AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0736930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736930 MtrunA17_Chr5g0434671 97.638 254 6 0 1 254 1 254 0.0 509
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736930 AT1G66330.1 60.870 161 52 1 104 253 81 241 1.37e-56 186
Msa0736930 AT1G66330.2 60.870 161 52 1 104 253 81 241 1.37e-56 186

Find 52 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATTCTGTCCCTAAAA+AGG 0.241678 5_1:-53604993 None:intergenic
GAGAAACTTTGCATCGTTAC+AGG 0.311814 5_1:-53604488 None:intergenic
CCGAAACCAATCATTGAATA+AGG 0.320915 5_1:-53604059 None:intergenic
CTGGAGTGACGGGGCCTTAG+AGG 0.337435 5_1:+53605420 Msa0736930:CDS
TCAAGGGTTAGACTCGAAAA+TGG 0.338957 5_1:+53603998 Msa0736930:CDS
ATCTTCCATGGCACGTTGCT+TGG 0.348175 5_1:-53606495 None:intergenic
GTCTTGGAGATTAAACTAAC+TGG 0.351920 5_1:-53604100 None:intergenic
ACAGAATTTCTCAAACTTGA+TGG 0.355828 5_1:+53605004 Msa0736930:CDS
GATCAACCTTATTCAATGAT+TGG 0.357803 5_1:+53604053 Msa0736930:CDS
ATACAGTAGCAATACGATTA+AGG 0.363525 5_1:-53605247 None:intergenic
CCTTATTCAATGATTGGTTT+CGG 0.365622 5_1:+53604059 Msa0736930:CDS
GATCGTGTTCGTTCTGTTCG+TGG 0.367759 5_1:+53604442 Msa0736930:CDS
ATTTAACAGATTTACCTCTA+AGG 0.373384 5_1:-53605434 None:intergenic
TGATCTTCTGATGGCACTTA+CGG 0.391058 5_1:+53603880 Msa0736930:exon
ATATCACCTCCAAGGACATA+AGG 0.415173 5_1:-53606520 None:intergenic
ATATCCACTGCAGATCTTGA+AGG 0.418058 5_1:+53605357 Msa0736930:intron
CCGATGAGCACTGGAGTGAC+GGG 0.435635 5_1:+53605410 Msa0736930:CDS
AGATATTTCAAGTGCTATGA+AGG 0.439383 5_1:+53603834 Msa0736930:five_prime_UTR
TACTTTCTTTGATCTTCTGA+TGG 0.439563 5_1:+53603871 Msa0736930:exon
TCTGTCTCATGTAAATCAAC+AGG 0.443072 5_1:+53604127 Msa0736930:CDS
AACTGTATTCTGTTTATCCT+TGG 0.449791 5_1:-53603974 None:intergenic
CTGCATAGCTCGGGCAAGAA+AGG 0.454178 5_1:+53605181 Msa0736930:intron
GGAAGATGCCCTTATGTCCT+TGG 0.463046 5_1:+53606511 Msa0736930:CDS
GATTGGTTTCGGTTCGTCAA+TGG 0.464830 5_1:+53604070 Msa0736930:CDS
ACATGAGACAGAAGATGTCT+TGG 0.481154 5_1:-53604116 None:intergenic
TATCACCTCCAAGGACATAA+GGG 0.487860 5_1:-53606519 None:intergenic
GCCGATGAGCACTGGAGTGA+CGG 0.489465 5_1:+53605409 Msa0736930:CDS
GTTGCTCTATTAGTCAAGAT+AGG 0.494347 5_1:-53603923 None:intergenic
ACGTTGCTTGGCACGGAAGT+CGG 0.495141 5_1:-53606483 None:intergenic
ATGATGTTTCTGATTTAACT+AGG 0.506246 5_1:+53604191 Msa0736930:CDS
GGAAGTAAATGAAAATAGGT+AGG 0.511324 5_1:-53602944 None:intergenic
ATTTCTTCAGTGGCATAATG+AGG 0.515220 5_1:+53604942 Msa0736930:intron
CCATGGCACGTTGCTTGGCA+CGG 0.523891 5_1:-53606490 None:intergenic
AAAGTGCTGCCGATGAGCAC+TGG 0.524125 5_1:+53605401 Msa0736930:CDS
TAACTATGCCTTTGTTCCAC+AGG 0.536157 5_1:+53602985 Msa0736930:five_prime_UTR
CTTCAGTGGCATAATGAGGA+TGG 0.542595 5_1:+53604946 Msa0736930:intron
TTTCAAGTGCTATGAAGGCC+AGG 0.543283 5_1:+53603839 Msa0736930:five_prime_UTR
