Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581370 | AES92349.2 | 97.976 | 247 | 5 | 0 | 1 | 247 | 1 | 247 | 1.14e-180 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581370 | sp|Q38910|XTH23_ARATH | 70.472 | 254 | 57 | 2 | 8 | 245 | 5 | 256 | 6.68e-131 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581370 | G7JD11 | 97.976 | 247 | 5 | 0 | 1 | 247 | 1 | 247 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0169050 | Msa0581370 | 0.804995 | 1.652604e-49 | -8.615850e-47 |
| Msa0192470 | Msa0581370 | 0.815136 | 1.078960e-51 | -8.615850e-47 |
| Msa0207680 | Msa0581370 | 0.829382 | 5.312426e-55 | -8.615850e-47 |
| Msa0207690 | Msa0581370 | 0.812537 | 4.033243e-51 | -8.615850e-47 |
| Msa0209360 | Msa0581370 | 0.826314 | 2.903567e-54 | -8.615850e-47 |
| Msa0222460 | Msa0581370 | 0.811030 | 8.581647e-51 | -8.615850e-47 |
| Msa0373060 | Msa0581370 | 0.813310 | 2.731347e-51 | -8.615850e-47 |
| Msa0421580 | Msa0581370 | 0.818146 | 2.282831e-52 | -8.615850e-47 |
| Msa0467600 | Msa0581370 | 0.811090 | 8.331820e-51 | -8.615850e-47 |
| Msa0267400 | Msa0581370 | 0.840736 | 7.263536e-58 | -8.615850e-47 |
| Msa0272840 | Msa0581370 | 0.810818 | 9.542658e-51 | -8.615850e-47 |
| Msa0276610 | Msa0581370 | -0.802241 | 6.159632e-49 | -8.615850e-47 |
| Msa0295680 | Msa0581370 | 0.812179 | 4.828561e-51 | -8.615850e-47 |
| Msa0301750 | Msa0581370 | 0.807073 | 6.038534e-50 | -8.615850e-47 |
| Msa0510120 | Msa0581370 | 0.829784 | 4.241972e-55 | -8.615850e-47 |
| Msa0559660 | Msa0581370 | 0.839328 | 1.692636e-57 | -8.615850e-47 |
| Msa0581370 | Msa0581380 | 0.858819 | 6.340206e-63 | -8.615850e-47 |
| Msa0581370 | Msa0608060 | 0.815653 | 8.281728e-52 | -8.615850e-47 |
| Msa0581370 | Msa0648430 | 0.800764 | 1.236404e-48 | -8.615850e-47 |
| Msa0581370 | Msa0648440 | 0.823248 | 1.534359e-53 | -8.615850e-47 |
| Msa0581370 | Msa0654480 | 0.804255 | 2.358008e-49 | -8.615850e-47 |
| Msa0581370 | Msa0719740 | 0.848502 | 5.884543e-60 | -8.615850e-47 |
| Msa0581370 | Msa0731990 | 0.803023 | 4.247614e-49 | -8.615850e-47 |
| Msa0581370 | Msa0802750 | 0.853263 | 2.681980e-61 | -8.615850e-47 |
| Msa0581370 | Msa0841060 | 0.859416 | 4.198743e-63 | -8.615850e-47 |
| Msa0581370 | Msa0930210 | 0.809788 | 1.591127e-50 | -8.615850e-47 |
| Msa0581370 | Msa1075320 | 0.807103 | 5.952377e-50 | -8.615850e-47 |
| Msa0581370 | Msa1088160 | 0.819109 | 1.379848e-52 | -8.615850e-47 |
| Msa0581370 | Msa1162750 | 0.856696 | 2.702487e-62 | -8.615850e-47 |
| Msa0581370 | Msa1200270 | 0.825992 | 3.463447e-54 | -8.615850e-47 |
| Msa0581370 | Msa1200290 | 0.808100 | 3.655358e-50 | -8.615850e-47 |
| Msa0581370 | Msa1221290 | 0.933908 | 9.137252e-96 | -8.615850e-47 |
| Msa0581370 | Msa1221310 | 0.826897 | 2.108254e-54 | -8.615850e-47 |
