AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0084380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084380 MtrunA17_Chr1g0200061 98.606 287 4 0 1 287 140 426 0.0 551
Msa0084380 MtrunA17_Chr1g0204031 80.000 50 10 0 35 84 432 481 8.53e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084380 AT5G50840.2 76.157 281 62 1 5 285 127 402 5.84e-138 395
Msa0084380 AT5G50840.1 76.157 281 62 1 5 285 126 401 6.10e-138 395

Find 55 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCAGTGTGTTTGGTGTTT+TGG 0.199563 1_2:-63771450 Msa0084380:three_prime_UTR
TCTAATACCTTGTTTATATC+TGG 0.230764 1_2:-63771732 Msa0084380:three_prime_UTR
GTGGCATGTCTTGGTTTGTT+AGG 0.268926 1_2:-63771705 Msa0084380:three_prime_UTR
CAACCACCTCTTCTTCATAT+TGG 0.283834 1_2:+63771788 None:intergenic
ACAATTCATGAAAAGGAAAA+AGG 0.300936 1_2:+63771581 None:intergenic
AGAACAAGTATCTCAGTTAT+TGG 0.302337 1_2:-63772905 Msa0084380:CDS
ATCGCTATGCCGGTCACTTC+AGG 0.373308 1_2:-63771867 Msa0084380:CDS
TGCTACAGGATGTGAGTATC+AGG 0.375897 1_2:-63773521 Msa0084380:intron
AGGCTCCCAAGCCAAGTTTC+CGG 0.377031 1_2:+63771513 None:intergenic
TGGCATGTCTTGGTTTGTTA+GGG 0.377791 1_2:-63771704 Msa0084380:three_prime_UTR
AGAGAAATTCCAACAGTTCC+AGG 0.384564 1_2:-63772842 Msa0084380:intron
TTCAAACCTTGATTGCATCT+TGG 0.400861 1_2:+63774812 None:intergenic
ACTATTATTACTCTTGTTCT+CGG 0.407706 1_2:+63771823 None:intergenic
CAGAATAAATGTCACCTTCT+GGG 0.408951 1_2:+63773111 None:intergenic
TATTGCAATACCATTGAAAA+CGG 0.427155 1_2:-63771633 Msa0084380:three_prime_UTR
AAAATACCGAGTACATGTTA+TGG 0.427576 1_2:+63771478 None:intergenic
ATTGCAATACCATTGAAAAC+GGG 0.443165 1_2:-63771632 Msa0084380:three_prime_UTR
CGTTCTCCTTTAGCTGAGAA+AGG 0.449090 1_2:+63773475 None:intergenic
ACAGTTGAAGCAAAAGTCAT+TGG 0.459008 1_2:-63773007 Msa0084380:intron
ACTCAAGTATCAACAAGTAT+TGG 0.464833 1_2:-63777262 Msa0084380:CDS
ATAAGCTTGAGTCACTATGC+AGG 0.470749 1_2:-63776418 Msa0084380:CDS
ATGTCATACAATTCATGAAA+AGG 0.477709 1_2:+63771574 None:intergenic
TAAGTTCCAAGATGCAATCA+AGG 0.480936 1_2:-63774818 Msa0084380:intron
TCTGGACTAGTGGCATGTCT+TGG 0.486438 1_2:-63771714 Msa0084380:three_prime_UTR
CGTTTGCAGCTGACAACTGA+TGG 0.491667 1_2:-63772865 Msa0084380:CDS
TGATTGCCTTTCTCAGCTAA+AGG 0.494939 1_2:-63773481 Msa0084380:CDS
CGAGCGCTTGAAGAAACAGC+TGG 0.505935 1_2:-63771921 Msa0084380:CDS
GGTTGCAAACAACTTCTAGA+AGG 0.511261 1_2:-63771770 Msa0084380:three_prime_UTR
ACATGAGGAAAGATCTGCTC+AGG 0.520293 1_2:-63772953 Msa0084380:CDS
ATCAATGAAGGAACTCAAGA+AGG 0.523923 1_2:-63772258 Msa0084380:CDS
GCGTGCACTTAAATCAGAAA+AGG 0.525607 1_2:-63777301 Msa0084380:CDS
TCCTCTCTGCCTGAAGTGAC+CGG 0.533884 1_2:+63771858 None:intergenic
TCAGATGGCAAAATCAATGA+AGG 0.543783 1_2:-63772270 Msa0084380:intron
GCAAACAACTTCTAGAAGGA+AGG 0.562979 1_2:-63771766 Msa0084380:three_prime_UTR
CTTGTTTATATCTGGACTAG+TGG 0.570516 1_2:-63771724 Msa0084380:three_prime_UTR
GCGTCAAAATAAAATGCTGA+TGG 0.573163 1_2:-63776387 Msa0084380:intron
CAACTGAGGGGCAAAACTTG+AGG 0.580596 1_2:-63774855 Msa0084380:CDS
TGCAAACGTGTATCAACTGA+GGG 0.582847 1_2:-63774868 Msa0084380:CDS
TGAGGGGCAAAACTTGAGGA+TGG 0.583482 1_2:-63774851 Msa0084380:CDS
TGACTCAAGCTTATCTCTGA+CGG 0.609729 1_2:+63776427 None:intergenic
TGAGCAGCAATATGCCCAGA+AGG 0.617929 1_2:-63773125 Msa0084380:intron
TATCAGGCTCGAAGAACGAA+AGG 0.619128 1_2:-63773505 Msa0084380:CDS
GACTGTCCATAACATGTACT+CGG 0.622224 1_2:-63771484 Msa0084380:three_prime_UTR
TCGGCTCCAATATGAAGAAG+AGG 0.623702 1_2:-63771794 Msa0084380:exon
CACTAGTCCAGATATAAACA+AGG 0.636125 1_2:+63771725 None:intergenic
TAAGCTTGAGTCACTATGCA+GGG 0.636629 1_2:-63776417 Msa0084380:CDS
TGTTATGGACAGTCATTGAG+AGG 0.644006 1_2:+63771493 None:intergenic
ACTTATAGAGTTAGTTGACG+AGG 0.647388 1_2:-63772192 Msa0084380:intron
ATTTAAACAAGAGATTGAGA+AGG 0.652438 1_2:-63772410 Msa0084380:intron
GCCGGTCACTTCAGGCAGAG+AGG 0.655548 1_2:-63771859 Msa0084380:CDS
ATGCAAACGTGTATCAACTG+AGG 0.661308 1_2:-63774869 Msa0084380:CDS
GAGTAATAATAGTAACAACT+CGG 0.668165 1_2:-63771813 Msa0084380:CDS
TTGCAATACCATTGAAAACG+GGG 0.677227 1_2:-63771631 Msa0084380:three_prime_UTR
GCTCCAATATGAAGAAGAGG+TGG 0.684488 1_2:-63771791 Msa0084380:exon
GCAAACGTGTATCAACTGAG+GGG 0.772676 1_2:-63774867 Msa0084380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAGAATTTAAATAATTAA+TGG + chr1_2:63772950-63772969 None:intergenic 10.0%
!! TTCTTCAAAAAAAAAAAAAA+AGG + chr1_2:63774043-63774062 None:intergenic 10.0%
!! TTGAAAAAAATGTAATATTT+AGG + chr1_2:63776336-63776355 None:intergenic 10.0%
