AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035480 MtrunA17_Chr7g0258941 96.703 273 9 0 17 289 38 310 0.0 562
Msa1035480 MtrunA17_Chr1g0175721 83.895 267 43 0 23 289 43 309 2.56e-175 486
Msa1035480 MtrunA17_Chr1g0147041 72.695 282 74 1 7 288 40 318 2.47e-155 436
Msa1035480 MtrunA17_Chr3g0126851 75.000 264 66 0 25 288 47 310 4.77e-155 435
Msa1035480 MtrunA17_Chr8g0346801 74.713 261 66 0 28 288 34 294 1.98e-153 431
Msa1035480 MtrunA17_Chr3g0083571 72.161 273 75 1 16 288 32 303 1.46e-152 428
Msa1035480 MtrunA17_Chr7g0275701 74.806 258 65 0 31 288 54 311 1.78e-150 424
Msa1035480 MtrunA17_Chr8g0352701 72.656 256 70 0 33 288 48 303 4.32e-148 417
Msa1035480 MtrunA17_Chr4g0051351 28.972 214 139 5 37 249 96 297 1.79e-21 92.4
Msa1035480 MtrunA17_Chr5g0433631 25.746 268 185 6 18 285 13 266 5.87e-21 91.3
Msa1035480 MtrunA17_Chr7g0223111 26.316 209 144 4 38 246 37 235 6.97e-19 85.5
Msa1035480 MtrunA17_Chr5g0428191 24.903 257 170 6 37 289 10 247 2.97e-18 83.2
Msa1035480 MtrunA17_Chr5g0424971 30.303 132 86 4 38 168 18 144 3.97e-17 80.1
Msa1035480 MtrunA17_Chr5g0433541 28.972 214 132 6 38 246 11 209 1.24e-16 77.4
Msa1035480 MtrunA17_Chr5g0433551 28.972 214 132 6 38 246 11 209 1.24e-16 77.4
Msa1035480 MtrunA17_Chr5g0433411 25.532 235 161 6 51 285 47 267 2.36e-16 78.2
Msa1035480 MtrunA17_Chr5g0433531 27.419 248 161 5 34 281 7 235 2.73e-16 77.8
Msa1035480 MtrunA17_Chr2g0298951 32.743 113 71 2 54 163 9 119 1.19e-14 72.8
Msa1035480 MtrunA17_Chr5g0433661 27.273 209 142 5 38 246 45 243 9.11e-14 70.9
Msa1035480 MtrunA17_Chr7g0259431 29.139 151 101 3 54 204 9 153 2.48e-13 68.9
Msa1035480 MtrunA17_Chr5g0433521 27.815 151 103 3 54 204 23 167 8.91e-13 67.4
Msa1035480 MtrunA17_Chr1g0169381 31.624 117 77 2 37 153 10 123 1.86e-12 64.3
Msa1035480 MtrunA17_Chr5g0433731 24.691 243 148 9 46 281 2 216 5.75e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035480 AT3G58040.1 82.593 270 46 1 20 289 40 308 2.10e-173 481
Msa1035480 AT3G58040.3 82.593 270 46 1 20 289 40 308 2.10e-173 481
Msa1035480 AT2G41980.1 83.012 259 44 0 31 289 47 305 1.22e-169 472
Msa1035480 AT3G61790.1 76.357 258 61 0 31 288 53 310 5.93e-155 436
Msa1035480 AT4G27880.1 72.348 264 73 0 25 288 48 311 6.32e-151 425
Msa1035480 AT5G53360.1 75.369 203 50 0 86 288 15 217 8.06e-119 340
Msa1035480 AT5G53360.3 75.369 203 50 0 86 288 15 217 8.06e-119 340
Msa1035480 AT3G58040.2 80.606 165 31 1 20 184 40 203 7.55e-98 287
Msa1035480 AT3G13672.1 50.495 202 94 2 90 288 13 211 1.42e-70 217
Msa1035480 AT3G13672.2 44.978 229 93 3 90 288 13 238 6.40e-65 204
Msa1035480 AT5G53360.2 74.286 105 27 0 184 288 60 164 1.93e-56 180
Msa1035480 AT5G37870.1 28.829 222 148 6 37 255 41 255 1.29e-23 97.8
Msa1035480 AT5G37930.1 37.692 130 78 2 37 166 109 235 6.36e-21 91.7
Msa1035480 AT5G37890.1 26.721 247 166 6 37 281 47 280 7.30e-20 87.4
Msa1035480 AT5G62800.1 26.953 256 157 8 37 281 39 275 5.58e-18 83.2
Msa1035480 AT5G37910.1 25.692 253 177 6 37 288 34 276 1.44e-17 81.3
Msa1035480 AT5G62800.2 27.103 214 132 5 37 240 39 238 2.40e-17 80.9
Msa1035480 AT1G66620.1 35.897 117 73 1 37 153 40 154 5.69e-17 80.1
Msa1035480 AT1G66630.1 34.667 150 85 4 17 156 18 164 9.25e-16 76.3
Msa1035480 AT1G66660.2 35.714 112 70 1 37 148 102 211 2.67e-15 75.5
Msa1035480 AT1G66650.1 32.593 135 86 3 37 168 82 214 4.39e-15 74.7
Msa1035480 AT1G66610.2 36.634 101 61 1 3 100 120 220 5.70e-13 67.4

Find 100 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCCTTCTTACGGTTTA+TGG 0.117780 7_1:+71286082 Msa1035480:CDS
TGCGAATCACCGGTCGTATA+TGG 0.237311 7_1:+71286297 Msa1035480:CDS
TTATTGTATGAAGGATATTT+TGG 0.246908 7_1:+71286580 Msa1035480:three_prime_UTR
AAACTCAAAGCTAAAGAAAT+TGG 0.250381 7_1:+71284250 Msa1035480:five_prime_UTR
