AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371250 MtrunA17_Chr8g0386011 98.755 241 3 0 1 241 15 255 2.12e-170 469
Msa1371250 MtrunA17_Chr3g0131961 56.452 248 95 4 1 239 16 259 6.54e-98 286
Msa1371250 MtrunA17_Chr3g0131951 52.101 238 107 4 1 232 77 313 3.70e-83 253
Msa1371250 MtrunA17_Chr7g0215601 55.760 217 95 1 1 217 16 231 1.30e-79 239
Msa1371250 MtrunA17_Chr7g0214181 58.911 202 82 1 1 202 15 215 1.03e-78 238
Msa1371250 MtrunA17_Chr5g0428281 56.931 202 86 1 1 202 16 216 4.91e-78 236
Msa1371250 MtrunA17_Chr5g0444031 53.023 215 100 1 4 218 38 251 5.76e-78 236
Msa1371250 MtrunA17_Chr7g0214191 57.426 202 85 1 1 202 15 215 6.18e-76 231
Msa1371250 MtrunA17_Chr8g0386001 47.137 227 116 3 1 224 15 240 1.65e-68 212
Msa1371250 MtrunA17_Chr2g0295681 42.991 214 121 1 1 214 11 223 3.23e-50 164
Msa1371250 MtrunA17_Chr2g0278491 47.097 155 80 1 42 196 1 153 1.92e-44 149
Msa1371250 MtrunA17_Chr3g0119951 40.686 204 120 1 1 203 14 217 7.32e-44 148
Msa1371250 MtrunA17_Chr8g0388621 38.034 234 142 3 1 232 16 248 2.57e-43 146
Msa1371250 MtrunA17_Chr6g0450941 42.714 199 110 3 1 196 87 284 1.40e-42 146
Msa1371250 MtrunA17_Chr3g0125861 36.771 223 133 5 2 219 12 231 1.99e-42 144
Msa1371250 MtrunA17_Chr3g0119991 40.816 196 115 1 9 203 1 196 3.03e-41 141
Msa1371250 MtrunA17_Chr8g0359261 37.745 204 123 3 2 203 21 222 6.50e-40 137
Msa1371250 MtrunA17_Chr1g0159431 34.884 215 136 3 2 214 12 224 3.31e-37 130
Msa1371250 MtrunA17_Chr6g0450951 40.426 188 108 3 15 199 5 191 3.41e-37 130
Msa1371250 MtrunA17_Chr1g0158931 31.776 214 143 1 1 211 12 225 1.68e-35 126
Msa1371250 MtrunA17_Chr2g0314571 33.493 209 135 3 2 208 21 227 3.50e-35 125
Msa1371250 MtrunA17_Chr6g0450931 40.212 189 107 5 15 199 5 191 3.87e-35 124
Msa1371250 MtrunA17_Chr4g0059191 36.923 195 120 2 11 203 1 194 1.52e-34 122
Msa1371250 MtrunA17_Chr3g0126421 30.769 234 149 4 1 226 12 240 3.53e-33 120
Msa1371250 MtrunA17_Chr3g0126411 31.602 231 151 4 1 226 12 240 6.48e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371250 AT5G50790.1 53.913 230 102 4 1 228 15 242 5.53e-87 259
Msa1371250 AT5G50800.1 56.828 227 96 2 1 226 15 240 2.68e-86 258
Msa1371250 AT3G48740.1 54.506 233 97 4 1 228 17 245 1.28e-81 246
Msa1371250 AT5G13170.1 55.189 212 90 3 1 211 17 224 3.30e-81 245
Msa1371250 AT4G25010.1 53.247 231 107 1 1 230 15 245 3.93e-81 244
Msa1371250 AT5G23660.1 53.680 231 102 3 1 228 17 245 5.49e-81 244
Msa1371250 AT2G39060.1 49.296 213 106 2 1 213 15 225 1.38e-71 219
Msa1371250 AT3G16690.1 41.346 208 120 2 1 207 11 217 1.31e-51 167
Msa1371250 AT4G15920.1 42.718 206 116 2 1 205 11 215 1.47e-51 168
Msa1371250 AT3G16690.3 41.346 208 120 2 1 207 46 252 2.09e-51 168
Msa1371250 AT5G40260.1 40.000 220 127 5 1 216 14 232 7.30e-44 148
Msa1371250 AT5G62850.1 39.512 205 119 4 2 203 15 217 1.40e-43 147
Msa1371250 AT5G53190.1 34.177 237 142 4 1 233 12 238 4.92e-40 139
Msa1371250 AT1G21460.1 36.697 218 132 4 2 216 12 226 5.06e-40 138
Msa1371250 AT4G10850.1 36.574 216 133 4 1 213 16 230 8.60e-40 138
Msa1371250 AT5G40260.2 42.308 182 101 4 1 178 14 195 2.43e-37 130
Msa1371250 AT3G14770.1 35.294 204 127 4 2 202 21 222 1.17e-36 129