!! ATATATTATAGAATAGTAAA+TGG + chr1_2:63776572-63776591 None:intergenic 10.0%
!! CTATTCTATAATATATAAAT+AGG - chr1_2:63776576-63776595 Msa0084380:intron 10.0%
!!! TTGATTCATTTTTAAAAATA+TGG + chr1_2:63776731-63776750 None:intergenic 10.0%
!!! AAAAATTAGTTACTGATTAA+GGG + chr1_2:63772223-63772242 None:intergenic 15.0%
!!! AAAAACTTAAAAACAGATTT+TGG - chr1_2:63774172-63774191 Msa0084380:intron 15.0%
!!! TTAAAAATTTGCTGAAAAAT+GGG + chr1_2:63774393-63774412 None:intergenic 15.0%
!!! TTTAAAAATTTGCTGAAAAA+TGG + chr1_2:63774394-63774413 None:intergenic 15.0%
!!! TTGTTATTGTATATATTGTT+GGG - chr1_2:63774558-63774577 Msa0084380:intron 15.0%
!!! GATGAATTATTTTCTTTTAT+AGG - chr1_2:63774580-63774599 Msa0084380:intron 15.0%
!!! TTAGATTTTCTTTGTATATA+GGG + chr1_2:63774742-63774761 None:intergenic 15.0%
!!! TTTAGATTTTCTTTGTATAT+AGG + chr1_2:63774743-63774762 None:intergenic 15.0%
!! ATATACAAAGAAAATCTAAA+TGG - chr1_2:63774743-63774762 Msa0084380:intron 15.0%
!! TATTACTATTCTTTACAAAT+CGG + chr1_2:63775081-63775100 None:intergenic 15.0%
!! AATATTATACCAACTATTAT+CGG + chr1_2:63775334-63775353 None:intergenic 15.0%
!! ATAGCAATACATTTAAAAAG+AGG + chr1_2:63771794-63771813 None:intergenic 20.0%
!! ACATAGTGTAATCAAATTAT+TGG - chr1_2:63771946-63771965 Msa0084380:intron 20.0%
!! CATAGTGTAATCAAATTATT+GGG - chr1_2:63771947-63771966 Msa0084380:intron 20.0%
!!! CAAAAATTAGTTACTGATTA+AGG + chr1_2:63772224-63772243 None:intergenic 20.0%
!! TATAAACTAAACATGAGAAA+TGG + chr1_2:63772679-63772698 None:intergenic 20.0%
!! CAAATTAAACACATATACTT+TGG + chr1_2:63772850-63772869 None:intergenic 20.0%
!! CAAAGTATATGTGTTTAATT+TGG - chr1_2:63772848-63772867 Msa0084380:CDS 20.0%
!! AAACCATCTTAATTATATCT+TGG - chr1_2:63773021-63773040 Msa0084380:intron 20.0%
!! AACCATCTTAATTATATCTT+GGG - chr1_2:63773022-63773041 Msa0084380:intron 20.0%
!!! CATTTCATTTTTGTTTCAAA+AGG + chr1_2:63773100-63773119 None:intergenic 20.0%
!!! ATAAACTTTTAGCAATTTCT+AGG - chr1_2:63773313-63773332 Msa0084380:intron 20.0%
!!! TTGATTTGTTATGAAAGTTT+TGG - chr1_2:63773439-63773458 Msa0084380:intron 20.0%
!! AAAAATTACAAAAGAGTAAG+TGG + chr1_2:63774152-63774171 None:intergenic 20.0%
!!! TTTCAGCAAATTTTTAAATC+TGG - chr1_2:63774396-63774415 Msa0084380:intron 20.0%
!!! GTTGTTATTGTATATATTGT+TGG - chr1_2:63774557-63774576 Msa0084380:intron 20.0%
!! ATTACTATTCTTTACAAATC+GGG + chr1_2:63775080-63775099 None:intergenic 20.0%
!! TAATTGAAAAATGATTCCAT+GGG + chr1_2:63775118-63775137 None:intergenic 20.0%
!! ATAATTGAAAAATGATTCCA+TGG + chr1_2:63775119-63775138 None:intergenic 20.0%
!!! TCTTCTTAAAAAACTTTTCA+GGG + chr1_2:63775267-63775286 None:intergenic 20.0%
!!! CTCTTTTTAAAAGGAAAAAA+GGG - chr1_2:63775441-63775460 Msa0084380:intron 20.0%
!!! AAATCATGTCGAATTATTTT+AGG + chr1_2:63775508-63775527 None:intergenic 20.0%
!!! TATTTATTAACTTTTGAGAC+TGG - chr1_2:63775648-63775667 Msa0084380:intron 20.0%
!! ATTAAAAATTAAGCAACATG+AGG - chr1_2:63775738-63775757 Msa0084380:intron 20.0%
!! TAGCACATAATATAATAAAG+TGG + chr1_2:63775930-63775949 None:intergenic 20.0%
!! ATATAAATAGGGAGATAAAT+TGG - chr1_2:63776588-63776607 Msa0084380:intron 20.0%
!!! AATTACCATATTTTGATAGA+CGG + chr1_2:63776668-63776687 None:intergenic 20.0%
!!! ATGTGTTTTGTTTTTTTTGC+TGG - chr1_2:63771511-63771530 Msa0084380:three_prime_UTR 25.0%
! GTGAACTTTCTTATTATGAT+AGG - chr1_2:63771543-63771562 Msa0084380:three_prime_UTR 25.0%
! CATATTAACTGTTGTTATGT+TGG - chr1_2:63771767-63771786 Msa0084380:three_prime_UTR 25.0%
! ATTAGTTCATTCTACAGAAA+CGG - chr1_2:63771919-63771938 Msa0084380:CDS 25.0%
! GTAATTTGATACTAGGATAT+TGG - chr1_2:63771989-63772008 Msa0084380:intron 25.0%
! TATTAGATAATCAGTTTCAG+AGG + chr1_2:63772366-63772385 None:intergenic 25.0%
! TCACATAAACACATAAACTA+AGG - chr1_2:63772729-63772748 Msa0084380:intron 25.0%
! CACATAAACACATAAACTAA+GGG - chr1_2:63772730-63772749 Msa0084380:intron 25.0%
!!! AGTATATGTGTTTAATTTGG+TGG - chr1_2:63772851-63772870 Msa0084380:CDS 25.0%
! TTTAATGAAATTGCTTATCG+TGG + chr1_2:63772998-63773017 None:intergenic 25.0%
! ACCATCTTAATTATATCTTG+GGG - chr1_2:63773023-63773042 Msa0084380:intron 25.0%
!!! TCATTTTTGTTTCAAAAGGA+TGG + chr1_2:63773096-63773115 None:intergenic 25.0%
!!! TGTATGTAATTTTGTTTAGC+TGG - chr1_2:63773496-63773515 Msa0084380:CDS 25.0%
! CAACATGGAATATAAAAACT+TGG + chr1_2:63773660-63773679 None:intergenic 25.0%
! AATAAGAAAAGGAACTCATT+AGG + chr1_2:63773697-63773716 None:intergenic 25.0%
! CACATTCATGTAATAAGAAA+AGG + chr1_2:63773708-63773727 None:intergenic 25.0%