GTGTTTGTTGGTATCGATTA+TGG 0.251697 7_1:-71282836 None:intergenic
TTCAATTCCACACATCTTAG+AGG 0.289979 7_1:+71286479 Msa1035480:three_prime_UTR
GGAGAAAGTGGCGGAATCTT+TGG 0.289986 7_1:+71284945 Msa1035480:CDS
AAGTGTTGGCCAGAGACTTT+TGG 0.299363 7_1:+71284005 Msa1035480:five_prime_UTR
GACAGGTGGGACAGAGATTA+TGG 0.312010 7_1:-71284888 None:intergenic
CATATGGGCGCAAACTTATA+TGG 0.315205 7_1:+71286153 Msa1035480:CDS
AGCTTAGAAGTCGGTGCATA+TGG 0.322324 7_1:+71286137 Msa1035480:CDS
ATGGCCTTCTTACGGTTTAT+GGG 0.324454 7_1:+71286083 Msa1035480:CDS
TTTCTTGACTCGCTGGATCT+TGG 0.328460 7_1:+71283947 Msa1035480:five_prime_UTR
CCCACCTGTCACCATGATCT+TGG 0.343411 7_1:+71284901 Msa1035480:CDS
AATCCCAGTGTTGGATTGAA+TGG 0.350825 7_1:+71284412 Msa1035480:CDS
GCATTTCTGTTTGCACTTTG+AGG 0.351473 7_1:+71286031 Msa1035480:CDS
TGTTTAAGCTTTGCATAGTA+AGG 0.352415 7_1:-71285012 None:intergenic
ACCATGATCTTGGGAATATA+AGG 0.354435 7_1:+71284911 Msa1035480:CDS
CACTTTGAGGCTTTCCAGCT+TGG 0.356658 7_1:+71286044 Msa1035480:CDS
GAATATAAGGTGTTTGGCTC+TGG 0.367722 7_1:+71284924 Msa1035480:CDS
TTGACTTCAGATTATGAAAC+AGG 0.369439 7_1:+71284348 Msa1035480:exon
TGTAAGTGTACAGTTAATCT+TGG 0.383421 7_1:-71284388 None:intergenic
TCAAATTATTTATTGTATGA+AGG 0.396071 7_1:+71286571 Msa1035480:three_prime_UTR
GAACATAACGTATGGCCATT+TGG 0.409073 7_1:-71284847 None:intergenic
TATCCTAGGGAAACTCTATA+AGG 0.411434 7_1:+71284056 Msa1035480:five_prime_UTR
TCTTGGGAATATAAGGTGTT+TGG 0.412899 7_1:+71284918 Msa1035480:CDS
CCACCTGTCACCATGATCTT+GGG 0.439936 7_1:+71284902 Msa1035480:CDS
CATTGTATAGAGCTTATTAC+GGG 0.448456 7_1:+71286383 Msa1035480:three_prime_UTR
TCATTGTATAGAGCTTATTA+CGG 0.450666 7_1:+71286382 Msa1035480:three_prime_UTR
CCTTTAGATCGGATCAGAAA+TGG 0.457706 7_1:+71284281 Msa1035480:five_prime_UTR
CCATACAATTGTCCCTATGC+TGG 0.460910 7_1:+71285057 Msa1035480:CDS
TACTCGTGCTAGATTATCCT+AGG 0.462366 7_1:+71284042 Msa1035480:five_prime_UTR
CCATTTCTGATCCGATCTAA+AGG 0.471216 7_1:-71284281 None:intergenic
AAGCAGTGCACCTGGTGAAT+TGG 0.478324 7_1:-71284511 None:intergenic
CCTTGCAGATATCAGAGTCT+AGG 0.480797 7_1:+71284973 Msa1035480:CDS
CACTTACAAAATCCCAGTGT+TGG 0.483896 7_1:+71284403 Msa1035480:CDS
CCAGCATAGGGACAATTGTA+TGG 0.489704 7_1:-71285057 None:intergenic
GGATCTGAGTGCTCCGTGAT+GGG 0.492368 7_1:+71285078 Msa1035480:CDS
ATCTTCTTTCCATATACGAC+CGG 0.495873 7_1:-71286306 None:intergenic
CATTCACGCCCAAAAGTCTC+TGG 0.496141 7_1:-71284014 None:intergenic
CTTAAACATGAGCAAAATTG+TGG 0.498784 7_1:+71285027 Msa1035480:CDS
TGGATCTGAGTGCTCCGTGA+TGG 0.504556 7_1:+71285077 Msa1035480:CDS
TCAGAAATGGCTCCGGGAGG+AGG 0.504929 7_1:+71284294 Msa1035480:five_prime_UTR
TTATATGGCAAGGAATTCCT+AGG 0.506193 7_1:+71286168 Msa1035480:CDS
TACAATTTGAACATAACGTA+TGG 0.506717 7_1:-71284855 None:intergenic
AAAGTTAGAGATAGTCAAGA+TGG 0.510900 7_1:+71286212 Msa1035480:CDS
TGACTGTCGCGTATGCTCCT+AGG 0.511842 7_1:-71286185 None:intergenic
ATCTCTTGTTGATCATCTCA+AGG 0.513200 7_1:+71285110 Msa1035480:CDS
ATCGGATCAGAAATGGCTCC+GGG 0.513632 7_1:+71284288 Msa1035480:five_prime_UTR
CAGTGCACCTGGTGAATTGG+AGG 0.518998 7_1:-71284508 None:intergenic
ACCTTATATTCCCAAGATCA+TGG 0.520727 7_1:-71284912 None:intergenic
GATCGGATCAGAAATGGCTC+CGG 0.522089 7_1:+71284287 Msa1035480:five_prime_UTR
AAACAACAACGTTGTTGTGT+TGG 0.523776 7_1:+71282795 Msa1035480:five_prime_UTR
GTTTAAGCTTTGCATAGTAA+GGG 0.527406 7_1:-71285011 None:intergenic
AAACTGGAGCTGTACCAAGC+TGG 0.527478 7_1:-71286058 None:intergenic
TCCACACATCTTAGAGGTGA+GGG 0.527827 7_1:+71286485 Msa1035480:three_prime_UTR
CTTTCCATTCAATCCAACAC+TGG 0.529737 7_1:-71284416 None:intergenic
TGGAAAGAAATCCTTTAGAT+CGG 0.531076 7_1:+71284270 Msa1035480:five_prime_UTR
