AlfalfaGEDB | Msa0782030

M. sativa cultivar zhongmu-4 / Msa0782030

KEGG: K05933
GO: GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009593 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009815 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010817 GO:0012505 GO:0016020 GO:0016491 GO:0016638 GO:0016641 GO:0030054 GO:0030312 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071704 GO:0071731 GO:0071732 GO:0071944 GO:0097366 GO:1900140 GO:1900673 GO:1900674 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:2000026
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782030	XP_003616884.1	97.484	318	8	0	1	318	1	318	0.0	647

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782030	sp\|Q9MB94\|ACCO_PRUMU	81.073	317	58	1	2	316	1	317	0.0	553

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782030	G7KH99	97.484	318	8	0	1	318	1	318	0.0	647

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0782030	0.807008	6.235423e-50	-8.615850e-47
Msa0006820	Msa0782030	0.814191	1.746672e-51	-8.615850e-47
Msa0008850	Msa0782030	0.828858	7.116276e-55	-8.615850e-47
Msa0028280	Msa0782030	0.877857	4.488200e-69	-8.615850e-47
Msa0030030	Msa0782030	0.829778	4.255659e-55	-8.615850e-47
Msa0036580	Msa0782030	-0.842403	2.641274e-58	-8.615850e-47
Msa0038310	Msa0782030	0.818550	1.848571e-52	-8.615850e-47
Msa0039200	Msa0782030	0.863725	2.027547e-64	-8.615850e-47
Msa0040190	Msa0782030	0.803149	4.000966e-49	-8.615850e-47
Msa0041780	Msa0782030	0.816133	6.470972e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782030	MtrunA17_Chr5g0439011	97.484	318	8	0	1	318	1	318	0.0	647
Msa0782030	MtrunA17_Chr3g0121141	85.489	317	42	1	2	318	1	313	0.0	571
Msa0782030	MtrunA17_Chr2g0289341	72.414	319	84	2	2	318	1	317	2.57e-178	495
Msa0782030	MtrunA17_Chr3g0125201	49.196	311	146	3	3	306	1	306	7.00e-106	311
Msa0782030	MtrunA17_Chr6g0488511	47.078	308	148	5	3	306	1	297	7.49e-98	291
Msa0782030	MtrunA17_Chr4g0075471	79.856	139	27	1	155	293	24	161	1.42e-78	236
Msa0782030	MtrunA17_Chr5g0437181	38.019	313	179	6	4	306	48	355	5.22e-69	219
Msa0782030	MtrunA17_Chr4g0075431	63.415	164	59	1	2	165	1	163	7.65e-68	209
Msa0782030	MtrunA17_Chr3g0113641	36.278	317	185	7	3	308	48	358	4.56e-64	206
Msa0782030	MtrunA17_Chr4g0006371	34.824	313	190	5	3	305	60	368	4.74e-64	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782030	AT1G05010.1	73.520	321	79	4	2	316	1	321	7.53e-177	492
Msa0782030	AT1G12010.1	69.375	320	91	2	1	318	3	317	2.05e-172	481
Msa0782030	AT1G62380.1	68.553	318	93	2	3	318	5	317	2.71e-171	478
Msa0782030	AT2G19590.1	46.906	307	149	4	3	307	9	303	5.89e-104	307
Msa0782030	AT1G77330.1	48.726	314	142	5	3	306	1	305	7.10e-99	294
Msa0782030	AT2G19590.2	47.636	275	130	4	35	307	26	288	9.95e-93	278
Msa0782030	AT5G05600.1	35.836	293	174	5	4	286	61	349	4.22e-59	194
Msa0782030	AT3G11180.1	34.385	317	189	7	3	311	93	398	8.49e-57	189
Msa0782030	AT3G11180.2	34.286	315	185	7	3	301	93	401	9.13e-57	189
Msa0782030	AT4G10490.1	35.117	299	182	7	4	295	41	334	2.94e-56	186