! ACTCTGTTAATGAAAAAACT+AGG - chr1_2:63773787-63773806 Msa0084380:intron 25.0%
!! ATTCATGTTCCATTATTTTC+AGG - chr1_2:63773810-63773829 Msa0084380:intron 25.0%
!! TTTTGAACAAAGTGTACATT+TGG - chr1_2:63773946-63773965 Msa0084380:intron 25.0%
!!! CTTAAAAACAGATTTTGGAA+AGG - chr1_2:63774177-63774196 Msa0084380:intron 25.0%
! ATTCTATGCTCAAAGATTAA+GGG + chr1_2:63774215-63774234 None:intergenic 25.0%
! TATTCTATGCTCAAAGATTA+AGG + chr1_2:63774216-63774235 None:intergenic 25.0%
! CCAAAGAAACATTAATTTCA+AGG + chr1_2:63774251-63774270 None:intergenic 25.0%
! CCTTGAAATTAATGTTTCTT+TGG - chr1_2:63774248-63774267 Msa0084380:intron 25.0%
! AATCAATCTAAATCAAAGAC+AGG - chr1_2:63774320-63774339 Msa0084380:intron 25.0%
! ATCAATCTAAATCAAAGACA+GGG - chr1_2:63774321-63774340 Msa0084380:intron 25.0%
! ATTAGATTCCAATATGTTCA+AGG - chr1_2:63774428-63774447 Msa0084380:intron 25.0%
! CTGTTAGGAAATAGAATAAA+CGG - chr1_2:63774841-63774860 Msa0084380:CDS 25.0%
! TGTTAGGAAATAGAATAAAC+GGG - chr1_2:63774842-63774861 Msa0084380:CDS 25.0%
! GGAATATTTGTATAGATAAG+AGG - chr1_2:63774888-63774907 Msa0084380:intron 25.0%
!!! ATAGTAATATCTTTTCTAGC+TGG - chr1_2:63775092-63775111 Msa0084380:intron 25.0%
!! GTCTTCTTAAAAAACTTTTC+AGG + chr1_2:63775268-63775287 None:intergenic 25.0%
!!! TTTTAAAAAGAGCCATTGTA+TGG + chr1_2:63775433-63775452 None:intergenic 25.0%
!! ATACAATGGCTCTTTTTAAA+AGG - chr1_2:63775432-63775451 Msa0084380:intron 25.0%
!!! GCTCTTTTTAAAAGGAAAAA+AGG - chr1_2:63775440-63775459 Msa0084380:intron 25.0%
! ATTCGACATGATTTCAATAT+AGG - chr1_2:63775514-63775533 Msa0084380:intron 25.0%
!!! ACCGTTGATTTGTTTAATAA+CGG - chr1_2:63776047-63776066 Msa0084380:intron 25.0%
! ACCGTTATTAAACAAATCAA+CGG + chr1_2:63776051-63776070 None:intergenic 25.0%
!!! TACTTATCCCTATTTTAGAA+TGG - chr1_2:63776119-63776138 Msa0084380:intron 25.0%
! ATTTAAACAAGAGATTGAGA+AGG - chr1_2:63776296-63776315 Msa0084380:intron 25.0%
!! CTTTTCATCCTTAAGATATT+CGG - chr1_2:63776692-63776711 Msa0084380:intron 25.0%
! ACTATTATTACTCTTGTTCT+CGG + chr1_2:63776886-63776905 None:intergenic 25.0%
! GAGTAATAATAGTAACAACT+CGG - chr1_2:63776893-63776912 Msa0084380:intron 25.0%
!! TCTAATACCTTGTTTATATC+TGG - chr1_2:63776974-63776993 Msa0084380:intron 25.0%
! TATTGCAATACCATTGAAAA+CGG - chr1_2:63777073-63777092 Msa0084380:intron 25.0%
! ACAATTCATGAAAAGGAAAA+AGG + chr1_2:63777128-63777147 None:intergenic 25.0%
! ATGTCATACAATTCATGAAA+AGG + chr1_2:63777135-63777154 None:intergenic 25.0%
ACTCAAGTATCAACAAGTAT+TGG - chr1_2:63771444-63771463 Msa0084380:three_prime_UTR 30.0%
GAAAAATCAAGAGAAAGTGA+AGG - chr1_2:63771565-63771584 Msa0084380:three_prime_UTR 30.0%
CTGTACACTGATATTTATAG+AGG - chr1_2:63771666-63771685 Msa0084380:three_prime_UTR 30.0%
! GTAATAGAAACTGGTTTCTA+TGG + chr1_2:63771865-63771884 None:intergenic 30.0%
GACTGTAATGTAATAGAAAC+TGG + chr1_2:63771874-63771893 None:intergenic 30.0%
TACCAGTGTAATTTGATACT+AGG - chr1_2:63771982-63772001 Msa0084380:intron 30.0%
ATCCTAGTATCAAATTACAC+TGG + chr1_2:63771987-63772006 None:intergenic 30.0%
ATTTGATACTAGGATATTGG+AGG - chr1_2:63771992-63772011 Msa0084380:intron 30.0%
TTTGATACTAGGATATTGGA+GGG - chr1_2:63771993-63772012 Msa0084380:intron 30.0%
ATTCAAGTGCTCAATTACAA+AGG + chr1_2:63772050-63772069 None:intergenic 30.0%
TTGCATCTTCTTAACTGTAA+TGG - chr1_2:63772069-63772088 Msa0084380:intron 30.0%
TGCATCTTCTTAACTGTAAT+GGG - chr1_2:63772070-63772089 Msa0084380:intron 30.0%
AGAGAAGCAATACATTTAGA+AGG + chr1_2:63772118-63772137 None:intergenic 30.0%
!!! TGTTGTTTTGAGAAACACTT+AGG - chr1_2:63772145-63772164 Msa0084380:intron 30.0%
!!! GTTGTTTTGAGAAACACTTA+GGG - chr1_2:63772146-63772165 Msa0084380:intron 30.0%
!!! TTGTTTTGAGAAACACTTAG+GGG - chr1_2:63772147-63772166 Msa0084380:intron 30.0%
GAATGCCTAAAAAATTAAGC+AGG - chr1_2:63772412-63772431 Msa0084380:CDS 30.0%
!!! AACCTCCTGCTTAATTTTTT+AGG + chr1_2:63772420-63772439 None:intergenic 30.0%
TCTGACTACAAAACCAAATT+TGG - chr1_2:63772442-63772461 Msa0084380:CDS 30.0%
CTGACTACAAAACCAAATTT+GGG - chr1_2:63772443-63772462 Msa0084380:CDS 30.0%
TGACTACAAAACCAAATTTG+GGG - chr1_2:63772444-63772463 Msa0084380:CDS 30.0%
CAAACAAATTCAGATTTCCA+TGG + chr1_2:63772534-63772553 None:intergenic 30.0%
GCTAATTGAAAATTAGTCCT+TGG - chr1_2:63772562-63772581 Msa0084380:intron 30.0%
AATTGAAAATTAGTCCTTGG+TGG - chr1_2:63772565-63772584 Msa0084380:intron 30.0%
ATTGAAAATTAGTCCTTGGT+GGG - chr1_2:63772566-63772585 Msa0084380:intron 30.0%
! TGGTATCTAAATTCTGAAGA+AGG - chr1_2:63772639-63772658 Msa0084380:intron 30.0%
! GGTATCTAAATTCTGAAGAA+GGG - chr1_2:63772640-63772659 Msa0084380:intron 30.0%