TGTGTGTTTCAGTGTCCAAA+TGG 0.537348 7_1:+71284832 Msa1035480:intron
TTGAGATGATCAACAAGAGA+TGG 0.537565 7_1:-71285108 None:intergenic
ATTTCTTACATGTTAAGTGT+TGG 0.537594 7_1:+71283991 Msa1035480:five_prime_UTR
GTGTTTGGCTCTGGAGAAAG+TGG 0.543736 7_1:+71284933 Msa1035480:CDS
TTTGACATATCGATGATTGA+AGG 0.543895 7_1:-71285166 None:intergenic
AATGGTGTGCATGACTTACT+CGG 0.545764 7_1:+71284457 Msa1035480:CDS
CTTGCAGATATCAGAGTCTA+GGG 0.551230 7_1:+71284974 Msa1035480:CDS
CACGGAACTAGTTCAAAGAA+TGG 0.551902 7_1:+71284439 Msa1035480:CDS
ATTCCCAAGATCATGGTGAC+AGG 0.559471 7_1:-71284905 None:intergenic
CCCAAGATCATGGTGACAGG+TGG 0.563063 7_1:-71284902 None:intergenic
GAGTTGAAATTGCGAATCAC+CGG 0.566590 7_1:+71286287 Msa1035480:CDS
TTTCCATTCAATCCAACACT+GGG 0.570775 7_1:-71284415 None:intergenic
ATCGCCCATAAACCGTAAGA+AGG 0.570793 7_1:-71286087 None:intergenic
CACAAGGTTGACATGCATGA+TGG 0.576711 7_1:+71285138 Msa1035480:CDS
TTCAGTTACAGCTTAGAAGT+CGG 0.578117 7_1:+71286128 Msa1035480:CDS
TCTTTGAAAATACCTCCTCC+CGG 0.578930 7_1:-71284306 None:intergenic
TAAAAGTGAAAGAAAGCTGA+AGG 0.579210 7_1:-71286523 None:intergenic
AAAACGAAGTCACAATTCAA+AGG 0.583618 7_1:+71286625 Msa1035480:three_prime_UTR
TTCCACACATCTTAGAGGTG+AGG 0.584877 7_1:+71286484 Msa1035480:three_prime_UTR
TGGTTGGATTGATGGTTCCA+AGG 0.587540 7_1:+71283266 Msa1035480:five_prime_UTR
TTTCATAATCTGAAGTCAAG+AGG 0.592761 7_1:-71284344 None:intergenic
ATACCTTATAGAGTTTCCCT+AGG 0.597802 7_1:-71284059 None:intergenic
GCTTAGAAGTCGGTGCATAT+GGG 0.598441 7_1:+71286138 Msa1035480:CDS
GAGCACTCAGATCCAGCATA+GGG 0.606589 7_1:-71285069 None:intergenic
GATGTATCCTCCAATTCACC+AGG 0.614890 7_1:+71284501 Msa1035480:CDS
GGGCGCAAACTTATATGGCA+AGG 0.619069 7_1:+71286158 Msa1035480:CDS
GGAGCACTCAGATCCAGCAT+AGG 0.620419 7_1:-71285070 None:intergenic
ACCCTCACCTCTAAGATGTG+TGG 0.620792 7_1:-71286486 None:intergenic
CCAAGATCATGGTGACAGGT+GGG 0.628103 7_1:-71284901 None:intergenic
AGATGGAATGTCGCCCATCA+CGG 0.630084 7_1:-71285091 None:intergenic
TAATAATGTATTAAGCGTGA+AGG 0.632431 7_1:+71286347 Msa1035480:three_prime_UTR
AAGATGGACTAATAATTCAG+AGG 0.639261 7_1:+71286228 Msa1035480:CDS
GTTGGATTGAATGGAAAGCA+CGG 0.640812 7_1:+71284421 Msa1035480:CDS
TTCAGATTATGAAACAGGCA+AGG 0.651216 7_1:+71284353 Msa1035480:exon
ATGGTGTGCATGACTTACTC+GGG 0.659438 7_1:+71284458 Msa1035480:CDS
CCTAGACTCTGATATCTGCA+AGG 0.660946 7_1:-71284973 None:intergenic
TCATCTCAAGGATGAACACA+AGG 0.664179 7_1:+71285122 Msa1035480:CDS
ACTCGTGCTAGATTATCCTA+GGG 0.666126 7_1:+71284043 Msa1035480:five_prime_UTR
TTTGGCTCTGGAGAAAGTGG+CGG 0.674324 7_1:+71284936 Msa1035480:CDS
ATGAAGTTGAAAATGCCACA+TGG 0.708825 7_1:+71285199 Msa1035480:CDS
ACTTACAGTGAGCATCCATG+TGG 0.726222 7_1:-71285214 None:intergenic
GGATCAGAAATGGCTCCGGG+AGG 0.729551 7_1:+71284291 Msa1035480:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAAACAAATAAAAATT+CGG - chr7_1:71283339-71283358 None:intergenic 10.0%
!!! TTTATTTGTTTCTATAATTT+TGG + chr7_1:71283343-71283362 Msa1035480:intron 10.0%
!! ATAAAAACATAATGCAAAAA+TGG - chr7_1:71282918-71282937 None:intergenic 15.0%
!! GCAAAATTAAATTATATTTG+TGG + chr7_1:71283760-71283779 Msa1035480:intron 15.0%
!!! ATGTAAGAAATAACTATTTT+TGG - chr7_1:71283982-71284001 None:intergenic 15.0%
!!! ATTAAAAAGTATTGTAATCT+TGG - chr7_1:71285403-71285422 None:intergenic 15.0%
!! TACTTCAAATATTTATTAGT+TGG - chr7_1:71285928-71285947 None:intergenic 15.0%
!! TCAAATTATTTATTGTATGA+AGG + chr7_1:71286571-71286590 Msa1035480:three_prime_UTR 15.0%
!!! ATTTGATATTTTGTTTGACA+TGG + chr7_1:71283021-71283040 Msa1035480:intron 20.0%
!!! TTTTTGTTTTTTCCTTTGAT+TGG + chr7_1:71283061-71283080 Msa1035480:intron 20.0%
!! TCAAATTGTGATTCTATTTA+TGG + chr7_1:71283145-71283164 Msa1035480:intron 20.0%