GGACATAAGGGCATCTTCCA+TGG 0.546770 5_1:-53606507 None:intergenic
CCCGTCACTCCAGTGCTCAT+CGG 0.553203 5_1:-53605410 None:intergenic
CCGTGCCAAGCAACGTGCCA+TGG 0.568141 5_1:+53606490 Msa0736930:CDS
CGATGAGCACTGGAGTGACG+GGG 0.596211 5_1:+53605411 Msa0736930:CDS
AGTATAAAATATCACCTCCA+AGG 0.600169 5_1:-53606528 None:intergenic
GCTTGGCACGGAAGTCGGCA+AGG 0.602685 5_1:-53606478 None:intergenic
AAAACTGACCTGTGGAACAA+AGG 0.609208 5_1:-53602993 None:intergenic
TCTTGCTCACCATCATGTCA+TGG 0.617464 5_1:-53606659 None:intergenic
GCAACACTTTGTAGATCACA+TGG 0.639736 5_1:+53603941 Msa0736930:CDS
AGATGCCCTTATGTCCTTGG+AGG 0.646483 5_1:+53606514 Msa0736930:CDS
ACGGCAAACAAAGTTTCAAG+CGG 0.658042 5_1:+53603899 Msa0736930:CDS
ACGATGCAAAGTTTCTCTCA+CGG 0.666602 5_1:+53604494 Msa0736930:CDS
CACATGGTTCTTCATCACCA+AGG 0.677691 5_1:+53603957 Msa0736930:CDS
AAGAAAGTATGAGATACACC+TGG 0.684979 5_1:-53603857 None:intergenic
GATACTGAGAAAATCGACCG+TGG 0.757796 5_1:+53605203 Msa0736930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAACTTAATTAGTTA+AGG - chr5_1:53603179-53603198 None:intergenic 10.0%
!!! AATATATTTCTAAAAAGATA+TGG - chr5_1:53604629-53604648 None:intergenic 10.0%
!! TTATTTATAATTCATATGAA+TGG + chr5_1:53606399-53606418 Msa0736930:intron 10.0%
!! ATAGAACAAATTTATTTATT+TGG - chr5_1:53606609-53606628 None:intergenic 10.0%
!!! TTAGTTTTTCAACTTTTTTT+TGG - chr5_1:53602968-53602987 None:intergenic 15.0%
!!! GTTTTTTATACATCTAATAT+TGG + chr5_1:53603190-53603209 Msa0736930:intron 15.0%
!! AGTTTGACATATAATAAAAT+TGG - chr5_1:53604290-53604309 None:intergenic 15.0%
!!! ATTTTATTATATGTCAAACT+AGG + chr5_1:53604290-53604309 Msa0736930:intron 15.0%
!!! TCTTTTTAGAAATATATTGT+TGG + chr5_1:53604631-53604650 Msa0736930:intron 15.0%
!!! ACATTTAATTATCTAGAATA+TGG - chr5_1:53604852-53604871 None:intergenic 15.0%
!! TATATCACATTATTTAAACA+AGG - chr5_1:53605042-53605061 None:intergenic 15.0%
!! AAAAAATAGTTACATTTCAA+TGG - chr5_1:53605094-53605113 None:intergenic 15.0%
!!! TCACTTTTAATCAATTTTTT+AGG - chr5_1:53605971-53605990 None:intergenic 15.0%
!!! TTTTGGAAGTAAATGAAAAT+AGG - chr5_1:53602951-53602970 None:intergenic 20.0%
!! TGATTCTTAAAAGAAATGTT+TGG + chr5_1:53603332-53603351 Msa0736930:intron 20.0%
!! TTAAAAGAAATGTTTGGATA+AGG + chr5_1:53603338-53603357 Msa0736930:intron 20.0%
!! AAAGTTATGTTTAACTACTA+AGG - chr5_1:53603529-53603548 None:intergenic 20.0%
!!! TTTTAATTATGCAATGCTTA+GGG - chr5_1:53603563-53603582 None:intergenic 20.0%
!!! TTTTTAATTATGCAATGCTT+AGG - chr5_1:53603564-53603583 None:intergenic 20.0%
!!! AATTTATCTGTTTTCTTTAG+AGG + chr5_1:53603666-53603685 Msa0736930:intron 20.0%
!! TAGTGAAATTCACAATTTAT+GGG - chr5_1:53603756-53603775 None:intergenic 20.0%
!! ATAGTGAAATTCACAATTTA+TGG - chr5_1:53603757-53603776 None:intergenic 20.0%
!! CTAAAAAAATGGTAACAAAA+TGG - chr5_1:53604264-53604283 None:intergenic 20.0%
!! AAAATTGGCAACTAAAAAAA+TGG - chr5_1:53604275-53604294 None:intergenic 20.0%