GTTTATGTGTTTATGTGAGT+GGG + chr1_2:63772727-63772746 None:intergenic 30.0%
AGTTTATGTGTTTATGTGAG+TGG + chr1_2:63772728-63772747 None:intergenic 30.0%
TTAAACACATATACTTTGGC+AGG + chr1_2:63772846-63772865 None:intergenic 30.0%
ACCCCAAGATATAATTAAGA+TGG + chr1_2:63773027-63773046 None:intergenic 30.0%
ATTATATCTTGGGGTATAGT+TGG - chr1_2:63773032-63773051 Msa0084380:intron 30.0%
TTATATCTTGGGGTATAGTT+GGG - chr1_2:63773033-63773052 Msa0084380:intron 30.0%
TGTTAAAACTACCAAACGTT+TGG - chr1_2:63773118-63773137 Msa0084380:intron 30.0%
! TTTCTCAAGAAGTAACCTTT+TGG + chr1_2:63773223-63773242 None:intergenic 30.0%
TACTTCTTGAGAAACCTATT+TGG - chr1_2:63773229-63773248 Msa0084380:intron 30.0%
TCAGACAAAATAATTACCAG+CGG + chr1_2:63773266-63773285 None:intergenic 30.0%
CTGAATAGATGTATTTCAAC+AGG - chr1_2:63773282-63773301 Msa0084380:intron 30.0%
!!! GAAAATCTTTTTGGGATTCT+TGG - chr1_2:63773372-63773391 Msa0084380:intron 30.0%
TCAACAAGAATTTCTCAAAG+AGG + chr1_2:63773423-63773442 None:intergenic 30.0%
AAAAGAGACATTCTTCAAGA+CGG + chr1_2:63773536-63773555 None:intergenic 30.0%
AAAAATACTGTAGCGAGATT+AGG + chr1_2:63773564-63773583 None:intergenic 30.0%
!!! CAGTATTTTTTTTCCCTTTC+TGG - chr1_2:63773574-63773593 Msa0084380:intron 30.0%
TGCATTCTTCCTGAAAATAA+TGG + chr1_2:63773822-63773841 None:intergenic 30.0%
ATGTGTCATAAATTAAAGCG+TGG + chr1_2:63773979-63773998 None:intergenic 30.0%
!! TTTTGGAAAGGATATCAAAC+AGG - chr1_2:63774189-63774208 Msa0084380:intron 30.0%
TTTGAGCATAGAATAACAGA+TGG - chr1_2:63774221-63774240 Msa0084380:intron 30.0%
TTGAGCATAGAATAACAGAT+GGG - chr1_2:63774222-63774241 Msa0084380:intron 30.0%
!!! TTGCTACTTAGTTTTGAGTT+CGG - chr1_2:63774296-63774315 Msa0084380:intron 30.0%
GGTTAATATCCCTGAAATAT+AGG - chr1_2:63774666-63774685 Msa0084380:intron 30.0%
TAATATCCCTGAAATATAGG+TGG - chr1_2:63774669-63774688 Msa0084380:intron 30.0%
TGTATAGATAAGAGGATAGT+AGG - chr1_2:63774896-63774915 Msa0084380:intron 30.0%
AAATGAAGACATTTAGACTC+GGG + chr1_2:63775038-63775057 None:intergenic 30.0%
CAAATGAAGACATTTAGACT+CGG + chr1_2:63775039-63775058 None:intergenic 30.0%
GTCTTCATTTGGAAAATTGA+TGG - chr1_2:63775048-63775067 Msa0084380:intron 30.0%
! TTTTACCATCCGATAATAGT+TGG - chr1_2:63775322-63775341 Msa0084380:intron 30.0%
TTATACCAACTATTATCGGA+TGG + chr1_2:63775330-63775349 None:intergenic 30.0%
AACAATCATAGGATCCATAA+AGG + chr1_2:63775475-63775494 None:intergenic 30.0%
AGAACAAGTATCTCAGTTAT+TGG - chr1_2:63775801-63775820 Msa0084380:intron 30.0%
TTGTGACTGAAATGAAAAAG+AGG + chr1_2:63775902-63775921 None:intergenic 30.0%
TATGCACACATAACAAATCA+TGG + chr1_2:63776019-63776038 None:intergenic 30.0%
!! CCAAACACCATTCTAAAATA+GGG + chr1_2:63776129-63776148 None:intergenic 30.0%
! TTCTGATTTGAAACATAGTG+TGG - chr1_2:63776168-63776187 Msa0084380:intron 30.0%
! TCTGATTTGAAACATAGTGT+GGG - chr1_2:63776169-63776188 Msa0084380:intron 30.0%
TCAAACATGCATTGAATTTC+AGG - chr1_2:63776239-63776258 Msa0084380:intron 30.0%
!! TTTTACCACAATGATGGAAA+AGG + chr1_2:63776415-63776434 None:intergenic 30.0%
! TCTGATTTTTACCACAATGA+TGG + chr1_2:63776421-63776440 None:intergenic 30.0%
TCATTGTGGTAAAAATCAGA+TGG - chr1_2:63776421-63776440 Msa0084380:CDS 30.0%
TAAATGGTCAAGAACAAAAC+AGG + chr1_2:63776556-63776575 None:intergenic 30.0%
GTGACTAACATATTGCTTTA+TGG + chr1_2:63776615-63776634 None:intergenic 30.0%
TTTCTCCGTCTATCAAAATA+TGG - chr1_2:63776660-63776679 Msa0084380:intron 30.0%
ATTGCAATACCATTGAAAAC+GGG - chr1_2:63777074-63777093 Msa0084380:intron 30.0%
AAAATACCGAGTACATGTTA+TGG + chr1_2:63777231-63777250 None:intergenic 30.0%
AATCAAGAGAAAGTGAAGGA+AGG - chr1_2:63771569-63771588 Msa0084380:three_prime_UTR 35.0%
TATCAGTGTACAGTAACAAG+TGG + chr1_2:63771659-63771678 None:intergenic 35.0%
GATAACTGAATGTGCTAAGT+CGG - chr1_2:63771740-63771759 Msa0084380:three_prime_UTR 35.0%
! ATGGGATTGTATTGCTCTTT+TGG - chr1_2:63772088-63772107 Msa0084380:intron 35.0%
GCGTCAAAATAAAATGCTGA+TGG - chr1_2:63772319-63772338 Msa0084380:intron 35.0%
TGCCTAAAAAATTAAGCAGG+AGG - chr1_2:63772415-63772434 Msa0084380:CDS 35.0%
CAAATTCAGATTTCCATGGA+TGG + chr1_2:63772530-63772549 None:intergenic 35.0%
ACATATACTTTGGCAGGATA+GGG + chr1_2:63772840-63772859 None:intergenic 35.0%
!! GTGTTTAATTTGGTGGTGTA+AGG - chr1_2:63772858-63772877 Msa0084380:CDS 35.0%
AAACTACCAAACGTTTGGAA+TGG - chr1_2:63773123-63773142 Msa0084380:intron 35.0%
AGTTGTGCAAATATGATGTC+AGG + chr1_2:63773170-63773189 None:intergenic 35.0%
! AAGTAACCTTTTGGATGATC+AGG + chr1_2:63773214-63773233 None:intergenic 35.0%