!!! ATAATTTTGGTTCTGTTTTA+TGG + chr7_1:71283356-71283375 Msa1035480:intron 20.0%
!! ATTTAAATGTAGAAGAGATA+TGG + chr7_1:71283382-71283401 Msa1035480:intron 20.0%
!!! GATAAAAACCTTTAGTTTAT+AGG + chr7_1:71284732-71284751 Msa1035480:intron 20.0%
!!! GAAATATTGGTAACTATTAT+TGG - chr7_1:71284798-71284817 None:intergenic 20.0%
!!! ATTTAATTTTACGTTCACAA+TGG + chr7_1:71285352-71285371 Msa1035480:intron 20.0%
!!! TAATAAAAACTTGCTTCTAT+TGG + chr7_1:71285419-71285438 Msa1035480:intron 20.0%
!!! TTATTGTATGAAGGATATTT+TGG + chr7_1:71286580-71286599 Msa1035480:three_prime_UTR 20.0%
!! AAAAAAAAGTGTGTGTTTGT+TGG - chr7_1:71282851-71282870 None:intergenic 25.0%
!!! AAACACACACTTTTTTTTTC+TGG + chr7_1:71282853-71282872 Msa1035480:five_prime_UTR 25.0%
! TAATGCAAAAATGGAACATT+TGG - chr7_1:71282909-71282928 None:intergenic 25.0%
!!! GTTTTGTTCAAGTTTTTGTT+TGG + chr7_1:71283246-71283265 Msa1035480:intron 25.0%
! ATTTCTTACATGTTAAGTGT+TGG + chr7_1:71283991-71284010 Msa1035480:five_prime_UTR 25.0%
!!! TAGCTTTGAGTTTATTTTTG+TGG - chr7_1:71284243-71284262 None:intergenic 25.0%
! AAACTCAAAGCTAAAGAAAT+TGG + chr7_1:71284250-71284269 Msa1035480:five_prime_UTR 25.0%
! TTTATCTGTTTATTATCGCT+TGG - chr7_1:71284718-71284737 None:intergenic 25.0%
! GTGAAATACCTATAAACTAA+AGG - chr7_1:71284743-71284762 None:intergenic 25.0%
! TGCATACAAAACAGAAATAT+TGG - chr7_1:71284811-71284830 None:intergenic 25.0%
! TACAATTTGAACATAACGTA+TGG - chr7_1:71284858-71284877 None:intergenic 25.0%
! TCTATTGAACAAAACAAGTA+TGG - chr7_1:71285378-71285397 None:intergenic 25.0%
!!! ATACTTGTTTTGTTCAATAG+AGG + chr7_1:71285377-71285396 Msa1035480:intron 25.0%
! TCTATATTCAATACTTAGTG+AGG - chr7_1:71285552-71285571 None:intergenic 25.0%
! ATAAAACCATGCAACTAAAT+TGG - chr7_1:71285642-71285661 None:intergenic 25.0%
! TAGACTAGAAGTTAAAAATG+AGG - chr7_1:71285764-71285783 None:intergenic 25.0%
! TTACAAATGTAACAAATCAG+AGG + chr7_1:71285788-71285807 Msa1035480:intron 25.0%
! TACAAATGTAACAAATCAGA+GGG + chr7_1:71285789-71285808 Msa1035480:intron 25.0%
!! AAAGAATTTGAAATGCAAGA+GGG - chr7_1:71285982-71286001 None:intergenic 25.0%
! TAATAATGTATTAAGCGTGA+AGG + chr7_1:71286347-71286366 Msa1035480:three_prime_UTR 25.0%
! TCATTGTATAGAGCTTATTA+CGG + chr7_1:71286382-71286401 Msa1035480:three_prime_UTR 25.0%
!!! TTTATTGTTTTTGACACGCA+TGG + chr7_1:71282956-71282975 Msa1035480:intron 30.0%
GCATGGATATAAATAAGACT+TGG + chr7_1:71282973-71282992 Msa1035480:intron 30.0%
TAAGACTTGGAATTCTCAAT+TGG + chr7_1:71282986-71283005 Msa1035480:intron 30.0%
AAGACTTGGAATTCTCAATT+GGG + chr7_1:71282987-71283006 Msa1035480:intron 30.0%
!!! GTTTTTTCCTTTGATTGGTA+TGG + chr7_1:71283066-71283085 Msa1035480:intron 30.0%
!!! GGTATGGTTTTGGATTTTTT+TGG + chr7_1:71283082-71283101 Msa1035480:intron 30.0%
!!! TTCACTTGCTGACTTTTTAT+TGG + chr7_1:71283118-71283137 Msa1035480:intron 30.0%
!! TGTTCAAGTTTTTGTTTGGT+TGG + chr7_1:71283250-71283269 Msa1035480:intron 30.0%
!! TTTTTGTTTGGTTGGATTGA+TGG + chr7_1:71283258-71283277 Msa1035480:five_prime_UTR 30.0%
ATACTTCTATTGCAACACTA+TGG - chr7_1:71283496-71283515 None:intergenic 30.0%
! AGTGTTGCAATAGAAGTATA+AGG + chr7_1:71283497-71283516 Msa1035480:intron 30.0%
CATTCCAACTTCTATACTAT+TGG - chr7_1:71283636-71283655 None:intergenic 30.0%
ACAACTGTTAAGTAGCAAAA+TGG - chr7_1:71284214-71284233 None:intergenic 30.0%
TGGAAAGAAATCCTTTAGAT+CGG + chr7_1:71284270-71284289 Msa1035480:five_prime_UTR 30.0%
! TTTCATAATCTGAAGTCAAG+AGG - chr7_1:71284347-71284366 None:intergenic 30.0%
TTGACTTCAGATTATGAAAC+AGG + chr7_1:71284348-71284367 Msa1035480:exon 30.0%
TGTAAGTGTACAGTTAATCT+TGG - chr7_1:71284391-71284410 None:intergenic 30.0%
GTTTAAGCTTTGCATAGTAA+GGG - chr7_1:71285014-71285033 None:intergenic 30.0%
