AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438420 MtrunA17_Chr8g0386011 99.216 255 2 0 1 255 1 255 0.0 499
Msa1438420 MtrunA17_Chr3g0131961 57.364 258 97 4 5 253 6 259 1.39e-104 304
Msa1438420 MtrunA17_Chr3g0131951 50.794 252 117 4 1 246 63 313 1.44e-86 262
Msa1438420 MtrunA17_Chr7g0214181 57.870 216 90 1 1 216 1 215 1.35e-83 251
Msa1438420 MtrunA17_Chr7g0215601 53.478 230 106 1 2 231 3 231 4.59e-82 246
Msa1438420 MtrunA17_Chr5g0428281 56.604 212 91 1 5 216 6 216 4.76e-82 247
Msa1438420 MtrunA17_Chr7g0214191 56.481 216 93 1 1 216 1 215 6.10e-81 244
Msa1438420 MtrunA17_Chr5g0444031 50.655 229 112 1 4 232 24 251 4.41e-78 237
Msa1438420 MtrunA17_Chr8g0386001 47.479 238 120 4 5 238 4 240 4.66e-71 219
Msa1438420 MtrunA17_Chr2g0295681 43.182 220 124 1 9 228 5 223 2.73e-52 170
Msa1438420 MtrunA17_Chr3g0119951 40.930 215 126 1 4 217 3 217 8.74e-46 154
Msa1438420 MtrunA17_Chr8g0388621 38.235 238 144 3 11 246 12 248 4.94e-45 151
Msa1438420 MtrunA17_Chr6g0450941 43.842 203 110 3 11 210 83 284 1.41e-44 152
Msa1438420 MtrunA17_Chr3g0125861 37.281 228 135 5 11 233 7 231 2.83e-44 149
Msa1438420 MtrunA17_Chr2g0278491 47.097 155 80 1 56 210 1 153 3.23e-44 149
Msa1438420 MtrunA17_Chr3g0119991 40.816 196 115 1 23 217 1 196 4.21e-41 141
Msa1438420 MtrunA17_Chr8g0359261 38.164 207 124 3 13 217 18 222 6.29e-41 140
Msa1438420 MtrunA17_Chr1g0159431 35.294 221 139 3 10 228 6 224 7.43e-40 138
Msa1438420 MtrunA17_Chr6g0450951 40.426 188 108 3 29 213 5 191 4.13e-37 130
Msa1438420 MtrunA17_Chr1g0158931 31.390 223 150 1 6 225 3 225 1.70e-36 129
Msa1438420 MtrunA17_Chr2g0314571 33.803 213 135 4 13 222 18 227 6.32e-36 127
Msa1438420 MtrunA17_Chr6g0450931 40.212 189 107 5 29 213 5 191 5.88e-35 124
Msa1438420 MtrunA17_Chr4g0059191 36.923 195 120 2 25 217 1 194 2.25e-34 122
Msa1438420 MtrunA17_Chr3g0126421 30.508 236 151 4 13 240 10 240 2.94e-33 121
Msa1438420 MtrunA17_Chr3g0126411 30.833 240 159 4 6 240 3 240 2.21e-32 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438420 AT5G50800.1 57.676 241 100 2 1 240 1 240 3.69e-94 279
Msa1438420 AT5G50790.1 53.689 244 109 4 1 242 1 242 2.43e-91 271
Msa1438420 AT3G48740.1 54.918 244 101 4 4 242 6 245 5.70e-88 263
Msa1438420 AT5G23660.1 54.545 242 105 3 4 242 6 245 1.32e-87 262
Msa1438420 AT5G13170.1 55.963 218 91 3 9 225 11 224 5.51e-85 255
Msa1438420 AT4G25010.1 52.245 245 116 1 1 244 1 245 8.03e-85 254
Msa1438420 AT2G39060.1 49.772 219 108 2 9 227 9 225 5.56e-75 229
Msa1438420 AT4G15920.1 42.925 212 119 2 9 219 5 215 1.30e-53 174
Msa1438420 AT3G16690.1 41.589 214 123 2 9 221 5 217 1.72e-53 173
Msa1438420 AT3G16690.3 41.589 214 123 2 9 221 40 252 2.49e-53 174
Msa1438420 AT5G40260.1 40.444 225 129 5 10 230 9 232 2.61e-46 155
Msa1438420 AT5G62850.1 39.524 210 122 4 11 217 10 217 2.75e-45 152
Msa1438420 AT1G21460.1 36.771 223 135 4 11 230 7 226 6.69e-42 144
Msa1438420 AT4G10850.1 37.273 220 134 4 11 227 12 230 1.17e-41 143
Msa1438420 AT5G53190.1 34.728 239 142 4 13 247 10 238 3.07e-41 142
Msa1438420 AT5G40260.2 42.781 187 103 4 10 192 9 195 9.89e-40 137
Msa1438420 AT3G14770.1 35.885 209 129 4 11 216 16 222 6.83e-38 133
Msa1438420 AT1G66770.1 34.928 209 134 2 11 217 12 220 1.41e-37 133
Msa1438420 AT5G62850.2 38.919 185 108 4 11 192 10 192 1.25e-36 129
Msa1438420 AT3G28007.1 36.538 208 129 3 13 218 12 218 4.11e-34 124
Msa1438420 AT1G21460.2 37.113 194 116 4 11 201 7 197 1.58e-33 120
Msa1438420 AT3G16690.2 37.671 146 89 2 9 153 5 149 3.54e-25 99.0

Find 86 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAACTATTTGTAAATTT+TGG 0.086099 tig0028546:-38052 Msa1438420:intergenic
GTGTATACCCTTTGTTTCTT+TGG 0.184748 tig0028546:-38943 Msa1438420:intergenic
CTTCTCTTGCTGAATGTGTT+TGG 0.204848 tig0028546:+39104 Msa1438420:CDS
ATGAGGTAAAAGAGTGTAAT+AGG 0.205348 tig0028546:+37720 Msa1438420:five_prime_UTR
TGTATACCCTTTGTTTCTTT+GGG 0.209074 tig0028546:-38942 Msa1438420:intergenic
GTTTCTTTGGGGCATAAATT+AGG 0.220003 tig0028546:-38930 Msa1438420:intergenic
AACAATTCCAAAAGTGTTAA+TGG 0.230115 tig0028546:-38881 Msa1438420:intergenic
CTTATCACCATTAACACTTT+TGG 0.238695 tig0028546:+38874 Msa1438420:CDS
ACGTAGTAGTAGTACAATTA+TGG 0.252437 tig0028546:-40206 Msa1438420:intergenic
GAAATCTGCTGAGGGATTTC+AGG 0.262581 tig0028546:+38771 Msa1438420:CDS
TTCTCTTGCTGAATGTGTTT+GGG 0.283443 tig0028546:+39105 Msa1438420:CDS
TCTTCTATGGCCTTCTCCTC+AGG 0.284550 tig0028546:+39458 Msa1438420:CDS
TTGCTGAATGTGTTTGGGTT+TGG 0.294795 tig0028546:+39110 Msa1438420:CDS
TGATTTAAATTCGGTGTAAT+TGG 0.311398 tig0028546:+40116 Msa1438420:three_prime_UTR
GCTGTTATGTGGTTCTTCTA+TGG 0.316301 tig0028546:+39445 Msa1438420:CDS
TTATATGAAATTGAAAGTTT+AGG 0.337684 tig0028546:-40021 Msa1438420:intergenic
ATAATTGATGTTGTGAAGAT+TGG 0.346357 tig0028546:+39896 Msa1438420:CDS
ATAGCAATATTTCTAAGCTT+TGG 0.359986 tig0028546:+40165 Msa1438420:three_prime_UTR
TTGGATAGTGAATGGCGTTT+GGG 0.373677 tig0028546:+37757 Msa1438420:five_prime_UTR
TGGCCATGACTCGTGAATCT+TGG 0.380436 tig0028546:+38091 Msa1438420:CDS
CTCAACTCTTGACCCTTCAT+TGG 0.382813 tig0028546:-39863 Msa1438420:intergenic
GGCACCTCCACCTGCACGAT+TGG 0.385028 tig0028546:-39927 Msa1438420:intergenic
GGCCATGACTCGTGAATCTT+GGG 0.392828 tig0028546:+38092 Msa1438420:CDS
GCACCTCCACCTGCACGATT+GGG 0.405651 tig0028546:-39926 Msa1438420:intergenic
AACACACTTGGATTTGTGTT+CGG 0.406416 tig0028546:+39782 Msa1438420:CDS
TTTGAGATAGCTTGAATTGA+GGG 0.410396 tig0028546:+37975 Msa1438420:five_prime_UTR
GAGAGGGGTTTATGTTGAAA+TGG 0.411692 tig0028546:+37687 None:intergenic
GAACCACATAACAGCATTGA+TGG 0.426987 tig0028546:-39437 Msa1438420:intergenic
TTATTATATTCAAGAAGAAA+TGG 0.427125 tig0028546:+38071 Msa1438420:exon
TTTGGATAGTGAATGGCGTT+TGG 0.427726 tig0028546:+37756 Msa1438420:five_prime_UTR
AACACAAATCCAAGTGTGTT+TGG 0.437116 tig0028546:-39779 Msa1438420:intergenic
CGTAGTAGTAGTACAATTAT+GGG 0.439103 tig0028546:-40205 Msa1438420:intergenic
CTGAAAAGTGCCACAACATA+AGG 0.441782 tig0028546:-38799 Msa1438420:intergenic
CTTCTATGGCCTTCTCCTCA+GGG 0.446491 tig0028546:+39459 Msa1438420:CDS
GCAAAACGTCTTGCTATCAT+AGG 0.455733 tig0028546:+39170 Msa1438420:CDS
TTTAACAATCGAGTACATTC+GGG 0.465861 tig0028546:+39966 Msa1438420:three_prime_UTR
AAAGGTGTGTGATTTAAATT+CGG 0.469972 tig0028546:+40107 Msa1438420:three_prime_UTR
TAATATTGTAAAATGTAAGA+AGG 0.481115 tig0028546:+40041 Msa1438420:three_prime_UTR
TAACCATCAATGCTGTTATG+TGG 0.489473 tig0028546:+39434 Msa1438420:CDS
GAAATGGTTTAAACCAAATG+AGG 0.494067 tig0028546:+37703 Msa1438420:five_prime_UTR
GGTGGTAGAGGCACCAATGA+AGG 0.494736 tig0028546:+39850 Msa1438420:CDS
TCAGGCACTTCCTTATGTTG+TGG 0.494964 tig0028546:+38789 Msa1438420:CDS
CATAGTAATCCCTGAGGAGA+AGG 0.500559 tig0028546:-39468 Msa1438420:intergenic
TGAGGTAAAAGAGTGTAATA+GGG 0.504441 tig0028546:+37721 Msa1438420:five_prime_UTR
AGGCAACATCATTTCCTTTG+CGG 0.507976 tig0028546:+38613 Msa1438420:intron
TTCATTGGTGCCTCTACCAC+CGG 0.508469 tig0028546:-39848 Msa1438420:intergenic
AAATGCTACACCGGTGGTAG+AGG 0.509728 tig0028546:+39838 Msa1438420:CDS
CCATGCAGAGCAAAGTCATA+AGG 0.515167 tig0028546:+39368 Msa1438420:intron
GACCCCAATCGTGCAGGTGG+AGG 0.519554 tig0028546:+39923 Msa1438420:CDS
AAGTGTATTTGGATAGTGAA+TGG 0.521217 tig0028546:+37749 Msa1438420:five_prime_UTR
GTATACCCTTTGTTTCTTTG+GGG 0.522852 tig0028546:-38941 Msa1438420:intergenic
AATATTGTAAAATGTAAGAA+GGG 0.533305 tig0028546:+40042 Msa1438420:three_prime_UTR
AGCCCAAGATTCACGAGTCA+TGG 0.538849 tig0028546:-38094 Msa1438420:intergenic
TCAACTCTCTACCTCTCAAA+GGG 0.539975 tig0028546:+39146 Msa1438420:CDS
TATGGGAGTGTTACGATACA+TGG 0.541540 tig0028546:-40188 Msa1438420:intergenic
TTAAAATCAGACTTTGCTAA+CGG 0.544654 tig0028546:-39948 Msa1438420:intergenic
TAAGAAGGGTGCTTAGCCTC+TGG 0.546917 tig0028546:+40056 Msa1438420:three_prime_UTR
TTCAAGAAGAAATCTGCTGA+GGG 0.551711 tig0028546:+38763 Msa1438420:CDS
TGTGTTCGGCATAATTCAGA+TGG 0.552676 tig0028546:+39796 Msa1438420:CDS
ATCAACTCTCTACCTCTCAA+AGG 0.553313 tig0028546:+39145 Msa1438420:CDS
GGAAACGACCCCAATCGTGC+AGG 0.560744 tig0028546:+39917 Msa1438420:CDS
TTTATGCCCCAAAGAAACAA+AGG 0.567569 tig0028546:+38935 Msa1438420:CDS
AACGACCCCAATCGTGCAGG+TGG 0.576027 tig0028546:+39920 Msa1438420:CDS
TTATGCCCCAAAGAAACAAA+GGG 0.578048 tig0028546:+38936 Msa1438420:CDS
AACGTCTTGCTATCATAGGA+TGG 0.590309 tig0028546:+39174 Msa1438420:CDS
GTGGTAGAGGCACCAATGAA+GGG 0.591402 tig0028546:+39851 Msa1438420:CDS
ATGCAGCTACCAAACACACT+TGG 0.593312 tig0028546:+39770 Msa1438420:intron
CTTCAAGAAGAAATCTGCTG+AGG 0.593379 tig0028546:+38762 Msa1438420:CDS
ATTCTATGCATATCGACTCG+TGG 0.599423 tig0028546:+37925 Msa1438420:intron
CACCTCCACCTGCACGATTG+GGG 0.600426 tig0028546:-39925 Msa1438420:intergenic
GAACATCGATTACGTATACA+AGG 0.615675 tig0028546:-40293 Msa1438420:intergenic
CAAACACATTCAGCAAGAGA+AGG 0.625179 tig0028546:-39103 Msa1438420:intergenic
AAACTAAATACTTATACCAG+AGG 0.635792 tig0028546:-40072 Msa1438420:intergenic
GATATATAGAAATGCTACAC+CGG 0.637638 tig0028546:+39829 Msa1438420:CDS
GTAGAGAGTTGATAGAAGCA+TGG 0.638407 tig0028546:-39135 Msa1438420:intergenic
ATACTTACAATGACGAAGAG+AGG 0.639522 tig0028546:-39233 Msa1438420:intergenic
ATACACTTATGTTGAAAACA+AGG 0.640633 tig0028546:-39202 Msa1438420:intergenic
TGGTGAGAGGAACACCGCAA+AGG 0.662139 tig0028546:-38627 Msa1438420:intergenic
GTTCGGCATAATTCAGATGG+TGG 0.664212 tig0028546:+39799 Msa1438420:CDS
TGGTTACTTACAATGGTGAG+AGG 0.666494 tig0028546:-38640 Msa1438420:intergenic
CTTGAAATGAGTTTGACTGA+GGG 0.667963 tig0028546:-40261 Msa1438420:intergenic
AAGGGTCAAGAGTTGAGTGG+TGG 0.679444 tig0028546:+39869 Msa1438420:CDS
ACTTGAAATGAGTTTGACTG+AGG 0.693520 tig0028546:-40262 Msa1438420:intergenic
ATATAGAAATGCTACACCGG+TGG 0.693921 tig0028546:+39832 Msa1438420:CDS
ATGAAGGGTCAAGAGTTGAG+TGG 0.696772 tig0028546:+39866 Msa1438420:CDS
CGGCAACATAGTAATCCCTG+AGG 0.770046 tig0028546:-39474 Msa1438410:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAACTATTTGTAAATTT+TGG - tig0028546:38055-38074 Msa1438420:intergenic 10.0%
!! AAAAAATCAAATATATATGT+AGG + tig0028546:38516-38535 Msa1438420:intron 10.0%
!! ATATATACATATATACATTT+AGG - tig0028546:38712-38731 Msa1438420:intergenic 10.0%
!!! TAGTAAAGTTTTTTTTTATA+AGG - tig0028546:39018-39037 Msa1438420:intergenic 10.0%
!! TATCAAATATTAAAGTTAAA+GGG - tig0028546:39558-39577 Msa1438420:intergenic 10.0%
!! TTATCAAATATTAAAGTTAA+AGG - tig0028546:39559-39578 Msa1438420:intergenic 10.0%
!!! TAGTTTTATTATTAATGTAA+AGG + tig0028546:40089-40108 Msa1438420:three_prime_UTR 10.0%
!!! AGTTTAGTGTTTTAAATTAA+AGG + tig0028546:37797-37816 Msa1438420:intron 15.0%
!! TTATTATATTCAAGAAGAAA+TGG + tig0028546:38071-38090 Msa1438420:exon 15.0%
!!! ATTTTAATTAGCATGTTAAT+TGG + tig0028546:38391-38410 Msa1438420:intron 15.0%
!! TAATTTACAAGAAAACAAAA+TGG - tig0028546:38663-38682 Msa1438420:intergenic 15.0%
!!! ATTATATGAATATTGACTTA+CGG - tig0028546:39497-39516 Msa1438420:intergenic 15.0%
!!! AATTAGAAAACTTTTCATAT+AGG + tig0028546:39704-39723 Msa1438420:intron 15.0%
!! TTATATGAAATTGAAAGTTT+AGG - tig0028546:40024-40043 Msa1438420:intergenic 15.0%
!! TAATATTGTAAAATGTAAGA+AGG + tig0028546:40041-40060 Msa1438420:three_prime_UTR 15.0%
!! AATATTGTAAAATGTAAGAA+GGG + tig0028546:40042-40061 Msa1438420:three_prime_UTR 15.0%
!!! TTCTAGTTTCTTTTTATAAG+CGG + tig0028546:38268-38287 Msa1438420:intron 20.0%
!!! AAAAGCTAACGTTAAATTTT+AGG - tig0028546:38345-38364 Msa1438420:intergenic 20.0%
!! ATGTATATATTTGTATATGC+AGG + tig0028546:38722-38741 Msa1438420:intron 20.0%
!! TATCACTTACTCATTTAATT+GGG - tig0028546:39316-39335 Msa1438420:intergenic 20.0%
!! TTATCACTTACTCATTTAAT+TGG - tig0028546:39317-39336 Msa1438420:intergenic 20.0%
!! GTTAACGTAATTAAGAAAAT+TGG - tig0028546:39679-39698 Msa1438420:intergenic 20.0%
!!! ATTGAATCTTTTCTTCTTTT+TGG + tig0028546:39742-39761 Msa1438420:intron 20.0%
!! ATAGGGTTAAAAAGTGTATT+TGG + tig0028546:37738-37757 Msa1438420:five_prime_UTR 25.0%
! AATAATATATGCATGGCTTA+TGG - tig0028546:38159-38178 Msa1438420:intergenic 25.0%
! GAAAAGCAATAATATATGCA+TGG - tig0028546:38166-38185 Msa1438420:intergenic 25.0%
! GAAGATGATATTGATGAATA+AGG - tig0028546:38251-38270 Msa1438420:intergenic 25.0%
!!! ATTTTACTCTAAAGAACGTT+TGG - tig0028546:38373-38392 Msa1438420:intergenic 25.0%
! AATCTGTATGTATGTTAACA+CGG - tig0028546:38419-38438 Msa1438420:intergenic 25.0%
!!! CTTTTTGTCATTGTTTTTAC+AGG + tig0028546:38593-38612 Msa1438420:intron 25.0%
! AACAAAATGGTTACTTACAA+TGG - tig0028546:38650-38669 Msa1438420:intergenic 25.0%
! TTGAAGATTACGTAAAAAGT+TGG - tig0028546:38748-38767 Msa1438420:intergenic 25.0%
!!! AACAATTCCAAAAGTGTTAA+TGG - tig0028546:38884-38903 Msa1438420:intergenic 25.0%
! ATACACTTATGTTGAAAACA+AGG - tig0028546:39205-39224 Msa1438420:intergenic 25.0%
! AAAAAGAAGGACAAGAAAAA+TGG - tig0028546:39415-39434 Msa1438420:intergenic 25.0%
! CATACAAAGTACAAACAAAT+GGG - tig0028546:39527-39546 Msa1438420:intergenic 25.0%
! TTTAATGTGCTTCATTAATG+TGG + tig0028546:39610-39629 Msa1438420:intron 25.0%
! GTAATTAAGAAAATTGGTAG+GGG - tig0028546:39673-39692 Msa1438420:intergenic 25.0%
! CGTAATTAAGAAAATTGGTA+GGG - tig0028546:39674-39693 Msa1438420:intergenic 25.0%
! ACGTAATTAAGAAAATTGGT+AGG - tig0028546:39675-39694 Msa1438420:intergenic 25.0%
! ATAATTGATGTTGTGAAGAT+TGG + tig0028546:39896-39915 Msa1438420:CDS 25.0%
! TTAAAATCAGACTTTGCTAA+CGG - tig0028546:39951-39970 Msa1438420:intergenic 25.0%
!! TTTTAACAATCGAGTACATT+CGG + tig0028546:39965-39984 Msa1438420:three_prime_UTR 25.0%
! AAACTAAATACTTATACCAG+AGG - tig0028546:40075-40094 Msa1438420:intergenic 25.0%
!! AAAGGTGTGTGATTTAAATT+CGG + tig0028546:40107-40126 Msa1438420:three_prime_UTR 25.0%
!!! TGATTTAAATTCGGTGTAAT+TGG + tig0028546:40116-40135 Msa1438420:three_prime_UTR 25.0%
!! ATAGCAATATTTCTAAGCTT+TGG + tig0028546:40165-40184 Msa1438420:three_prime_UTR 25.0%
!! CAATTCGTTTTCATTAATAC+TGG - tig0028546:40318-40337 Msa1438420:intergenic 25.0%
!!! TGTTTTAGTAATTTTGTCGT+TGG + tig0028546:40336-40355 Msa1438420:three_prime_UTR 25.0%
!!! GTTTTAGTAATTTTGTCGTT+GGG + tig0028546:40337-40356 Msa1438420:three_prime_UTR 25.0%
GAAATGGTTTAAACCAAATG+AGG + tig0028546:37703-37722 Msa1438420:five_prime_UTR 30.0%
! TTACACTCTTTTACCTCATT+TGG - tig0028546:37719-37738 Msa1438420:intergenic 30.0%
! ATGAGGTAAAAGAGTGTAAT+AGG + tig0028546:37720-37739 Msa1438420:five_prime_UTR 30.0%
! TGAGGTAAAAGAGTGTAATA+GGG + tig0028546:37721-37740 Msa1438420:five_prime_UTR 30.0%
AAGTGTATTTGGATAGTGAA+TGG + tig0028546:37749-37768 Msa1438420:five_prime_UTR 30.0%
!!! TTTTGAGATAGCTTGAATTG+AGG + tig0028546:37974-37993 Msa1438420:five_prime_UTR 30.0%
! TTTGAGATAGCTTGAATTGA+GGG + tig0028546:37975-37994 Msa1438420:five_prime_UTR 30.0%
TGATATTGATGAATAAGGAG+AGG - tig0028546:38246-38265 Msa1438420:intergenic 30.0%
!! ATCTAGTTTGTTATGCTTGT+TGG + tig0028546:38300-38319 Msa1438420:intron 30.0%
TAACATACATACAGATTGCA+TGG + tig0028546:38422-38441 Msa1438420:intron 30.0%
! CTTATCACCATTAACACTTT+TGG + tig0028546:38874-38893 Msa1438420:CDS 30.0%
! TGTATACCCTTTGTTTCTTT+GGG - tig0028546:38945-38964 Msa1438420:intergenic 30.0%
!! AGCATTGATGGTTAAAAAGA+AGG - tig0028546:39428-39447 Msa1438420:intergenic 30.0%
CCATACAAAGTACAAACAAA+TGG - tig0028546:39528-39547 Msa1438420:intergenic 30.0%
CCATTTGTTTGTACTTTGTA+TGG + tig0028546:39525-39544 Msa1438420:intron 30.0%
! CACTTAGATGTTTCTTTTCA+TGG - tig0028546:39641-39660 Msa1438420:intergenic 30.0%
AGAAACATCTAAGTGCTATA+TGG + tig0028546:39646-39665 Msa1438420:intron 30.0%
GATATATAGAAATGCTACAC+CGG + tig0028546:39829-39848 Msa1438420:CDS 30.0%
TTTAACAATCGAGTACATTC+GGG + tig0028546:39966-39985 Msa1438420:three_prime_UTR 30.0%
CGTAGTAGTAGTACAATTAT+GGG - tig0028546:40208-40227 Msa1438420:intergenic 30.0%
ACGTAGTAGTAGTACAATTA+TGG - tig0028546:40209-40228 Msa1438420:intergenic 30.0%
!!! GAATCTTGGGCTTTTGTTTT+CGG + tig0028546:38105-38124 Msa1438420:CDS 35.0%
!!! GCTTTTGTTTTCGGCATTAT+AGG + tig0028546:38114-38133 Msa1438420:CDS 35.0%
!! CATTTGTTAACAAGTGCTGA+TGG + tig0028546:38555-38574 Msa1438420:intron 35.0%
TTCAAGAAGAAATCTGCTGA+GGG + tig0028546:38763-38782 Msa1438420:CDS 35.0%
!! GTTTCTTTGGGGCATAAATT+AGG - tig0028546:38933-38952 Msa1438420:intergenic 35.0%
TTTATGCCCCAAAGAAACAA+AGG + tig0028546:38935-38954 Msa1438420:CDS 35.0%
TTATGCCCCAAAGAAACAAA+GGG + tig0028546:38936-38955 Msa1438420:CDS 35.0%
! GTATACCCTTTGTTTCTTTG+GGG - tig0028546:38944-38963 Msa1438420:intergenic 35.0%
! GTGTATACCCTTTGTTTCTT+TGG - tig0028546:38946-38965 Msa1438420:intergenic 35.0%
TTCTCTTGCTGAATGTGTTT+GGG + tig0028546:39105-39124 Msa1438420:CDS 35.0%
ATACTTACAATGACGAAGAG+AGG - tig0028546:39236-39255 Msa1438420:intergenic 35.0%
TAACCATCAATGCTGTTATG+TGG + tig0028546:39434-39453 Msa1438420:CDS 35.0%
AACACAAATCCAAGTGTGTT+TGG - tig0028546:39782-39801 Msa1438420:intergenic 35.0%
AACACACTTGGATTTGTGTT+CGG + tig0028546:39782-39801 Msa1438420:CDS 35.0%
! TTCGGTGTAATTGGCAAAAA+TGG + tig0028546:40125-40144 Msa1438420:three_prime_UTR 35.0%
CTTGAAATGAGTTTGACTGA+GGG - tig0028546:40264-40283 Msa1438420:intergenic 35.0%
ACTTGAAATGAGTTTGACTG+AGG - tig0028546:40265-40284 Msa1438420:intergenic 35.0%
! GAACATCGATTACGTATACA+AGG - tig0028546:40296-40315 Msa1438420:intergenic 35.0%
TTTGGATAGTGAATGGCGTT+TGG + tig0028546:37756-37775 Msa1438420:five_prime_UTR 40.0%
TTGGATAGTGAATGGCGTTT+GGG + tig0028546:37757-37776 Msa1438420:five_prime_UTR 40.0%
AAGTACACACTAGTTGAGCA+TGG - tig0028546:37881-37900 Msa1438420:intergenic 40.0%
!! ATTCTATGCATATCGACTCG+TGG + tig0028546:37925-37944 Msa1438420:intron 40.0%
ATACAGATTGCATGGCGATA+TGG + tig0028546:38430-38449 Msa1438420:intron 40.0%
AGGCAACATCATTTCCTTTG+CGG + tig0028546:38613-38632 Msa1438420:intron 40.0%
TGGTTACTTACAATGGTGAG+AGG - tig0028546:38643-38662 Msa1438420:intergenic 40.0%
CTTCAAGAAGAAATCTGCTG+AGG + tig0028546:38762-38781 Msa1438420:CDS 40.0%
!! CTGAAAAGTGCCACAACATA+AGG - tig0028546:38802-38821 Msa1438420:intergenic 40.0%
! CACTTTTCAGTGCAATGCTT+TGG + tig0028546:38812-38831 Msa1438420:CDS 40.0%
! CAGCAAGAGAAGGAGTTTTA+TGG - tig0028546:39096-39115 Msa1438420:intergenic 40.0%
CAAACACATTCAGCAAGAGA+AGG - tig0028546:39106-39125 Msa1438420:intergenic 40.0%
CTTCTCTTGCTGAATGTGTT+TGG + tig0028546:39104-39123 Msa1438420:CDS 40.0%
! TTGCTGAATGTGTTTGGGTT+TGG + tig0028546:39110-39129 Msa1438420:CDS 40.0%
!! GTAGAGAGTTGATAGAAGCA+TGG - tig0028546:39138-39157 Msa1438420:intergenic 40.0%
ATCAACTCTCTACCTCTCAA+AGG + tig0028546:39145-39164 Msa1438420:CDS 40.0%
TCAACTCTCTACCTCTCAAA+GGG + tig0028546:39146-39165 Msa1438420:CDS 40.0%
! GCAAAACGTCTTGCTATCAT+AGG + tig0028546:39170-39189 Msa1438420:CDS 40.0%
! AACGTCTTGCTATCATAGGA+TGG + tig0028546:39174-39193 Msa1438420:CDS 40.0%
! GAACCACATAACAGCATTGA+TGG - tig0028546:39440-39459 Msa1438420:intergenic 40.0%
GCTGTTATGTGGTTCTTCTA+TGG + tig0028546:39445-39464 Msa1438420:CDS 40.0%
TGTGTTCGGCATAATTCAGA+TGG + tig0028546:39796-39815 Msa1438420:CDS 40.0%
ATATAGAAATGCTACACCGG+TGG + tig0028546:39832-39851 Msa1438420:CDS 40.0%
!! TATGGGAGTGTTACGATACA+TGG - tig0028546:40191-40210 Msa1438420:intergenic 40.0%
GAAATCTGCTGAGGGATTTC+AGG + tig0028546:38771-38790 Msa1438420:CDS 45.0%
TCAGGCACTTCCTTATGTTG+TGG + tig0028546:38789-38808 Msa1438420:CDS 45.0%
CCTTATGACTTTGCTCTGCA+TGG - tig0028546:39371-39390 Msa1438420:intergenic 45.0%
CCATGCAGAGCAAAGTCATA+AGG + tig0028546:39368-39387 Msa1438420:intron 45.0%
CATAGTAATCCCTGAGGAGA+AGG - tig0028546:39471-39490 Msa1438420:intergenic 45.0%
ATGCAGCTACCAAACACACT+TGG + tig0028546:39770-39789 Msa1438420:intron 45.0%
GTTCGGCATAATTCAGATGG+TGG + tig0028546:39799-39818 Msa1438420:CDS 45.0%
CTCAACTCTTGACCCTTCAT+TGG - tig0028546:39866-39885 Msa1438420:intergenic 45.0%
ATGAAGGGTCAAGAGTTGAG+TGG + tig0028546:39866-39885 Msa1438420:CDS 45.0%
!! TTCAAAAAAATAAATATTAA+AGG + tig0028546:37820-37839 Msa1438420:intron 5.0%
! TGGCGTTTGGGATGAACAAC+TGG + tig0028546:37769-37788 Msa1438420:intron 50.0%
TGGCCATGACTCGTGAATCT+TGG + tig0028546:38091-38110 Msa1438420:CDS 50.0%
GGCCATGACTCGTGAATCTT+GGG + tig0028546:38092-38111 Msa1438420:CDS 50.0%
AGCCCAAGATTCACGAGTCA+TGG - tig0028546:38097-38116 Msa1438420:intergenic 50.0%
! GACGTTTTGCTCCCTTTGAG+AGG - tig0028546:39160-39179 Msa1438420:intergenic 50.0%
TCTTCTATGGCCTTCTCCTC+AGG + tig0028546:39458-39477 Msa1438420:CDS 50.0%
CTTCTATGGCCTTCTCCTCA+GGG + tig0028546:39459-39478 Msa1438420:CDS 50.0%
CGGCAACATAGTAATCCCTG+AGG - tig0028546:39477-39496 Msa1438420:intergenic 50.0%
AAATGCTACACCGGTGGTAG+AGG + tig0028546:39838-39857 Msa1438420:CDS 50.0%
! TTCATTGGTGCCTCTACCAC+CGG - tig0028546:39851-39870 Msa1438420:intergenic 50.0%
!! GTGGTAGAGGCACCAATGAA+GGG + tig0028546:39851-39870 Msa1438420:CDS 50.0%
AAGGGTCAAGAGTTGAGTGG+TGG + tig0028546:39869-39888 Msa1438420:CDS 50.0%
!! TAAGAAGGGTGCTTAGCCTC+TGG + tig0028546:40056-40075 Msa1438420:three_prime_UTR 50.0%
TGGTGAGAGGAACACCGCAA+AGG - tig0028546:38630-38649 Msa1438420:intergenic 55.0%
!! GGTGGTAGAGGCACCAATGA+AGG + tig0028546:39850-39869 Msa1438420:CDS 55.0%
GGAAACGACCCCAATCGTGC+AGG + tig0028546:39917-39936 Msa1438420:CDS 60.0%
AACGACCCCAATCGTGCAGG+TGG + tig0028546:39920-39939 Msa1438420:CDS 60.0%
CACCTCCACCTGCACGATTG+GGG - tig0028546:39928-39947 Msa1438420:intergenic 60.0%
GCACCTCCACCTGCACGATT+GGG - tig0028546:39929-39948 Msa1438420:intergenic 60.0%
GACCCCAATCGTGCAGGTGG+AGG + tig0028546:39923-39942 Msa1438420:CDS 65.0%
GGCACCTCCACCTGCACGAT+TGG - tig0028546:39930-39949 Msa1438420:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0028546 gene 37689 40389 37689 ID=Msa1438420;Name=Msa1438420
tig0028546 mRNA 37689 40389 37689 ID=Msa1438420-mRNA-1;Parent=Msa1438420;Name=Msa1438420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=243|1|1|1|0.83|0.71|7|425|255
tig0028546 exon 37689 37777 37689 ID=Msa1438420-mRNA-1:exon:11240;Parent=Msa1438420-mRNA-1
tig0028546 exon 37936 38135 37936 ID=Msa1438420-mRNA-1:exon:11241;Parent=Msa1438420-mRNA-1
tig0028546 exon 38615 38651 38615 ID=Msa1438420-mRNA-1:exon:11242;Parent=Msa1438420-mRNA-1
tig0028546 exon 38744 38957 38744 ID=Msa1438420-mRNA-1:exon:11243;Parent=Msa1438420-mRNA-1
tig0028546 exon 39086 39247 39086 ID=Msa1438420-mRNA-1:exon:11244;Parent=Msa1438420-mRNA-1
tig0028546 exon 39376 39495 39376 ID=Msa1438420-mRNA-1:exon:11245;Parent=Msa1438420-mRNA-1
tig0028546 exon 39776 40389 39776 ID=Msa1438420-mRNA-1:exon:11246;Parent=Msa1438420-mRNA-1
tig0028546 five_prime_UTR 37689 37777 37689 ID=Msa1438420-mRNA-1:five_prime_utr;Parent=Msa1438420-mRNA-1
tig0028546 five_prime_UTR 37936 38089 37936 ID=Msa1438420-mRNA-1:five_prime_utr;Parent=Msa1438420-mRNA-1
tig0028546 CDS 38090 38135 38090 ID=Msa1438420-mRNA-1:cds;Parent=Msa1438420-mRNA-1
tig0028546 CDS 38615 38651 38615 ID=Msa1438420-mRNA-1:cds;Parent=Msa1438420-mRNA-1
tig0028546 CDS 38744 38957 38744 ID=Msa1438420-mRNA-1:cds;Parent=Msa1438420-mRNA-1
tig0028546 CDS 39086 39247 39086 ID=Msa1438420-mRNA-1:cds;Parent=Msa1438420-mRNA-1
tig0028546 CDS 39376 39495 39376 ID=Msa1438420-mRNA-1:cds;Parent=Msa1438420-mRNA-1
tig0028546 CDS 39776 39964 39776 ID=Msa1438420-mRNA-1:cds;Parent=Msa1438420-mRNA-1
tig0028546 three_prime_UTR 39965 40389 39965 ID=Msa1438420-mRNA-1:three_prime_utr;Parent=Msa1438420-mRNA-1
Gene Sequence

>Msa1438420

ATGGCCATGACTCGTGAATCTTGGGCTTTTGTTTTCGGCATTATAGGCAACATCATTTCCTTTGCGGTGTTCCTCTCACCATTGCCAACTTTTTACGTAATCTTCAAGAAGAAATCTGCTGAGGGATTTCAGGCACTTCCTTATGTTGTGGCACTTTTCAGTGCAATGCTTTGGATCTACTATGCATTTGTCAAAAGAGAATCTGCTCTTCTTCTTATCACCATTAACACTTTTGGAATTGTTGTTGAATCAGCTTACATTATAATGTTCCTAATTTATGCCCCAAAGAAACAAAGGCTTTCAACCATAAAACTCCTTCTCTTGCTGAATGTGTTTGGGTTTGGAGCCATGCTTCTATCAACTCTCTACCTCTCAAAGGGAGCAAAACGTCTTGCTATCATAGGATGGATTTGCCTTGTTTTCAACATAAGTGTATTTGCTGCACCTCTCTTCGTCATTAGCAAAGTCATAAGGTCGAGAAGCGTTGAATACATGCCATTTTTCTTGTCCTTCTTTTTAACCATCAATGCTGTTATGTGGTTCTTCTATGGCCTTCTCCTCAGGGATTACTATGTTGCCCTACCAAACACACTTGGATTTGTGTTCGGCATAATTCAGATGGTGGTGTATTTGATATATAGAAATGCTACACCGGTGGTAGAGGCACCAATGAAGGGTCAAGAGTTGAGTGGTGGTCATATAATTGATGTTGTGAAGATTGGAAACGACCCCAATCGTGCAGGTGGAGGTGCCGTTAGCAAAGTCTGA

Protein sequence

>Msa1438420

MAMTRESWAFVFGIIGNIISFAVFLSPLPTFYVIFKKKSAEGFQALPYVVALFSAMLWIYYAFVKRESALLLITINTFGIVVESAYIIMFLIYAPKKQRLSTIKLLLLLNVFGFGAMLLSTLYLSKGAKRLAIIGWICLVFNISVFAAPLFVISKVIRSRSVEYMPFFLSFFLTINAVMWFFYGLLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVVEAPMKGQELSGGHIIDVVKIGNDPNRAGGGAVSKV*