CAGACAAAATAATTACCAGC+GGG + chr1_2:63773265-63773284 None:intergenic 35.0%
!! TCTCCTCTGGAAAATCTTTT+TGG - chr1_2:63773363-63773382 Msa0084380:intron 35.0%
!! CTCCTCTGGAAAATCTTTTT+GGG - chr1_2:63773364-63773383 Msa0084380:intron 35.0%
! ATCCCAAAAAGATTTTCCAG+AGG + chr1_2:63773369-63773388 None:intergenic 35.0%
TGGGATTCTTGGAAGTAATT+TGG - chr1_2:63773383-63773402 Msa0084380:intron 35.0%
CAAGAATTTCTCAAAGAGGA+GGG + chr1_2:63773419-63773438 None:intergenic 35.0%
ACAAGAATTTCTCAAAGAGG+AGG + chr1_2:63773420-63773439 None:intergenic 35.0%
GATAAAGAGGAGATACAACA+TGG + chr1_2:63773675-63773694 None:intergenic 35.0%
AGGAACTCATTAGGATAAAG+AGG + chr1_2:63773688-63773707 None:intergenic 35.0%
TAAGTTCCAAGATGCAATCA+AGG - chr1_2:63773888-63773907 Msa0084380:intron 35.0%
TTCAAACCTTGATTGCATCT+TGG + chr1_2:63773897-63773916 None:intergenic 35.0%
TACAAAAGAGTAAGTGGTGT+TGG + chr1_2:63774146-63774165 None:intergenic 35.0%
GAAAAATGGGTGTGCAAAAT+AGG + chr1_2:63774380-63774399 None:intergenic 35.0%
TCCAATATGTTCAAGGATAG+AGG - chr1_2:63774435-63774454 Msa0084380:intron 35.0%
TCCTCTATCCTTGAACATAT+TGG + chr1_2:63774439-63774458 None:intergenic 35.0%
AATTACTGCTTGATCTTTCG+CGG + chr1_2:63774473-63774492 None:intergenic 35.0%
AATGCTCTGGCAAATTCTTT+GGG - chr1_2:63774645-63774664 Msa0084380:intron 35.0%
AAGCAAGTGATACTACTGTT+AGG - chr1_2:63774826-63774845 Msa0084380:CDS 35.0%
TTCGAGTAGTTAGTTAGTAG+AGG - chr1_2:63774867-63774886 Msa0084380:CDS 35.0%
ATAAGAGGATAGTAGGATAG+AGG - chr1_2:63774903-63774922 Msa0084380:intron 35.0%
TAAGAGGATAGTAGGATAGA+GGG - chr1_2:63774904-63774923 Msa0084380:intron 35.0%
CGAGTCTAAATGTCTTCATT+TGG - chr1_2:63775037-63775056 Msa0084380:intron 35.0%
!! TAGCAATGGCAATTGCTTTT+TGG + chr1_2:63775156-63775175 None:intergenic 35.0%
TAGCAAAGAGAAGTTAGCAA+TGG + chr1_2:63775170-63775189 None:intergenic 35.0%
! TGTTTTACTGCACCATACAA+TGG - chr1_2:63775418-63775437 Msa0084380:intron 35.0%
GCTCAACAAGAAACAATCAT+AGG + chr1_2:63775486-63775505 None:intergenic 35.0%
CAGAATAAATGTCACCTTCT+GGG + chr1_2:63775598-63775617 None:intergenic 35.0%
ACAGAATAAATGTCACCTTC+TGG + chr1_2:63775599-63775618 None:intergenic 35.0%
ACAGTTGAAGCAAAAGTCAT+TGG - chr1_2:63775699-63775718 Msa0084380:intron 35.0%
AAGTGAATTGTTCACTTCAG+TGG - chr1_2:63776095-63776114 Msa0084380:intron 35.0%
!!! CCCTATTTTAGAATGGTGTT+TGG - chr1_2:63776126-63776145 Msa0084380:intron 35.0%
!! GCCAAACACCATTCTAAAAT+AGG + chr1_2:63776130-63776149 None:intergenic 35.0%
TCAGATGGCAAAATCAATGA+AGG - chr1_2:63776436-63776455 Msa0084380:CDS 35.0%
ATCAATGAAGGAACTCAAGA+AGG - chr1_2:63776448-63776467 Msa0084380:intron 35.0%
ACTTATAGAGTTAGTTGACG+AGG - chr1_2:63776514-63776533 Msa0084380:intron 35.0%
CAATGAGACCGAATATCTTA+AGG + chr1_2:63776703-63776722 None:intergenic 35.0%
TAAGATATTCGGTCTCATTG+CGG - chr1_2:63776703-63776722 Msa0084380:intron 35.0%
AAAAACTTGAATCGCTATGC+CGG - chr1_2:63776829-63776848 Msa0084380:intron 35.0%
CACTAGTCCAGATATAAACA+AGG + chr1_2:63776984-63777003 None:intergenic 35.0%
! CTTGTTTATATCTGGACTAG+TGG - chr1_2:63776982-63777001 Msa0084380:intron 35.0%
TTGCAATACCATTGAAAACG+GGG - chr1_2:63777075-63777094 Msa0084380:intron 35.0%
GCGTGCACTTAAATCAGAAA+AGG - chr1_2:63771405-63771424 Msa0084380:three_prime_UTR 40.0%
!! GTATTGGCTGAAAAAGATGC+AGG - chr1_2:63771460-63771479 Msa0084380:three_prime_UTR 40.0%
!! AGTGAAGGAAGGTATTTGAG+AGG - chr1_2:63771580-63771599 Msa0084380:three_prime_UTR 40.0%
CTAGAAGATCATGCTCACAT+CGG - chr1_2:63771707-63771726 Msa0084380:three_prime_UTR 40.0%
TGAGAAACACTTAGGGGAAA+TGG - chr1_2:63772153-63772172 Msa0084380:intron 40.0%
TGACGGCAAAAGCTACAAAA+AGG + chr1_2:63772265-63772284 None:intergenic 40.0%
TGACTCAAGCTTATCTCTGA+CGG + chr1_2:63772282-63772301 None:intergenic 40.0%
ATAAGCTTGAGTCACTATGC+AGG - chr1_2:63772288-63772307 Msa0084380:intron 40.0%
TAAGCTTGAGTCACTATGCA+GGG - chr1_2:63772289-63772308 Msa0084380:intron 40.0%
! AGTCAGATTAGCCCCAAATT+TGG + chr1_2:63772458-63772477 None:intergenic 40.0%
CTAAGTGATTTCGCATGTAG+TGG - chr1_2:63772479-63772498 Msa0084380:intron 40.0%
! AAAATTAGTCCTTGGTGGGT+TGG - chr1_2:63772570-63772589 Msa0084380:intron 40.0%
!! AAATTAGTCCTTGGTGGGTT+GGG - chr1_2:63772571-63772590 Msa0084380:intron 40.0%
ACTAAACATGAGAAATGGCC+AGG + chr1_2:63772674-63772693 None:intergenic 40.0%
!!! TGTTAGTTTTGCACTAGAGG+TGG + chr1_2:63772703-63772722 None:intergenic 40.0%
!!! GGATGTTAGTTTTGCACTAG+AGG + chr1_2:63772706-63772725 None:intergenic 40.0%
CACATATACTTTGGCAGGAT+AGG + chr1_2:63772841-63772860 None:intergenic 40.0%