TGTTTAAGCTTTGCATAGTA+AGG - chr7_1:71285015-71285034 None:intergenic 30.0%
CTTAAACATGAGCAAAATTG+TGG + chr7_1:71285027-71285046 Msa1035480:CDS 30.0%
TTTGACATATCGATGATTGA+AGG - chr7_1:71285169-71285188 None:intergenic 30.0%
TGCAGTTGCAGATAATAAAA+AGG - chr7_1:71285484-71285503 None:intergenic 30.0%
! ATTTCCTTAGTCTAAAGCTA+TGG + chr7_1:71285698-71285717 Msa1035480:intron 30.0%
!! TATACCATAGCTTTAGACTA+AGG - chr7_1:71285705-71285724 None:intergenic 30.0%
! AGTCTAAAGCTATGGTATAT+AGG + chr7_1:71285706-71285725 Msa1035480:intron 30.0%
!! ATACATAAGTCGCTATTTCT+AGG + chr7_1:71285882-71285901 Msa1035480:intron 30.0%
!! TACATAAGTCGCTATTTCTA+GGG + chr7_1:71285883-71285902 Msa1035480:intron 30.0%
! AAGAATTTGAAATGCAAGAG+GGG - chr7_1:71285981-71286000 None:intergenic 30.0%
! CAAAGAATTTGAAATGCAAG+AGG - chr7_1:71285983-71286002 None:intergenic 30.0%
CTCTTGCATTTCAAATTCTT+TGG + chr7_1:71285981-71286000 Msa1035480:intron 30.0%
!! TTTCAAATTCTTTGGCTTTC+AGG + chr7_1:71285989-71286008 Msa1035480:intron 30.0%
!!! TTTCAGGTTTTCAATTGCTA+TGG + chr7_1:71286005-71286024 Msa1035480:intron 30.0%
AAAGTTAGAGATAGTCAAGA+TGG + chr7_1:71286212-71286231 Msa1035480:CDS 30.0%
!! AAGATGGACTAATAATTCAG+AGG + chr7_1:71286228-71286247 Msa1035480:CDS 30.0%
!!! GAATCAAGCCCTTTATTTTT+CGG + chr7_1:71286250-71286269 Msa1035480:CDS 30.0%
!!! AATCAAGCCCTTTATTTTTC+GGG + chr7_1:71286251-71286270 Msa1035480:CDS 30.0%
CATTGTATAGAGCTTATTAC+GGG + chr7_1:71286383-71286402 Msa1035480:three_prime_UTR 30.0%
TAAAAGTGAAAGAAAGCTGA+AGG - chr7_1:71286526-71286545 None:intergenic 30.0%
!! GACTTCGTTTTTACATATAC+TGG - chr7_1:71286616-71286635 None:intergenic 30.0%
AAACAACAACGTTGTTGTGT+TGG + chr7_1:71282795-71282814 Msa1035480:five_prime_UTR 35.0%
!! GTGTTTGTTGGTATCGATTA+TGG - chr7_1:71282839-71282858 None:intergenic 35.0%
GACATGGTGTTTATATGTTG+TGG + chr7_1:71283037-71283056 Msa1035480:intron 35.0%
! TCCTTTGATTGGTATGGTTT+TGG + chr7_1:71283072-71283091 Msa1035480:intron 35.0%
TCCAAAACCATACCAATCAA+AGG - chr7_1:71283076-71283095 None:intergenic 35.0%
! ATTCTATTTATGGCTTGCCT+TGG + chr7_1:71283155-71283174 Msa1035480:intron 35.0%
TCATGACAAACAAGTATCCA+AGG - chr7_1:71283175-71283194 None:intergenic 35.0%
! CTATCTACACTTTTGATGCT+TGG + chr7_1:71283305-71283324 Msa1035480:intron 35.0%
TCTGTGTCTTGTGAAATTGA+AGG + chr7_1:71283426-71283445 Msa1035480:intron 35.0%
! AAGTATAAGGCACTAAGATC+TGG + chr7_1:71283510-71283529 Msa1035480:intron 35.0%
! AGTATAAGGCACTAAGATCT+GGG + chr7_1:71283511-71283530 Msa1035480:intron 35.0%
! TTGCAAAGTACTTCAACTTG+AGG - chr7_1:71283597-71283616 None:intergenic 35.0%
CTTGCCAATAGTATAGAAGT+TGG + chr7_1:71283629-71283648 Msa1035480:intron 35.0%
AGTTGGAATGCTGTATTGTT+TGG + chr7_1:71283646-71283665 Msa1035480:intron 35.0%
TACATATCTCAGAAGACAAG+TGG - chr7_1:71283687-71283706 None:intergenic 35.0%
GAGATATGTAGTGATTAGTG+AGG + chr7_1:71283697-71283716 Msa1035480:intron 35.0%
TGATGTTGTTGTCATGTTTC+AGG + chr7_1:71283914-71283933 Msa1035480:intron 35.0%
TATCCTAGGGAAACTCTATA+AGG + chr7_1:71284056-71284075 Msa1035480:five_prime_UTR 35.0%
ATACCTTATAGAGTTTCCCT+AGG - chr7_1:71284062-71284081 None:intergenic 35.0%
TTCAGATTATGAAACAGGCA+AGG + chr7_1:71284353-71284372 Msa1035480:exon 35.0%
TTTCCATTCAATCCAACACT+GGG - chr7_1:71284418-71284437 None:intergenic 35.0%
TCAAGCGTCTATTCATGTTT+CGG + chr7_1:71284552-71284571 Msa1035480:intron 35.0%
GCAATAGCGCATTTGAAAAA+AGG - chr7_1:71284583-71284602 None:intergenic 35.0%
ACCATGATCTTGGGAATATA+AGG + chr7_1:71284911-71284930 Msa1035480:CDS 35.0%
ACCTTATATTCCCAAGATCA+TGG - chr7_1:71284915-71284934 None:intergenic 35.0%
! TCTTGGGAATATAAGGTGTT+TGG + chr7_1:71284918-71284937 Msa1035480:CDS 35.0%
TTGAGATGATCAACAAGAGA+TGG - chr7_1:71285111-71285130 None:intergenic 35.0%
