697-10155716 | None:intergenic | 30.0% | |
| ATATCAGAATGCTACAAAGA+AGG | + | chr5_1:10155873-10155892 | Msa0716660:CDS | 30.0% | |
| GAAACTCTTGTTCTATCAAT+AGG | - | chr5_1:10155903-10155922 | None:intergenic | 30.0% | |
| TTATGGAGAAGATGATATCA+GGG | + | chr5_1:10156063-10156082 | Msa0716660:CDS | 30.0% | |
| ! | TCATCAGGTTTTTCTTGATA+TGG | + | chr5_1:10156187-10156206 | Msa0716660:CDS | 30.0% |
| AAAATCGTTCCTAAGTTATG+TGG | + | chr5_1:10155536-10155555 | Msa0716660:CDS | 30.0% | |
| TCTTCAATTCCACATAACTT+AGG | - | chr5_1:10155548-10155567 | None:intergenic | 30.0% | |
| TTATGTGGAATTGAAGAAAC+AGG | + | chr5_1:10155551-10155570 | Msa0716660:CDS | 30.0% | |
| CTGAAGATCTAATAAGAGAT+TGG | - | chr5_1:10155697-10155716 | None:intergenic | 30.0% | |
| ATATCAGAATGCTACAAAGA+AGG | + | chr5_1:10155873-10155892 | Msa0716660:CDS | 30.0% | |
| GAAACTCTTGTTCTATCAAT+AGG | - | chr5_1:10155903-10155922 | None:intergenic | 30.0% | |
| TTATGGAGAAGATGATATCA+GGG | + | chr5_1:10156063-10156082 | Msa0716660:CDS | 30.0% | |
| ! | TCATCAGGTTTTTCTTGATA+TGG | + | chr5_1:10156187-10156206 | Msa0716660:CDS | 30.0% |
| AAGATGTTGACCTTGAACTA+GGG | + | chr5_1:10155589-10155608 | Msa0716660:CDS | 35.0% | |
| GGAAGAATTGAGAAAGGTTA+GGG | - | chr5_1:10155635-10155654 | None:intergenic | 35.0% | |
| TGGAAGAATTGAGAAAGGTT+AGG | - | chr5_1:10155636-10155655 | None:intergenic | 35.0% | |
| CTTCTTGGAAGAATTGAGAA+AGG | - | chr5_1:10155641-10155660 | None:intergenic | 35.0% | |
| TGAAGCAATCAAGGTTGAAA+TGG | + | chr5_1:10155662-10155681 | Msa0716660:CDS | 35.0% | |
| ! | AGATCGAATGGATTCCAATA+TGG | + | chr5_1:10155773-10155792 | Msa0716660:CDS | 35.0% |
| AGGCAAATATTATCAAGGCT+AGG | + | chr5_1:10155811-10155830 | Msa0716660:CDS | 35.0% | |
| TATTATCAAGGCTAGGTTAG+AGG | + | chr5_1:10155818-10155837 | Msa0716660:CDS | 35.0% | |
| ACAAGAGTTTCTGTCACAAA+TGG | + | chr5_1:10155912-10155931 | Msa0716660:CDS | 35.0% | |
| TTCTGTCACAAATGGTTTGA+AGG | + | chr5_1:10155920-10155939 | Msa0716660:CDS | 35.0% | |
| ! | TGAATGATTTTCAGTCCTTG+AGG | + | chr5_1:10155961-10155980 | Msa0716660:CDS | 35.0% |
| ! | GAATGATTTTCAGTCCTTGA+GGG | + | chr5_1:10155962-10155981 | Msa0716660:CDS | 35.0% |
| ! | CAACACAATTTTATCCCTCA+AGG | - | chr5_1:10155979-10155998 | None:intergenic | 35.0% |
| CTTGAGGGATAAAATTGTGT+TGG | + | chr5_1:10155977-10155996 | Msa0716660:CDS | 35.0% | |
| AATTGTGTTGGATCATAAGG+AGG | + | chr5_1:10155989-10156008 | Msa0716660:CDS | 35.0% | |
| ATAAGGAGGATTTGAAGAGA+AGG | + | chr5_1:10156003-10156022 | Msa0716660:CDS | 35.0% | |
| GTTATGGAGAAGATGATATC+AGG | + | chr5_1:10156062-10156081 | Msa0716660:CDS | 35.0% | |
| ! | GAGTCTCAAAGTTGAGTTTT+TGG | + | chr5_1:10156085-10156104 | Msa0716660:CDS | 35.0% |