!! TTTCAATTACAATTGAAAAC+TGG + chr5_1:53604352-53604371 Msa0736930:intron 20.0%
!!! TTAACTAATTATTTCTTCAG+TGG + chr5_1:53604932-53604951 Msa0736930:intron 20.0%
!!! TCTAGAATTTTCAATTTTTC+TGG + chr5_1:53605276-53605295 Msa0736930:intron 20.0%
!! GAAAGAATACTATTTATCAA+TGG + chr5_1:53605307-53605326 Msa0736930:intron 20.0%
!! ATATTTGTGTAACAATTTGT+TGG + chr5_1:53605542-53605561 Msa0736930:intron 20.0%
!!! AGTGAAAATAGATTTTATAC+AGG + chr5_1:53605676-53605695 Msa0736930:intron 20.0%
!! AAAAATTGATTAAAAGTGAG+AGG + chr5_1:53605972-53605991 Msa0736930:intron 20.0%
!!! CTTAAAAATTGCTTTTATTG+TGG - chr5_1:53606064-53606083 None:intergenic 20.0%
!! TGTATGGGATATTAATATAA+AGG - chr5_1:53606347-53606366 None:intergenic 20.0%
!! AGTTTAAAAGTTATGTCAAA+AGG - chr5_1:53606442-53606461 None:intergenic 20.0%
! TGATTACTGATCAGAAAATT+AGG + chr5_1:53603219-53603238 Msa0736930:intron 25.0%
! GATTACTGATCAGAAAATTA+GGG + chr5_1:53603220-53603239 Msa0736930:intron 25.0%
!!! ACTATATGTTGCTTTGAAAT+AGG + chr5_1:53603248-53603267 Msa0736930:intron 25.0%
! ATAGGAAGATGATTAACTTA+TGG + chr5_1:53603266-53603285 Msa0736930:intron 25.0%
! TAGGAAGATGATTAACTTAT+GGG + chr5_1:53603267-53603286 Msa0736930:intron 25.0%
! GACTTATATTCACTGATAAA+TGG + chr5_1:53603374-53603393 Msa0736930:intron 25.0%
!!! GTGTTTTTGAGTGAAAATTA+TGG + chr5_1:53603719-53603738 Msa0736930:intron 25.0%
!! TAAACAGAATACAGTTTTCA+AGG + chr5_1:53603981-53604000 Msa0736930:CDS 25.0%
!! AAACAGAATACAGTTTTCAA+GGG + chr5_1:53603982-53604001 Msa0736930:CDS 25.0%
!! ATGATGTTTCTGATTTAACT+AGG + chr5_1:53604191-53604210 Msa0736930:CDS 25.0%
!! TATCTTTCTTCTTATCGTTT+TGG + chr5_1:53604316-53604335 Msa0736930:intron 25.0%
! GTTAGCATATAATTAGAATC+AGG - chr5_1:53604532-53604551 None:intergenic 25.0%
!!! AACAGAGACAACATTTTTTT+TGG - chr5_1:53604578-53604597 None:intergenic 25.0%
! CTGGAAAAGAATTCTTTAAT+CGG + chr5_1:53604665-53604684 Msa0736930:intron 25.0%
! GATTGTATAGTGGTTATTAA+AGG - chr5_1:53604696-53604715 None:intergenic 25.0%
! TTGAGTAATTGATTGTATAG+TGG - chr5_1:53604706-53604725 None:intergenic 25.0%
! AATTTAGCAATCATGATTAG+AGG + chr5_1:53604750-53604769 Msa0736930:intron 25.0%
! TGATTAGAGGAGTTATAATA+TGG + chr5_1:53604763-53604782 Msa0736930:intron 25.0%
! ATTTAACAGATTTACCTCTA+AGG - chr5_1:53605437-53605456 None:intergenic 25.0%
! AATTTCCGATACTATATTGT+TGG + chr5_1:53605475-53605494 Msa0736930:intron 25.0%
! ACTAACCAACAATATAGTAT+CGG - chr5_1:53605483-53605502 None:intergenic 25.0%
! TTGATACCATCTTAGAATAT+AGG - chr5_1:53605833-53605852 None:intergenic 25.0%
! ACAAAAATTAGACTCATTGA+TGG + chr5_1:53606170-53606189 Msa0736930:intron 25.0%
! ACAGATTAAAAGGATAAACA+AGG + chr5_1:53606195-53606214 Msa0736930:intron 25.0%
! CTCATTATAGAAATCTGTAT+GGG - chr5_1:53606362-53606381 None:intergenic 25.0%
! TCTCATTATAGAAATCTGTA+TGG - chr5_1:53606363-53606382 None:intergenic 25.0%
GGAAGTAAATGAAAATAGGT+AGG - chr5_1:53602947-53602966 None:intergenic 30.0%
AAACTTAACAGCATCAATAC+AGG - chr5_1:53603126-53603145 None:intergenic 30.0%
AGGAAGATGATTAACTTATG+GGG + chr5_1:53603268-53603287 Msa0736930:intron 30.0%
! AGATATTTCAAGTGCTATGA+AGG + chr5_1:53603834-53603853 Msa0736930:five_prime_UTR 30.0%
TACTTTCTTTGATCTTCTGA+TGG + chr5_1:53603871-53603890 Msa0736930:exon 30.0%
AACTGTATTCTGTTTATCCT+TGG - chr5_1:53603977-53603996 None:intergenic 30.0%
GATCAACCTTATTCAATGAT+TGG + chr5_1:53604053-53604072 Msa0736930:CDS 30.0%
!! CCTTATTCAATGATTGGTTT+CGG + chr5_1:53604059-53604078 Msa0736930:CDS 30.0%
!! ACGATCATTTTTCTCATCTT+CGG - chr5_1:53604428-53604447 None:intergenic 30.0%
! TATAATTAGAATCAGGTTGC+TGG - chr5_1:53604525-53604544 None:intergenic 30.0%
TATGCTAACAGTATTGTTTC+TGG + chr5_1:53604543-53604562 Msa0736930:intron 30.0%
!!! AGAGACAACATTTTTTTTGG+TGG - chr5_1:53604575-53604594 None:intergenic 30.0%
ATTGTTGGAGATATATGAAC+TGG + chr5_1:53604646-53604665 Msa0736930:intron 30.0%
CAATATTATATCCTCATGTG+TGG + chr5_1:53604900-53604919 Msa0736930:intron 30.0%
AACAATTATTTCCACACATG+AGG - chr5_1:53604914-53604933 None:intergenic 30.0%
ACAGAATTTCTCAAACTTGA+TGG + chr5_1:53605004-53605023 Msa0736930:CDS 30.0%
! AATGTAAGTTGACCATGTAA+GGG - chr5_1:53605149-53605168 None:intergenic 30.0%
! AAATGTAAGTTGACCATGTA+AGG - chr5_1:53605150-53605169 None:intergenic 30.0%
ATACAGTAGCAATACGATTA+AGG - chr5_1:53605250-53605269 None:intergenic 30.0%
! GTCTAATGTTTGAAGTGATA+TGG + chr5_1:53605732-53605751 Msa0736930:intron 30.0%
!! CTGAAAAGGTGTTTATAAGA+GGG + chr5_1:53605756-53605775 Msa0736930:intron 30.0%
AAAACCAATTTACAAGGTGA+GGG - chr5_1:53605788-53605807 None:intergenic 30.0%
AAAAACCAATTTACAAGGTG+AGG - chr5_1:53605789-53605808 None:intergenic 30.0%
CCTACAAAAACCAATTTACA+AGG - chr5_1:53605794-53605813 None:intergenic 30.0%
!!! CCTTGTAAATTGGTTTTTGT+AGG + chr5_1:53605791-53605810 Msa0736930:intron 30.0%
TGAATCATTTGGATGTGATA+TGG + chr5_1:53605945-53605964 Msa0736930:intron 30.0%
ATGACATTATCAGTGTAAAC+AGG - chr5_1:53606135-53606154 None:intergenic 30.0%
! ATTGATGGACACAGATTAAA+AGG + chr5_1:53606185-53606204 Msa0736930:intron 30.0%
!! AATGAGAGATAAGAAGTGTT+TGG + chr5_1:53606376-53606395 Msa0736930:intron 30.0%
!! AAAAGGAGTCTTGTATTTTC+TGG - chr5_1:53606425-53606444 None:intergenic 30.0%
! GACATAACTTTTAAACTGTC+AGG + chr5_1:53606445-53606464 Msa0736930:intron 30.0%
AGTATAAAATATCACCTCCA+AGG - chr5_1:53606531-53606550 None:intergenic 30.0%
! AAGAAAGTATGAGATACACC+TGG - chr5_1:53603860-53603879 None:intergenic 35.0%
GTTGCTCTATTAGTCAAGAT+AGG - chr5_1:53603926-53603945 None:intergenic 35.0%
CCGAAACCAATCATTGAATA+AGG - chr5_1:53604062-53604081 None:intergenic 35.0%
GTCTTGGAGATTAAACTAAC+TGG - chr5_1:53604103-53604122 None:intergenic 35.0%
TCTGTCTCATGTAAATCAAC+AGG + chr5_1:53604127-53604146 Msa0736930:CDS 35.0%
! ACTCGAGCTGACTTAAATAT+TGG + chr5_1:53604792-53604811 Msa0736930:intron 35.0%
ATTTCTTCAGTGGCATAATG+AGG + chr5_1:53604942-53604961 Msa0736930:intron 35.0%
GAGAAATTCTGTCCCTAAAA+AGG - chr5_1:53604996-53605015 None:intergenic 35.0%
! ATGTAAGTTGACCATGTAAG+GGG - chr5_1:53605148-53605167 None:intergenic 35.0%
!! TAGCTTTTTCTTTGACACCA+CGG - chr5_1:53605223-53605242 None:intergenic 35.0%
! CCTCTTATAAACACCTTTTC+AGG - chr5_1:53605758-53605777 None:intergenic 35.0%
!! CCTGAAAAGGTGTTTATAAG+AGG + chr5_1:53605755-53605774 Msa0736930:intron 35.0%
ATATCCCTCACCTTGTAAAT+TGG + chr5_1:53605781-53605800 Msa0736930:intron 35.0%
!! GGTTTTTGTAGGTTTGAGTT+AGG + chr5_1:53605802-53605821 Msa0736930:intron 35.0%
! GCTGAACCTATATTCTAAGA+TGG + chr5_1:53605824-53605843 Msa0736930:intron 35.0%
CACTGTAGTTGTCTAATACT+TGG + chr5_1:53605901-53605920 Msa0736930:intron 35.0%
ACATCCAAATGATTCACTGT+GGG - chr5_1:53605941-53605960 None:intergenic 35.0%
ACCTACAAAACAGGTTTGTA+GGG - chr5_1:53606007-53606026 None:intergenic 35.0%
AACCTACAAAACAGGTTTGT+AGG - chr5_1:53606008-53606027 None:intergenic 35.0%
ACGATATTAGAACTTGGGTT+TGG - chr5_1:53606040-53606059 None:intergenic 35.0%
GTGGTACGATATTAGAACTT+GGG - chr5_1:53606045-53606064 None:intergenic 35.0%
TGTGGTACGATATTAGAACT+TGG - chr5_1:53606046-53606065 None:intergenic 35.0%
! AAAGGATAAACAAGGTGTTC+TGG + chr5_1:53606203-53606222 Msa0736930:intron 35.0%
AGCAACTCTGTAATTAAGTG+TGG - chr5_1:53606304-53606323 None:intergenic 35.0%
CAAAAACATCCATGACATGA+TGG + chr5_1:53606650-53606669 Msa0736930:CDS 35.0%
TAACTATGCCTTTGTTCCAC+AGG + chr5_1:53602985-53603004 Msa0736930:five_prime_UTR 40.0%
AAAACTGACCTGTGGAACAA+AGG - chr5_1:53602996-53603015 None:intergenic 40.0%
GAAAGCTAAAAACTGACCTG+TGG - chr5_1:53603004-53603023 None:intergenic 40.0%
TAAATGGATAGACGCTAGAG+CGG + chr5_1:53603390-53603409 Msa0736930:intron 40.0%
! CTTTGGCTCATTCGTATGTT+GGG + chr5_1:53603462-53603481 Msa0736930:intron 40.0%
TCGTATGTTGGGTTACAACT+AGG + chr5_1:53603473-53603492 Msa0736930:intron 40.0%
TATGTTGGGTTACAACTAGG+AGG + chr5_1:53603476-53603495 Msa0736930:intron 40.0%
ATGTTGGGTTACAACTAGGA+GGG + chr5_1:53603477-53603496 Msa0736930:intron 40.0%
TGATCTTCTGATGGCACTTA+CGG + chr5_1:53603880-53603899 Msa0736930:exon 40.0%
ACGGCAAACAAAGTTTCAAG+CGG + chr5_1:53603899-53603918 Msa0736930:CDS 40.0%
GCAACACTTTGTAGATCACA+TGG + chr5_1:53603941-53603960 Msa0736930:CDS 40.0%
TCAAGGGTTAGACTCGAAAA+TGG + chr5_1:53603998-53604017 Msa0736930:CDS 40.0%
ACATGAGACAGAAGATGTCT+TGG - chr5_1:53604119-53604138 None:intergenic 40.0%
TGTCTCCTGTACATGTGAAA+GGG - chr5_1:53604403-53604422 None:intergenic 40.0%
ATGTCTCCTGTACATGTGAA+AGG - chr5_1:53604404-53604423 None:intergenic 40.0%
GAGAAACTTTGCATCGTTAC+AGG - chr5_1:53604491-53604510 None:intergenic 40.0%
ACGATGCAAAGTTTCTCTCA+CGG + chr5_1:53604494-53604513 Msa0736930:CDS 40.0%
ATATGGCAGATGAACAGTAG+TGG - chr5_1:53604612-53604631 None:intergenic 40.0%
! GCCAAGATGTTGCCTTTTTA+GGG + chr5_1:53604981-53605000 Msa0736930:CDS 40.0%
TCCCTAAAAAGGCAACATCT+TGG - chr5_1:53604985-53605004 None:intergenic 40.0%
TACACTACATTCCCCTTACA+TGG + chr5_1:53605134-53605153 Msa0736930:intron 40.0%
ATATCCACTGCAGATCTTGA+AGG + chr5_1:53605357-53605376 Msa0736930:intron 40.0%
ATATCCTTCAAGATCTGCAG+TGG - chr5_1:53605364-53605383 None:intergenic 40.0%
TGCAATGGAGGAGAAAAACT+AGG - chr5_1:53605644-53605663 None:intergenic 40.0%
TCCTCCATTGCAGATTAATG+TGG + chr5_1:53605652-53605671 Msa0736930:intron 40.0%
ACTGCCACATTAATCTGCAA+TGG - chr5_1:53605659-53605678 None:intergenic 40.0%
TGAAGTGATATGGCCTGAAA+AGG + chr5_1:53605742-53605761 Msa0736930:intron 40.0%
CACATCCAAATGATTCACTG+TGG - chr5_1:53605942-53605961 None:intergenic 40.0%
! ACCCTACAAACCTGTTTTGT+AGG + chr5_1:53606003-53606022 Msa0736930:intron 40.0%
CCAACTCAAACCTACAAAAC+AGG - chr5_1:53606016-53606035 None:intergenic 40.0%
! CCTGTTTTGTAGGTTTGAGT+TGG + chr5_1:53606013-53606032 Msa0736930:intron 40.0%
TATCACCTCCAAGGACATAA+GGG - chr5_1:53606522-53606541 None:intergenic 40.0%
ATATCACCTCCAAGGACATA+AGG - chr5_1:53606523-53606542 None:intergenic 40.0%
AAATGGATAGACGCTAGAGC+GGG + chr5_1:53603391-53603410 Msa0736930:intron 45.0%
TACGAATGAGCCAAAGCCAA+AGG - chr5_1:53603458-53603477 None:intergenic 45.0%
! GCTTTGGCTCATTCGTATGT+TGG + chr5_1:53603461-53603480 Msa0736930:intron 45.0%
! TGCTCTGCTGTCTAAGACAT+CGG + chr5_1:53603595-53603614 Msa0736930:intron 45.0%
! TTTCAAGTGCTATGAAGGCC+AGG + chr5_1:53603839-53603858 Msa0736930:five_prime_UTR 45.0%
CACATGGTTCTTCATCACCA+AGG + chr5_1:53603957-53603976 Msa0736930:CDS 45.0%
!! GATTGGTTTCGGTTCGTCAA+TGG + chr5_1:53604070-53604089 Msa0736930:CDS 45.0%
AGAGACCCTTTCACATGTAC+AGG + chr5_1:53604395-53604414 Msa0736930:intron 45.0%
CTTCAGTGGCATAATGAGGA+TGG + chr5_1:53604946-53604965 Msa0736930:intron 45.0%
! CGCCAAGATGTTGCCTTTTT+AGG + chr5_1:53604980-53604999 Msa0736930:CDS 45.0%
CTCTACTATGCTGCATAGCT+CGG + chr5_1:53605171-53605190 Msa0736930:intron 45.0%
TCTACTATGCTGCATAGCTC+GGG + chr5_1:53605172-53605191 Msa0736930:intron 45.0%
GATACTGAGAAAATCGACCG+TGG + chr5_1:53605203-53605222 Msa0736930:CDS 45.0%
! ATCGGCAGCACTTTTCAATC+TGG - chr5_1:53605395-53605414 None:intergenic 45.0%
GCCACATTAATCTGCAATGG+AGG - chr5_1:53605656-53605675 None:intergenic 45.0%
GAGTCCCACAGTGAATCATT+TGG + chr5_1:53605934-53605953 Msa0736930:intron 45.0%
! AGGTGTTCTGGTAATGAGCA+TGG + chr5_1:53606215-53606234 Msa0736930:intron 45.0%
! GGTGTTCTGGTAATGAGCAT+GGG + chr5_1:53606216-53606235 Msa0736930:intron 45.0%
! TTCTGGTAATGAGCATGGGT+TGG + chr5_1:53606220-53606239 Msa0736930:intron 45.0%
GTGTGGCATGACATCTTGTT+GGG + chr5_1:53606258-53606277 Msa0736930:intron 45.0%
TACTTCGCATGCGTTCACTT+AGG + chr5_1:53606547-53606566 Msa0736930:intron 45.0%
TCTTGCTCACCATCATGTCA+TGG - chr5_1:53606662-53606681 None:intergenic 45.0%
!!! TTGTTTTTATAAAAAAAAAA+AGG - chr5_1:53606575-53606594 None:intergenic 5.0%
AATGGATAGACGCTAGAGCG+GGG + chr5_1:53603392-53603411 Msa0736930:intron 50.0%
TGAGCCAAAGCCAAAGGAGT+AGG - chr5_1:53603452-53603471 None:intergenic 50.0%
TGGGTTACAACTAGGAGGGT+TGG + chr5_1:53603481-53603500 Msa0736930:intron 50.0%
GGGTTACAACTAGGAGGGTT+GGG + chr5_1:53603482-53603501 Msa0736930:intron 50.0%
GGTTACAACTAGGAGGGTTG+GGG + chr5_1:53603483-53603502 Msa0736930:intron 50.0%
! GTCTAAGACATCGGCACAGT+TGG + chr5_1:53603604-53603623 Msa0736930:intron 50.0%
GATCGTGTTCGTTCTGTTCG+TGG + chr5_1:53604442-53604461 Msa0736930:CDS 50.0%
! ATCCGCGAGCCACTCATTTT+CGG + chr5_1:53605865-53605884 Msa0736930:intron 50.0%
! CCACTCATTTTCGGACCACT+CGG + chr5_1:53605874-53605893 Msa0736930:intron 50.0%
! CACTCATTTTCGGACCACTC+GGG + chr5_1:53605875-53605894 Msa0736930:intron 50.0%
!! TGGGTTGGTGTTGTCACACA+TGG + chr5_1:53606235-53606254 Msa0736930:intron 50.0%
!! GGGTTGGTGTTGTCACACAT+GGG + chr5_1:53606236-53606255 Msa0736930:intron 50.0%
GGTGTGGCATGACATCTTGT+TGG + chr5_1:53606257-53606276 Msa0736930:intron 50.0%
ATCTTCCATGGCACGTTGCT+TGG - chr5_1:53606498-53606517 None:intergenic 50.0%
!! GGACATAAGGGCATCTTCCA+TGG - chr5_1:53606510-53606529 None:intergenic 50.0%
GGAAGATGCCCTTATGTCCT+TGG + chr5_1:53606511-53606530 Msa0736930:CDS 50.0%
AGATGCCCTTATGTCCTTGG+AGG + chr5_1:53606514-53606533 Msa0736930:CDS 50.0%
! AGCGCCTACTCCTTTGGCTT+TGG + chr5_1:53603445-53603464 Msa0736930:intron 55.0%
CTGCATAGCTCGGGCAAGAA+AGG + chr5_1:53605181-53605200 Msa0736930:intron 55.0%
!! AAAGTGCTGCCGATGAGCAC+TGG + chr5_1:53605401-53605420 Msa0736930:CDS 55.0%
GTCCGAAAATGAGTGGCTCG+CGG - chr5_1:53605870-53605889 None:intergenic 55.0%
CCGAGTGGTCCGAAAATGAG+TGG - chr5_1:53605877-53605896 None:intergenic 55.0%
CAACTACAGTGTGACCCGAG+TGG - chr5_1:53605892-53605911 None:intergenic 55.0%
! GGTGTTGTCACACATGGGTG+TGG + chr5_1:53606241-53606260 Msa0736930:intron 55.0%
ACGTTGCTTGGCACGGAAGT+CGG - chr5_1:53606486-53606505 None:intergenic 55.0%
AAGGAGTAGGCGCTCTCGCA+CGG - chr5_1:53603439-53603458 None:intergenic 60.0%
!! TGCGAGAGCGCCTACTCCTT+TGG + chr5_1:53603439-53603458 Msa0736930:intron 60.0%
!! GCCGATGAGCACTGGAGTGA+CGG + chr5_1:53605409-53605428 Msa0736930:CDS 60.0%
CCCGTCACTCCAGTGCTCAT+CGG - chr5_1:53605413-53605432 None:intergenic 60.0%
!! CCGATGAGCACTGGAGTGAC+GGG + chr5_1:53605410-53605429 Msa0736930:CDS 60.0%
!! CGATGAGCACTGGAGTGACG+GGG + chr5_1:53605411-53605430 Msa0736930:CDS 60.0%
CCATGGCACGTTGCTTGGCA+CGG - chr5_1:53606493-53606512 None:intergenic 60.0%
! CTGGAGTGACGGGGCCTTAG+AGG + chr5_1:53605420-53605439 Msa0736930:CDS 65.0%
GCTTGGCACGGAAGTCGGCA+AGG - chr5_1:53606481-53606500 None:intergenic 65.0%
CCGTGCCAAGCAACGTGCCA+TGG + chr5_1:53606490-53606509 Msa0736930:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 53602906 53606695 53602906 ID=Msa0736930;Name=Msa0736930
chr5_1 mRNA 53602906 53606695 53602906 ID=Msa0736930-mRNA-1;Parent=Msa0736930;Name=Msa0736930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=162|1|0.87|1|0.71|0.62|8|0|254
chr5_1 exon 53602906 53603006 53602906 ID=Msa0736930-mRNA-1:exon:15100;Parent=Msa0736930-mRNA-1
chr5_1 exon 53603829 53604212 53603829 ID=Msa0736930-mRNA-1:exon:15101;Parent=Msa0736930-mRNA-1
chr5_1 exon 53604417 53604515 53604417 ID=Msa0736930-mRNA-1:exon:15102;Parent=Msa0736930-mRNA-1
chr5_1 exon 53604952 53605025 53604952 ID=Msa0736930-mRNA-1:exon:15103;Parent=Msa0736930-mRNA-1
chr5_1 exon 53605189 53605265 53605189 ID=Msa0736930-mRNA-1:exon:15104;Parent=Msa0736930-mRNA-1
chr5_1 exon 53605370 53605441 53605370 ID=Msa0736930-mRNA-1:exon:15105;Parent=Msa0736930-mRNA-1
chr5_1 exon 53606467 53606535 53606467 ID=Msa0736930-mRNA-1:exon:15106;Parent=Msa0736930-mRNA-1
chr5_1 exon 53606645 53606695 53606645 ID=Msa0736930-mRNA-1:exon:15107;Parent=Msa0736930-mRNA-1
chr5_1 five_prime_UTR 53602906 53603006 53602906 ID=Msa0736930-mRNA-1:five_prime_utr;Parent=Msa0736930-mRNA-1
chr5_1 five_prime_UTR 53603829 53603889 53603829 ID=Msa0736930-mRNA-1:five_prime_utr;Parent=Msa0736930-mRNA-1
chr5_1 CDS 53603890 53604212 53603890 ID=Msa0736930-mRNA-1:cds;Parent=Msa0736930-mRNA-1
chr5_1 CDS 53604417 53604515 53604417 ID=Msa0736930-mRNA-1:cds;Parent=Msa0736930-mRNA-1
chr5_1 CDS 53604952 53605025 53604952 ID=Msa0736930-mRNA-1:cds;Parent=Msa0736930-mRNA-1
chr5_1 CDS 53605189 53605265 53605189 ID=Msa0736930-mRNA-1:cds;Parent=Msa0736930-mRNA-1
chr5_1 CDS 53605370 53605441 53605370 ID=Msa0736930-mRNA-1:cds;Parent=Msa0736930-mRNA-1
chr5_1 CDS 53606467 53606535 53606467 ID=Msa0736930-mRNA-1:cds;Parent=Msa0736930-mRNA-1
chr5_1 CDS 53606645 53606695 53606645 ID=Msa0736930-mRNA-1:cds;Parent=Msa0736930-mRNA-1
Gene Sequence

>Msa0736930

ATGGCACTTACGGCAAACAAAGTTTCAAGCGGTCCTATCTTGACTAATAGAGCAACACTTTGTAGATCACATGGTTCTTCATCACCAAGGATAAACAGAATACAGTTTTCAAGGGTTAGACTCGAAAATGGACATTTGAACAACGATTCTGTTCTCAATGAGAGATCAACCTTATTCAATGATTGGTTTCGGTTCGTCAATGGAAGAAATCCAGTTAGTTTAATCTCCAAGACATCTTCTGTCTCATGTAAATCAACAGGAGCAAATAATACTGAAGAAAAAGAATGTGTTACAACTTATGATGATGTTTCTGATTTAACTAGGAGACATGCCGAAGATGAGAAAAATGATCGTGTTCGTTCTGTTCGTGGCTTGTCTGAAGCTTATAGATTTGCCTGTAACGATGCAAAGTTTCTCTCACGTGGCATAATGAGGATGGATGAGCATGCGCGCCAAGATGTTGCCTTTTTAGGGACAGAATTTCTCAAACTTGATGCTCGGGCAAGAAAGGATACTGAGAAAATCGACCGTGGTGTCAAAGAAAAAGCTAAGCGCCTTAATCGTATTGCTACTATCTTGAAGGATATCGCTCAGACCAGATTGAAAAGTGCTGCCGATGAGCACTGGAGTGACGGGGCCTTAGAGGCTGATTTGCGCCTTGCCGACTTCCGTGCCAAGCAACGTGCCATGGAAGATGCCCTTATGTCCTTGGAGCTGATCAAAAACATCCATGACATGATGGTGAGCAAGACTTATAACTTGTAA

Protein sequence

>Msa0736930

MALTANKVSSGPILTNRATLCRSHGSSSPRINRIQFSRVRLENGHLNNDSVLNERSTLFNDWFRFVNGRNPVSLISKTSSVSCKSTGANNTEEKECVTTYDDVSDLTRRHAEDEKNDRVRSVRGLSEAYRFACNDAKFLSRGIMRMDEHARQDVAFLGTEFLKLDARARKDTEKIDRGVKEKAKRLNRIATILKDIAQTRLKSAADEHWSDGALEADLRLADFRAKQRAMEDALMSLELIKNIHDMMVSKTYNL*