! TACCAAACGTTTGGAATGGA+GGG - chr1_2:63773127-63773146 Msa0084380:CDS 40.0%
CACTTTCCTGATCATCCAAA+AGG - chr1_2:63773205-63773224 Msa0084380:intron 40.0%
AATAATTACCAGCGGGCATT+GGG + chr1_2:63773258-63773277 None:intergenic 40.0%
AAATAATTACCAGCGGGCAT+TGG + chr1_2:63773259-63773278 None:intergenic 40.0%
TGGTTGTTGCTACTGATATG+TGG - chr1_2:63773616-63773635 Msa0084380:intron 40.0%
ACATGAATGTGACTTCTACC+TGG - chr1_2:63773717-63773736 Msa0084380:intron 40.0%
ATGCAAACGTGTATCAACTG+AGG - chr1_2:63773837-63773856 Msa0084380:intron 40.0%
TGCAAACGTGTATCAACTGA+GGG - chr1_2:63773838-63773857 Msa0084380:intron 40.0%
CTAAACTAGCACACCCAAAT+TGG - chr1_2:63774064-63774083 Msa0084380:intron 40.0%
! ATTCTCTCTGGTGCCAATTT+GGG + chr1_2:63774080-63774099 None:intergenic 40.0%
ATTACTGCTTGATCTTTCGC+GGG + chr1_2:63774472-63774491 None:intergenic 40.0%
GTAGCATCTATTCAATGCTC+TGG - chr1_2:63774632-63774651 Msa0084380:intron 40.0%
CAATGCTCTGGCAAATTCTT+TGG - chr1_2:63774644-63774663 Msa0084380:intron 40.0%
TCTAAATGGTGCCTAGTTGA+TGG - chr1_2:63774757-63774776 Msa0084380:intron 40.0%
TTGATGGAAACTGGTAGGAA+TGG - chr1_2:63774773-63774792 Msa0084380:intron 40.0%
GAAATAGAGAGATCCACCAA+GGG + chr1_2:63775002-63775021 None:intergenic 40.0%
AGAAATAGAGAGATCCACCA+AGG + chr1_2:63775003-63775022 None:intergenic 40.0%
TGCTAACTTCTCTTTGCTAC+AGG - chr1_2:63775171-63775190 Msa0084380:intron 40.0%
TGATTGCCTTTCTCAGCTAA+AGG - chr1_2:63775225-63775244 Msa0084380:intron 40.0%
AAAGGGAACACGTTCCTTTA+TGG - chr1_2:63775458-63775477 Msa0084380:intron 40.0%
AGAGAAATTCCAACAGTTCC+AGG - chr1_2:63775864-63775883 Msa0084380:intron 40.0%
AAAAAACCACCTGGAACTGT+TGG + chr1_2:63775876-63775895 None:intergenic 40.0%
AAGAGGACAAAAAAACCACC+TGG + chr1_2:63775885-63775904 None:intergenic 40.0%
!! AAATCAGAACCAGAAGTGCT+AGG + chr1_2:63776157-63776176 None:intergenic 40.0%
CAACCACCTCTTCTTCATAT+TGG + chr1_2:63776921-63776940 None:intergenic 40.0%
GGTTGCAAACAACTTCTAGA+AGG - chr1_2:63776936-63776955 Msa0084380:intron 40.0%
! GCAAACAACTTCTAGAAGGA+AGG - chr1_2:63776940-63776959 Msa0084380:intron 40.0%
!! TGGCATGTCTTGGTTTGTTA+GGG - chr1_2:63777002-63777021 Msa0084380:intron 40.0%
!! CATTGCTTTTGTGCAAACTG+AGG + chr1_2:63777158-63777177 None:intergenic 40.0%
TGTTATGGACAGTCATTGAG+AGG + chr1_2:63777216-63777235 None:intergenic 40.0%
GACTGTCCATAACATGTACT+CGG - chr1_2:63777222-63777241 Msa0084380:intron 40.0%
!! TGTACTCGGTATTTTTGCGT+AGG - chr1_2:63777236-63777255 Msa0084380:intron 40.0%
GAAACTGGGGAAAAACGCAA+GGG - chr1_2:63771376-63771395 Msa0084380:three_prime_UTR 45.0%
TGGCTGAAAAAGATGCAGGT+TGG - chr1_2:63771464-63771483 Msa0084380:three_prime_UTR 45.0%
!!! CGGGTTTTAGTTTCCATCCA+TGG - chr1_2:63772514-63772533 Msa0084380:intron 45.0%
TGTACACAAGTGCCTCATCA+AGG + chr1_2:63772612-63772631 None:intergenic 45.0%
GGGGTATAGTTGGGAAACAA+AGG - chr1_2:63773042-63773061 Msa0084380:intron 45.0%
! CTACCAAACGTTTGGAATGG+AGG - chr1_2:63773126-63773145 Msa0084380:CDS 45.0%
TAGGCCTCACATTTGCATTC+AGG - chr1_2:63773332-63773351 Msa0084380:intron 45.0%
AGGCCTCACATTTGCATTCA+GGG - chr1_2:63773333-63773352 Msa0084380:intron 45.0%
TTGCCCTGAATGCAAATGTG+AGG + chr1_2:63773339-63773358 None:intergenic 45.0%
GGACATGAAAGAGCCAGAAA+GGG + chr1_2:63773590-63773609 None:intergenic 45.0%
AGGACATGAAAGAGCCAGAA+AGG + chr1_2:63773591-63773610 None:intergenic 45.0%
GCTCTTTCATGTCCTAGTCA+TGG - chr1_2:63773596-63773615 Msa0084380:intron 45.0%
CAGTAGCAACAACCATGACT+AGG + chr1_2:63773611-63773630 None:intergenic 45.0%
TGAATGTGACTTCTACCTGG+TGG - chr1_2:63773720-63773739 Msa0084380:intron 45.0%
AAGAATCTGATCACACCACC+AGG + chr1_2:63773738-63773757 None:intergenic 45.0%
GCAAACGTGTATCAACTGAG+GGG - chr1_2:63773839-63773858 Msa0084380:intron 45.0%
! GATTCTCTCTGGTGCCAATT+TGG + chr1_2:63774081-63774100 None:intergenic 45.0%
ACCAGAGAGAATCGAACCTA+AGG - chr1_2:63774088-63774107 Msa0084380:intron 45.0%
! TTGAAGTTTGCTCCTCCTCA+AGG + chr1_2:63774114-63774133 None:intergenic 45.0%
TTGAGGAGGAGCAAACTTCA+AGG - chr1_2:63774113-63774132 Msa0084380:intron 45.0%
!! AGAGTAAGTGGTGTTGGCTT+GGG + chr1_2:63774140-63774159 None:intergenic 45.0%
!! AAGAGTAAGTGGTGTTGGCT+TGG + chr1_2:63774141-63774160 None:intergenic 45.0%
AAGAGTAGAGATGTCCATCC+AGG + chr1_2:63774355-63774374 None:intergenic 45.0%
TTAACCCACACCCACTTAGT+GGG - chr1_2:63774521-63774540 Msa0084380:intron 45.0%
TTATCCCACTAAGTGGGTGT+GGG + chr1_2:63774528-63774547 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_2:63774534-63774553 None:intergenic 45.0%
! ACAAGCCTTATCCCACTAAG+TGG + chr1_2:63774535-63774554 None:intergenic 45.0%
ATCCCTGAAATATAGGTGGC+TGG - chr1_2:63774673-63774692 Msa0084380:intron 45.0%
TCCCTGAAATATAGGTGGCT+GGG - chr1_2:63774674-63774693 Msa0084380:intron 45.0%
ACCCAGCCACCTATATTTCA+GGG + chr1_2:63774678-63774697 None:intergenic 45.0%
AACCCAGCCACCTATATTTC+AGG + chr1_2:63774679-63774698 None:intergenic 45.0%
CCTACCAGTTTCCATCAACT+AGG + chr1_2:63774771-63774790 None:intergenic 45.0%
!! CCTAGTTGATGGAAACTGGT+AGG - chr1_2:63774768-63774787 Msa0084380:intron 45.0%
! CAGTGACTCTTTTGCAGAAG+AGG - chr1_2:63774973-63774992 Msa0084380:intron 45.0%
TTTGCAGAAGAGGAAACCCT+TGG - chr1_2:63774983-63775002 Msa0084380:intron 45.0%
!!! TATCTTTTCTAGCTGGCCCA+TGG - chr1_2:63775099-63775118 Msa0084380:intron 45.0%
TGCTACAGGATGTGAGTATC+AGG - chr1_2:63775185-63775204 Msa0084380:intron 45.0%
TATCAGGCTCGAAGAACGAA+AGG - chr1_2:63775201-63775220 Msa0084380:intron 45.0%
CGTTCTCCTTTAGCTGAGAA+AGG + chr1_2:63775234-63775253 None:intergenic 45.0%
ACATGAGGAAAGATCTGCTC+AGG - chr1_2:63775753-63775772 Msa0084380:intron 45.0%
GAAATTCCAACAGTTCCAGG+TGG - chr1_2:63775867-63775886 Msa0084380:intron 45.0%
! GTCGTCCTTTTCCATCATTG+TGG - chr1_2:63776407-63776426 Msa0084380:CDS 45.0%
TCGGCTCCAATATGAAGAAG+AGG - chr1_2:63776912-63776931 Msa0084380:intron 45.0%
GCTCCAATATGAAGAAGAGG+TGG - chr1_2:63776915-63776934 Msa0084380:intron 45.0%
!! GTGGCATGTCTTGGTTTGTT+AGG - chr1_2:63777001-63777020 Msa0084380:intron 45.0%
! CTCTACTACCCCGTTTTCAA+TGG + chr1_2:63777086-63777105 None:intergenic 45.0%
! AATGAGACACGCGATTTTGC+CGG - chr1_2:63777174-63777193 Msa0084380:intron 45.0%
! ATTTTGCCGGAAACTTGGCT+TGG - chr1_2:63777187-63777206 Msa0084380:intron 45.0%
! TTTTGCCGGAAACTTGGCTT+GGG - chr1_2:63777188-63777207 Msa0084380:intron 45.0%
! TTTTGCGTAGGCAGTGTGTT+TGG - chr1_2:63777248-63777267 Msa0084380:CDS 45.0%
!!! AGGCAGTGTGTTTGGTGTTT+TGG - chr1_2:63777256-63777275 Msa0084380:CDS 45.0%
!!! GGCAGTGTGTTTGGTGTTTT+GGG - chr1_2:63777257-63777276 Msa0084380:CDS 45.0%
!!! GCAGTGTGTTTGGTGTTTTG+GGG - chr1_2:63777258-63777277 Msa0084380:CDS 45.0%
!!! CAGTGTGTTTGGTGTTTTGG+GGG - chr1_2:63777259-63777278 Msa0084380:CDS 45.0%
!! TATTCTATAATATATAAATA+GGG - chr1_2:63776577-63776596 Msa0084380:intron 5.0%
! TTCGCATGTAGTGGAACACC+TGG - chr1_2:63772488-63772507 Msa0084380:intron 50.0%
! TGTAGTGGAACACCTGGTCA+CGG - chr1_2:63772494-63772513 Msa0084380:intron 50.0%
GGAAACTAAAACCCGTGACC+AGG + chr1_2:63772509-63772528 None:intergenic 50.0%
AGATGAAACCCAACCCACCA+AGG + chr1_2:63772582-63772601 None:intergenic 50.0%
CATCTTGCACTGCCTTGATG+AGG - chr1_2:63772597-63772616 Msa0084380:intron 50.0%
TGAAGAAGGGTAGCATGTCC+TGG - chr1_2:63772653-63772672 Msa0084380:intron 50.0%
CTCCCTCCATTCCAAACGTT+TGG + chr1_2:63773132-63773151 None:intergenic 50.0%
TCAGGGCAATTACTCTCCTC+TGG - chr1_2:63773350-63773369 Msa0084380:intron 50.0%
CAACTGAGGGGCAAAACTTG+AGG - chr1_2:63773851-63773870 Msa0084380:intron 50.0%
TGAGGGGCAAAACTTGAGGA+TGG - chr1_2:63773855-63773874 Msa0084380:intron 50.0%
GCCTTAGGTTCGATTCTCTC+TGG + chr1_2:63774092-63774111 None:intergenic 50.0%
GAATCGAACCTAAGGCCTTG+AGG - chr1_2:63774096-63774115 Msa0084380:intron 50.0%
AAAGACAGGGTGAGCATTCC+TGG - chr1_2:63774334-63774353 Msa0084380:intron 50.0%
GTTAACCCACACCCACTTAG+TGG - chr1_2:63774520-63774539 Msa0084380:intron 50.0%
CTTATCCCACTAAGTGGGTG+TGG + chr1_2:63774529-63774548 None:intergenic 50.0%
CACACCCACTTAGTGGGATA+AGG - chr1_2:63774527-63774546 Msa0084380:intron 50.0%
!! GGTGCCTAGTTGATGGAAAC+TGG - chr1_2:63774764-63774783 Msa0084380:intron 50.0%
TGAGCAGCAATATGCCCAGA+AGG - chr1_2:63775581-63775600 Msa0084380:intron 50.0%
CGTTTGCAGCTGACAACTGA+TGG - chr1_2:63775841-63775860 Msa0084380:intron 50.0%
TTGGCTGATCCTAGCACTTC+TGG - chr1_2:63776145-63776164 Msa0084380:intron 50.0%
!! TCTGGACTAGTGGCATGTCT+TGG - chr1_2:63776992-63777011 Msa0084380:intron 50.0%
! ACGCGATTTTGCCGGAAACT+TGG - chr1_2:63777182-63777201 Msa0084380:intron 50.0%
! GTAGTGGAACACCTGGTCAC+GGG - chr1_2:63772495-63772514 Msa0084380:intron 55.0%
GCACTTGTGTACAGAGCTGC+TGG - chr1_2:63772619-63772638 Msa0084380:intron 55.0%
!! CGGGCATTGGGCTTCCAAAT+AGG + chr1_2:63773246-63773265 None:intergenic 55.0%
TCGAACCTAAGGCCTTGAGG+AGG - chr1_2:63774099-63774118 Msa0084380:intron 55.0%
TTGCTCCTCCTCAAGGCCTT+AGG + chr1_2:63774107-63774126 None:intergenic 55.0%
ACAGGGTGAGCATTCCTGGA+TGG - chr1_2:63774338-63774357 Msa0084380:intron 55.0%
ACTGCTTGATCTTTCGCGGG+AGG + chr1_2:63774469-63774488 None:intergenic 55.0%
GCAGAAGAGGAAACCCTTGG+TGG - chr1_2:63774986-63775005 Msa0084380:intron 55.0%
GGGAGGGGTGAAACAAATGC+AGG + chr1_2:63775364-63775383 None:intergenic 55.0%
! CAGCTTTTGAGCTGTGGGAG+GGG + chr1_2:63775379-63775398 None:intergenic 55.0%
! CCAGCTTTTGAGCTGTGGGA+GGG + chr1_2:63775380-63775399 None:intergenic 55.0%
CCTCCCACAGCTCAAAAGCT+GGG - chr1_2:63775378-63775397 Msa0084380:intron 55.0%
! GAGCCCAGCTTTTGAGCTGT+GGG + chr1_2:63775384-63775403 None:intergenic 55.0%
! AGAGCCCAGCTTTTGAGCTG+TGG + chr1_2:63775385-63775404 None:intergenic 55.0%
CGAGCGCTTGAAGAAACAGC+TGG - chr1_2:63776785-63776804 Msa0084380:intron 55.0%
ATCGCTATGCCGGTCACTTC+AGG - chr1_2:63776839-63776858 Msa0084380:intron 55.0%
TCCTCTCTGCCTGAAGTGAC+CGG + chr1_2:63776851-63776870 None:intergenic 55.0%
AGGCTCCCAAGCCAAGTTTC+CGG + chr1_2:63777196-63777215 None:intergenic 55.0%
TTTGGAAGCCCAATGCCCGC+TGG - chr1_2:63773247-63773266 Msa0084380:intron 60.0%
GCTTGATCTTTCGCGGGAGG+TGG + chr1_2:63774466-63774485 None:intergenic 60.0%
CCCTCCCACAGCTCAAAAGC+TGG - chr1_2:63775377-63775396 Msa0084380:intron 60.0%
! CCCAGCTTTTGAGCTGTGGG+AGG + chr1_2:63775381-63775400 None:intergenic 60.0%
GCCGGTCACTTCAGGCAGAG+AGG - chr1_2:63776847-63776866 Msa0084380:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 63771376 63777352 63771376 ID=Msa0084380;Name=Msa0084380
chr1_2 mRNA 63771376 63777352 63771376 ID=Msa0084380-mRNA-1;Parent=Msa0084380;Name=Msa0084380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.75|0.66|1|1|1|9|426|287
chr1_2 exon 63771376 63771945 63771376 ID=Msa0084380-mRNA-1:exon:21400;Parent=Msa0084380-mRNA-1
chr1_2 exon 63772193 63772288 63772193 ID=Msa0084380-mRNA-1:exon:21399;Parent=Msa0084380-mRNA-1
chr1_2 exon 63772411 63772467 63772411 ID=Msa0084380-mRNA-1:exon:21398;Parent=Msa0084380-mRNA-1
chr1_2 exon 63772843 63773025 63772843 ID=Msa0084380-mRNA-1:exon:21397;Parent=Msa0084380-mRNA-1
chr1_2 exon 63773126 63773192 63773126 ID=Msa0084380-mRNA-1:exon:21396;Parent=Msa0084380-mRNA-1
chr1_2 exon 63773471 63773535 63773471 ID=Msa0084380-mRNA-1:exon:21395;Parent=Msa0084380-mRNA-1
chr1_2 exon 63774819 63774896 63774819 ID=Msa0084380-mRNA-1:exon:21394;Parent=Msa0084380-mRNA-1
chr1_2 exon 63776388 63776455 63776388 ID=Msa0084380-mRNA-1:exon:21393;Parent=Msa0084380-mRNA-1
chr1_2 exon 63777247 63777352 63777247 ID=Msa0084380-mRNA-1:exon:21392;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63777247 63777352 63777247 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63776388 63776455 63776388 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63774819 63774896 63774819 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63773471 63773535 63773471 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63773126 63773192 63773126 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63772843 63773025 63772843 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63772411 63772467 63772411 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63772193 63772288 63772193 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 CDS 63771802 63771945 63771802 ID=Msa0084380-mRNA-1:cds;Parent=Msa0084380-mRNA-1
chr1_2 three_prime_UTR 63771376 63771801 63771376 ID=Msa0084380-mRNA-1:three_prime_utr;Parent=Msa0084380-mRNA-1
Gene Sequence

>Msa0084380

GAAACTGGGGAAAAACGCAAGGGTTCAAAGCGTGCACTTAAATCAGAAAAGGAGCTCTTAGAGTTTTCACTCAAGTATCAACAAGTATTGGCTGAAAAAGATGCAGCTTTTGCCGTCAGAGATAAGCTTGAGTCACTATGCAGGGAGCTACAGCGTCAAAATAAAATGCTGATGGAAGAATGCAAACGTGTATCAACTGAGGGGCAAAACTTGAGGATGGACTTGTCAGCTAAGTTCCAAGATGCAATCAAGGATGTGAGTATCAGGCTCGAAGAACGAAAGGATGATTGCCTTTCTCAGCTAAAGGAGAACGACATGTTAAGAAACAATTTAAAGCAACTTGCTGAGCAATATGAACTATCTGAGCAGCAATATGCCCAGAAGTTGAAGCAAAAGTCATTGGAGCTACAGATTGCAGAATTAAAAATTAAGCAACATGAGGAAAGATCTGCTCAGGAACAGTCACAAATGAAATTATATGCAGAACAAGTATCTCAGTTATTGGCGACTGAGAAGAATTTGCGTTTGCAGCTGACAACTGATGGAGAGAAATTCCAACAGTTCCAGGAAGCATTGACAAAGAGCAATGATGTATTTGAAACATTTAAACAAGAGATTGAGAAGATGGCAAAATCAATGAAGGAACTCAAGAAGGAGAATCAATTTTTGAAGAGTAAATCAGAAAAGTCTGATATTACACTTATAGAGTTAGTTGACGAGCGCGAGCGCTTGAAGAAACAGCTGGAGAAAACGAAAAATCAAAAAGAAAAACTTGAATCGCTATGCCGGTCACTTCAGGCAGAGAGGAAGCAAAGTTTATCCGAGAACAAGAGTAATAATAGTAACAACTCGGCTCCAATATGA

Protein sequence

>Msa0084380

ETGEKRKGSKRALKSEKELLEFSLKYQQVLAEKDAAFAVRDKLESLCRELQRQNKMLMEECKRVSTEGQNLRMDLSAKFQDAIKDVSIRLEERKDDCLSQLKENDMLRNNLKQLAEQYELSEQQYAQKLKQKSLELQIAELKIKQHEERSAQEQSQMKLYAEQVSQLLATEKNLRLQLTTDGEKFQQFQEALTKSNDVFETFKQEIEKMAKSMKELKKENQFLKSKSEKSDITLIELVDERERLKKQLEKTKNQKEKLESLCRSLQAERKQSLSENKSNNSNNSAPI*