ATCTCTTGTTGATCATCTCA+AGG + chr7_1:71285110-71285129 Msa1035480:CDS 35.0%
! TGGCATTTTCAACTTCATGT+GGG - chr7_1:71285197-71285216 None:intergenic 35.0%
ATGAAGTTGAAAATGCCACA+TGG + chr7_1:71285199-71285218 Msa1035480:CDS 35.0%
AATGTTAAACAGTACTGCAG+GGG - chr7_1:71285459-71285478 None:intergenic 35.0%
GAATGTTAAACAGTACTGCA+GGG - chr7_1:71285460-71285479 None:intergenic 35.0%
AGAATGTTAAACAGTACTGC+AGG - chr7_1:71285461-71285480 None:intergenic 35.0%
TTATTATCTGCAACTGCAAG+TGG + chr7_1:71285486-71285505 Msa1035480:intron 35.0%
AGATCACATGACATACACTT+AGG + chr7_1:71285569-71285588 Msa1035480:intron 35.0%
ACTCATCCAATTTAGTTGCA+TGG + chr7_1:71285633-71285652 Msa1035480:intron 35.0%
ATGGTATATAGGTTCTGCTT+TGG + chr7_1:71285717-71285736 Msa1035480:intron 35.0%
AAATGTAACAAATCAGAGGG+AGG + chr7_1:71285792-71285811 Msa1035480:intron 35.0%
! CAGTTTTTATGGCCTTCTTA+CGG + chr7_1:71286075-71286094 Msa1035480:CDS 35.0%
TTCAGTTACAGCTTAGAAGT+CGG + chr7_1:71286128-71286147 Msa1035480:CDS 35.0%
TTATATGGCAAGGAATTCCT+AGG + chr7_1:71286168-71286187 Msa1035480:CDS 35.0%
ATCTTCTTTCCATATACGAC+CGG - chr7_1:71286309-71286328 None:intergenic 35.0%
! TGTTGTAAGATTTTGCTCTC+TGG + chr7_1:71286407-71286426 Msa1035480:three_prime_UTR 35.0%
TTCAATTCCACACATCTTAG+AGG + chr7_1:71286479-71286498 Msa1035480:three_prime_UTR 35.0%
AAAAAGAGCTCCTGAAGTTG+CGG - chr7_1:71282885-71282904 None:intergenic 40.0%
!! GCTTTGAAAGAACACTACCT+TGG - chr7_1:71283286-71283305 None:intergenic 40.0%
GTAGTGATTAGTGAGGCATA+TGG + chr7_1:71283704-71283723 Msa1035480:intron 40.0%
GATTAGTGAGGCATATGGAT+TGG + chr7_1:71283709-71283728 Msa1035480:intron 40.0%
!! GAGGCATATGGATTGGAATT+TGG + chr7_1:71283716-71283735 Msa1035480:intron 40.0%
!!! AGCGATGTTTTGAGTTTGAG+AGG + chr7_1:71283851-71283870 Msa1035480:intron 40.0%
!!! GCTTTTTTTTCTTGACTCGC+TGG + chr7_1:71283940-71283959 Msa1035480:five_prime_UTR 40.0%
TACTCGTGCTAGATTATCCT+AGG + chr7_1:71284042-71284061 Msa1035480:five_prime_UTR 40.0%
ACTCGTGCTAGATTATCCTA+GGG + chr7_1:71284043-71284062 Msa1035480:five_prime_UTR 40.0%
CCATTTCTGATCCGATCTAA+AGG - chr7_1:71284284-71284303 None:intergenic 40.0%
CCTTTAGATCGGATCAGAAA+TGG + chr7_1:71284281-71284300 Msa1035480:five_prime_UTR 40.0%
! TCTTTGAAAATACCTCCTCC+CGG - chr7_1:71284309-71284328 None:intergenic 40.0%
CACTTACAAAATCCCAGTGT+TGG + chr7_1:71284403-71284422 Msa1035480:CDS 40.0%
! AATCCCAGTGTTGGATTGAA+TGG + chr7_1:71284412-71284431 Msa1035480:CDS 40.0%
CTTTCCATTCAATCCAACAC+TGG - chr7_1:71284419-71284438 None:intergenic 40.0%
GTTGGATTGAATGGAAAGCA+CGG + chr7_1:71284421-71284440 Msa1035480:CDS 40.0%
CACGGAACTAGTTCAAAGAA+TGG + chr7_1:71284439-71284458 Msa1035480:CDS 40.0%
AATGGTGTGCATGACTTACT+CGG + chr7_1:71284457-71284476 Msa1035480:CDS 40.0%
CAAGCGTCTATTCATGTTTC+GGG + chr7_1:71284553-71284572 Msa1035480:intron 40.0%
TGTGTGTTTCAGTGTCCAAA+TGG + chr7_1:71284832-71284851 Msa1035480:intron 40.0%
GAACATAACGTATGGCCATT+TGG - chr7_1:71284850-71284869 None:intergenic 40.0%
! GAATATAAGGTGTTTGGCTC+TGG + chr7_1:71284924-71284943 Msa1035480:CDS 40.0%
CTTGCAGATATCAGAGTCTA+GGG + chr7_1:71284974-71284993 Msa1035480:CDS 40.0%
TCATCTCAAGGATGAACACA+AGG + chr7_1:71285122-71285141 Msa1035480:CDS 40.0%
! GTGGCATTTTCAACTTCATG+TGG - chr7_1:71285198-71285217 None:intergenic 40.0%
AGACAGTCAGATCAACAAAC+AGG - chr7_1:71285250-71285269 None:intergenic 40.0%
GCAAAGTAGCTACAACTTGA+TGG + chr7_1:71285819-71285838 Msa1035480:intron 40.0%
TTGAAGACGAGAAATCGCAT+TGG + chr7_1:71285843-71285862 Msa1035480:intron 40.0%
GCATTTCTGTTTGCACTTTG+AGG + chr7_1:71286031-71286050 Msa1035480:CDS 40.0%
! TGGTACAGCTCCAGTTTTTA+TGG + chr7_1:71286064-71286083 Msa1035480:CDS 40.0%
CGTAAGAAGGCCATAAAAAC+TGG - chr7_1:71286077-71286096 None:intergenic 40.0%