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Find 97 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTAGCTGGTGAATCA+TGG	0.516202	5_2:-64695229	Msa0782030:intron
AAAGAATCAAATGTTAATTT+GGG	0.360868	5_2:-64693713	Msa0782030:CDS
AAATGGCAAGTACAAGAGTG+TGG	0.640556	5_2:-64693951	Msa0782030:CDS
AACAATAGAGTGGCGCATTG+GGG	0.574691	5_2:+64694553	None:intergenic
AAGGAAGTAATATCAAGCAA+AGG	0.598298	5_2:-64695130	Msa0782030:CDS
AAGGATGATTCCTCCGGCAT+CGG	0.565016	5_2:+64694640	None:intergenic
AAGGATGCTTGTGAGAATTG+GGG	0.513241	5_2:-64695364	Msa0782030:CDS
AATGTGTCCATAAGGTCATG+GGG	0.688791	5_2:+64695202	None:intergenic
AATTAACATTTGATTCTTTC+AGG	0.123673	5_2:+64693717	None:intergenic
AATTGCTCAAAGATGGCCAG+TGG	0.660439	5_2:-64694586	Msa0782030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCTCCAAGCTAATAATT+GGG	+	chr5_2:64693362-64693381	None:intergenic	30.0%
AGTTTCTCCAAGCTAATAAT+TGG	+	chr5_2:64693363-64693382	None:intergenic	30.0%
AAGGAAGTAATATCAAGCAA+AGG	-	chr5_2:64693654-64693673	Msa0782030:three_prime_UTR	30.0%
TGAAGTCAAAGATATGGATT+GGG	-	chr5_2:64693695-64693714	Msa0782030:CDS	30.0%
AGAGAAAGGTTACCTTAAAA+AGG	-	chr5_2:64694025-64694044	Msa0782030:intron	30.0%
GAAACAAATTTACCTCAAGT+TGG	+	chr5_2:64694271-64694290	None:intergenic	30.0%
AATTGAAATGAGAGTTGACT+TGG	+	chr5_2:64694299-64694318	None:intergenic	30.0%
CGTAAAAAATTTGACTGCAA+AGG	-	chr5_2:64694632-64694651	Msa0782030:CDS	30.0%
CTTATGTCAAATCTTGTGTA+TGG	+	chr5_2:64694660-64694679	None:intergenic	30.0%
ATCTTTCATGTGCAAAAAAC+AGG	-	chr5_2:64694770-64694789	Msa0782030:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	64693273	64695533	64693273	ID=Msa0782030;Name=Msa0782030
chr5_2	mRNA	64693273	64695533	64693273	ID=Msa0782030-mRNA-1;Parent=Msa0782030;Name=Msa0782030-mRNA-1;_AED=0.17;_eAED=0.17;_QI=72\|1\|1\|1\|1\|1\|4\|421\|318
chr5_2	exon	64693273	64693981	64693273	ID=Msa0782030-mRNA-1:exon:19458;Parent=Msa0782030-mRNA-1
chr5_2	exon	64694529	64694862	64694529	ID=Msa0782030-mRNA-1:exon:19457;Parent=Msa0782030-mRNA-1
chr5_2	exon	64695016	64695242	64695016	ID=Msa0782030-mRNA-1:exon:19456;Parent=Msa0782030-mRNA-1
chr5_2	exon	64695354	64695533	64695354	ID=Msa0782030-mRNA-1:exon:19455;Parent=Msa0782030-mRNA-1
chr5_2	five_prime_UTR	64695462	64695533	64695462	ID=Msa0782030-mRNA-1:five_prime_utr;Parent=Msa0782030-mRNA-1
chr5_2	CDS	64695354	64695461	64695354	ID=Msa0782030-mRNA-1:cds;Parent=Msa0782030-mRNA-1
chr5_2	CDS	64695016	64695242	64695016	ID=Msa0782030-mRNA-1:cds;Parent=Msa0782030-mRNA-1
chr5_2	CDS	64694529	64694862	64694529	ID=Msa0782030-mRNA-1:cds;Parent=Msa0782030-mRNA-1
chr5_2	CDS	64693694	64693981	64693694	ID=Msa0782030-mRNA-1:cds;Parent=Msa0782030-mRNA-1
chr5_2	three_prime_UTR	64693273	64693693	64693273	ID=Msa0782030-mRNA-1:three_prime_utr;Parent=Msa0782030-mRNA-1

Gene Sequence

>Msa0782030

ATGATGATGAACTTCCCAATTATTAGCTTGGAGAAACTCAATGGTGTTGAGAGAAAAGACACCATGGGGAAAATTAAGGATGCTTGTGAGAATTGGGGATTCTTTGAGCTGGTGAATCATGGTATACCCCATGACCTTATGGACACATTGGAGAGGTTGACCAAAGAGCACTATAGGAAATGCATGGAGCATAGGTTTAAGGAAGTAATATCAAGCAAAGGCTTAGATGCTGTCCAAACTGAAGTCAAAGATATGGATTGGGAAAGCACCTTCCATGTTCGTCACCTCCCTGAATCAAACATTTCAGAGATACCTGATCTCAGTGATGAATACAGGAAAGTGATGAAGGATTTTTCTTTGAGGTTAGAGAAACTAGCAGAAGAGCTTTTGGATGTGTTATGTGAGAATCTTGGACTAGAGAAAGGTTACCTTAAAAAGGCATTTTATGGATCAAGAGGACCAACTTTTGGCACCAAGGTAGCCAACTACCCTCAATGCCCAAATCCAGAGCTGGTGAAGGGTCTTCGTGCTCACACCGATGCCGGAGGAATCATCCTTCTCTTCCAGGATGATAAGGTCAGTGGCCTACAATTGCTCAAAGATGGCCAGTGGATTGATGTTCCCCCAATGCGCCACTCTATTGTTGTCAACCTTGGTGACCAACTTGAGGTAATAACAAATGGCAAGTACAAGAGTGTGGAACATCGTGTGATAGCACAAACTAATGGAACAAGAATGTCCATAGCATCATTCTACAACCCTGGGAGTGATGCTGTAATCTACCCTGCTCCAGAATTGTTGGAAAAACATGCAGAGGAAAAACAGAATGTGTACCCAAAATTTGTGTTTGAAGAGTACATGAAGATCTATGCTGCTTTGAAATTCCATGCTAAGGAACCAAGATTTGAAGCCCTGAAAGAATCAAATGTTAATTTGGGTCCAATTGCAATTGTTTAA

Protein sequence

>Msa0782030

MMMNFPIISLEKLNGVERKDTMGKIKDACENWGFFELVNHGIPHDLMDTLERLTKEHYRKCMEHRFKEVISSKGLDAVQTEVKDMDWESTFHVRHLPESNISEIPDLSDEYRKVMKDFSLRLEKLAEELLDVLCENLGLEKGYLKKAFYGSRGPTFGTKVANYPQCPNPELVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVEHRVIAQTNGTRMSIASFYNPGSDAVIYPAPELLEKHAEEKQNVYPKFVFEEYMKIYAALKFHAKEPRFEALKESNVNLGPIAIV*