Msa1371250 AT1G66770.1 34.634 205 132 2 1 203 16 220 2.52e-36 129
Msa1371250 AT5G62850.2 38.889 180 105 4 2 178 15 192 5.34e-35 124
Msa1371250 AT3G28007.1 36.098 205 128 3 2 204 15 218 6.38e-33 120
Msa1371250 AT1G21460.2 37.037 189 113 4 2 187 12 197 2.12e-31 115
Msa1371250 AT3G16690.2 37.143 140 86 2 1 139 11 149 2.67e-23 93.6

Find 72 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTATACCCTTTGTTTCTT+TGG 0.184748 tig0019188:+122848 None:intergenic
CTTCTCTTGCTGAATGTGTT+TGG 0.204848 tig0019188:-122687 Msa1371250:CDS
TGTATACCCTTTGTTTCTTT+GGG 0.209074 tig0019188:+122849 None:intergenic
GTTTCTTTGGGGCATAAATT+AGG 0.220003 tig0019188:+122861 None:intergenic
AACAATTCCAAAAGTGTTAA+TGG 0.230115 tig0019188:+122910 None:intergenic
CTTATCACCATTAACACTTT+TGG 0.238695 tig0019188:-122917 Msa1371250:CDS
ACGTAGTAGTAGTACAATTA+TGG 0.252437 tig0019188:+121585 None:intergenic
GAAATCTGCTGAGGGATTTC+AGG 0.262581 tig0019188:-123020 Msa1371250:CDS
TTCTCTTGCTGAATGTGTTT+GGG 0.283443 tig0019188:-122686 Msa1371250:CDS
TCTTCTATGGCCTTCTCCTC+AGG 0.284550 tig0019188:-122333 Msa1371250:CDS
TTGCTGAATGTGTTTGGGTT+TGG 0.294795 tig0019188:-122681 Msa1371250:CDS
TGATTTAAATTCGGTGTAAT+TGG 0.311398 tig0019188:-121675 Msa1371250:three_prime_UTR
GCTGTTATGTGGTTCTTCTA+TGG 0.316301 tig0019188:-122346 Msa1371250:CDS
TTATATGAAATTGAAAGTTT+AGG 0.337684 tig0019188:+121770 None:intergenic
ATAATTGATGTTGTGAAGAT+TGG 0.346357 tig0019188:-121895 Msa1371250:CDS
ATAGCAATATTTCTAAGCTT+TGG 0.359986 tig0019188:-121626 Msa1371250:three_prime_UTR
CTCAACTCTTGACCCTTCAT+TGG 0.382813 tig0019188:+121928 None:intergenic
GGCACCTCCACCTGCACGAT+TGG 0.385028 tig0019188:+121864 None:intergenic
GCACCTCCACCTGCACGATT+GGG 0.405651 tig0019188:+121865 None:intergenic
AACACACTTGGATTTGTGTT+CGG 0.406416 tig0019188:-122009 Msa1371250:CDS
GAACCACATAACAGCATTGA+TGG 0.426987 tig0019188:+122354 None:intergenic
AACACAAATCCAAGTGTGTT+TGG 0.437116 tig0019188:+122012 None:intergenic
CGTAGTAGTAGTACAATTAT+GGG 0.439103 tig0019188:+121586 None:intergenic
CTGAAAAGTGCCACAACATA+AGG 0.441782 tig0019188:+122992 None:intergenic
CTTCTATGGCCTTCTCCTCA+GGG 0.446491 tig0019188:-122332 Msa1371250:CDS
GCAAAACGTCTTGCTATCAT+AGG 0.455733 tig0019188:-122621 Msa1371250:CDS
TTTAACAATCGAGTACATTC+GGG 0.465861 tig0019188:-121825 Msa1371250:three_prime_UTR
AAAGGTGTGTGATTTAAATT+CGG 0.469972 tig0019188:-121684 Msa1371250:three_prime_UTR
TAACCATCAATGCTGTTATG+TGG 0.489473 tig0019188:-122357 Msa1371250:CDS
GGTGGTAGAGGCACCAATGA+AGG 0.494736 tig0019188:-121941 Msa1371250:CDS
TCAGGCACTTCCTTATGTTG+TGG 0.494964 tig0019188:-123002 Msa1371250:CDS
CATAGTAATCCCTGAGGAGA+AGG 0.500559 tig0019188:+122323 None:intergenic
AGGCAACATCATTTCCTTTG+CGG 0.507976 tig0019188:-123178 Msa1371250:CDS
TTCATTGGTGCCTCTACCAC+CGG 0.508469 tig0019188:+121943 None:intergenic
AAATGCTACACCGGTGGTAG+AGG 0.509728 tig0019188:-121953 Msa1371250:CDS
CCATGCAGAGCAAAGTCATA+AGG 0.515167 tig0019188:-122423 Msa1371250:intron
GACCCCAATCGTGCAGGTGG+AGG 0.519554 tig0019188:-121868 Msa1371250:CDS
GTATACCCTTTGTTTCTTTG+GGG 0.522852 tig0019188:+122850 None:intergenic
CAAGAAGGGTGCTTAGCCTC+TGG 0.528977 tig0019188:-121735 Msa1371250:three_prime_UTR
TCAACTCTCTACCTCTCAAA+GGG 0.539975 tig0019188:-122645 Msa1371250:CDS
TAATATTGTAAAATGCAAGA+AGG 0.541132 tig0019188:-121750 Msa1371250:three_prime_UTR
TATGGGAGTGTTACGATACA+TGG 0.541540 tig0019188:+121603 None:intergenic
TTAAAATCAGACTTTGCTAA+CGG 0.544654 tig0019188:+121843 None:intergenic
TTCAAGAAGAAATCTGCTGA+GGG 0.551711 tig0019188:-123028 Msa1371250:CDS
TGTGTTCGGCATAATTCAGA+TGG 0.552676 tig0019188:-121995 Msa1371250:CDS
ATCAACTCTCTACCTCTCAA+AGG 0.553313 tig0019188:-122646 Msa1371250:CDS
GGAAACGACCCCAATCGTGC+AGG 0.560744 tig0019188:-121874 Msa1371250:CDS
AATATTGTAAAATGCAAGAA+GGG 0.562824 tig0019188:-121749 Msa1371250:three_prime_UTR
TTTATGCCCCAAAGAAACAA+AGG 0.567569 tig0019188:-122856 Msa1371250:CDS
AACGACCCCAATCGTGCAGG+TGG 0.576027 tig0019188:-121871 Msa1371250:CDS
TTATGCCCCAAAGAAACAAA+GGG 0.578048 tig0019188:-122855 Msa1371250:intron
AACGTCTTGCTATCATAGGA+TGG 0.590309 tig0019188:-122617 Msa1371250:CDS
GTGGTAGAGGCACCAATGAA+GGG 0.591402 tig0019188:-121940 Msa1371250:CDS
ATGCAGCTACCAAACACACT+TGG 0.593312 tig0019188:-122021 Msa1371250:intron
CTTCAAGAAGAAATCTGCTG+AGG 0.593379 tig0019188:-123029 Msa1371250:CDS
CACCTCCACCTGCACGATTG+GGG 0.600426 tig0019188:+121866 None:intergenic
GAACATCGATTACGTATACA+AGG 0.615675 tig0019188:+121498 None:intergenic
CAAACACATTCAGCAAGAGA+AGG 0.625179 tig0019188:+122688 None:intergenic
AAACTAAATACTTATACCAG+AGG 0.635792 tig0019188:+121719 None:intergenic
GATATATAGAAATGCTACAC+CGG 0.637638 tig0019188:-121962 Msa1371250:CDS
GTAGAGAGTTGATAGAAGCA+TGG 0.638407 tig0019188:+122656 None:intergenic
ATACTTACAATGACGAAGAG+AGG 0.639522 tig0019188:+122558 None:intergenic
ATACACTTATGTTGAAAACA+AGG 0.640633 tig0019188:+122589 None:intergenic
TGGTGAGAGGAACACCGCAA+AGG 0.662139 tig0019188:+123164 None:intergenic
GTTCGGCATAATTCAGATGG+TGG 0.664212 tig0019188:-121992 Msa1371250:CDS
TGGTTACTTACAATGGTGAG+AGG 0.666494 tig0019188:+123151 None:intergenic
CTTGAAATGAGTTTGACTGA+GGG 0.667963 tig0019188:+121530 None:intergenic
AAGGGTCAAGAGTTGAGTGG+TGG 0.679444 tig0019188:-121922 Msa1371250:CDS
ACTTGAAATGAGTTTGACTG+AGG 0.693520 tig0019188:+121529 None:intergenic
ATATAGAAATGCTACACCGG+TGG 0.693921 tig0019188:-121959 Msa1371250:CDS
ATGAAGGGTCAAGAGTTGAG+TGG 0.696772 tig0019188:-121925 Msa1371250:CDS
CGGCAACATAGTAATCCCTG+AGG 0.770046 tig0019188:+122317 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAACTATTTGTAAATTT+TGG + tig0019188:122064-122083 None:intergenic 10.0%
!! AAAAAATCAAATATATATGT+AGG - tig0019188:122525-122544 Msa1371250:intron 10.0%
!!! TAGTAAAGTTTTTTTTTATA+AGG + tig0019188:123027-123046 None:intergenic 10.0%
!! TATCAAATATTAAAGTTAAA+GGG + tig0019188:123567-123586 None:intergenic 10.0%
!! TTATCAAATATTAAAGTTAA+AGG + tig0019188:123568-123587 None:intergenic 10.0%
!!! TAGTTTTATTATTAATGTAA+AGG - tig0019188:124098-124117 Msa1371250:intron 10.0%
!!! AGTTTAGTGTTTTAAATTAA+AGG - tig0019188:121806-121825 Msa1371250:three_prime_UTR 15.0%
!! TTATTATATTCAAGAAGAAA+TGG - tig0019188:122080-122099 Msa1371250:intron 15.0%
!!! ATTTTAATTAGCATGTTAAT+TGG - tig0019188:122400-122419 Msa1371250:CDS 15.0%
!! TAATTTACAAGAAAACAAAA+TGG + tig0019188:122672-122691 None:intergenic 15.0%
!! ATATATACATATATACGTTT+AGG + tig0019188:122721-122740 None:intergenic 15.0%
!!! ATTATATGAATATTGACTTA+CGG + tig0019188:123506-123525 None:intergenic 15.0%
!!! AATTAGAAAACTTTTCATAT+AGG - tig0019188:123713-123732 Msa1371250:intron 15.0%
!! TTATATGAAATTGAAAGTTT+AGG + tig0019188:124033-124052 None:intergenic 15.0%
!!! ATTTTACCTTGAAAATGTTA+CGG + tig0019188:121467-121486 None:intergenic 20.0%
!!! TTCTAGTTTCTTTTTATAAG+CGG - tig0019188:122277-122296 Msa1371250:intron 20.0%
!!! AAAAGCTAACGTTAAATTTT+AGG + tig0019188:122354-122373 None:intergenic 20.0%
!! ATGTATATATTTGTATATGC+AGG - tig0019188:122731-122750 Msa1371250:intron 20.0%
!! GTTAACGTAATTAAGAAAAT+TGG + tig0019188:123688-123707 None:intergenic 20.0%
!!! ATTGAATCTTTTCTTCTTTT+TGG - tig0019188:123751-123770 Msa1371250:intron 20.0%
!! TAATATTGTAAAATGCAAGA+AGG - tig0019188:124050-124069 Msa1371250:intron 20.0%
!! AATATTGTAAAATGCAAGAA+GGG - tig0019188:124051-124070 Msa1371250:intron 20.0%
! AAGGTAAAATAAATCCGTAT+AGG - tig0019188:121477-121496 Msa1371250:three_prime_UTR 25.0%
! ACAATACACAAAATTACGTT+GGG + tig0019188:121649-121668 None:intergenic 25.0%
! TACAATACACAAAATTACGT+TGG + tig0019188:121650-121669 None:intergenic 25.0%
! TTGTGTATTGTAACTAGTAA+TGG - tig0019188:121658-121677 Msa1371250:three_prime_UTR 25.0%
!! ATAGGGTTAAAAAGTGTATT+TGG - tig0019188:121747-121766 Msa1371250:three_prime_UTR 25.0%
! AATAATATATGCATGGCTTA+TGG + tig0019188:122168-122187 None:intergenic 25.0%
! GAAAAGCAATAATATATGCA+TGG + tig0019188:122175-122194 None:intergenic 25.0%
! GAAGATGATATTGATGAATA+AGG + tig0019188:122260-122279 None:intergenic 25.0%
!!! ATTTTACTCTAAAGAACGTT+TGG + tig0019188:122382-122401 None:intergenic 25.0%
! AATCTGTATGTATGTTAACA+CGG + tig0019188:122428-122447 None:intergenic 25.0%
!!! CTTTTTGTCATTGTTTTTAC+AGG - tig0019188:122602-122621 Msa1371250:CDS 25.0%
! AACAAAATGGTTACTTACAA+TGG + tig0019188:122659-122678 None:intergenic 25.0%
! TTGAAGATTACGTAAAAAGT+TGG + tig0019188:122757-122776 None:intergenic 25.0%
!!! AACAATTCCAAAAGTGTTAA+TGG + tig0019188:122893-122912 None:intergenic 25.0%
! ATACACTTATGTTGAAAACA+AGG + tig0019188:123214-123233 None:intergenic 25.0%
! TATCACTTACTCATTTAGTT+GGG + tig0019188:123325-123344 None:intergenic 25.0%
! TTATCACTTACTCATTTAGT+TGG + tig0019188:123326-123345 None:intergenic 25.0%
! AAAAAGAAGGACAAGAAAAA+TGG + tig0019188:123424-123443 None:intergenic 25.0%
! CATACAAAGTACAAACAAAT+GGG + tig0019188:123536-123555 None:intergenic 25.0%
! TTTAATGTGCTTCATTAATG+TGG - tig0019188:123619-123638 Msa1371250:intron 25.0%
! GTAATTAAGAAAATTGGTAG+GGG + tig0019188:123682-123701 None:intergenic 25.0%
! CGTAATTAAGAAAATTGGTA+GGG + tig0019188:123683-123702 None:intergenic 25.0%
! ACGTAATTAAGAAAATTGGT+AGG + tig0019188:123684-123703 None:intergenic 25.0%
! ATAATTGATGTTGTGAAGAT+TGG - tig0019188:123905-123924 Msa1371250:intron 25.0%
! TTAAAATCAGACTTTGCTAA+CGG + tig0019188:123960-123979 None:intergenic 25.0%
!! TTTTAACAATCGAGTACATT+CGG - tig0019188:123974-123993 Msa1371250:intron 25.0%
! AAACTAAATACTTATACCAG+AGG + tig0019188:124084-124103 None:intergenic 25.0%
!! AAAGGTGTGTGATTTAAATT+CGG - tig0019188:124116-124135 Msa1371250:intron 25.0%
!!! TGATTTAAATTCGGTGTAAT+TGG - tig0019188:124125-124144 Msa1371250:intron 25.0%
!! ATAGCAATATTTCTAAGCTT+TGG - tig0019188:124174-124193 Msa1371250:intron 25.0%
!! CAATTCGTTTTCATTAATAC+TGG + tig0019188:124327-124346 None:intergenic 25.0%
!!! TGTTTTAGTAATTTTGTCGT+TGG - tig0019188:124345-124364 Msa1371250:intron 25.0%
!!! GTTTTAGTAATTTTGTCGTT+GGG - tig0019188:124346-124365 Msa1371250:intron 25.0%
TGATGCCAAAATGAATATTG+AGG - tig0019188:121435-121454 Msa1371250:three_prime_UTR 30.0%
! GGTTACCTCAATATTCATTT+TGG + tig0019188:121443-121462 None:intergenic 30.0%
GAAATGGTTTAAACCAAATG+AGG - tig0019188:121712-121731 Msa1371250:three_prime_UTR 30.0%
! TTACACTCTTTTACCTCATT+TGG + tig0019188:121728-121747 None:intergenic 30.0%
! ATGAGGTAAAAGAGTGTAAT+AGG - tig0019188:121729-121748 Msa1371250:three_prime_UTR 30.0%
! TGAGGTAAAAGAGTGTAATA+GGG - tig0019188:121730-121749 Msa1371250:three_prime_UTR 30.0%
AAGTGTATTTGGATAGTGAA+TGG - tig0019188:121758-121777 Msa1371250:three_prime_UTR 30.0%
!!! TTTTGAGATAGCTTGAATTG+AGG - tig0019188:121983-122002 Msa1371250:CDS 30.0%
! TTTGAGATAGCTTGAATTGA+GGG - tig0019188:121984-122003 Msa1371250:CDS 30.0%
TGATATTGATGAATAAGGAG+AGG + tig0019188:122255-122274 None:intergenic 30.0%
!! ATCTAGTTTGTTATGCTTGT+TGG - tig0019188:122309-122328 Msa1371250:intron 30.0%
TAACATACATACAGATTGCA+TGG - tig0019188:122431-122450 Msa1371250:intron 30.0%
! CTTATCACCATTAACACTTT+TGG - tig0019188:122883-122902 Msa1371250:CDS 30.0%
! TGTATACCCTTTGTTTCTTT+GGG + tig0019188:122954-122973 None:intergenic 30.0%
!! AGCATTGATGGTTAAAAAGA+AGG + tig0019188:123437-123456 None:intergenic 30.0%
CCATACAAAGTACAAACAAA+TGG + tig0019188:123537-123556 None:intergenic 30.0%
CCATTTGTTTGTACTTTGTA+TGG - tig0019188:123534-123553 Msa1371250:intron 30.0%
! CACTTAGATGTTTCTTTTCA+TGG + tig0019188:123650-123669 None:intergenic 30.0%
AGAAACATCTAAGTGCTATA+TGG - tig0019188:123655-123674 Msa1371250:intron 30.0%
GATATATAGAAATGCTACAC+CGG - tig0019188:123838-123857 Msa1371250:intron 30.0%
TTTAACAATCGAGTACATTC+GGG - tig0019188:123975-123994 Msa1371250:intron 30.0%
CGTAGTAGTAGTACAATTAT+GGG + tig0019188:124217-124236 None:intergenic 30.0%
ACGTAGTAGTAGTACAATTA+TGG + tig0019188:124218-124237 None:intergenic 30.0%
! TAACCACCGTAACATTTTCA+AGG - tig0019188:121458-121477 Msa1371250:three_prime_UTR 35.0%
TTACCTTGAAAATGTTACGG+TGG + tig0019188:121464-121483 None:intergenic 35.0%
TGACACATCAGAAAGAAGAT+TGG - tig0019188:121619-121638 Msa1371250:three_prime_UTR 35.0%
ACATCAGAAAGAAGATTGGT+GGG - tig0019188:121623-121642 Msa1371250:three_prime_UTR 35.0%
!!! GAATCTTGGGCTTTTGTTTT+CGG - tig0019188:122114-122133 Msa1371250:intron 35.0%
!!! GCTTTTGTTTTCGGCATTAT+AGG - tig0019188:122123-122142 Msa1371250:intron 35.0%
!! CATTTGTTAACAAGTGCTGA+TGG - tig0019188:122564-122583 Msa1371250:intron 35.0%
TTCAAGAAGAAATCTGCTGA+GGG - tig0019188:122772-122791 Msa1371250:intron 35.0%
!! GTTTCTTTGGGGCATAAATT+AGG + tig0019188:122942-122961 None:intergenic 35.0%
TTTATGCCCCAAAGAAACAA+AGG - tig0019188:122944-122963 Msa1371250:CDS 35.0%
TTATGCCCCAAAGAAACAAA+GGG - tig0019188:122945-122964 Msa1371250:CDS 35.0%
! GTATACCCTTTGTTTCTTTG+GGG + tig0019188:122953-122972 None:intergenic 35.0%
! GTGTATACCCTTTGTTTCTT+TGG + tig0019188:122955-122974 None:intergenic 35.0%
TTCTCTTGCTGAATGTGTTT+GGG - tig0019188:123114-123133 Msa1371250:intron 35.0%
ATACTTACAATGACGAAGAG+AGG + tig0019188:123245-123264 None:intergenic 35.0%
TAACCATCAATGCTGTTATG+TGG - tig0019188:123443-123462 Msa1371250:intron 35.0%
AACACAAATCCAAGTGTGTT+TGG + tig0019188:123791-123810 None:intergenic 35.0%
AACACACTTGGATTTGTGTT+CGG - tig0019188:123791-123810 Msa1371250:intron 35.0%
! TTCGGTGTAATTGGCAAAAA+TGG - tig0019188:124134-124153 Msa1371250:intron 35.0%
CTTGAAATGAGTTTGACTGA+GGG + tig0019188:124273-124292 None:intergenic 35.0%
ACTTGAAATGAGTTTGACTG+AGG + tig0019188:124274-124293 None:intergenic 35.0%
! GAACATCGATTACGTATACA+AGG + tig0019188:124305-124324 None:intergenic 35.0%
AATCCGTATAGGAGAGTTAG+AGG - tig0019188:121488-121507 Msa1371250:three_prime_UTR 40.0%
ACTCCTCTAACTCTCCTATA+CGG + tig0019188:121494-121513 None:intergenic 40.0%
ATAGGATGGAGGCAATGAAT+TGG - tig0019188:121539-121558 Msa1371250:three_prime_UTR 40.0%
AAAGCCTTACAGCTCATACA+AGG + tig0019188:121584-121603 None:intergenic 40.0%
!! CTGTAAGGCTTTAAACCACT+TGG - tig0019188:121592-121611 Msa1371250:three_prime_UTR 40.0%
!! TAAGGCTTTAAACCACTTGG+TGG - tig0019188:121595-121614 Msa1371250:three_prime_UTR 40.0%
!! AAGGCTTTAAACCACTTGGT+GGG - tig0019188:121596-121615 Msa1371250:three_prime_UTR 40.0%
CACATCAGAAAGAAGATTGG+TGG - tig0019188:121622-121641 Msa1371250:three_prime_UTR 40.0%
TCAACATAAACCCCTCTCAT+GGG + tig0019188:121694-121713 None:intergenic 40.0%
TTCAACATAAACCCCTCTCA+TGG + tig0019188:121695-121714 None:intergenic 40.0%
GAGAGGGGTTTATGTTGAAA+TGG - tig0019188:121696-121715 Msa1371250:three_prime_UTR 40.0%
TTTGGATAGTGAATGGCGTT+TGG - tig0019188:121765-121784 Msa1371250:three_prime_UTR 40.0%
TTGGATAGTGAATGGCGTTT+GGG - tig0019188:121766-121785 Msa1371250:three_prime_UTR 40.0%
AAGTACACACTAGTTGAGCA+TGG + tig0019188:121890-121909 None:intergenic 40.0%
!! ATTCTATGCATATCGACTCG+TGG - tig0019188:121934-121953 Msa1371250:CDS 40.0%
ATACAGATTGCATGGCGATA+TGG - tig0019188:122439-122458 Msa1371250:intron 40.0%
AGGCAACATCATTTCCTTTG+CGG - tig0019188:122622-122641 Msa1371250:CDS 40.0%
TGGTTACTTACAATGGTGAG+AGG + tig0019188:122652-122671 None:intergenic 40.0%
CTTCAAGAAGAAATCTGCTG+AGG - tig0019188:122771-122790 Msa1371250:intron 40.0%
!! CTGAAAAGTGCCACAACATA+AGG + tig0019188:122811-122830 None:intergenic 40.0%
! CACTTTTCAGTGCAATGCTT+TGG - tig0019188:122821-122840 Msa1371250:intron 40.0%
! CAGCAAGAGAAGGAGTTTTA+TGG + tig0019188:123105-123124 None:intergenic 40.0%
CAAACACATTCAGCAAGAGA+AGG + tig0019188:123115-123134 None:intergenic 40.0%
CTTCTCTTGCTGAATGTGTT+TGG - tig0019188:123113-123132 Msa1371250:intron 40.0%
! TTGCTGAATGTGTTTGGGTT+TGG - tig0019188:123119-123138 Msa1371250:intron 40.0%
!! GTAGAGAGTTGATAGAAGCA+TGG + tig0019188:123147-123166 None:intergenic 40.0%
ATCAACTCTCTACCTCTCAA+AGG - tig0019188:123154-123173 Msa1371250:intron 40.0%
TCAACTCTCTACCTCTCAAA+GGG - tig0019188:123155-123174 Msa1371250:intron 40.0%
! GCAAAACGTCTTGCTATCAT+AGG - tig0019188:123179-123198 Msa1371250:CDS 40.0%
! AACGTCTTGCTATCATAGGA+TGG - tig0019188:123183-123202 Msa1371250:intron 40.0%
! GAACCACATAACAGCATTGA+TGG + tig0019188:123449-123468 None:intergenic 40.0%
GCTGTTATGTGGTTCTTCTA+TGG - tig0019188:123454-123473 Msa1371250:intron 40.0%
TGTGTTCGGCATAATTCAGA+TGG - tig0019188:123805-123824 Msa1371250:intron 40.0%
ATATAGAAATGCTACACCGG+TGG - tig0019188:123841-123860 Msa1371250:intron 40.0%
!! TATGGGAGTGTTACGATACA+TGG + tig0019188:124200-124219 None:intergenic 40.0%
CATCCTATTCCAAAGGGTCA+GGG + tig0019188:121527-121546 None:intergenic 45.0%
TGCCTCCATCCTATTCCAAA+GGG + tig0019188:121533-121552 None:intergenic 45.0%
TTGCCTCCATCCTATTCCAA+AGG + tig0019188:121534-121553 None:intergenic 45.0%
AGCACCTTGTATGAGCTGTA+AGG - tig0019188:121577-121596 Msa1371250:three_prime_UTR 45.0%
CAACATAAACCCCTCTCATG+GGG + tig0019188:121693-121712 None:intergenic 45.0%
GAAATCTGCTGAGGGATTTC+AGG - tig0019188:122780-122799 Msa1371250:intron 45.0%
TCAGGCACTTCCTTATGTTG+TGG - tig0019188:122798-122817 Msa1371250:intron 45.0%
CCTTATGACTTTGCTCTGCA+TGG + tig0019188:123380-123399 None:intergenic 45.0%
CCATGCAGAGCAAAGTCATA+AGG - tig0019188:123377-123396 Msa1371250:intron 45.0%
CATAGTAATCCCTGAGGAGA+AGG + tig0019188:123480-123499 None:intergenic 45.0%
ATGCAGCTACCAAACACACT+TGG - tig0019188:123779-123798 Msa1371250:intron 45.0%
GTTCGGCATAATTCAGATGG+TGG - tig0019188:123808-123827 Msa1371250:intron 45.0%
CTCAACTCTTGACCCTTCAT+TGG + tig0019188:123875-123894 None:intergenic 45.0%
ATGAAGGGTCAAGAGTTGAG+TGG - tig0019188:123875-123894 Msa1371250:intron 45.0%
!! TTCAAAAAAATAAATATTAA+AGG - tig0019188:121829-121848 Msa1371250:three_prime_UTR 5.0%
CCATCCTATTCCAAAGGGTC+AGG + tig0019188:121528-121547 None:intergenic 50.0%
!! CCTGACCCTTTGGAATAGGA+TGG - tig0019188:121525-121544 Msa1371250:three_prime_UTR 50.0%
!! GACCCTTTGGAATAGGATGG+AGG - tig0019188:121528-121547 Msa1371250:three_prime_UTR 50.0%
! TGGCGTTTGGGATGAACAAC+TGG - tig0019188:121778-121797 Msa1371250:three_prime_UTR 50.0%
TGGCCATGACTCGTGAATCT+TGG - tig0019188:122100-122119 Msa1371250:intron 50.0%
GGCCATGACTCGTGAATCTT+GGG - tig0019188:122101-122120 Msa1371250:intron 50.0%
AGCCCAAGATTCACGAGTCA+TGG + tig0019188:122106-122125 None:intergenic 50.0%
! GACGTTTTGCTCCCTTTGAG+AGG + tig0019188:123169-123188 None:intergenic 50.0%
TCTTCTATGGCCTTCTCCTC+AGG - tig0019188:123467-123486 Msa1371250:intron 50.0%
CTTCTATGGCCTTCTCCTCA+GGG - tig0019188:123468-123487 Msa1371250:intron 50.0%
CGGCAACATAGTAATCCCTG+AGG + tig0019188:123486-123505 None:intergenic 50.0%
AAATGCTACACCGGTGGTAG+AGG - tig0019188:123847-123866 Msa1371250:intron 50.0%
! TTCATTGGTGCCTCTACCAC+CGG + tig0019188:123860-123879 None:intergenic 50.0%
!! GTGGTAGAGGCACCAATGAA+GGG - tig0019188:123860-123879 Msa1371250:intron 50.0%
AAGGGTCAAGAGTTGAGTGG+TGG - tig0019188:123878-123897 Msa1371250:intron 50.0%
!! ACAAGAGCACCCTGACCCTT+TGG - tig0019188:121515-121534 Msa1371250:three_prime_UTR 55.0%
!! GCACCCTGACCCTTTGGAAT+AGG - tig0019188:121521-121540 Msa1371250:three_prime_UTR 55.0%
CTGATGTGTCACCCACCAAG+TGG + tig0019188:121610-121629 None:intergenic 55.0%
GCACGAGTTACCCCATGAGA+GGG - tig0019188:121680-121699 Msa1371250:three_prime_UTR 55.0%
CACGAGTTACCCCATGAGAG+GGG - tig0019188:121681-121700 Msa1371250:three_prime_UTR 55.0%
TGGTGAGAGGAACACCGCAA+AGG + tig0019188:122639-122658 None:intergenic 55.0%
!! GGTGGTAGAGGCACCAATGA+AGG - tig0019188:123859-123878 Msa1371250:intron 55.0%
!! CAAGAAGGGTGCTTAGCCTC+TGG - tig0019188:124065-124084 Msa1371250:intron 55.0%
GGCACGAGTTACCCCATGAG+AGG - tig0019188:121679-121698 Msa1371250:three_prime_UTR 60.0%
GGAAACGACCCCAATCGTGC+AGG - tig0019188:123926-123945 Msa1371250:intron 60.0%
AACGACCCCAATCGTGCAGG+TGG - tig0019188:123929-123948 Msa1371250:intron 60.0%
CACCTCCACCTGCACGATTG+GGG + tig0019188:123937-123956 None:intergenic 60.0%
GCACCTCCACCTGCACGATT+GGG + tig0019188:123938-123957 None:intergenic 60.0%
GACCCCAATCGTGCAGGTGG+AGG - tig0019188:123932-123951 Msa1371250:intron 65.0%
GGCACCTCCACCTGCACGAT+TGG + tig0019188:123939-123958 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019188 gene 121424 124398 121424 ID=Msa1371250;Name=Msa1371250
tig0019188 mRNA 121424 124398 121424 ID=Msa1371250-mRNA-1;Parent=Msa1371250;Name=Msa1371250-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.66|0.83|1|1|6|425|241
tig0019188 exon 121424 122037 121424 ID=Msa1371250-mRNA-1:exon:2130;Parent=Msa1371250-mRNA-1
tig0019188 exon 122318 122437 122318 ID=Msa1371250-mRNA-1:exon:2129;Parent=Msa1371250-mRNA-1
tig0019188 exon 122566 122727 122566 ID=Msa1371250-mRNA-1:exon:2128;Parent=Msa1371250-mRNA-1
tig0019188 exon 122856 123069 122856 ID=Msa1371250-mRNA-1:exon:2127;Parent=Msa1371250-mRNA-1
tig0019188 exon 123162 123198 123162 ID=Msa1371250-mRNA-1:exon:2126;Parent=Msa1371250-mRNA-1
tig0019188 exon 124395 124398 124395 ID=Msa1371250-mRNA-1:exon:2125;Parent=Msa1371250-mRNA-1
tig0019188 CDS 124395 124398 124395 ID=Msa1371250-mRNA-1:cds;Parent=Msa1371250-mRNA-1
tig0019188 CDS 123162 123198 123162 ID=Msa1371250-mRNA-1:cds;Parent=Msa1371250-mRNA-1
tig0019188 CDS 122856 123069 122856 ID=Msa1371250-mRNA-1:cds;Parent=Msa1371250-mRNA-1
tig0019188 CDS 122566 122727 122566 ID=Msa1371250-mRNA-1:cds;Parent=Msa1371250-mRNA-1
tig0019188 CDS 122318 122437 122318 ID=Msa1371250-mRNA-1:cds;Parent=Msa1371250-mRNA-1
tig0019188 CDS 121849 122037 121849 ID=Msa1371250-mRNA-1:cds;Parent=Msa1371250-mRNA-1
tig0019188 three_prime_UTR 121424 121848 121424 ID=Msa1371250-mRNA-1:three_prime_utr;Parent=Msa1371250-mRNA-1
Gene Sequence

>Msa1371250

ATGGGCAACATCATTTCCTTTGCGGTGTTCCTCTCACCATTGCCAACTTTTTACGTAATCTTCAAGAAGAAATCTGCTGAGGGATTTCAGGCACTTCCTTATGTTGTGGCACTTTTCAGTGCAATGCTTTGGATCTACTATGCATTTGTCAAAAGAGAATCTGCTCTTCTTCTTATCACCATTAACACTTTTGGAATTGTTGTTGAATCAGCTTACATTATAATGTTCCTAATTTATGCCCCAAAGAAACAAAGGCTTTCAACCATAAAACTCCTTCTCTTGCTGAATGTGTTTGGGTTTGGAGCCATGCTTCTATCAACTCTCTACCTCTCAAAGGGAGCAAAACGTCTTGCTATCATAGGATGGATTTGCCTTGTTTTCAACATAAGTGTATTTGCTGCACCTCTCTTCGTCATTAGCAAAGTCATAAGGTCGAGAAGCGTTGAATACATGCCATTTTTCTTGTCCTTCTTTTTAACCATCAATGCTGTTATGTGGTTCTTCTATGGCCTTCTCCTCAGGGATTACTATGTTGCCCTACCAAACACACTTGGATTTGTGTTCGGCATAATTCAGATGGTGGTGTATTTGATATATAGAAATGCTACACCGGTGGTAGAGGCACCAATGAAGGGTCAAGAGTTGAGTGGTGGTCATATAATTGATGTTGTGAAGATTGGAAACGACCCCAATCGTGCAGGTGGAGGTGCCGTTAGCAAAGTCTGA

Protein sequence

>Msa1371250

MGNIISFAVFLSPLPTFYVIFKKKSAEGFQALPYVVALFSAMLWIYYAFVKRESALLLITINTFGIVVESAYIIMFLIYAPKKQRLSTIKLLLLLNVFGFGAMLLSTLYLSKGAKRLAIIGWICLVFNISVFAAPLFVISKVIRSRSVEYMPFFLSFFLTINAVMWFFYGLLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVVEAPMKGQELSGGHIIDVVKIGNDPNRAGGGAVSKV*