TATGGCCTTCTTACGGTTTA+TGG + chr7_1:71286082-71286101 Msa1035480:CDS 40.0%
ATGGCCTTCTTACGGTTTAT+GGG + chr7_1:71286083-71286102 Msa1035480:CDS 40.0%
CATATGGGCGCAAACTTATA+TGG + chr7_1:71286153-71286172 Msa1035480:CDS 40.0%
!!! AAGCCCTTTATTTTTCGGGT+GGG + chr7_1:71286255-71286274 Msa1035480:CDS 40.0%
ATCCCCACCCGAAAAATAAA+GGG - chr7_1:71286261-71286280 None:intergenic 40.0%
TATCCCCACCCGAAAAATAA+AGG - chr7_1:71286262-71286281 None:intergenic 40.0%
GAGTTGAAATTGCGAATCAC+CGG + chr7_1:71286287-71286306 Msa1035480:CDS 40.0%
CTGGTAATTTCCGCAACTTC+AGG + chr7_1:71282872-71282891 Msa1035480:intron 45.0%
! TGGTTGGATTGATGGTTCCA+AGG + chr7_1:71283266-71283285 Msa1035480:five_prime_UTR 45.0%
! TTTCTTGACTCGCTGGATCT+TGG + chr7_1:71283947-71283966 Msa1035480:five_prime_UTR 45.0%
!!! AAGTGTTGGCCAGAGACTTT+TGG + chr7_1:71284005-71284024 Msa1035480:five_prime_UTR 45.0%
!!! AGTGTTGGCCAGAGACTTTT+GGG + chr7_1:71284006-71284025 Msa1035480:five_prime_UTR 45.0%
ATGGTGTGCATGACTTACTC+GGG + chr7_1:71284458-71284477 Msa1035480:CDS 45.0%
GATGTATCCTCCAATTCACC+AGG + chr7_1:71284501-71284520 Msa1035480:CDS 45.0%
ATTCCCAAGATCATGGTGAC+AGG - chr7_1:71284908-71284927 None:intergenic 45.0%
CCTAGACTCTGATATCTGCA+AGG - chr7_1:71284976-71284995 None:intergenic 45.0%
CCTTGCAGATATCAGAGTCT+AGG + chr7_1:71284973-71284992 Msa1035480:CDS 45.0%
CCAGCATAGGGACAATTGTA+TGG - chr7_1:71285060-71285079 None:intergenic 45.0%
CCATACAATTGTCCCTATGC+TGG + chr7_1:71285057-71285076 Msa1035480:CDS 45.0%
CACAAGGTTGACATGCATGA+TGG + chr7_1:71285138-71285157 Msa1035480:CDS 45.0%
ACTTACAGTGAGCATCCATG+TGG - chr7_1:71285217-71285236 None:intergenic 45.0%
GCTCACTGTAAGTGACTCAA+TGG + chr7_1:71285224-71285243 Msa1035480:intron 45.0%
ATCGCCCATAAACCGTAAGA+AGG - chr7_1:71286090-71286109 None:intergenic 45.0%
AGCTTAGAAGTCGGTGCATA+TGG + chr7_1:71286137-71286156 Msa1035480:CDS 45.0%
GCTTAGAAGTCGGTGCATAT+GGG + chr7_1:71286138-71286157 Msa1035480:CDS 45.0%
!!! CAAGCCCTTTATTTTTCGGG+TGG + chr7_1:71286254-71286273 Msa1035480:CDS 45.0%
!!! AGCCCTTTATTTTTCGGGTG+GGG + chr7_1:71286256-71286275 Msa1035480:CDS 45.0%
!!! TTTTTCGGGTGGGGATAAAC+AGG + chr7_1:71286265-71286284 Msa1035480:CDS 45.0%
TTCCACACATCTTAGAGGTG+AGG + chr7_1:71286484-71286503 Msa1035480:three_prime_UTR 45.0%
TCCACACATCTTAGAGGTGA+GGG + chr7_1:71286485-71286504 Msa1035480:three_prime_UTR 45.0%
CATTCACGCCCAAAAGTCTC+TGG - chr7_1:71284017-71284036 None:intergenic 50.0%
TCAAATGCACACGCAATGCG+AGG - chr7_1:71284116-71284135 None:intergenic 50.0%
GATCGGATCAGAAATGGCTC+CGG + chr7_1:71284287-71284306 Msa1035480:five_prime_UTR 50.0%
ATCGGATCAGAAATGGCTCC+GGG + chr7_1:71284288-71284307 Msa1035480:five_prime_UTR 50.0%
AAGCAGTGCACCTGGTGAAT+TGG - chr7_1:71284514-71284533 None:intergenic 50.0%
GAAATTGCAAGCAGTGCACC+TGG - chr7_1:71284522-71284541 None:intergenic 50.0%
GACAGGTGGGACAGAGATTA+TGG - chr7_1:71284891-71284910 None:intergenic 50.0%
CCAAGATCATGGTGACAGGT+GGG - chr7_1:71284904-71284923 None:intergenic 50.0%
CCACCTGTCACCATGATCTT+GGG + chr7_1:71284902-71284921 Msa1035480:CDS 50.0%
!! GTGTTTGGCTCTGGAGAAAG+TGG + chr7_1:71284933-71284952 Msa1035480:CDS 50.0%
!! TTTGGCTCTGGAGAAAGTGG+CGG + chr7_1:71284936-71284955 Msa1035480:CDS 50.0%
! GGAGAAAGTGGCGGAATCTT+TGG + chr7_1:71284945-71284964 Msa1035480:CDS 50.0%
GAGCACTCAGATCCAGCATA+GGG - chr7_1:71285072-71285091 None:intergenic 50.0%
AGATGGAATGTCGCCCATCA+CGG - chr7_1:71285094-71285113 None:intergenic 50.0%
! AAACAGTACTGCAGGGGCAT+TGG - chr7_1:71285453-71285472 None:intergenic 50.0%
TCTGCAACTGCAAGTGGTGT+TGG + chr7_1:71285492-71285511 Msa1035480:intron 50.0%
!! CACTTTGAGGCTTTCCAGCT+TGG + chr7_1:71286044-71286063 Msa1035480:CDS 50.0%
