Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049380 | XP_003621331.1 | 94.005 | 367 | 21 | 1 | 1 | 366 | 1 | 367 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049380 | sp|P93324|CHOMT_MEDSA | 61.022 | 372 | 136 | 3 | 2 | 366 | 3 | 372 | 7.70e-168 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049380 | G7L359 | 94.005 | 367 | 21 | 1 | 1 | 366 | 1 | 367 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011010 | Msa1049380 | 0.802542 | 5.339379e-49 | -8.615850e-47 |
| Msa0025560 | Msa1049380 | 0.822420 | 2.391513e-53 | -8.615850e-47 |
| Msa0048380 | Msa1049380 | 0.801852 | 7.403402e-49 | -8.615850e-47 |
| Msa0098380 | Msa1049380 | 0.807148 | 5.822128e-50 | -8.615850e-47 |
| Msa0117650 | Msa1049380 | 0.801309 | 9.567601e-49 | -8.615850e-47 |
| Msa0628200 | Msa1049380 | 0.818675 | 1.731954e-52 | -8.615850e-47 |
| Msa0637590 | Msa1049380 | 0.829026 | 6.480223e-55 | -8.615850e-47 |
| Msa0637700 | Msa1049380 | 0.823797 | 1.141627e-53 | -8.615850e-47 |
| Msa0643230 | Msa1049380 | 0.815895 | 7.313063e-52 | -8.615850e-47 |
| Msa0652590 | Msa1049380 | 0.832798 | 7.695965e-56 | -8.615850e-47 |
| Msa0655370 | Msa1049380 | 0.803353 | 3.630972e-49 | -8.615850e-47 |
| Msa0682110 | Msa1049380 | 0.845831 | 3.177741e-59 | -8.615850e-47 |
| Msa0682160 | Msa1049380 | 0.844573 | 6.955281e-59 | -8.615850e-47 |
| Msa0682910 | Msa1049380 | 0.805371 | 1.379022e-49 | -8.615850e-47 |
| Msa0699170 | Msa1049380 | 0.806596 | 7.616371e-50 | -8.615850e-47 |
| Msa0725580 | Msa1049380 | 0.809362 | 1.964429e-50 | -8.615850e-47 |
| Msa0729790 | Msa1049380 | 0.802146 | 6.444402e-49 | -8.615850e-47 |
| Msa0743370 | Msa1049380 | 0.802831 | 4.655516e-49 | -8.615850e-47 |
| Msa0744710 | Msa1049380 | 0.821494 | 3.919214e-53 | -8.615850e-47 |
| Msa0750790 | Msa1049380 | 0.812273 | 4.606378e-51 | -8.615850e-47 |
| Msa0750830 | Msa1049380 | 0.828128 | 1.067815e-54 | -8.615850e-47 |
| Msa0794200 | Msa1049380 | 0.803440 | 3.482138e-49 | -8.615850e-47 |
| Msa0812720 | Msa1049380 | 0.813569 | 2.394789e-51 | -8.615850e-47 |
| Msa0826240 | Msa1049380 | 0.817676 | 2.914994e-52 | -8.615850e-47 |
| Msa0829990 | Msa1049380 | 0.830378 | 3.038372e-55 | -8.615850e-47 |
| Msa0121300 | Msa1049380 | 0.849010 | 4.254959e-60 | -8.615850e-47 |
| Msa0151660 | Msa1049380 | 0.811735 | 6.034195e-51 | -8.615850e-47 |
| Msa0166190 | Msa1049380 | 0.823337 | 1.462254e-53 | -8.615850e-47 |
| Msa0185040 | Msa1049380 | 0.812062 | 5.122339e-51 | -8.615850e-47 |
| Msa0193950 | Msa1049380 | 0.807625 | 4.612341e-50 | -8.615850e-47 |
| Msa0224870 | Msa1049380 | 0.803123 | 4.051049e-49 | -8.615850e-47 |
| Msa0400010 | Msa1049380 | 0.809829 | 1.559648e-50 | -8.615850e-47 |
| Msa0405200 | Msa1049380 | 0.800827 | 1.200361e-48 | -8.615850e-47 |
| Msa0415640 | Msa1049380 | 0.814987 | 1.164394e-51 | -8.615850e-47 |
| Msa0449490 | Msa1049380 | 0.811153 | 8.073747e-51 | -8.615850e-47 |
| Msa0459930 | Msa1049380 | 0.803696 | 3.082559e-49 | -8.615850e-47 |
| Msa0460600 | Msa1049380 | 0.809700 | 1.661892e-50 | -8.615850e-47 |
| Msa1007900 | Msa1049380 | 0.947955 | 2.450256e-106 | -8.615850e-47 |
| Msa1035050 | Msa1049380 | 0.824389 | 8.290751e-54 | -8.615850e-47 |
| Msa1049380 | Msa1062060 | 0.820852 | 5.510064e-53 | -8.615850e-47 |
| Msa1049380 | Msa1062290 | 0.831542 | 1.573260e-55 | -8.615850e-47 |
| Msa1049380 | Msa1071350 | 0.804912 | 1.719991e-49 | -8.615850e-47 |
| Msa1049380 | Msa1075090 | 0.817808 | 2.721101e-52 | -8.615850e-47 |
| Msa1049380 | Msa1085820 | 0.807993 | 3.853160e-50 | -8.615850e-47 |
| Msa1049380 | Msa1099650 | 0.820429 | 6.890423e-53 | -8.615850e-47 |
| Msa1049380 | Msa1103450 | 0.801978 | 6.975411e-49 | -8.615850e-47 |
| Msa1049380 | Msa1107220 | 0.840972 | 6.300351e-58 | -8.615850e-47 |
| Msa1049380 | Msa1110900 | 0.806906 | 6.550805e-50 | -8.615850e-47 |
| Msa1049380 | Msa1115980 | 0.807859 | 4.114609e-50 | -8.615850e-47 |
| Msa1049380 | Msa1136630 | 0.861931 | 7.249485e-64 | -8.615850e-47 |
| Msa1049380 | Msa1136690 | 0.937396 | 3.706980e-98 | -8.615850e-47 |
| Msa1049380 | Msa1136760 | 0.837181 | 6.048679e-57 | -8.615850e-47 |
| Msa1049380 | Msa1143260 | 0.818287 | 2.121225e-52 | -8.615850e-47 |
| Msa1049380 | Msa1150760 | 0.821626 | 3.654100e-53 | -8.615850e-47 |
| Msa1049380 | Msa1186150 | 0.800861 | 1.181702e-48 | -8.615850e-47 |
| Msa1049380 | Msa1187480 | 0.807921 | 3.991013e-50 | -8.615850e-47 |
| Msa1049380 | Msa1191270 | 0.819924 | 8.993302e-53 | -8.615850e-47 |
| Msa1049380 | Msa1202110 | 0.835422 | 1.693974e-56 | -8.615850e-47 |
| Msa1049380 | Msa1202800 | 0.808344 | 3.243652e-50 | -8.615850e-47 |
| Msa1049380 | Msa1215740 | 0.804972 | 1.670875e-49 | -8.615850e-47 |
| Msa1049380 | Msa1223710 | 0.811859 | 5.670310e-51 | -8.615850e-47 |
| Msa1049380 | Msa1223990 | 0.804483 | 2.114223e-49 | -8.615850e-47 |
| Msa1049380 | Msa1254870 | 0.836557 | 8.725743e-57 | -8.615850e-47 |
| Msa1049380 | Msa1263110 | 0.800182 | 1.625184e-48 | -8.615850e-47 |
| Msa1049380 | Msa1273320 | 0.800789 | 1.222233e-48 | -8.615850e-47 |
| Msa1049380 | Msa1292660 | 0.813373 | 2.644672e-51 | -8.615850e-47 |
| Msa1049380 | Msa1328430 | 0.836802 | 7.556344e-57 | -8.615850e-47 |
| Msa1049380 | Msa1344450 | 0.812540 | 4.028205e-51 | -8.615850e-47 |
| Msa1049380 | Msa1362850 | 0.800013 | 1.758893e-48 | -8.615850e-47 |
| Msa1049380 | Msa1364690 | 0.815207 | 1.040749e-51 | -8.615850e-47 |
| Msa1049380 | Msa1372810 | 0.810602 | 1.062372e-50 | -8.615850e-47 |
| Msa1049380 | Msa1398140 | 0.846268 | 2.415978e-59 | -8.615850e-47 |
| Msa1049380 | Msa1407810 | 0.821235 | 4.497952e-53 | -8.615850e-47 |
| Msa1049380 | Msa1433360 | 0.817104 | 3.920010e-52 | -8.615850e-47 |
| Msa1049380 | Msa1437590 | 0.816685 | 4.867343e-52 | -8.615850e-47 |
| Msa1049380 | Msa1437780 | 0.823569 | 1.290503e-53 | -8.615850e-47 |
| Msa1049380 | Msa1455200 | 0.821438 | 4.038062e-53 | -8.615850e-47 |
| Msa0273400 | Msa1049380 | 0.800023 | 1.750651e-48 | -8.615850e-47 |
| Msa0275730 | Msa1049380 | 0.803024 | 4.246075e-49 | -8.615850e-47 |
| Msa0282830 | Msa1049380 | 0.802569 | 5.271614e-49 | -8.615850e-47 |
| Msa0297030 | Msa1049380 | 0.806075 | 9.810805e-50 | -8.615850e-47 |
| Msa0321240 | Msa1049380 | 0.802091 | 6.613817e-49 | -8.615850e-47 |
| Msa0345050 | Msa1049380 | 0.840215 | 9.941137e-58 | -8.615850e-47 |
| Msa0345890 | Msa1049380 | 0.802906 | 4.490937e-49 | -8.615850e-47 |
| Msa0353010 | Msa1049380 | 0.802830 | 4.656292e-49 | -8.615850e-47 |
| Msa0357550 | Msa1049380 | 0.809035 | 2.308129e-50 | -8.615850e-47 |
| Msa0357560 | Msa1049380 | 0.804226 | 2.391143e-49 | -8.615850e-47 |
| Msa0524710 | Msa1049380 | 0.816245 | 6.108419e-52 | -8.615850e-47 |
| Msa0531050 | Msa1049380 | 0.831506 | 1.606576e-55 | -8.615850e-47 |
| Msa0547370 | Msa1049380 | 0.802357 | 5.830891e-49 | -8.615850e-47 |
| Msa0556270 | Msa1049380 | 0.823126 | 1.638120e-53 | -8.615850e-47 |
| Msa0557240 | Msa1049380 | 0.817416 | 3.335171e-52 | -8.615850e-47 |
| Msa0561830 | Msa1049380 | 0.814672 | 1.367603e-51 | -8.615850e-47 |
| Msa0567330 | Msa1049380 | 0.810050 | 1.397453e-50 | -8.615850e-47 |
| Msa0567570 | Msa1049380 | 0.812834 | 3.473461e-51 | -8.615850e-47 |
| Msa0576320 | Msa1049380 | 0.801134 | 1.038943e-48 | -8.615850e-47 |
| Msa0597800 | Msa1049380 | 0.822635 | 2.131778e-53 | -8.615850e-47 |
| Msa0597820 | Msa1049380 | 0.818564 | 1.835528e-52 | -8.615850e-47 |
| Msa0873910 | Msa1049380 | 0.810505 | 1.114701e-50 | -8.615850e-47 |
| Msa0906660 | Msa1049380 | 0.815776 | 7.773889e-52 | -8.615850e-47 |
| Msa0910560 | Msa1049380 | 0.808106 | 3.645894e-50 | -8.615850e-47 |
| Msa0925940 | Msa1049380 | 0.821762 | 3.398456e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049380 | MtrunA17_Chr7g0218181 | 94.005 | 367 | 21 | 1 | 1 | 366 | 1 | 367 | 0.0 | 716 |
| Msa1049380 | MtrunA17_Chr7g0218131 | 78.763 | 372 | 71 | 4 | 1 | 366 | 1 | 370 | 0.0 | 606 |
| Msa1049380 | MtrunA17_Chr7g0218211 | 73.713 | 369 | 91 | 3 | 3 | 366 | 2 | 369 | 0.0 | 571 |
| Msa1049380 | MtrunA17_Chr7g0218261 | 74.526 | 369 | 87 | 3 | 3 | 366 | 2 | 368 | 0.0 | 566 |
| Msa1049380 | MtrunA17_Chr7g0218301 | 69.681 | 376 | 103 | 4 | 1 | 366 | 1 | 375 | 0.0 | 530 |
| Msa1049380 | MtrunA17_Chr7g0218271 | 68.617 | 376 | 107 | 4 | 1 | 366 | 1 | 375 | 0.0 | 528 |
| Msa1049380 | MtrunA17_Chr2g0307521 | 66.846 | 371 | 110 | 4 | 1 | 366 | 1 | 363 | 0.0 | 511 |
| Msa1049380 | MtrunA17_Chr1g0200491 | 61.022 | 372 | 136 | 3 | 2 | 366 | 3 | 372 | 1.78e-169 | 477 |
| Msa1049380 | MtrunA17_Chr1g0163601 | 50.404 | 371 | 172 | 5 | 5 | 366 | 3 | 370 | 5.55e-132 | 382 |
| Msa1049380 | MtrunA17_Chr1g0163611 | 49.057 | 371 | 177 | 5 | 5 | 366 | 3 | 370 | 4.96e-130 | 377 |
| Msa1049380 | MtrunA17_Chr3g0085201 | 53.977 | 352 | 154 | 5 | 20 | 366 | 9 | 357 | 1.47e-124 | 362 |
| Msa1049380 | MtrunA17_Chr1g0163621 | 49.865 | 371 | 173 | 6 | 5 | 366 | 18 | 384 | 4.07e-123 | 360 |
| Msa1049380 | MtrunA17_Chr3g0085211 | 53.258 | 353 | 155 | 6 | 20 | 366 | 22 | 370 | 2.14e-122 | 357 |
| Msa1049380 | MtrunA17_Chr3g0128011 | 47.159 | 352 | 177 | 6 | 20 | 366 | 70 | 417 | 1.37e-106 | 319 |
| Msa1049380 | MtrunA17_Chr5g0448091 | 42.179 | 358 | 192 | 8 | 18 | 366 | 12 | 363 | 4.50e-93 | 283 |
| Msa1049380 | MtrunA17_Chr7g0276401 | 41.576 | 368 | 204 | 8 | 5 | 366 | 13 | 375 | 5.12e-92 | 280 |
| Msa1049380 | MtrunA17_Chr8g0367441 | 40.157 | 381 | 209 | 10 | 1 | 366 | 1 | 377 | 1.98e-90 | 276 |
| Msa1049380 | MtrunA17_Chr7g0276411 | 41.047 | 363 | 202 | 7 | 12 | 366 | 4 | 362 | 5.49e-87 | 267 |
| Msa1049380 | MtrunA17_Chr8g0367451 | 39.227 | 362 | 208 | 8 | 13 | 366 | 19 | 376 | 4.11e-84 | 260 |
| Msa1049380 | MtrunA17_Chr8g0367491 | 39.828 | 349 | 199 | 7 | 25 | 366 | 32 | 376 | 1.37e-82 | 256 |
| Msa1049380 | MtrunA17_Chr8g0367501 | 39.296 | 341 | 196 | 6 | 34 | 366 | 28 | 365 | 9.07e-79 | 248 |
| Msa1049380 | MtrunA17_Chr8g0367381 | 41.049 | 324 | 161 | 9 | 18 | 333 | 25 | 326 | 3.32e-74 | 233 |
| Msa1049380 | MtrunA17_Chr8g0345851 | 42.807 | 285 | 150 | 6 | 88 | 366 | 13 | 290 | 5.51e-71 | 223 |
| Msa1049380 | MtrunA17_Chr2g0314271 | 37.101 | 345 | 198 | 10 | 12 | 347 | 2 | 336 | 2.55e-65 | 211 |
| Msa1049380 | MtrunA17_Chr3g0130011 | 35.593 | 354 | 204 | 9 | 25 | 366 | 17 | 358 | 8.12e-59 | 194 |
| Msa1049380 | MtrunA17_Chr3g0130061 | 35.503 | 338 | 197 | 8 | 25 | 351 | 17 | 344 | 4.06e-58 | 192 |
| Msa1049380 | MtrunA17_Chr6g0482291 | 44.865 | 185 | 92 | 3 | 183 | 366 | 1 | 176 | 4.65e-50 | 166 |
| Msa1049380 | MtrunA17_Chr3g0121301 | 33.125 | 320 | 198 | 9 | 38 | 351 | 38 | 347 | 2.67e-49 | 169 |
| Msa1049380 | MtrunA17_Chr4g0022021 | 33.851 | 322 | 194 | 11 | 40 | 352 | 44 | 355 | 3.38e-48 | 167 |
| Msa1049380 | MtrunA17_Chr1g0188371 | 30.226 | 354 | 215 | 11 | 19 | 350 | 2 | 345 | 3.30e-46 | 162 |
| Msa1049380 | MtrunA17_Chr4g0021981 | 33.231 | 325 | 192 | 12 | 40 | 352 | 44 | 355 | 1.74e-45 | 159 |
| Msa1049380 | MtrunA17_Chr1g0188391 | 30.000 | 320 | 211 | 6 | 40 | 351 | 33 | 347 | 1.85e-43 | 154 |
| Msa1049380 | MtrunA17_Chr5g0432251 | 28.713 | 303 | 201 | 8 | 70 | 365 | 64 | 358 | 7.42e-43 | 152 |
| Msa1049380 | MtrunA17_Chr4g0014561 | 31.778 | 343 | 206 | 10 | 39 | 365 | 32 | 362 | 2.68e-41 | 148 |
| Msa1049380 | MtrunA17_Chr4g0014681 | 31.487 | 343 | 207 | 10 | 39 | 365 | 32 | 362 | 2.04e-40 | 146 |
| Msa1049380 | MtrunA17_Chr7g0219161 | 27.645 | 293 | 201 | 5 | 65 | 354 | 62 | 346 | 5.27e-39 | 142 |
| Msa1049380 | MtrunA17_Chr5g0432301 | 28.296 | 311 | 209 | 8 | 61 | 365 | 57 | 359 | 4.19e-38 | 140 |
| Msa1049380 | MtrunA17_Chr5g0432241 | 28.710 | 310 | 209 | 7 | 61 | 365 | 57 | 359 | 6.76e-38 | 139 |
| Msa1049380 | MtrunA17_Chr4g0014641 | 30.029 | 343 | 212 | 10 | 39 | 365 | 32 | 362 | 9.90e-38 | 139 |
| Msa1049380 | MtrunA17_Chr4g0046361 | 29.179 | 329 | 218 | 8 | 33 | 352 | 26 | 348 | 7.44e-37 | 136 |
| Msa1049380 | MtrunA17_Chr7g0223241 | 34.826 | 201 | 118 | 4 | 166 | 360 | 148 | 341 | 3.46e-36 | 134 |
| Msa1049380 | MtrunA17_Chr7g0219141 | 25.595 | 336 | 228 | 7 | 40 | 365 | 33 | 356 | 1.12e-35 | 133 |
| Msa1049380 | MtrunA17_Chr7g0223231 | 28.938 | 273 | 174 | 8 | 80 | 346 | 73 | 331 | 1.66e-35 | 132 |
| Msa1049380 | MtrunA17_Chr4g0040621 | 35.714 | 196 | 122 | 2 | 161 | 352 | 161 | 356 | 1.72e-35 | 133 |
| Msa1049380 | MtrunA17_Chr4g0046531 | 27.329 | 322 | 218 | 7 | 37 | 351 | 30 | 342 | 3.63e-35 | 136 |
| Msa1049380 | MtrunA17_Chr4g0046531 | 26.113 | 337 | 230 | 6 | 37 | 365 | 392 | 717 | 4.07e-35 | 136 |
| Msa1049380 | MtrunA17_Chr8g0367401 | 50.909 | 110 | 54 | 0 | 160 | 269 | 2 | 111 | 2.22e-34 | 124 |
| Msa1049380 | MtrunA17_Chr5g0432211 | 31.489 | 235 | 155 | 3 | 136 | 365 | 111 | 344 | 4.02e-34 | 129 |
| Msa1049380 | MtrunA17_Chr4g0046341 | 29.226 | 349 | 220 | 9 | 33 | 365 | 26 | 363 | 5.58e-33 | 126 |
| Msa1049380 | MtrunA17_Chr6g0476581 | 70.000 | 90 | 22 | 3 | 1 | 85 | 1 | 90 | 9.59e-32 | 115 |
| Msa1049380 | MtrunA17_Chr1g0170941 | 69.737 | 76 | 23 | 0 | 191 | 266 | 1 | 76 | 3.24e-31 | 113 |
| Msa1049380 | MtrunA17_Chr5g0432261 | 33.929 | 168 | 107 | 2 | 201 | 365 | 160 | 326 | 1.72e-29 | 115 |
| Msa1049380 | MtrunA17_Chr4g0014661 | 28.274 | 336 | 221 | 9 | 39 | 365 | 32 | 356 | 3.15e-28 | 113 |
| Msa1049380 | MtrunA17_Chr4g0014591 | 28.319 | 339 | 217 | 11 | 39 | 365 | 32 | 356 | 5.79e-26 | 107 |
| Msa1049380 | MtrunA17_Chr1g0170931 | 46.552 | 116 | 53 | 2 | 25 | 133 | 6 | 119 | 2.39e-25 | 99.4 |
| Msa1049380 | MtrunA17_Chr8g0367461 | 45.217 | 115 | 57 | 3 | 255 | 366 | 1 | 112 | 3.84e-25 | 98.2 |
| Msa1049380 | MtrunA17_Chr8g0367421 | 41.818 | 110 | 47 | 1 | 160 | 269 | 2 | 94 | 2.99e-23 | 93.6 |
| Msa1049380 | MtrunA17_Chr8g0367391 | 42.991 | 107 | 59 | 2 | 261 | 366 | 29 | 134 | 1.74e-21 | 89.4 |
| Msa1049380 | MtrunA17_Chr4g0014601 | 29.046 | 241 | 150 | 9 | 39 | 271 | 32 | 259 | 4.60e-20 | 88.6 |
| Msa1049380 | MtrunA17_Chr7g0219171 | 33.582 | 134 | 82 | 4 | 236 | 365 | 117 | 247 | 7.79e-19 | 85.1 |
| Msa1049380 | MtrunA17_Chr8g0367471 | 47.297 | 74 | 39 | 0 | 183 | 256 | 1 | 74 | 7.52e-16 | 72.4 |
| Msa1049380 | MtrunA17_Chr1g0170951 | 44.286 | 70 | 39 | 0 | 277 | 346 | 17 | 86 | 1.34e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049380 | AT5G54160.1 | 48.538 | 342 | 170 | 4 | 20 | 358 | 16 | 354 | 3.50e-110 | 327 |
| Msa1049380 | AT1G77520.1 | 39.437 | 355 | 200 | 8 | 24 | 366 | 30 | 381 | 4.24e-82 | 255 |
| Msa1049380 | AT1G51990.2 | 37.119 | 361 | 217 | 5 | 12 | 365 | 4 | 361 | 8.96e-81 | 251 |
| Msa1049380 | AT1G51990.1 | 36.842 | 361 | 218 | 5 | 12 | 365 | 4 | 361 | 1.22e-79 | 248 |
| Msa1049380 | AT1G33030.1 | 38.244 | 353 | 207 | 8 | 20 | 366 | 3 | 350 | 2.01e-78 | 245 |
| Msa1049380 | AT1G63140.2 | 39.612 | 361 | 199 | 10 | 20 | 366 | 26 | 381 | 2.65e-73 | 233 |
| Msa1049380 | AT1G63140.4 | 39.612 | 361 | 199 | 10 | 20 | 366 | 46 | 401 | 3.89e-73 | 233 |
| Msa1049380 | AT1G21100.1 | 41.311 | 351 | 185 | 10 | 20 | 356 | 21 | 364 | 1.20e-72 | 231 |
| Msa1049380 | AT1G21130.1 | 40.669 | 359 | 190 | 11 | 14 | 356 | 13 | 364 | 1.79e-71 | 228 |
| Msa1049380 | AT5G53810.1 | 39.474 | 342 | 193 | 7 | 37 | 366 | 39 | 378 | 1.60e-70 | 225 |
| Msa1049380 | AT1G77530.1 | 38.873 | 355 | 202 | 9 | 24 | 366 | 30 | 381 | 1.87e-70 | 225 |
| Msa1049380 | AT1G21110.1 | 41.026 | 351 | 186 | 10 | 20 | 356 | 21 | 364 | 6.19e-70 | 224 |
| Msa1049380 | AT1G21120.1 | 40.456 | 351 | 188 | 10 | 20 | 356 | 21 | 364 | 9.25e-69 | 221 |
| Msa1049380 | AT1G21120.2 | 40.456 | 351 | 188 | 10 | 20 | 356 | 69 | 412 | 4.04e-68 | 220 |
| Msa1049380 | AT1G76790.1 | 37.772 | 368 | 203 | 10 | 17 | 366 | 6 | 365 | 6.24e-66 | 213 |
| Msa1049380 | AT3G53140.1 | 34.758 | 351 | 202 | 9 | 12 | 346 | 1 | 340 | 1.56e-60 | 199 |
| Msa1049380 | AT1G62900.1 | 45.813 | 203 | 107 | 3 | 166 | 366 | 4 | 205 | 2.54e-57 | 186 |
| Msa1049380 | AT5G37170.1 | 35.404 | 322 | 161 | 10 | 56 | 366 | 49 | 334 | 2.41e-53 | 179 |
| Msa1049380 | AT5G37170.2 | 43.500 | 200 | 105 | 5 | 172 | 366 | 38 | 234 | 4.91e-51 | 170 |
| Msa1049380 | AT1G33030.3 | 36.576 | 257 | 154 | 6 | 20 | 271 | 3 | 255 | 2.08e-49 | 167 |
| Msa1049380 | AT1G33030.2 | 36.614 | 254 | 152 | 6 | 20 | 268 | 3 | 252 | 3.13e-48 | 164 |
| Msa1049380 | AT5G37170.3 | 43.386 | 189 | 99 | 5 | 183 | 366 | 1 | 186 | 8.53e-48 | 160 |
| Msa1049380 | AT1G21130.2 | 40.075 | 267 | 143 | 8 | 14 | 268 | 13 | 274 | 1.35e-42 | 150 |
| Msa1049380 | AT1G63140.1 | 38.697 | 261 | 144 | 7 | 20 | 268 | 46 | 302 | 3.78e-42 | 149 |
| Msa1049380 | AT4G35150.1 | 34.951 | 206 | 124 | 3 | 156 | 351 | 105 | 310 | 1.02e-38 | 141 |
| Msa1049380 | AT4G35160.1 | 31.118 | 331 | 204 | 10 | 38 | 351 | 44 | 367 | 1.16e-36 | 137 |
| Msa1049380 | AT1G77530.2 | 37.179 | 234 | 135 | 6 | 24 | 247 | 30 | 261 | 4.41e-33 | 124 |
| Msa1049380 | AT1G63140.3 | 37.021 | 235 | 132 | 7 | 20 | 242 | 46 | 276 | 2.26e-31 | 120 |
Find 71 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAAGAATATGAAATTT+TGG | 0.154985 | 7_2:+12596143 | Msa1049380:CDS |
| TGGAAAATATCCATCAATTA+AGG | 0.161284 | 7_2:+12594663 | Msa1049380:CDS |
| TCATTGATTTGTTGAATATT+TGG | 0.166485 | 7_2:-12594525 | None:intergenic |
| TGTTGTGCTTTCTCCATTAT+TGG | 0.201075 | 7_2:+12596201 | Msa1049380:CDS |
| GACCTATTCAAGAAAGTTAA+TGG | 0.210657 | 7_2:+12594460 | Msa1049380:CDS |
| TACAAAGCTTTGCCTCAAAA+TGG | 0.249404 | 7_2:+12596003 | Msa1049380:CDS |
| CTGGATGCATTTGTTGGTTC+TGG | 0.263376 | 7_2:-12596063 | None:intergenic |
| CAAACTCTCAAAATGATTAT+TGG | 0.266494 | 7_2:+12594643 | Msa1049380:CDS |
| CTCAACTTGTTTGAAATCAT+TGG | 0.292345 | 7_2:+12592672 | Msa1049380:CDS |
| GTATCAACTTTGGTTGATAT+TGG | 0.295454 | 7_2:+12594607 | Msa1049380:CDS |
| ATGTGTCACCCTGCTTTGAT+AGG | 0.308455 | 7_2:+12592933 | Msa1049380:CDS |
| TTATAAATAAATAAACAAAT+AGG | 0.310244 | 7_2:+12596236 | Msa1049380:exon |
| TTTGTTGGTTCTGGACATTC+TGG | 0.311438 | 7_2:-12596054 | None:intergenic |
| CATATCCTTTATATATTTCA+AGG | 0.318200 | 7_2:-12594579 | None:intergenic |
| ATCAATAATTGAAGCAAATC+TGG | 0.319009 | 7_2:-12596082 | None:intergenic |
| GTTCACTTTGTCATTGGAAT+AGG | 0.323507 | 7_2:-12592544 | None:intergenic |
| AAATTGATTCCCTTAATTGA+TGG | 0.325335 | 7_2:-12594673 | None:intergenic |
| GATACCAACCTTAAGCATTA+TGG | 0.328993 | 7_2:-12595810 | None:intergenic |
| TTCCATTAACTTTCTTGAAT+AGG | 0.343440 | 7_2:-12594462 | None:intergenic |
| AATTTCCATCACTCCAATAA+TGG | 0.352953 | 7_2:-12596214 | None:intergenic |
| AACATGGTTCACTTTGTCAT+TGG | 0.361884 | 7_2:-12592550 | None:intergenic |
| AACTGCTGGAAACACCAAAT+TGG | 0.362727 | 7_2:-12592631 | None:intergenic |
| TCTAGGCTGTATGTCATAAT+TGG | 0.366231 | 7_2:+12595944 | Msa1049380:intron |
| CATGGTACTAGGTGCCAATT+TGG | 0.366934 | 7_2:+12592617 | Msa1049380:CDS |
| AAAATCCTTGAAATATATAA+AGG | 0.371676 | 7_2:+12594574 | Msa1049380:CDS |
| TAACTAAGTATGAGTACTTT+GGG | 0.380596 | 7_2:+12594485 | Msa1049380:CDS |
| GGAAAATATCCATCAATTAA+GGG | 0.391669 | 7_2:+12594664 | Msa1049380:CDS |
| GTCTCATTGTCATCTATTTG+TGG | 0.392413 | 7_2:-12592585 | None:intergenic |
| TATTTATAGGTTGAATTTCA+AGG | 0.403327 | 7_2:+12594414 | Msa1049380:intron |
| GTTGATATTGGAGGTGGAAA+TGG | 0.403826 | 7_2:+12594619 | Msa1049380:CDS |
| TTCTTGAATAGGTCAATCTC+TGG | 0.434820 | 7_2:-12594451 | None:intergenic |
| TGAAATATATAAAGGATATG+AGG | 0.436772 | 7_2:+12594582 | Msa1049380:CDS |
| ACACTCTCTGCCATGGTACT+AGG | 0.442707 | 7_2:+12592606 | Msa1049380:CDS |
| CTCTTCTGTCTATTTCTACT+CGG | 0.445033 | 7_2:+12592799 | Msa1049380:CDS |
| TTGAATATTTGGTTTACTTG+TGG | 0.449932 | 7_2:-12594514 | None:intergenic |
| ATAACTAAGTATGAGTACTT+TGG | 0.451042 | 7_2:+12594484 | Msa1049380:CDS |
| AGGAGATGCCATAATGCTTA+AGG | 0.462667 | 7_2:+12595802 | Msa1049380:CDS |
| AACACTCTGATTTGTCGAAT+CGG | 0.475473 | 7_2:+12592742 | Msa1049380:CDS |
| ATTGCAGCATTAAGAACTGC+TGG | 0.480012 | 7_2:-12592645 | None:intergenic |
| CACAATGCTACCATCATCAT+TGG | 0.482440 | 7_2:-12592823 | None:intergenic |
| GAAAATGCATCACCCATTCC+AGG | 0.488403 | 7_2:+12594715 | Msa1049380:CDS |
| ACTTTGGTTGATATTGGAGG+TGG | 0.490275 | 7_2:+12594613 | Msa1049380:CDS |
| CATTTAGGGATTGAGCATGT+TGG | 0.508771 | 7_2:+12595752 | Msa1049380:intron |
| TTGTTTGAAATCATTGGTGA+TGG | 0.517050 | 7_2:+12592678 | Msa1049380:CDS |
| TGTGTCACCCTGCTTTGATA+GGG | 0.518341 | 7_2:+12592934 | Msa1049380:CDS |
| TCAACTTTGGTTGATATTGG+AGG | 0.519640 | 7_2:+12594610 | Msa1049380:CDS |
| TACCACAACCCTATCAAAGC+AGG | 0.522755 | 7_2:-12592942 | None:intergenic |
| GCAAATCTGGATGCATTTGT+TGG | 0.524259 | 7_2:-12596069 | None:intergenic |
| ACCCTGCTTTGATAGGGTTG+TGG | 0.524365 | 7_2:+12592940 | Msa1049380:CDS |
| CAAATTGGCACCTAGTACCA+TGG | 0.530083 | 7_2:-12592616 | None:intergenic |
| TTTCTCCATTATTGGAGTGA+TGG | 0.540479 | 7_2:+12596209 | Msa1049380:CDS |
| GACAAATCAGAGTGTTGAGT+TGG | 0.543325 | 7_2:-12592735 | None:intergenic |
| ATCATGTTCATTAATGCTGG+TGG | 0.543605 | 7_2:+12596108 | Msa1049380:CDS |
| TTGCAAGCAAGCGCAACATA+CGG | 0.544131 | 7_2:-12592770 | None:intergenic |
| AGCATTATGGCATCTCCTTG+TGG | 0.554368 | 7_2:-12595797 | None:intergenic |
| AAATGGAAAGGTGATTCTTG+TGG | 0.554848 | 7_2:+12596020 | Msa1049380:CDS |
| AATATCATGTTCATTAATGC+TGG | 0.556116 | 7_2:+12596105 | Msa1049380:CDS |
| GAAATATATAAAGGATATGA+GGG | 0.561483 | 7_2:+12594583 | Msa1049380:CDS |
| GGCTGTATGTCATAATTGGT+CGG | 0.563483 | 7_2:+12595948 | Msa1049380:intron |
| ATATGAGGGAGTATCAACTT+TGG | 0.569528 | 7_2:+12594597 | Msa1049380:CDS |
| TTAGGGATTGAGCATGTTGG+AGG | 0.570708 | 7_2:+12595755 | Msa1049380:intron |
| TAGCAAAAGTATTTACCAGA+AGG | 0.577256 | 7_2:-12592864 | None:intergenic |
| AATAGTGATCGTGGTTATGT+TGG | 0.579280 | 7_2:+12592894 | Msa1049380:CDS |
| TCTACTCGGACCAATGATGA+TGG | 0.584557 | 7_2:+12592813 | Msa1049380:CDS |
| GTGACACATAAATGATGTGA+AGG | 0.592598 | 7_2:-12592919 | None:intergenic |
| AGCTTTGCCTCAAAATGGAA+AGG | 0.607753 | 7_2:+12596008 | Msa1049380:CDS |
| CAATGAGACACTCTCTGCCA+TGG | 0.626681 | 7_2:+12592599 | Msa1049380:CDS |
| ACCACAACCCTATCAAAGCA+GGG | 0.658650 | 7_2:-12592941 | None:intergenic |
| GTGGAGTGTGAGTTTCAACA+TGG | 0.690775 | 7_2:-12592566 | None:intergenic |
| TATGATGAAAATAGTGATCG+TGG | 0.700099 | 7_2:+12592885 | Msa1049380:CDS |
| ATGTTTGAAAGTATTCCACA+AGG | 0.713824 | 7_2:+12595782 | Msa1049380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAATAAATAATTAAACA+AGG | - | chr7_2:12592997-12593016 | None:intergenic | 10.0% |
| !! | TATATATATATCTTTATTAG+TGG | + | chr7_2:12593226-12593245 | Msa1049380:intron | 10.0% |
| !! | ATATATATATCTTTATTAGT+GGG | + | chr7_2:12593227-12593246 | Msa1049380:intron | 10.0% |
| !! | TTAAAAAAAACTATAACAAA+CGG | + | chr7_2:12594206-12594225 | Msa1049380:intron | 10.0% |
| !!! | AATATTGATTTTTTTTTCTT+CGG | + | chr7_2:12594863-12594882 | Msa1049380:intron | 10.0% |
| !! | ATTCACTTAAAAATTAATTA+AGG | - | chr7_2:12595116-12595135 | None:intergenic | 10.0% |
| !! | AATATAAACTTACAATTCAA+TGG | + | chr7_2:12593070-12593089 | Msa1049380:intron | 15.0% |
| !!! | TGAATATAGCTTTTTTTTTT+TGG | + | chr7_2:12593761-12593780 | Msa1049380:intron | 15.0% |
| !! | TTTAAAAAAACTCTAACAAA+CGG | + | chr7_2:12594137-12594156 | Msa1049380:intron | 15.0% |
| !!! | GTTTGTTATAGTTTTTTTTA+AGG | - | chr7_2:12594207-12594226 | None:intergenic | 15.0% |
| !! | TAAAAAAAACTATAACAAAC+GGG | + | chr7_2:12594207-12594226 | Msa1049380:intron | 15.0% |
| !! | AAAATCCTTGAAATATATAA+AGG | + | chr7_2:12594574-12594593 | Msa1049380:CDS | 15.0% |
| !!! | TTAATTTGATATCATCTAAA+AGG | + | chr7_2:12594786-12594805 | Msa1049380:intron | 15.0% |
| !! | GAAGAAAAAAAAATCAATAT+TGG | - | chr7_2:12594864-12594883 | None:intergenic | 15.0% |
| !!! | ATATTGATTTTTTTTTCTTC+GGG | + | chr7_2:12594864-12594883 | Msa1049380:intron | 15.0% |
| !!! | ACTCATATAACTAATTTTAT+TGG | + | chr7_2:12595044-12595063 | Msa1049380:intron | 15.0% |
| !!! | TAACTAATTTTATTGGTTTT+TGG | + | chr7_2:12595051-12595070 | Msa1049380:intron | 15.0% |
| !! | TTTAAGTGAATTTGAAAAAT+TGG | + | chr7_2:12595125-12595144 | Msa1049380:intron | 15.0% |
| !! | TTAAGTGAATTTGAAAAATT+GGG | + | chr7_2:12595126-12595145 | Msa1049380:intron | 15.0% |
| !!! | ATTCAATTTTCTTACTAATA+CGG | - | chr7_2:12595202-12595221 | None:intergenic | 15.0% |
| !! | TAAGAAAATTGAATATTGAA+CGG | + | chr7_2:12595208-12595227 | Msa1049380:intron | 15.0% |
| !!! | ATATAATGTCTAACTATTTT+TGG | + | chr7_2:12595257-12595276 | Msa1049380:intron | 15.0% |
| !! | TACAATATATTAGTTATCAA+GGG | - | chr7_2:12595425-12595444 | None:intergenic | 15.0% |
| !! | TTTATAATATGAATCTGAAA+AGG | + | chr7_2:12595550-12595569 | Msa1049380:intron | 15.0% |
| !!! | TTATTTTACTAAAATTAGTG+AGG | + | chr7_2:12595588-12595607 | Msa1049380:intron | 15.0% |
| !!! | TATTTTACTAAAATTAGTGA+GGG | + | chr7_2:12595589-12595608 | Msa1049380:intron | 15.0% |
| !!! | TATTTTCAATTCATAATCTT+GGG | - | chr7_2:12595723-12595742 | None:intergenic | 15.0% |
| !! | AAAATAGACAAATTACATTT+AGG | + | chr7_2:12595737-12595756 | Msa1049380:intron | 15.0% |
| !! | AAATAGACAAATTACATTTA+GGG | + | chr7_2:12595738-12595757 | Msa1049380:intron | 15.0% |
| !!! | ATACACTAGTCTTTTTTTTT+TGG | - | chr7_2:12593706-12593725 | None:intergenic | 20.0% |
| !!! | AACAAATCATTTAGTTTGTT+TGG | + | chr7_2:12594017-12594036 | Msa1049380:intron | 20.0% |
| !! | TTCTACCAAAATTAACTAAT+AGG | + | chr7_2:12594301-12594320 | Msa1049380:intron | 20.0% |
| !!! | TATTTATAGGTTGAATTTCA+AGG | + | chr7_2:12594414-12594433 | Msa1049380:intron | 20.0% |
| !!! | TCATTGATTTGTTGAATATT+TGG | - | chr7_2:12594528-12594547 | None:intergenic | 20.0% |
| !!! | GATTTTTTTCATGTGAATTT+TGG | - | chr7_2:12594560-12594579 | None:intergenic | 20.0% |
| !! | CATATCCTTTATATATTTCA+AGG | - | chr7_2:12594582-12594601 | None:intergenic | 20.0% |
| !! | TGAAATATATAAAGGATATG+AGG | + | chr7_2:12594582-12594601 | Msa1049380:CDS | 20.0% |
| !! | GAAATATATAAAGGATATGA+GGG | + | chr7_2:12594583-12594602 | Msa1049380:CDS | 20.0% |
| !!! | TTGAAATAACTTGGTTTTAT+GGG | + | chr7_2:12594749-12594768 | Msa1049380:intron | 20.0% |
| !!! | TTCAATTTTCTTACTAATAC+GGG | - | chr7_2:12595201-12595220 | None:intergenic | 20.0% |
| !! | GTACAATATATTAGTTATCA+AGG | - | chr7_2:12595426-12595445 | None:intergenic | 20.0% |
| !! | TGTTAAAATAATTGTTGAAC+TGG | - | chr7_2:12595698-12595717 | None:intergenic | 20.0% |
| !!! | CTATTTTCAATTCATAATCT+TGG | - | chr7_2:12595724-12595743 | None:intergenic | 20.0% |
| !! | TGTTAGAATGACATATAATT+TGG | - | chr7_2:12595849-12595868 | None:intergenic | 20.0% |
| !!! | TGCTAAAGAATATGAAATTT+TGG | + | chr7_2:12596143-12596162 | Msa1049380:CDS | 20.0% |
| !! | ATTCAACCAAAAAAATAACA+AGG | - | chr7_2:12596277-12596296 | None:intergenic | 20.0% |
| ! | TAAACAAGGTAAACAAAATC+AGG | - | chr7_2:12592983-12593002 | None:intergenic | 25.0% |
| !!! | TAGTTTGATAACATTTTGCT+TGG | - | chr7_2:12593331-12593350 | None:intergenic | 25.0% |
| !!! | GATTTTATTTTTTCCGGTAT+CGG | - | chr7_2:12593551-12593570 | None:intergenic | 25.0% |
| !!! | TCCTCTGATTTTATTTTTTC+CGG | - | chr7_2:12593557-12593576 | None:intergenic | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | + | chr7_2:12593660-12593679 | Msa1049380:intron | 25.0% |
| ! | AAAAAAAAGCTATATTCACG+AGG | - | chr7_2:12593759-12593778 | None:intergenic | 25.0% |
| ! | GGTCAAATGTAATATAAGAA+AGG | - | chr7_2:12593833-12593852 | None:intergenic | 25.0% |
| ! | AATCATACGATGAAGAATAA+TGG | - | chr7_2:12593863-12593882 | None:intergenic | 25.0% |
| !! | ATCTATTTTGTGTTTGTTTG+CGG | + | chr7_2:12593973-12593992 | Msa1049380:intron | 25.0% |
| ! | TTCAAATGAGAGAGAAAATA+TGG | - | chr7_2:12594095-12594114 | None:intergenic | 25.0% |
| !! | GAAAGCCTATTAGTTAATTT+TGG | - | chr7_2:12594309-12594328 | None:intergenic | 25.0% |
| ! | TTCCATTAACTTTCTTGAAT+AGG | - | chr7_2:12594465-12594484 | None:intergenic | 25.0% |
| ! | ATAACTAAGTATGAGTACTT+TGG | + | chr7_2:12594484-12594503 | Msa1049380:CDS | 25.0% |
| ! | TAACTAAGTATGAGTACTTT+GGG | + | chr7_2:12594485-12594504 | Msa1049380:CDS | 25.0% |
| !! | TTGAATATTTGGTTTACTTG+TGG | - | chr7_2:12594517-12594536 | None:intergenic | 25.0% |
| ! | CAAACTCTCAAAATGATTAT+TGG | + | chr7_2:12594643-12594662 | Msa1049380:CDS | 25.0% |
| ! | TGGAAAATATCCATCAATTA+AGG | + | chr7_2:12594663-12594682 | Msa1049380:CDS | 25.0% |
| ! | GGAAAATATCCATCAATTAA+GGG | + | chr7_2:12594664-12594683 | Msa1049380:CDS | 25.0% |
| !! | AAATTGATTCCCTTAATTGA+TGG | - | chr7_2:12594676-12594695 | None:intergenic | 25.0% |
| !! | CTCTTTTTCTTGAAATAACT+TGG | + | chr7_2:12594740-12594759 | Msa1049380:intron | 25.0% |
| !!! | CTTGAAATAACTTGGTTTTA+TGG | + | chr7_2:12594748-12594767 | Msa1049380:intron | 25.0% |
| ! | TTCGGGAAATTTGAAAAAAT+AGG | + | chr7_2:12594881-12594900 | Msa1049380:intron | 25.0% |
| !!! | GTAGAGTAAAATTTAGTTTG+TGG | + | chr7_2:12595004-12595023 | Msa1049380:intron | 25.0% |
| ! | AATTATCCACAATTATTCGA+AGG | + | chr7_2:12595076-12595095 | Msa1049380:intron | 25.0% |
| ! | AATTAATTAAGGTAAGACCT+AGG | - | chr7_2:12595105-12595124 | None:intergenic | 25.0% |
| !! | CTTTACCTTATAGATAGTTT+TGG | + | chr7_2:12595153-12595172 | Msa1049380:intron | 25.0% |
| ! | ATGTACCAAAACTATCTATA+AGG | - | chr7_2:12595161-12595180 | None:intergenic | 25.0% |
| !!! | ACATGTGAGTTTTGTTTTTT+TGG | - | chr7_2:12595356-12595375 | None:intergenic | 25.0% |
| ! | AGTTTCAAGCACATATAATA+AGG | - | chr7_2:12595480-12595499 | None:intergenic | 25.0% |
| ! | AATATGAATCTGAAAAGGAA+AGG | + | chr7_2:12595555-12595574 | Msa1049380:intron | 25.0% |
| ! | ATATGAATCTGAAAAGGAAA+GGG | + | chr7_2:12595556-12595575 | Msa1049380:intron | 25.0% |
| ! | GAATGTCATTCTAATATGTA+TGG | - | chr7_2:12595641-12595660 | None:intergenic | 25.0% |
| ! | ATCAATAATTGAAGCAAATC+TGG | - | chr7_2:12596085-12596104 | None:intergenic | 25.0% |
| ! | AATATCATGTTCATTAATGC+TGG | + | chr7_2:12596105-12596124 | Msa1049380:CDS | 25.0% |
| !!! | CAGTTTCCTTGTTATTTTTT+TGG | + | chr7_2:12596268-12596287 | Msa1049380:three_prime_UTR | 25.0% |
| !!! | GGAACTCATGTTTGTTTTTT+TGG | - | chr7_2:12592526-12592545 | None:intergenic | 30.0% |
| ! | CTCAACTTGTTTGAAATCAT+TGG | + | chr7_2:12592672-12592691 | Msa1049380:CDS | 30.0% |
| ! | TTGTTTGAAATCATTGGTGA+TGG | + | chr7_2:12592678-12592697 | Msa1049380:CDS | 30.0% |
| !! | TAGCAAAAGTATTTACCAGA+AGG | - | chr7_2:12592867-12592886 | None:intergenic | 30.0% |
| TATGATGAAAATAGTGATCG+TGG | + | chr7_2:12592885-12592904 | Msa1049380:CDS | 30.0% | |
| ACCGGAAAAAATAAAATCAG+AGG | + | chr7_2:12593553-12593572 | Msa1049380:intron | 30.0% | |
| !!! | TAGTCTTTTTTTTTTGGTGG+CGG | - | chr7_2:12593700-12593719 | None:intergenic | 30.0% |
| !!! | CACTAGTCTTTTTTTTTTGG+TGG | - | chr7_2:12593703-12593722 | None:intergenic | 30.0% |
| AAAGTATAGCTATATTCACG+AGG | - | chr7_2:12593807-12593826 | None:intergenic | 30.0% | |
| !! | ATGAAGAATAATGGATGAGA+GGG | - | chr7_2:12593854-12593873 | None:intergenic | 30.0% |
| TATTCTTCATCGTATGATTG+AGG | + | chr7_2:12593864-12593883 | Msa1049380:intron | 30.0% | |
| ATTCTTCATCGTATGATTGA+GGG | + | chr7_2:12593865-12593884 | Msa1049380:intron | 30.0% | |
| GACCTATTCAAGAAAGTTAA+TGG | + | chr7_2:12594460-12594479 | Msa1049380:CDS | 30.0% | |
| ! | GTATCAACTTTGGTTGATAT+TGG | + | chr7_2:12594607-12594626 | Msa1049380:CDS | 30.0% |
| !! | ATTTCAAGAAAAAGAGTACC+TGG | - | chr7_2:12594736-12594755 | None:intergenic | 30.0% |
| !!! | AAATAACTTGGTTTTATGGG+AGG | + | chr7_2:12594752-12594771 | Msa1049380:intron | 30.0% |
| GAACTGGTCATTAATACAAA+GGG | - | chr7_2:12595682-12595701 | None:intergenic | 30.0% | |
| TGAACTGGTCATTAATACAA+AGG | - | chr7_2:12595683-12595702 | None:intergenic | 30.0% | |
| !! | ATGTTTGAAAGTATTCCACA+AGG | + | chr7_2:12595782-12595801 | Msa1049380:CDS | 30.0% |
| CTCAATAAAATAGTGCTTAC+TGG | + | chr7_2:12595895-12595914 | Msa1049380:intron | 30.0% | |
| AATTTCCATCACTCCAATAA+TGG | - | chr7_2:12596217-12596236 | None:intergenic | 30.0% | |
| GTTCACTTTGTCATTGGAAT+AGG | - | chr7_2:12592547-12592566 | None:intergenic | 35.0% | |
| AACATGGTTCACTTTGTCAT+TGG | - | chr7_2:12592553-12592572 | None:intergenic | 35.0% | |
| GTCTCATTGTCATCTATTTG+TGG | - | chr7_2:12592588-12592607 | None:intergenic | 35.0% | |
| ! | AACACTCTGATTTGTCGAAT+CGG | + | chr7_2:12592742-12592761 | Msa1049380:CDS | 35.0% |
| !! | CTCTTCTGTCTATTTCTACT+CGG | + | chr7_2:12592799-12592818 | Msa1049380:CDS | 35.0% |
| AATAGTGATCGTGGTTATGT+TGG | + | chr7_2:12592894-12592913 | Msa1049380:CDS | 35.0% | |
| GTGACACATAAATGATGTGA+AGG | - | chr7_2:12592922-12592941 | None:intergenic | 35.0% | |
| AAGGTAAACAAAATCAGGCA+AGG | - | chr7_2:12592978-12592997 | None:intergenic | 35.0% | |
| GGATAATGCATAATACATGC+AGG | - | chr7_2:12593395-12593414 | None:intergenic | 35.0% | |
| TTAAACTAACACACCGATAC+CGG | + | chr7_2:12593535-12593554 | Msa1049380:intron | 35.0% | |
| !!! | TTTTTTTTTTGGTGGCGGTT+GGG | - | chr7_2:12593695-12593714 | None:intergenic | 35.0% |
| ! | TTTGGAACCTCGTGAATTTA+TGG | + | chr7_2:12593779-12593798 | Msa1049380:intron | 35.0% |
| !! | GATGAAGAATAATGGATGAG+AGG | - | chr7_2:12593855-12593874 | None:intergenic | 35.0% |
| TTCTTGAATAGGTCAATCTC+TGG | - | chr7_2:12594454-12594473 | None:intergenic | 35.0% | |
| !! | ATATGAGGGAGTATCAACTT+TGG | + | chr7_2:12594597-12594616 | Msa1049380:CDS | 35.0% |
| ! | TCAACTTTGGTTGATATTGG+AGG | + | chr7_2:12594610-12594629 | Msa1049380:CDS | 35.0% |
| ! | CATTTTCAATCACTTGAGGA+AGG | - | chr7_2:12594702-12594721 | None:intergenic | 35.0% |
| ! | GATGCATTTTCAATCACTTG+AGG | - | chr7_2:12594706-12594725 | None:intergenic | 35.0% |
| !! | AGAAAAAGAGTACCTGGAAT+GGG | - | chr7_2:12594730-12594749 | None:intergenic | 35.0% |
| !! | AAGAAAAAGAGTACCTGGAA+TGG | - | chr7_2:12594731-12594750 | None:intergenic | 35.0% |
| AGGTTACCTTCGAATAATTG+TGG | - | chr7_2:12595085-12595104 | None:intergenic | 35.0% | |
| CAATTATTCGAAGGTAACCT+AGG | + | chr7_2:12595085-12595104 | Msa1049380:intron | 35.0% | |
| TGACGATTCCCGAATATTTA+GGG | + | chr7_2:12595397-12595416 | Msa1049380:intron | 35.0% | |
| TGATATCCTAGAGGGAAAAT+GGG | - | chr7_2:12595448-12595467 | None:intergenic | 35.0% | |
| TTGATATCCTAGAGGGAAAA+TGG | - | chr7_2:12595449-12595468 | None:intergenic | 35.0% | |
| GAGTTCTTTGATATCCTAGA+GGG | - | chr7_2:12595456-12595475 | None:intergenic | 35.0% | |
| AGAGTTCTTTGATATCCTAG+AGG | - | chr7_2:12595457-12595476 | None:intergenic | 35.0% | |
| !!! | TACCTTTGAAGCTTCTTTTG+TGG | + | chr7_2:12595614-12595633 | Msa1049380:intron | 35.0% |
| GATACCAACCTTAAGCATTA+TGG | - | chr7_2:12595813-12595832 | None:intergenic | 35.0% | |
| TATCCCTATTTCGTTGTTCT+AGG | + | chr7_2:12595927-12595946 | Msa1049380:intron | 35.0% | |
| TCTAGGCTGTATGTCATAAT+TGG | + | chr7_2:12595944-12595963 | Msa1049380:intron | 35.0% | |
| TACAAAGCTTTGCCTCAAAA+TGG | + | chr7_2:12596003-12596022 | Msa1049380:CDS | 35.0% | |
| ! | AGAATCACCTTTCCATTTTG+AGG | - | chr7_2:12596018-12596037 | None:intergenic | 35.0% |
| AAATGGAAAGGTGATTCTTG+TGG | + | chr7_2:12596020-12596039 | Msa1049380:CDS | 35.0% | |
| ATCATGTTCATTAATGCTGG+TGG | + | chr7_2:12596108-12596127 | Msa1049380:CDS | 35.0% | |
| !!! | GAAATTTTGGCTCAACAATC+TGG | + | chr7_2:12596156-12596175 | Msa1049380:CDS | 35.0% |
| TGTTGTGCTTTCTCCATTAT+TGG | + | chr7_2:12596201-12596220 | Msa1049380:CDS | 35.0% | |
| TTTCTCCATTATTGGAGTGA+TGG | + | chr7_2:12596209-12596228 | Msa1049380:CDS | 35.0% | |
| AACTGCTGGAAACACCAAAT+TGG | - | chr7_2:12592634-12592653 | None:intergenic | 40.0% | |
| ATTGCAGCATTAAGAACTGC+TGG | - | chr7_2:12592648-12592667 | None:intergenic | 40.0% | |
| !! | GACAAATCAGAGTGTTGAGT+TGG | - | chr7_2:12592738-12592757 | None:intergenic | 40.0% |
| CACAATGCTACCATCATCAT+TGG | - | chr7_2:12592826-12592845 | None:intergenic | 40.0% | |
| ATTAGTGGGAAATGTGTTGC+AGG | + | chr7_2:12593241-12593260 | Msa1049380:intron | 40.0% | |
| TGCATAATACATGCAGGAGT+CGG | - | chr7_2:12593389-12593408 | None:intergenic | 40.0% | |
| GAGCTTAGCTCACTTGATAA+AGG | - | chr7_2:12593416-12593435 | None:intergenic | 40.0% | |
| TATCAAGTGAGCTAAGCTCA+TGG | + | chr7_2:12593417-12593436 | Msa1049380:intron | 40.0% | |
| ATCAAGTGAGCTAAGCTCAT+GGG | + | chr7_2:12593418-12593437 | Msa1049380:intron | 40.0% | |
| ! | ACTAGTGAGTTTAGCTCAGT+TGG | + | chr7_2:12593623-12593642 | Msa1049380:intron | 40.0% |
| ! | TGAGTTTAGCTCAGTTGGTA+TGG | + | chr7_2:12593628-12593647 | Msa1049380:intron | 40.0% |
| !!! | CTTTTTTTTTTGGTGGCGGT+TGG | - | chr7_2:12593696-12593715 | None:intergenic | 40.0% |
| ! | GATTGAGGGATCGTTTGTTA+CGG | + | chr7_2:12593879-12593898 | Msa1049380:intron | 40.0% |
| ! | ACTTTGGTTGATATTGGAGG+TGG | + | chr7_2:12594613-12594632 | Msa1049380:CDS | 40.0% |
| GTTGATATTGGAGGTGGAAA+TGG | + | chr7_2:12594619-12594638 | Msa1049380:CDS | 40.0% | |
| GTGACGATTCCCGAATATTT+AGG | + | chr7_2:12595396-12595415 | Msa1049380:intron | 40.0% | |
| TCAAGGGAGCCCTAAATATT+CGG | - | chr7_2:12595409-12595428 | None:intergenic | 40.0% | |
| ! | ATTGTACCCATTTTCCCTCT+AGG | + | chr7_2:12595439-12595458 | Msa1049380:intron | 40.0% |
| GACCACAAAAGAAGCTTCAA+AGG | - | chr7_2:12595619-12595638 | None:intergenic | 40.0% | |
| CATTTAGGGATTGAGCATGT+TGG | + | chr7_2:12595752-12595771 | Msa1049380:intron | 40.0% | |
| AGGAGATGCCATAATGCTTA+AGG | + | chr7_2:12595802-12595821 | Msa1049380:CDS | 40.0% | |
| GATGCCATAATGCTTAAGGT+TGG | + | chr7_2:12595806-12595825 | Msa1049380:intron | 40.0% | |
| CAGCCTAGAACAACGAAATA+GGG | - | chr7_2:12595933-12595952 | None:intergenic | 40.0% | |
| ACAGCCTAGAACAACGAAAT+AGG | - | chr7_2:12595934-12595953 | None:intergenic | 40.0% | |
| GGCTGTATGTCATAATTGGT+CGG | + | chr7_2:12595948-12595967 | Msa1049380:intron | 40.0% | |
| AGCTTTGCCTCAAAATGGAA+AGG | + | chr7_2:12596008-12596027 | Msa1049380:CDS | 40.0% | |
| !! | TTTGTTGGTTCTGGACATTC+TGG | - | chr7_2:12596057-12596076 | None:intergenic | 40.0% |
| GCAAATCTGGATGCATTTGT+TGG | - | chr7_2:12596072-12596091 | None:intergenic | 40.0% | |
| GTGGAGTGTGAGTTTCAACA+TGG | - | chr7_2:12592569-12592588 | None:intergenic | 45.0% | |
| CAAATTGGCACCTAGTACCA+TGG | - | chr7_2:12592619-12592638 | None:intergenic | 45.0% | |
| CATGGTACTAGGTGCCAATT+TGG | + | chr7_2:12592617-12592636 | Msa1049380:CDS | 45.0% | |
| TTGCAAGCAAGCGCAACATA+CGG | - | chr7_2:12592773-12592792 | None:intergenic | 45.0% | |
| TCTACTCGGACCAATGATGA+TGG | + | chr7_2:12592813-12592832 | Msa1049380:CDS | 45.0% | |
| ! | GTTTTTGCGATCACACCTTC+TGG | + | chr7_2:12592849-12592868 | Msa1049380:CDS | 45.0% |
| ATGTGTCACCCTGCTTTGAT+AGG | + | chr7_2:12592933-12592952 | Msa1049380:CDS | 45.0% | |
| TGTGTCACCCTGCTTTGATA+GGG | + | chr7_2:12592934-12592953 | Msa1049380:CDS | 45.0% | |
| ACCACAACCCTATCAAAGCA+GGG | - | chr7_2:12592944-12592963 | None:intergenic | 45.0% | |
| TACCACAACCCTATCAAAGC+AGG | - | chr7_2:12592945-12592964 | None:intergenic | 45.0% | |
| GCATAATACATGCAGGAGTC+GGG | - | chr7_2:12593388-12593407 | None:intergenic | 45.0% | |
| CGAGGTTCCATAAATTCACG+AGG | - | chr7_2:12593789-12593808 | None:intergenic | 45.0% | |
| GAAAATGCATCACCCATTCC+AGG | + | chr7_2:12594715-12594734 | Msa1049380:CDS | 45.0% | |
| CAAGGGAGCCCTAAATATTC+GGG | - | chr7_2:12595408-12595427 | None:intergenic | 45.0% | |
| TTAGGGATTGAGCATGTTGG+AGG | + | chr7_2:12595755-12595774 | Msa1049380:intron | 45.0% | |
| AGCATTATGGCATCTCCTTG+TGG | - | chr7_2:12595800-12595819 | None:intergenic | 45.0% | |
| !! | CTGGATGCATTTGTTGGTTC+TGG | - | chr7_2:12596066-12596085 | None:intergenic | 45.0% |
| !! | AAAAATAATTTAACTATTAA+TGG | - | chr7_2:12594331-12594350 | None:intergenic | 5.0% |
| !!! | CATTTTTATAATATATTTAT+AGG | + | chr7_2:12594401-12594420 | Msa1049380:intron | 5.0% |
| !!! | ATAAAAATTAAATTAATTTG+TGG | - | chr7_2:12594933-12594952 | None:intergenic | 5.0% |
| !! | TTATAAATAAATAAACAAAT+AGG | + | chr7_2:12596236-12596255 | Msa1049380:exon | 5.0% |
| CAATGAGACACTCTCTGCCA+TGG | + | chr7_2:12592599-12592618 | Msa1049380:CDS | 50.0% | |
| ACACTCTCTGCCATGGTACT+AGG | + | chr7_2:12592606-12592625 | Msa1049380:CDS | 50.0% | |
| ACCCTGCTTTGATAGGGTTG+TGG | + | chr7_2:12592940-12592959 | Msa1049380:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 12592501 | 12596341 | 12592501 | ID=Msa1049380;Name=Msa1049380 |
| chr7_2 | mRNA | 12592501 | 12596341 | 12592501 | ID=Msa1049380-mRNA-1;Parent=Msa1049380;Name=Msa1049380-mRNA-1;_AED=0.15;_eAED=0.15;_QI=36|1|1|1|1|1|4|96|366 |
| chr7_2 | exon | 12592501 | 12592961 | 12592501 | ID=Msa1049380-mRNA-1:exon:3174;Parent=Msa1049380-mRNA-1 |
| chr7_2 | exon | 12594423 | 12594736 | 12594423 | ID=Msa1049380-mRNA-1:exon:3175;Parent=Msa1049380-mRNA-1 |
| chr7_2 | exon | 12595759 | 12595823 | 12595759 | ID=Msa1049380-mRNA-1:exon:3176;Parent=Msa1049380-mRNA-1 |
| chr7_2 | exon | 12595949 | 12596341 | 12595949 | ID=Msa1049380-mRNA-1:exon:3177;Parent=Msa1049380-mRNA-1 |
| chr7_2 | five_prime_UTR | 12592501 | 12592536 | 12592501 | ID=Msa1049380-mRNA-1:five_prime_utr;Parent=Msa1049380-mRNA-1 |
| chr7_2 | CDS | 12592537 | 12592961 | 12592537 | ID=Msa1049380-mRNA-1:cds;Parent=Msa1049380-mRNA-1 |
| chr7_2 | CDS | 12594423 | 12594736 | 12594423 | ID=Msa1049380-mRNA-1:cds;Parent=Msa1049380-mRNA-1 |
| chr7_2 | CDS | 12595759 | 12595823 | 12595759 | ID=Msa1049380-mRNA-1:cds;Parent=Msa1049380-mRNA-1 |
| chr7_2 | CDS | 12595949 | 12596245 | 12595949 | ID=Msa1049380-mRNA-1:cds;Parent=Msa1049380-mRNA-1 |
| chr7_2 | three_prime_UTR | 12596246 | 12596341 | 12596246 | ID=Msa1049380-mRNA-1:three_prime_utr;Parent=Msa1049380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