| !!! | TCAAAGTTGAGTTTTTGGCT+GGG | + | chr5_1:10156090-10156109 | Msa0716660:CDS | 35.0% |
| GAGTTTGAATAAGCTTCATC+AGG | + | chr5_1:10156172-10156191 | Msa0716660:CDS | 35.0% | |
| CGAAAAAGTGGATAACATTG+AGG | + | chr5_1:10156232-10156251 | Msa0716660:CDS | 35.0% | |
| GGATAACATTGAGGATAATG+TGG | + | chr5_1:10156241-10156260 | Msa0716660:CDS | 35.0% | |
| AAGATGTTGACCTTGAACTA+GGG | + | chr5_1:10155589-10155608 | Msa0716660:CDS | 35.0% | |
| GGAAGAATTGAGAAAGGTTA+GGG | - | chr5_1:10155635-10155654 | None:intergenic | 35.0% | |
| TGGAAGAATTGAGAAAGGTT+AGG | - | chr5_1:10155636-10155655 | None:intergenic | 35.0% | |
| CTTCTTGGAAGAATTGAGAA+AGG | - | chr5_1:10155641-10155660 | None:intergenic | 35.0% | |
| TGAAGCAATCAAGGTTGAAA+TGG | + | chr5_1:10155662-10155681 | Msa0716660:CDS | 35.0% | |
| ! | AGATCGAATGGATTCCAATA+TGG | + | chr5_1:10155773-10155792 | Msa0716660:CDS | 35.0% |
| AGGCAAATATTATCAAGGCT+AGG | + | chr5_1:10155811-10155830 | Msa0716660:CDS | 35.0% | |
| TATTATCAAGGCTAGGTTAG+AGG | + | chr5_1:10155818-10155837 | Msa0716660:CDS | 35.0% | |
| ACAAGAGTTTCTGTCACAAA+TGG | + | chr5_1:10155912-10155931 | Msa0716660:CDS | 35.0% | |
| TTCTGTCACAAATGGTTTGA+AGG | + | chr5_1:10155920-10155939 | Msa0716660:CDS | 35.0% | |
| ! | TGAATGATTTTCAGTCCTTG+AGG | + | chr5_1:10155961-10155980 | Msa0716660:CDS | 35.0% |
| ! | GAATGATTTTCAGTCCTTGA+GGG | + | chr5_1:10155962-10155981 | Msa0716660:CDS | 35.0% |
| ! | CAACACAATTTTATCCCTCA+AGG | - | chr5_1:10155979-10155998 | None:intergenic | 35.0% |
| CTTGAGGGATAAAATTGTGT+TGG | + | chr5_1:10155977-10155996 | Msa0716660:CDS | 35.0% | |
| AATTGTGTTGGATCATAAGG+AGG | + | chr5_1:10155989-10156008 | Msa0716660:CDS | 35.0% | |
| ATAAGGAGGATTTGAAGAGA+AGG | + | chr5_1:10156003-10156022 | Msa0716660:CDS | 35.0% | |
| GTTATGGAGAAGATGATATC+AGG | + | chr5_1:10156062-10156081 | Msa0716660:CDS | 35.0% | |
| ! | GAGTCTCAAAGTTGAGTTTT+TGG | + | chr5_1:10156085-10156104 | Msa0716660:CDS | 35.0% |
| !!! | TCAAAGTTGAGTTTTTGGCT+GGG | + | chr5_1:10156090-10156109 | Msa0716660:CDS | 35.0% |
| GAGTTTGAATAAGCTTCATC+AGG | + | chr5_1:10156172-10156191 | Msa0716660:CDS | 35.0% | |
| CGAAAAAGTGGATAACATTG+AGG | + | chr5_1:10156232-10156251 | Msa0716660:CDS | 35.0% | |
| GGATAACATTGAGGATAATG+TGG | + | chr5_1:10156241-10156260 | Msa0716660:CDS | 35.0% | |
| GAAGATGTTGACCTTGAACT+AGG | + | chr5_1:10155588-10155607 | Msa0716660:CDS | 40.0% | |
| ! | AAAGGTTAGGGTCTTGTGTT+GGG | - | chr5_1:10155623-10155642 | None:intergenic | 40.0% |
| CCTTGATTGCTTCAACTTCT+TGG | - | chr5_1:10155656-10155675 | None:intergenic | 40.0% | |
| CCAAGAAGTTGAAGCAATCA+AGG | + | chr5_1:10155653-10155672 | Msa0716660:CDS | 40.0% | |
| GCGCAAGGCAAATATTATCA+AGG | + | chr5_1:10155806-10155825 | Msa0716660:CDS | 40.0% | |
| ATGGTTTGAAGGTCAAGCTT+AGG | + | chr5_1:10155931-10155950 | Msa0716660:CDS | 40.0% | |
| TGGTTTGAAGGTCAAGCTTA+GGG | + | chr5_1:10155932-10155951 | Msa0716660:CDS | 40.0% | |
| !! | AGAAGGTACTATACTGTGAC+TGG | + | chr5_1:10156020-10156039 | Msa0716660:CDS | 40.0% |
| !!! | CTCAAAGTTGAGTTTTTGGC+TGG | + | chr5_1:10156089-10156108 | Msa0716660:CDS | 40.0% |
| TGGGAAAACAGATGCTGATA+TGG | + | chr5_1:10156109-10156128 | Msa0716660:CDS | 40.0% | |
| GGGAAAACAGATGCTGATAT+GGG | + | chr5_1:10156110-10156129 | Msa0716660:CDS | 40.0% | |
| !! | AAGCTGTGATGGATATTCAG+AGG | + | chr5_1:10156150-10156169 | Msa0716660:CDS | 40.0% |
| !!! | GCTATTTTGGTTGAGACTCA+AGG | + | chr5_1:10156209-10156228 | Msa0716660:CDS | 40.0% |
| AATGCCGCTCAATACATTCA+TGG | + | chr5_1:10156266-10156285 | Msa0716660:CDS | 40.0% | |
| TCCACCATGAATGTATTGAG+CGG | - | chr5_1:10156273-10156292 | None:intergenic | 40.0% | |
| TCAAGAAGAGGAACAGGAAA+TGG | + | chr5_1:10156321-10156340 | Msa0716660:CDS | 40.0% | |
| CAAGAAGAGGAACAGGAAAT+GGG | + | chr5_1:10156322-10156341 | Msa0716660:CDS | 40.0% | |
| GAACAGGAAATGGGTCTATT+GGG | + | chr5_1:10156331-10156350 | Msa0716660:CDS | 40.0% | |
| !! | TGTTTTGTTGATTGTGCTGC+TGG | + | chr5_1:10156361-10156380 | Msa0716660:CDS | 40.0% |
| GAAGATGTTGACCTTGAACT+AGG | + | chr5_1:10155588-10155607 | Msa0716660:CDS | 40.0% | |
| ! | AAAGGTTAGGGTCTTGTGTT+GGG | - | chr5_1:10155623-10155642 | None:intergenic | 40.0% |
| CCTTGATTGCTTCAACTTCT+TGG | - | chr5_1:10155656-10155675 | None:intergenic | 40.0% | |
| CCAAGAAGTTGAAGCAATCA+AGG | + | chr5_1:10155653-10155672 | Msa0716660:CDS | 40.0% | |
| GCGCAAGGCAAATATTATCA+AGG | + | chr5_1:10155806-10155825 | Msa0716660:CDS | 40.0% | |
| ATGGTTTGAAGGTCAAGCTT+AGG | + | chr5_1:10155931-10155950 | Msa0716660:CDS | 40.0% | |
| TGGTTTGAAGGTCAAGCTTA+GGG | + | chr5_1:10155932-10155951 | Msa0716660:CDS | 40.0% | |
| !! | AGAAGGTACTATACTGTGAC+TGG | + | chr5_1:10156020-10156039 | Msa0716660:CDS | 40.0% |
| !!! | CTCAAAGTTGAGTTTTTGGC+TGG | + | chr5_1:10156089-10156108 | Msa0716660:CDS | 40.0% |
| TGGGAAAACAGATGCTGATA+TGG | + | chr5_1:10156109-10156128 | Msa0716660:CDS | 40.0% | |
| GGGAAAACAGATGCTGATAT+GGG | + | chr5_1:10156110-10156129 | Msa0716660:CDS | 40.0% | |
| !! | AAGCTGTGATGGATATTCAG+AGG | + | chr5_1:10156150-10156169 | Msa0716660:CDS | 40.0% |
| !!! | GCTATTTTGGTTGAGACTCA+AGG | + | chr5_1:10156209-10156228 | Msa0716660:CDS | 40.0% |
| AATGCCGCTCAATACATTCA+TGG | + | chr5_1:10156266-10156285 | Msa0716660:CDS | 40.0% | |
| TCCACCATGAATGTATTGAG+CGG | - | chr5_1:10156273-10156292 | None:intergenic | 40.0% | |
| TCAAGAAGAGGAACAGGAAA+TGG | + | chr5_1:10156321-10156340 | Msa0716660:CDS | 40.0% | |
| CAAGAAGAGGAACAGGAAAT+GGG | + | chr5_1:10156322-10156341 | Msa0716660:CDS | 40.0% | |
| GAACAGGAAATGGGTCTATT+GGG | + | chr5_1:10156331-10156350 | Msa0716660:CDS | 40.0% | |
| !! | TGTTTTGTTGATTGTGCTGC+TGG | + | chr5_1:10156361-10156380 | Msa0716660:CDS | 40.0% |
| ! | GAAAGGTTAGGGTCTTGTGT+TGG | - | chr5_1:10155624-10155643 | None:intergenic | 45.0% |
| AAGAACTTTCGCACTGTGAG+TGG | - | chr5_1:10155742-10155761 | None:intergenic | 45.0% | |
| AATATTTGCCTTGCGCAGCA+CGG | - | chr5_1:10155802-10155821 | None:intergenic | 45.0% | |
| TTCTCCATAACCTCATCGCT+AGG | - | chr5_1:10156053-10156072 | None:intergenic | 45.0% | |
| AGATGCTGATATGGGTACTC+AGG | + | chr5_1:10156118-10156137 | Msa0716660:CDS | 45.0% | |
| CTGATATGGGTACTCAGGTT+AGG | + | chr5_1:10156123-10156142 | Msa0716660:CDS | 45.0% | |
| TGAGACTCAAGGCGAAAAAG+TGG | + | chr5_1:10156220-10156239 | Msa0716660:CDS | 45.0% | |
| TCCTGTTCCTCTTCTTGATC+TGG | - | chr5_1:10156319-10156338 | None:intergenic | 45.0% | |
| GGAACAGGAAATGGGTCTAT+TGG | + | chr5_1:10156330-10156349 | Msa0716660:CDS | 45.0% | |
| GGTGTGTCTCATTGCAATGT+TGG | + | chr5_1:10156382-10156401 | Msa0716660:CDS | 45.0% | |
| ! | GAAAGGTTAGGGTCTTGTGT+TGG | - | chr5_1:10155624-10155643 | None:intergenic | 45.0% |
| AAGAACTTTCGCACTGTGAG+TGG | - | chr5_1:10155742-10155761 | None:intergenic | 45.0% | |
| AATATTTGCCTTGCGCAGCA+CGG | - | chr5_1:10155802-10155821 | None:intergenic | 45.0% | |
| TTCTCCATAACCTCATCGCT+AGG | - | chr5_1:10156053-10156072 | None:intergenic | 45.0% | |
| AGATGCTGATATGGGTACTC+AGG | + | chr5_1:10156118-10156137 | Msa0716660:CDS | 45.0% | |
| CTGATATGGGTACTCAGGTT+AGG | + | chr5_1:10156123-10156142 | Msa0716660:CDS | 45.0% | |
| TGAGACTCAAGGCGAAAAAG+TGG | + | chr5_1:10156220-10156239 | Msa0716660:CDS | 45.0% | |
| TCCTGTTCCTCTTCTTGATC+TGG | - | chr5_1:10156319-10156338 | None:intergenic | 45.0% | |
| GGAACAGGAAATGGGTCTAT+TGG | + | chr5_1:10156330-10156349 | Msa0716660:CDS | 45.0% | |
| GGTGTGTCTCATTGCAATGT+TGG | + | chr5_1:10156382-10156401 | Msa0716660:CDS | 45.0% | |
| GGTTGAGGTTCCCTAGTTCA+AGG | - | chr5_1:10155602-10155621 | None:intergenic | 50.0% | |
| ! | TAGGGTCTTGTGTTGGGTTG+AGG | - | chr5_1:10155617-10155636 | None:intergenic | 50.0% |
| CACAGTGCGAAAGTTCTTCG+CGG | + | chr5_1:10155744-10155763 | Msa0716660:CDS | 50.0% | |
| ACAGTGCGAAAGTTCTTCGC+GGG | + | chr5_1:10155745-10155764 | Msa0716660:CDS | 50.0% | |
| ! | TCGCGGGTTAAGAGATCGAA+TGG | + | chr5_1:10155761-10155780 | Msa0716660:CDS | 50.0% |
| GTACTATACTGTGACTGGCG+AGG | + | chr5_1:10156025-10156044 | Msa0716660:CDS | 50.0% | |
| GGTACCTAGCGATGAGGTTA+TGG | + | chr5_1:10156046-10156065 | Msa0716660:CDS | 50.0% | |
| GGTTAGGCATGAAGCTGTGA+TGG | + | chr5_1:10156139-10156158 | Msa0716660:CDS | 50.0% | |
| GCCGCTCAATACATTCATGG+TGG | + | chr5_1:10156269-10156288 | Msa0716660:CDS | 50.0% | |
| ATGCCAGCCAGATCAAGAAG+AGG | + | chr5_1:10156309-10156328 | Msa0716660:CDS | 50.0% | |
| GTTCCTCTTCTTGATCTGGC+TGG | - | chr5_1:10156315-10156334 | None:intergenic | 50.0% | |
| GCCAGATCAAGAAGAGGAAC+AGG | + | chr5_1:10156315-10156334 | Msa0716660:CDS | 50.0% | |
| GGTTGAGGTTCCCTAGTTCA+AGG | - | chr5_1:10155602-10155621 | None:intergenic | 50.0% | |
| ! | TAGGGTCTTGTGTTGGGTTG+AGG | - | chr5_1:10155617-10155636 | None:intergenic | 50.0% |
| CACAGTGCGAAAGTTCTTCG+CGG | + | chr5_1:10155744-10155763 | Msa0716660:CDS | 50.0% | |
| ACAGTGCGAAAGTTCTTCGC+GGG | + | chr5_1:10155745-10155764 | Msa0716660:CDS | 50.0% | |
| ! | TCGCGGGTTAAGAGATCGAA+TGG | + | chr5_1:10155761-10155780 | Msa0716660:CDS | 50.0% |
| GTACTATACTGTGACTGGCG+AGG | + | chr5_1:10156025-10156044 | Msa0716660:CDS | 50.0% | |
| GGTACCTAGCGATGAGGTTA+TGG | + | chr5_1:10156046-10156065 | Msa0716660:CDS | 50.0% | |
| GGTTAGGCATGAAGCTGTGA+TGG | + | chr5_1:10156139-10156158 | Msa0716660:CDS | 50.0% | |
| GCCGCTCAATACATTCATGG+TGG | + | chr5_1:10156269-10156288 | Msa0716660:CDS | 50.0% | |
| ATGCCAGCCAGATCAAGAAG+AGG | + | chr5_1:10156309-10156328 | Msa0716660:CDS | 50.0% | |
| GTTCCTCTTCTTGATCTGGC+TGG | - | chr5_1:10156315-10156334 | None:intergenic | 50.0% | |
| GCCAGATCAAGAAGAGGAAC+AGG | + | chr5_1:10156315-10156334 | Msa0716660:CDS | 50.0% | |
| GCGCAGCACGGCAACCATAT+TGG | - | chr5_1:10155790-10155809 | None:intergenic | 60.0% | |
| TATGGTTGCCGTGCTGCGCA+AGG | + | chr5_1:10155791-10155810 | Msa0716660:CDS | 60.0% | |
| ! | TGGCGAGGTACCTAGCGATG+AGG | + | chr5_1:10156040-10156059 | Msa0716660:CDS | 60.0% |
| GCGCAGCACGGCAACCATAT+TGG | - | chr5_1:10155790-10155809 | None:intergenic | 60.0% | |
| TATGGTTGCCGTGCTGCGCA+AGG | + | chr5_1:10155791-10155810 | Msa0716660:CDS | 60.0% | |
| ! | TGGCGAGGTACCTAGCGATG+AGG | + | chr5_1:10156040-10156059 | Msa0716660:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 10155519 | 10156412 | 10155519 | ID=Msa0716660;Name=Msa0716660 |
| chr5_1 | mRNA | 10155519 | 10156412 | 10155519 | ID=Msa0716660-mRNA-1;Parent=Msa0716660;Name=Msa0716660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|297 |
| chr5_1 | exon | 10155519 | 10156412 | 10155519 | ID=Msa0716660-mRNA-1:exon:4046;Parent=Msa0716660-mRNA-1 |
| chr5_1 | CDS | 10155519 | 10156412 | 10155519 | ID=Msa0716660-mRNA-1:cds;Parent=Msa0716660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