AAACTGGAGCTGTACCAAGC+TGG - chr7_1:71286061-71286080 None:intergenic 50.0%
GGGCGCAAACTTATATGGCA+AGG + chr7_1:71286158-71286177 Msa1035480:CDS 50.0%
TGCGAATCACCGGTCGTATA+TGG + chr7_1:71286297-71286316 Msa1035480:CDS 50.0%
!! ACCCTCACCTCTAAGATGTG+TGG - chr7_1:71286489-71286508 None:intergenic 50.0%
CAGTGCACCTGGTGAATTGG+AGG - chr7_1:71284511-71284530 None:intergenic 55.0%
CCCACCTGTCACCATGATCT+TGG + chr7_1:71284901-71284920 Msa1035480:CDS 55.0%
CCCAAGATCATGGTGACAGG+TGG - chr7_1:71284905-71284924 None:intergenic 55.0%
! GGAGCACTCAGATCCAGCAT+AGG - chr7_1:71285073-71285092 None:intergenic 55.0%
TGGATCTGAGTGCTCCGTGA+TGG + chr7_1:71285077-71285096 Msa1035480:CDS 55.0%
GGATCTGAGTGCTCCGTGAT+GGG + chr7_1:71285078-71285097 Msa1035480:CDS 55.0%
TGACTGTCGCGTATGCTCCT+AGG - chr7_1:71286188-71286207 None:intergenic 55.0%
GGATCAGAAATGGCTCCGGG+AGG + chr7_1:71284291-71284310 Msa1035480:five_prime_UTR 60.0%
TCAGAAATGGCTCCGGGAGG+AGG + chr7_1:71284294-71284313 Msa1035480:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 71282679 71286644 71282679 ID=Msa1035480;Name=Msa1035480
chr7_1 mRNA 71282679 71286644 71282679 ID=Msa1035480-mRNA-1;Parent=Msa1035480;Name=Msa1035480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=499|1|1|1|0.4|0.33|6|313|289
chr7_1 exon 71282679 71282874 71282679 ID=Msa1035480-mRNA-1:exon:17169;Parent=Msa1035480-mRNA-1
chr7_1 exon 71283258 71283287 71283258 ID=Msa1035480-mRNA-1:exon:17170;Parent=Msa1035480-mRNA-1
chr7_1 exon 71283936 71284077 71283936 ID=Msa1035480-mRNA-1:exon:17171;Parent=Msa1035480-mRNA-1
chr7_1 exon 71284230 71284522 71284230 ID=Msa1035480-mRNA-1:exon:17172;Parent=Msa1035480-mRNA-1
chr7_1 exon 71284844 71285230 71284844 ID=Msa1035480-mRNA-1:exon:17173;Parent=Msa1035480-mRNA-1
chr7_1 exon 71286011 71286644 71286011 ID=Msa1035480-mRNA-1:exon:17174;Parent=Msa1035480-mRNA-1
chr7_1 five_prime_UTR 71282679 71282874 71282679 ID=Msa1035480-mRNA-1:five_prime_utr;Parent=Msa1035480-mRNA-1
chr7_1 five_prime_UTR 71283258 71283287 71283258 ID=Msa1035480-mRNA-1:five_prime_utr;Parent=Msa1035480-mRNA-1
chr7_1 five_prime_UTR 71283936 71284077 71283936 ID=Msa1035480-mRNA-1:five_prime_utr;Parent=Msa1035480-mRNA-1
chr7_1 five_prime_UTR 71284230 71284360 71284230 ID=Msa1035480-mRNA-1:five_prime_utr;Parent=Msa1035480-mRNA-1
chr7_1 CDS 71284361 71284522 71284361 ID=Msa1035480-mRNA-1:cds;Parent=Msa1035480-mRNA-1
chr7_1 CDS 71284844 71285230 71284844 ID=Msa1035480-mRNA-1:cds;Parent=Msa1035480-mRNA-1
chr7_1 CDS 71286011 71286331 71286011 ID=Msa1035480-mRNA-1:cds;Parent=Msa1035480-mRNA-1
chr7_1 three_prime_UTR 71286332 71286644 71286332 ID=Msa1035480-mRNA-1:three_prime_utr;Parent=Msa1035480-mRNA-1
Gene Sequence

>Msa1035480

ATGAAACAGGCAAGGCTAAATCTGAAGCCAAGATTAACTGTACACTTACAAAATCCCAGTGTTGGATTGAATGGAAAGCACGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTCGGGTGCGCTGTCTGCAACAATTTGATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACGTTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGGTGTAATGATATTTTCCCTTACTATGCAAAGCTTAAACATGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCCTATGCTGGATCTGAGTGCTCCGTGATGGGCGACATTCCATCTCTTGTTGATCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAACCCACATGAAGTTGAAAATGCCACATGGATGCTCACTGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGTTACAGCTTAGAAGTCGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTAGGAGCATACGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTAATAATTCAGAGGAATCAAGCCCTTTATTTTTCGGGTGGGGATAAACAGGAGTTGAAATTGCGAATCACCGGTCGTATATGGAAAGAAGATTGA

Protein sequence

>Msa1035480

MKQARLNLKPRLTVHLQNPSVGLNGKHGTSSKNGVHDLLGCAVCNNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPSLVDHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED*