AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706710 MtrunA17_Chr8g0386011 98.684 228 3 0 22 249 28 255 6.42e-161 446
Msa0706710 MtrunA17_Chr3g0131961 56.170 235 90 4 22 247 29 259 3.52e-91 270
Msa0706710 MtrunA17_Chr3g0131951 51.111 225 103 4 22 240 90 313 7.98e-76 234
Msa0706710 MtrunA17_Chr5g0444031 52.683 205 96 1 22 226 48 251 6.39e-73 223
Msa0706710 MtrunA17_Chr5g0428281 56.085 189 82 1 22 210 29 216 2.08e-71 219
Msa0706710 MtrunA17_Chr7g0215601 54.412 204 92 1 22 225 29 231 2.46e-71 219
Msa0706710 MtrunA17_Chr7g0214181 58.730 189 77 1 22 210 28 215 3.22e-71 219
Msa0706710 MtrunA17_Chr7g0214191 57.219 187 79 1 24 210 30 215 5.57e-68 211
Msa0706710 MtrunA17_Chr8g0386001 49.744 195 96 2 25 218 31 224 1.35e-62 197
Msa0706710 MtrunA17_Chr2g0278491 47.097 155 80 1 50 204 1 153 1.49e-44 149
Msa0706710 MtrunA17_Chr2g0295681 41.294 201 117 1 22 222 24 223 3.74e-43 146
Msa0706710 MtrunA17_Chr3g0125861 36.842 209 124 5 24 227 26 231 5.08e-39 135
Msa0706710 MtrunA17_Chr3g0119991 39.791 191 114 1 22 211 6 196 7.60e-38 132
Msa0706710 MtrunA17_Chr3g0119951 39.791 191 114 1 22 211 27 217 7.82e-38 133
Msa0706710 MtrunA17_Chr8g0388621 36.199 221 138 3 22 240 29 248 5.28e-37 130
Msa0706710 MtrunA17_Chr6g0450951 40.426 188 108 3 23 207 5 191 5.28e-37 130
Msa0706710 MtrunA17_Chr6g0450941 41.622 185 104 3 23 204 101 284 8.84e-36 129
Msa0706710 MtrunA17_Chr6g0450931 40.323 186 105 5 23 204 5 188 5.42e-35 124
Msa0706710 MtrunA17_Chr1g0159431 34.826 201 127 3 24 222 26 224 7.86e-34 122
Msa0706710 MtrunA17_Chr8g0359261 36.458 192 118 3 22 211 33 222 9.24e-34 122
Msa0706710 MtrunA17_Chr4g0059191 36.458 192 119 2 22 211 4 194 1.69e-32 117
Msa0706710 MtrunA17_Chr1g0158931 32.161 199 132 1 24 219 27 225 1.87e-31 116
Msa0706710 MtrunA17_Chr3g0126421 30.455 220 142 3 22 234 25 240 1.42e-29 111
Msa0706710 MtrunA17_Chr2g0314571 31.980 197 130 3 22 216 33 227 9.01e-29 108
Msa0706710 MtrunA17_Chr3g0126411 32.110 218 141 4 22 234 25 240 1.84e-28 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706710 AT5G50790.1 52.995 217 98 4 22 236 28 242 3.08e-80 243
Msa0706710 AT5G50800.1 55.607 214 93 2 22 234 28 240 9.17e-78 237
Msa0706710 AT5G13170.1 54.271 199 86 3 22 219 30 224 2.17e-73 226
Msa0706710 AT4G25010.1 51.835 218 104 1 22 238 28 245 3.27e-73 225
Msa0706710 AT3G48740.1 52.273 220 96 4 22 236 30 245 2.59e-72 223
Msa0706710 AT5G23660.1 52.752 218 98 4 22 236 30 245 5.91e-72 222
Msa0706710 AT2G39060.1 47.500 200 103 2 22 221 28 225 8.52e-63 197
Msa0706710 AT3G16690.1 39.896 193 114 2 24 215 26 217 1.03e-44 150
Msa0706710 AT3G16690.3 39.896 193 114 2 24 215 61 252 1.47e-44 151
Msa0706710 AT4G15920.1 41.361 191 110 2 24 213 26 215 2.75e-44 149
Msa0706710 AT5G40260.1 39.512 205 119 5 24 224 29 232 1.69e-37 132
Msa0706710 AT5G53190.1 36.683 199 121 3 24 218 27 224 5.88e-37 131
Msa0706710 AT1G21460.1 37.019 208 124 5 20 224 23 226 8.33e-37 130
Msa0706710 AT5G62850.1 38.342 193 114 4 22 211 27 217 8.92e-37 130
Msa0706710 AT4G10850.1 35.644 202 126 4 23 221 30 230 5.72e-34 123
Msa0706710 AT5G40260.2 41.916 167 93 4 24 186 29 195 4.16e-31 114
Msa0706710 AT3G14770.1 34.375 192 121 4 22 210 33 222 7.43e-31 114
Msa0706710 AT1G66770.1 32.984 191 126 2 23 211 30 220 8.19e-30 112
Msa0706710 AT1G21460.2 37.430 179 105 5 20 195 23 197 2.88e-28 107
Msa0706710 AT5G62850.2 37.500 168 100 4 22 186 27 192 3.77e-28 107
Msa0706710 AT3G28007.1 34.197 193 124 3 22 212 27 218 1.10e-26 104
Msa0706710 AT3G16690.2 33.871 124 80 2 22 144 24 146 2.20e-16 75.5

Find 77 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTATACCCTTTGTTTCTT+TGG 0.184748 4_4:+79764391 None:intergenic
CTTCTCTTGCTGAATGTGTT+TGG 0.204848 4_4:-79764230 Msa0706710:CDS
TGTATACCCTTTGTTTCTTT+GGG 0.209074 4_4:+79764392 None:intergenic
GTTTCTTTGGGGCATAAATT+AGG 0.220003 4_4:+79764404 None:intergenic
AACAATTCCAAAAGTGTTAA+TGG 0.230115 4_4:+79764453 None:intergenic
CTTATCACCATTAACACTTT+TGG 0.238695 4_4:-79764460 Msa0706710:CDS
ACGTAGTAGTAGTACAATTA+TGG 0.252437 4_4:+79763128 None:intergenic
GAAATCTGCTGAGGGATTTC+AGG 0.262581 4_4:-79764563 Msa0706710:CDS
TTCTCTTGCTGAATGTGTTT+GGG 0.283443 4_4:-79764229 Msa0706710:CDS
TCTTCTATGGCCTTCTCCTC+AGG 0.284550 4_4:-79763876 Msa0706710:CDS
TTGCTGAATGTGTTTGGGTT+TGG 0.294795 4_4:-79764224 Msa0706710:CDS
TGATTTAAATTCGGTGTAAT+TGG 0.311398 4_4:-79763218 Msa0706710:three_prime_UTR
GCTGTTATGTGGTTCTTCTA+TGG 0.316301 4_4:-79763889 Msa0706710:CDS
TGCTTTGGAGTCCCTGCATC+TGG 0.322383 4_4:+79765421 None:intergenic
TTATATGAAATTGAAAGTTT+AGG 0.337684 4_4:+79763313 None:intergenic
ATAATTGATGTTGTGAAGAT+TGG 0.346357 4_4:-79763438 Msa0706710:CDS
ATAGCAATATTTCTAAGCTT+TGG 0.359986 4_4:-79763169 Msa0706710:three_prime_UTR
CTCAACTCTTGACCCTTCAT+TGG 0.382813 4_4:+79763471 None:intergenic
TGGACTAAGGTTAACATTGA+TGG 0.383659 4_4:+79765394 None:intergenic
GGCACCTCCACCTGCACGAT+TGG 0.385028 4_4:+79763407 None:intergenic
AACATTGATGGATCCTGCTT+TGG 0.393130 4_4:+79765406 None:intergenic
GCACCTCCACCTGCACGATT+GGG 0.405651 4_4:+79763408 None:intergenic
AACACACTTGGATTTGTGTT+CGG 0.406416 4_4:-79763552 Msa0706710:CDS
GAACCACATAACAGCATTGA+TGG 0.426987 4_4:+79763897 None:intergenic
AACACAAATCCAAGTGTGTT+TGG 0.437116 4_4:+79763555 None:intergenic
CGTAGTAGTAGTACAATTAT+GGG 0.439103 4_4:+79763129 None:intergenic
CTGAAAAGTGCCACAACATA+AGG 0.441782 4_4:+79764535 None:intergenic
CTTCTATGGCCTTCTCCTCA+GGG 0.446491 4_4:-79763875 Msa0706710:CDS
GCAAAACGTCTTGCTATCAT+AGG 0.455733 4_4:-79764164 Msa0706710:CDS
TTTAACAATCGAGTACATTC+GGG 0.465861 4_4:-79763368 Msa0706710:three_prime_UTR
AAAGGTGTGTGATTTAAATT+CGG 0.469972 4_4:-79763227 Msa0706710:three_prime_UTR
TAACCATCAATGCTGTTATG+TGG 0.489473 4_4:-79763900 Msa0706710:CDS
GGTGGTAGAGGCACCAATGA+AGG 0.494736 4_4:-79763484 Msa0706710:CDS
TCAGGCACTTCCTTATGTTG+TGG 0.494964 4_4:-79764545 Msa0706710:CDS
CATAGTAATCCCTGAGGAGA+AGG 0.500559 4_4:+79763866 None:intergenic
TTCATTGGTGCCTCTACCAC+CGG 0.508469 4_4:+79763486 None:intergenic
AAATGCTACACCGGTGGTAG+AGG 0.509728 4_4:-79763496 Msa0706710:CDS
GAGTCCCTGCATCTGGACTA+AGG 0.511077 4_4:+79765428 None:intergenic
CCATGCAGAGCAAAGTCATA+AGG 0.515167 4_4:-79763966 Msa0706710:intron
GACCCCAATCGTGCAGGTGG+AGG 0.519554 4_4:-79763411 Msa0706710:CDS
GTATACCCTTTGTTTCTTTG+GGG 0.522852 4_4:+79764393 None:intergenic
GCATCTGGACTAAGGTCAGT+TGG 0.523790 4_4:+79765436 None:intergenic
CAAGAAGGGTGCTTAGCCTC+TGG 0.528977 4_4:-79763278 Msa0706710:three_prime_UTR
TCAACTCTCTACCTCTCAAA+GGG 0.539975 4_4:-79764188 Msa0706710:CDS
TAATATTGTAAAATGCAAGA+AGG 0.541132 4_4:-79763293 Msa0706710:three_prime_UTR
TATGGGAGTGTTACGATACA+TGG 0.541540 4_4:+79763146 None:intergenic
AGATGCAGGGACTCCAAAGC+AGG 0.543677 4_4:-79765419 Msa0706710:CDS
TTAAAATCAGACTTTGCTAA+CGG 0.544654 4_4:+79763386 None:intergenic
TTCAAGAAGAAATCTGCTGA+GGG 0.551711 4_4:-79764571 Msa0706710:CDS
TGTGTTCGGCATAATTCAGA+TGG 0.552676 4_4:-79763538 Msa0706710:CDS
ATCAACTCTCTACCTCTCAA+AGG 0.553313 4_4:-79764189 Msa0706710:CDS
GGAAACGACCCCAATCGTGC+AGG 0.560744 4_4:-79763417 Msa0706710:CDS
AATATTGTAAAATGCAAGAA+GGG 0.562824 4_4:-79763292 Msa0706710:three_prime_UTR
ACTGACCTTAGTCCAGATGC+AGG 0.566013 4_4:-79765433 Msa0706710:CDS
TTTATGCCCCAAAGAAACAA+AGG 0.567569 4_4:-79764399 Msa0706710:CDS
AACGACCCCAATCGTGCAGG+TGG 0.576027 4_4:-79763414 Msa0706710:CDS
TTATGCCCCAAAGAAACAAA+GGG 0.578048 4_4:-79764398 Msa0706710:intron
AACGTCTTGCTATCATAGGA+TGG 0.590309 4_4:-79764160 Msa0706710:CDS
GTGGTAGAGGCACCAATGAA+GGG 0.591402 4_4:-79763483 Msa0706710:CDS
ATGCAGCTACCAAACACACT+TGG 0.593312 4_4:-79763564 Msa0706710:intron
CTTCAAGAAGAAATCTGCTG+AGG 0.593379 4_4:-79764572 Msa0706710:CDS
CACCTCCACCTGCACGATTG+GGG 0.600426 4_4:+79763409 None:intergenic
GAACATCGATTACGTATACA+AGG 0.615675 4_4:+79763041 None:intergenic
CAAACACATTCAGCAAGAGA+AGG 0.625179 4_4:+79764231 None:intergenic
AAACTAAATACTTATACCAG+AGG 0.635792 4_4:+79763262 None:intergenic
GATATATAGAAATGCTACAC+CGG 0.637638 4_4:-79763505 Msa0706710:CDS
GTAGAGAGTTGATAGAAGCA+TGG 0.638407 4_4:+79764199 None:intergenic
ATACTTACAATGACGAAGAG+AGG 0.639522 4_4:+79764101 None:intergenic
ATACACTTATGTTGAAAACA+AGG 0.640633 4_4:+79764132 None:intergenic
GTTCGGCATAATTCAGATGG+TGG 0.664212 4_4:-79763535 Msa0706710:CDS
CTTGAAATGAGTTTGACTGA+GGG 0.667963 4_4:+79763073 None:intergenic
AAGGGTCAAGAGTTGAGTGG+TGG 0.679444 4_4:-79763465 Msa0706710:CDS
CTGACCTTAGTCCAGATGCA+GGG 0.692991 4_4:-79765432 Msa0706710:CDS
ACTTGAAATGAGTTTGACTG+AGG 0.693520 4_4:+79763072 None:intergenic
ATATAGAAATGCTACACCGG+TGG 0.693921 4_4:-79763502 Msa0706710:CDS
ATGAAGGGTCAAGAGTTGAG+TGG 0.696772 4_4:-79763468 Msa0706710:CDS
CGGCAACATAGTAATCCCTG+AGG 0.770046 4_4:+79763860 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! NNNNNNTTTCTTTTTATAAG+CGG - chr4_4:79763352-79763371 Msa0706710:three_prime_UTR 10.0%
!! AAAAAATCAAATATATATGT+AGG - chr4_4:79763600-79763619 Msa0706710:intron 10.0%
!!! TAGTAAAGTTTTTTTTTATA+AGG + chr4_4:79764102-79764121 None:intergenic 10.0%
!! TATCAAATATTAAAGTTAAA+GGG + chr4_4:79764642-79764661 None:intergenic 10.0%
!! TTATCAAATATTAAAGTTAA+AGG + chr4_4:79764643-79764662 None:intergenic 10.0%
!!! TAGTTTTATTATTAATGTAA+AGG - chr4_4:79765173-79765192 Msa0706710:intron 10.0%
!!! ATTTTAATTAGCATGTTAAT+TGG - chr4_4:79763475-79763494 Msa0706710:CDS 15.0%
!! TAATTTACAAGAAAACAAAA+TGG + chr4_4:79763747-79763766 None:intergenic 15.0%
!! ATATATACATATATACGTTT+AGG + chr4_4:79763796-79763815 None:intergenic 15.0%
!!! ATTATATGAATATTGACTTA+CGG + chr4_4:79764581-79764600 None:intergenic 15.0%
!!! AATTAGAAAACTTTTCATAT+AGG - chr4_4:79764788-79764807 Msa0706710:intron 15.0%
!! TTATATGAAATTGAAAGTTT+AGG + chr4_4:79765108-79765127 None:intergenic 15.0%
!! ATATGTTTCATATTCCTTTA+AGG + chr4_4:79763104-79763123 None:intergenic 20.0%
!! ATGAAACATATGTGATAATT+TGG - chr4_4:79763113-79763132 Msa0706710:three_prime_UTR 20.0%
!!! AAAAGCTAACGTTAAATTTT+AGG + chr4_4:79763429-79763448 None:intergenic 20.0%
!! ATGTATATATTTGTATATGC+AGG - chr4_4:79763806-79763825 Msa0706710:intron 20.0%
!! TATCACTTACTCATTTAATT+GGG + chr4_4:79764400-79764419 None:intergenic 20.0%
!! TTATCACTTACTCATTTAAT+TGG + chr4_4:79764401-79764420 None:intergenic 20.0%
!! GTTAACGTAATTAAGAAAAT+TGG + chr4_4:79764763-79764782 None:intergenic 20.0%
!!! ATTGAATCTTTTCTTCTTTT+TGG - chr4_4:79764826-79764845 Msa0706710:intron 20.0%
!! TAATATTGTAAAATGCAAGA+AGG - chr4_4:79765125-79765144 Msa0706710:intron 20.0%
!! AATATTGTAAAATGCAAGAA+GGG - chr4_4:79765126-79765145 Msa0706710:intron 20.0%
!!! ATTTTACTCTAAAGAACGTT+TGG + chr4_4:79763457-79763476 None:intergenic 25.0%
! AATCTGTATGTATGTTAACA+CGG + chr4_4:79763503-79763522 None:intergenic 25.0%
!!! CTTTTTGTCATTGTTTTTAC+AGG - chr4_4:79763677-79763696 Msa0706710:intron 25.0%
! AACAAAATGGTTACTTACAA+TGG + chr4_4:79763734-79763753 None:intergenic 25.0%
! TTGAAGATTACGTAAAAAGT+TGG + chr4_4:79763832-79763851 None:intergenic 25.0%
!!! AACAATTCCAAAAGTGTTAA+TGG + chr4_4:79763968-79763987 None:intergenic 25.0%
! ATACACTTATGTTGAAAACA+AGG + chr4_4:79764289-79764308 None:intergenic 25.0%
! AAAAAGAAGGACAAGAAAAA+TGG + chr4_4:79764499-79764518 None:intergenic 25.0%
! CATACAAAGTACAAACAAAT+GGG + chr4_4:79764611-79764630 None:intergenic 25.0%
! TTTAATGTGCTTCATTAATG+TGG - chr4_4:79764694-79764713 Msa0706710:intron 25.0%
! GTAATTAAGAAAATTGGTAG+GGG + chr4_4:79764757-79764776 None:intergenic 25.0%
! CGTAATTAAGAAAATTGGTA+GGG + chr4_4:79764758-79764777 None:intergenic 25.0%
! ACGTAATTAAGAAAATTGGT+AGG + chr4_4:79764759-79764778 None:intergenic 25.0%
! ATAATTGATGTTGTGAAGAT+TGG - chr4_4:79764980-79764999 Msa0706710:intron 25.0%
! TTAAAATCAGACTTTGCTAA+CGG + chr4_4:79765035-79765054 None:intergenic 25.0%
!! TTTTAACAATCGAGTACATT+CGG - chr4_4:79765049-79765068 Msa0706710:intron 25.0%
! AAACTAAATACTTATACCAG+AGG + chr4_4:79765159-79765178 None:intergenic 25.0%
!! AAAGGTGTGTGATTTAAATT+CGG - chr4_4:79765191-79765210 Msa0706710:intron 25.0%
!!! TGATTTAAATTCGGTGTAAT+TGG - chr4_4:79765200-79765219 Msa0706710:intron 25.0%
!! ATAGCAATATTTCTAAGCTT+TGG - chr4_4:79765249-79765268 Msa0706710:intron 25.0%
!! CAATTCGTTTTCATTAATAC+TGG + chr4_4:79765402-79765421 None:intergenic 25.0%
!!! TGTTTTAGTAATTTTGTCGT+TGG - chr4_4:79765420-79765439 Msa0706710:CDS 25.0%
!!! GTTTTAGTAATTTTGTCGTT+GGG - chr4_4:79765421-79765440 Msa0706710:CDS 25.0%
ATTCGATGGAACATATGTTT+CGG + chr4_4:79763206-79763225 None:intergenic 30.0%
!! ATCTAGTTTGTTATGCTTGT+TGG - chr4_4:79763384-79763403 Msa0706710:exon 30.0%
TAACATACATACAGATTGCA+TGG - chr4_4:79763506-79763525 Msa0706710:CDS 30.0%
! CTTATCACCATTAACACTTT+TGG - chr4_4:79763958-79763977 Msa0706710:CDS 30.0%
! TGTATACCCTTTGTTTCTTT+GGG + chr4_4:79764029-79764048 None:intergenic 30.0%
!! AGCATTGATGGTTAAAAAGA+AGG + chr4_4:79764512-79764531 None:intergenic 30.0%
CCATACAAAGTACAAACAAA+TGG + chr4_4:79764612-79764631 None:intergenic 30.0%
CCATTTGTTTGTACTTTGTA+TGG - chr4_4:79764609-79764628 Msa0706710:intron 30.0%
! CACTTAGATGTTTCTTTTCA+TGG + chr4_4:79764725-79764744 None:intergenic 30.0%
AGAAACATCTAAGTGCTATA+TGG - chr4_4:79764730-79764749 Msa0706710:intron 30.0%
GATATATAGAAATGCTACAC+CGG - chr4_4:79764913-79764932 Msa0706710:intron 30.0%
TTTAACAATCGAGTACATTC+GGG - chr4_4:79765050-79765069 Msa0706710:intron 30.0%
CGTAGTAGTAGTACAATTAT+GGG + chr4_4:79765292-79765311 None:intergenic 30.0%
ACGTAGTAGTAGTACAATTA+TGG + chr4_4:79765293-79765312 None:intergenic 30.0%
TGGACTAAGGTTAACATTGA+TGG + chr4_4:79763027-79763046 None:intergenic 35.0%
! TCAACAGCACTTAGTGTTTT+TGG - chr4_4:79763078-79763097 Msa0706710:three_prime_UTR 35.0%
!!! CTTAGTGTTTTTGGCCTTAA+AGG - chr4_4:79763087-79763106 Msa0706710:three_prime_UTR 35.0%
! AGCTTCTAAAAAAGCTATGC+TGG + chr4_4:79763142-79763161 None:intergenic 35.0%
! TATGTTTCGGAGTGTTATTG+TGG + chr4_4:79763193-79763212 None:intergenic 35.0%
CAATAATAATGCGCATTCGA+TGG + chr4_4:79763220-79763239 None:intergenic 35.0%
!! CATTTGTTAACAAGTGCTGA+TGG - chr4_4:79763639-79763658 Msa0706710:intron 35.0%
TTCAAGAAGAAATCTGCTGA+GGG - chr4_4:79763847-79763866 Msa0706710:intron 35.0%
!! GTTTCTTTGGGGCATAAATT+AGG + chr4_4:79764017-79764036 None:intergenic 35.0%
TTTATGCCCCAAAGAAACAA+AGG - chr4_4:79764019-79764038 Msa0706710:intron 35.0%
TTATGCCCCAAAGAAACAAA+GGG - chr4_4:79764020-79764039 Msa0706710:intron 35.0%
! GTATACCCTTTGTTTCTTTG+GGG + chr4_4:79764028-79764047 None:intergenic 35.0%
! GTGTATACCCTTTGTTTCTT+TGG + chr4_4:79764030-79764049 None:intergenic 35.0%
TTCTCTTGCTGAATGTGTTT+GGG - chr4_4:79764189-79764208 Msa0706710:CDS 35.0%
ATACTTACAATGACGAAGAG+AGG + chr4_4:79764320-79764339 None:intergenic 35.0%
TAACCATCAATGCTGTTATG+TGG - chr4_4:79764518-79764537 Msa0706710:CDS 35.0%
AACACAAATCCAAGTGTGTT+TGG + chr4_4:79764866-79764885 None:intergenic 35.0%
AACACACTTGGATTTGTGTT+CGG - chr4_4:79764866-79764885 Msa0706710:intron 35.0%
! TTCGGTGTAATTGGCAAAAA+TGG - chr4_4:79765209-79765228 Msa0706710:intron 35.0%
CTTGAAATGAGTTTGACTGA+GGG + chr4_4:79765348-79765367 None:intergenic 35.0%
ACTTGAAATGAGTTTGACTG+AGG + chr4_4:79765349-79765368 None:intergenic 35.0%
! GAACATCGATTACGTATACA+AGG + chr4_4:79765380-79765399 None:intergenic 35.0%
! AACATTGATGGATCCTGCTT+TGG + chr4_4:79763015-79763034 None:intergenic 40.0%
ACCTTAGTCCAACCAATATC+CGG - chr4_4:79763036-79763055 Msa0706710:three_prime_UTR 40.0%
ATACAGATTGCATGGCGATA+TGG - chr4_4:79763514-79763533 Msa0706710:CDS 40.0%
AGGCAACATCATTTCCTTTG+CGG - chr4_4:79763697-79763716 Msa0706710:intron 40.0%
TGGTTACTTACAATGGTGAG+AGG + chr4_4:79763727-79763746 None:intergenic 40.0%
CTTCAAGAAGAAATCTGCTG+AGG - chr4_4:79763846-79763865 Msa0706710:intron 40.0%
!! CTGAAAAGTGCCACAACATA+AGG + chr4_4:79763886-79763905 None:intergenic 40.0%
! CACTTTTCAGTGCAATGCTT+TGG - chr4_4:79763896-79763915 Msa0706710:CDS 40.0%
! CAGCAAGAGAAGGAGTTTTA+TGG + chr4_4:79764180-79764199 None:intergenic 40.0%
CAAACACATTCAGCAAGAGA+AGG + chr4_4:79764190-79764209 None:intergenic 40.0%
CTTCTCTTGCTGAATGTGTT+TGG - chr4_4:79764188-79764207 Msa0706710:CDS 40.0%
! TTGCTGAATGTGTTTGGGTT+TGG - chr4_4:79764194-79764213 Msa0706710:CDS 40.0%
!! GTAGAGAGTTGATAGAAGCA+TGG + chr4_4:79764222-79764241 None:intergenic 40.0%
ATCAACTCTCTACCTCTCAA+AGG - chr4_4:79764229-79764248 Msa0706710:CDS 40.0%
TCAACTCTCTACCTCTCAAA+GGG - chr4_4:79764230-79764249 Msa0706710:CDS 40.0%
! GCAAAACGTCTTGCTATCAT+AGG - chr4_4:79764254-79764273 Msa0706710:intron 40.0%
! AACGTCTTGCTATCATAGGA+TGG - chr4_4:79764258-79764277 Msa0706710:intron 40.0%
! GAACCACATAACAGCATTGA+TGG + chr4_4:79764524-79764543 None:intergenic 40.0%
GCTGTTATGTGGTTCTTCTA+TGG - chr4_4:79764529-79764548 Msa0706710:CDS 40.0%
TGTGTTCGGCATAATTCAGA+TGG - chr4_4:79764880-79764899 Msa0706710:intron 40.0%
ATATAGAAATGCTACACCGG+TGG - chr4_4:79764916-79764935 Msa0706710:intron 40.0%
!! TATGGGAGTGTTACGATACA+TGG + chr4_4:79765275-79765294 None:intergenic 40.0%
! TCCGGATATTGGTTGGACTA+AGG + chr4_4:79763040-79763059 None:intergenic 45.0%
! GTGCTGTTGAGAATGTCTAC+TGG + chr4_4:79763068-79763087 None:intergenic 45.0%
! CGGAGTGTTATTGTGGAAGT+AGG + chr4_4:79763186-79763205 None:intergenic 45.0%
GAAATCTGCTGAGGGATTTC+AGG - chr4_4:79763855-79763874 Msa0706710:intron 45.0%
TCAGGCACTTCCTTATGTTG+TGG - chr4_4:79763873-79763892 Msa0706710:CDS 45.0%
CCTTATGACTTTGCTCTGCA+TGG + chr4_4:79764455-79764474 None:intergenic 45.0%
CCATGCAGAGCAAAGTCATA+AGG - chr4_4:79764452-79764471 Msa0706710:CDS 45.0%
CATAGTAATCCCTGAGGAGA+AGG + chr4_4:79764555-79764574 None:intergenic 45.0%
ATGCAGCTACCAAACACACT+TGG - chr4_4:79764854-79764873 Msa0706710:intron 45.0%
GTTCGGCATAATTCAGATGG+TGG - chr4_4:79764883-79764902 Msa0706710:intron 45.0%
CTCAACTCTTGACCCTTCAT+TGG + chr4_4:79764950-79764969 None:intergenic 45.0%
ATGAAGGGTCAAGAGTTGAG+TGG - chr4_4:79764950-79764969 Msa0706710:intron 45.0%
GCATCTGGACTAAGGTCAGT+TGG + chr4_4:79762985-79763004 None:intergenic 50.0%
ACTGACCTTAGTCCAGATGC+AGG - chr4_4:79762985-79763004 Msa0706710:three_prime_UTR 50.0%
CTGACCTTAGTCCAGATGCA+GGG - chr4_4:79762986-79763005 Msa0706710:three_prime_UTR 50.0%
TACTGGCACTCTCCGGATAT+TGG + chr4_4:79763051-79763070 None:intergenic 50.0%
GAATGTCTACTGGCACTCTC+CGG + chr4_4:79763058-79763077 None:intergenic 50.0%
! GACGTTTTGCTCCCTTTGAG+AGG + chr4_4:79764244-79764263 None:intergenic 50.0%
TCTTCTATGGCCTTCTCCTC+AGG - chr4_4:79764542-79764561 Msa0706710:CDS 50.0%
CTTCTATGGCCTTCTCCTCA+GGG - chr4_4:79764543-79764562 Msa0706710:CDS 50.0%
CGGCAACATAGTAATCCCTG+AGG + chr4_4:79764561-79764580 None:intergenic 50.0%
AAATGCTACACCGGTGGTAG+AGG - chr4_4:79764922-79764941 Msa0706710:intron 50.0%
! TTCATTGGTGCCTCTACCAC+CGG + chr4_4:79764935-79764954 None:intergenic 50.0%
!! GTGGTAGAGGCACCAATGAA+GGG - chr4_4:79764935-79764954 Msa0706710:intron 50.0%
AAGGGTCAAGAGTTGAGTGG+TGG - chr4_4:79764953-79764972 Msa0706710:intron 50.0%
GAGTCCCTGCATCTGGACTA+AGG + chr4_4:79762993-79763012 None:intergenic 55.0%
!! TGCTTTGGAGTCCCTGCATC+TGG + chr4_4:79763000-79763019 None:intergenic 55.0%
AGATGCAGGGACTCCAAAGC+AGG - chr4_4:79762999-79763018 Msa0706710:three_prime_UTR 55.0%
GGCACTCTCCGGATATTGGT+TGG + chr4_4:79763047-79763066 None:intergenic 55.0%
TGGTGAGAGGAACACCGCAA+AGG + chr4_4:79763714-79763733 None:intergenic 55.0%
!! GGTGGTAGAGGCACCAATGA+AGG - chr4_4:79764934-79764953 Msa0706710:intron 55.0%
!! CAAGAAGGGTGCTTAGCCTC+TGG - chr4_4:79765140-79765159 Msa0706710:intron 55.0%
GGAAACGACCCCAATCGTGC+AGG - chr4_4:79765001-79765020 Msa0706710:intron 60.0%
AACGACCCCAATCGTGCAGG+TGG - chr4_4:79765004-79765023 Msa0706710:intron 60.0%
CACCTCCACCTGCACGATTG+GGG + chr4_4:79765012-79765031 None:intergenic 60.0%
GCACCTCCACCTGCACGATT+GGG + chr4_4:79765013-79765032 None:intergenic 60.0%
GACCCCAATCGTGCAGGTGG+AGG - chr4_4:79765007-79765026 Msa0706710:intron 65.0%
GGCACCTCCACCTGCACGAT+TGG + chr4_4:79765014-79765033 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79762967 79765473 79762967 ID=Msa0706710;Name=Msa0706710
chr4_4 mRNA 79762967 79765473 79762967 ID=Msa0706710-mRNA-1;Parent=Msa0706710;Name=Msa0706710-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.75|0.8|0.8|0.75|1|5|425|249
chr4_4 exon 79762967 79763580 79762967 ID=Msa0706710-mRNA-1:exon:25757;Parent=Msa0706710-mRNA-1
chr4_4 exon 79763861 79763980 79763861 ID=Msa0706710-mRNA-1:exon:25756;Parent=Msa0706710-mRNA-1
chr4_4 exon 79764109 79764270 79764109 ID=Msa0706710-mRNA-1:exon:25755;Parent=Msa0706710-mRNA-1
chr4_4 exon 79764399 79764612 79764399 ID=Msa0706710-mRNA-1:exon:25754;Parent=Msa0706710-mRNA-1
chr4_4 exon 79765409 79765473 79765409 ID=Msa0706710-mRNA-1:exon:25753;Parent=Msa0706710-mRNA-1
chr4_4 CDS 79765409 79765473 79765409 ID=Msa0706710-mRNA-1:cds;Parent=Msa0706710-mRNA-1
chr4_4 CDS 79764399 79764612 79764399 ID=Msa0706710-mRNA-1:cds;Parent=Msa0706710-mRNA-1
chr4_4 CDS 79764109 79764270 79764109 ID=Msa0706710-mRNA-1:cds;Parent=Msa0706710-mRNA-1
chr4_4 CDS 79763861 79763980 79763861 ID=Msa0706710-mRNA-1:cds;Parent=Msa0706710-mRNA-1
chr4_4 CDS 79763392 79763580 79763392 ID=Msa0706710-mRNA-1:cds;Parent=Msa0706710-mRNA-1
chr4_4 three_prime_UTR 79762967 79763391 79762967 ID=Msa0706710-mRNA-1:three_prime_utr;Parent=Msa0706710-mRNA-1
Gene Sequence

>Msa0706710

ATGGGGCTTGATCAGCCAACTGACCTTAGTCCAGATGCAGGGACTCCAAAGCAGGATCCATCAATGCCAACTTTTTACGTAATCTTCAAGAAGAAATCTGCTGAGGGATTTCAGGCACTTCCTTATGTTGTGGCACTTTTCAGTGCAATGCTTTGGATCTACTATGCATTTGTCAAAAGAGAATCTGCTCTTCTTCTTATCACCATTAACACTTTTGGAATTGTTGTTGAATCAGCTTACATTATAATGTTCCTAATTTATGCCCCAAAGAAACAAAGGCTTTCAACCATAAAACTCCTTCTCTTGCTGAATGTGTTTGGGTTTGGAGCCATGCTTCTATCAACTCTCTACCTCTCAAAGGGAGCAAAACGTCTTGCTATCATAGGATGGATTTGCCTTGTTTTCAACATAAGTGTATTTGCTGCACCTCTCTTCGTCATTAGCAAAGTCATAAGGTCGAGAAGCGTTGAATACATGCCATTTTTCTTGTCCTTCTTTTTAACCATCAATGCTGTTATGTGGTTCTTCTATGGCCTTCTCCTCAGGGATTACTATGTTGCCCTACCAAACACACTTGGATTTGTGTTCGGCATAATTCAGATGGTGGTGTATTTGATATATAGAAATGCTACACCGGTGGTAGAGGCACCAATGAAGGGTCAAGAGTTGAGTGGTGGTCATATAATTGATGTTGTGAAGATTGGAAACGACCCCAATCGTGCAGGTGGAGGTGCCGTTAGCAAAGTCTGA

Protein sequence

>Msa0706710

MGLDQPTDLSPDAGTPKQDPSMPTFYVIFKKKSAEGFQALPYVVALFSAMLWIYYAFVKRESALLLITINTFGIVVESAYIIMFLIYAPKKQRLSTIKLLLLLNVFGFGAMLLSTLYLSKGAKRLAIIGWICLVFNISVFAAPLFVISKVIRSRSVEYMPFFLSFFLTINAVMWFFYGLLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVVEAPMKGQELSGGHIIDVVKIGNDPNRAGGGAVSKV*