| Msa0581370 | Msa1234420 | 0.804793 | 1.821228e-49 | -8.615850e-47 |
| Msa0581370 | Msa1265290 | 0.864852 | 9.024010e-65 | -8.615850e-47 |
| Msa0581370 | Msa1337450 | 0.925327 | 2.132051e-90 | -8.615850e-47 |
| Msa0581370 | Msa1337460 | 0.870432 | 1.465821e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581370 | MtrunA17_Chr7g0258911 | 79.918 | 244 | 35 | 1 | 16 | 245 | 9 | 252 | 2.22e-145 | 409 |
| Msa0581370 | MtrunA17_Chr4g0072611 | 78.689 | 244 | 38 | 1 | 16 | 245 | 10 | 253 | 1.29e-142 | 402 |
| Msa0581370 | MtrunA17_Chr4g0072671 | 80.169 | 237 | 29 | 1 | 27 | 245 | 22 | 258 | 9.25e-137 | 388 |
| Msa0581370 | MtrunA17_Chr4g0072601 | 66.929 | 254 | 69 | 2 | 6 | 245 | 4 | 256 | 3.57e-125 | 358 |
| Msa0581370 | MtrunA17_Chr2g0299061 | 77.103 | 214 | 49 | 0 | 14 | 227 | 9 | 222 | 2.73e-123 | 354 |
| Msa0581370 | MtrunA17_Chr4g0071341 | 70.711 | 239 | 55 | 1 | 22 | 245 | 16 | 254 | 5.84e-123 | 353 |
| Msa0581370 | MtrunA17_Chr3g0122021 | 68.379 | 253 | 69 | 3 | 1 | 245 | 1 | 250 | 9.56e-122 | 350 |
| Msa0581370 | MtrunA17_Chr8g0377841 | 67.729 | 251 | 70 | 2 | 4 | 245 | 6 | 254 | 4.42e-121 | 348 |
| Msa0581370 | MtrunA17_Chr3g0122031 | 70.248 | 242 | 63 | 2 | 12 | 245 | 10 | 250 | 4.82e-121 | 348 |
| Msa0581370 | MtrunA17_Chr8g0389641 | 73.500 | 200 | 48 | 2 | 6 | 205 | 9 | 203 | 1.68e-106 | 310 |
| Msa0581370 | MtrunA17_Chr4g0072681 | 69.907 | 216 | 43 | 2 | 52 | 245 | 1 | 216 | 2.98e-106 | 309 |
| Msa0581370 | MtrunA17_Chr5g0443391 | 57.870 | 216 | 91 | 0 | 12 | 227 | 9 | 224 | 5.29e-89 | 267 |
| Msa0581370 | MtrunA17_Chr6g0486581 | 57.273 | 220 | 91 | 2 | 13 | 231 | 7 | 224 | 7.38e-88 | 264 |
| Msa0581370 | MtrunA17_Chr3g0096651 | 58.937 | 207 | 85 | 0 | 24 | 230 | 23 | 229 | 4.22e-86 | 259 |
| Msa0581370 | MtrunA17_Chr2g0323161 | 55.399 | 213 | 93 | 1 | 10 | 222 | 4 | 214 | 2.69e-84 | 255 |
| Msa0581370 | MtrunA17_Chr4g0054451 | 51.982 | 227 | 107 | 2 | 3 | 228 | 7 | 232 | 3.09e-84 | 255 |
| Msa0581370 | MtrunA17_Chr6g0461761 | 50.965 | 259 | 109 | 3 | 5 | 245 | 3 | 261 | 3.64e-84 | 254 |
| Msa0581370 | MtrunA17_Chr6g0461731 | 51.163 | 258 | 105 | 4 | 6 | 245 | 30 | 284 | 1.46e-83 | 254 |
| Msa0581370 | MtrunA17_Chr7g0252621 | 54.667 | 225 | 101 | 1 | 7 | 231 | 9 | 232 | 1.70e-83 | 253 |
| Msa0581370 | MtrunA17_Chr7g0252631 | 58.706 | 201 | 83 | 0 | 31 | 231 | 32 | 232 | 5.76e-83 | 251 |
| Msa0581370 | MtrunA17_Chr4g0023961 | 53.704 | 216 | 95 | 2 | 7 | 222 | 6 | 216 | 8.79e-83 | 251 |
| Msa0581370 | MtrunA17_Chr7g0252601 | 55.804 | 224 | 95 | 2 | 12 | 231 | 11 | 234 | 3.90e-82 | 249 |
| Msa0581370 | MtrunA17_Chr4g0054431 | 52.511 | 219 | 102 | 2 | 12 | 228 | 12 | 230 | 7.75e-82 | 249 |
| Msa0581370 | MtrunA17_Chr1g0206681 | 50.000 | 232 | 114 | 1 | 12 | 241 | 15 | 246 | 6.84e-79 | 241 |
| Msa0581370 | MtrunA17_Chr1g0206081 | 45.038 | 262 | 133 | 2 | 16 | 266 | 12 | 273 | 2.47e-74 | 230 |
| Msa0581370 | MtrunA17_Chr8g0390201 | 64.706 | 136 | 48 | 0 | 96 | 231 | 15 | 150 | 9.91e-64 | 200 |
| Msa0581370 | MtrunA17_Chr8g0340001 | 53.571 | 168 | 77 | 1 | 62 | 229 | 8 | 174 | 6.73e-60 | 191 |
| Msa0581370 | MtrunA17_Chr4g0072641 | 97.701 | 87 | 2 | 0 | 161 | 247 | 37 | 123 | 2.29e-57 | 181 |
| Msa0581370 | MtrunA17_Chr2g0303861 | 45.500 | 200 | 104 | 4 | 31 | 229 | 29 | 224 | 3.15e-53 | 175 |
| Msa0581370 | MtrunA17_Chr7g0264731 | 42.130 | 216 | 112 | 5 | 24 | 231 | 30 | 240 | 4.69e-52 | 172 |
| Msa0581370 | MtrunA17_Chr4g0028221 | 37.722 | 281 | 149 | 8 | 5 | 264 | 12 | 287 | 1.23e-50 | 169 |
| Msa0581370 | MtrunA17_Chr2g0303721 | 42.174 | 230 | 118 | 6 | 13 | 239 | 10 | 227 | 2.00e-50 | 167 |
| Msa0581370 | MtrunA17_Chr4g0072631 | 97.436 | 78 | 2 | 0 | 1 | 78 | 1 | 78 | 3.24e-50 | 161 |
| Msa0581370 | MtrunA17_Chr7g0235541 | 54.430 | 158 | 63 | 4 | 78 | 230 | 1 | 154 | 3.36e-50 | 165 |
| Msa0581370 | MtrunA17_Chr1g0180451 | 41.905 | 210 | 109 | 5 | 30 | 231 | 39 | 243 | 7.26e-50 | 167 |
| Msa0581370 | MtrunA17_Chr8g0375981 | 38.326 | 227 | 134 | 3 | 1 | 222 | 1 | 226 | 3.53e-49 | 166 |
| Msa0581370 | MtrunA17_Chr2g0327411 | 40.400 | 250 | 125 | 9 | 30 | 269 | 53 | 288 | 3.79e-48 | 162 |
| Msa0581370 | MtrunA17_Chr1g0161951 | 39.381 | 226 | 123 | 4 | 10 | 222 | 4 | 228 | 6.80e-48 | 162 |
| Msa0581370 | MtrunA17_Chr8g0365231 | 40.212 | 189 | 107 | 3 | 35 | 218 | 50 | 237 | 4.75e-43 | 149 |
| Msa0581370 | MtrunA17_Chr5g0410621 | 38.071 | 197 | 116 | 3 | 31 | 222 | 42 | 237 | 6.22e-43 | 150 |
| Msa0581370 | MtrunA17_Chr8g0382041 | 37.879 | 198 | 114 | 4 | 31 | 221 | 34 | 229 | 1.34e-39 | 141 |
| Msa0581370 | MtrunA17_Chr8g0390181 | 47.191 | 89 | 43 | 2 | 12 | 98 | 7 | 93 | 1.10e-17 | 76.6 |
| Msa0581370 | MtrunA17_Chr8g0350711 | 31.609 | 174 | 111 | 4 | 53 | 224 | 54 | 221 | 4.36e-14 | 70.1 |
| Msa0581370 | MtrunA17_Chr8g0374231 | 37.500 | 80 | 50 | 0 | 187 | 266 | 1 | 80 | 1.63e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581370 | AT4G25810.1 | 70.472 | 254 | 57 | 2 | 8 | 245 | 5 | 256 | 6.79e-132 | 376 |
| Msa0581370 | AT5G57560.1 | 68.504 | 254 | 62 | 2 | 9 | 245 | 2 | 254 | 1.48e-128 | 367 |
| Msa0581370 | AT4G30270.1 | 71.245 | 233 | 65 | 1 | 13 | 245 | 8 | 238 | 5.18e-127 | 363 |
| Msa0581370 | AT5G57550.1 | 68.127 | 251 | 64 | 2 | 11 | 245 | 5 | 255 | 8.68e-126 | 360 |
| Msa0581370 | AT5G57540.1 | 62.313 | 268 | 91 | 4 | 28 | 291 | 23 | 284 | 1.87e-116 | 337 |
| Msa0581370 | AT4G25820.1 | 61.852 | 270 | 95 | 3 | 22 | 287 | 21 | 286 | 2.05e-116 | 337 |
| Msa0581370 | AT5G57530.1 | 61.710 | 269 | 93 | 4 | 27 | 291 | 23 | 285 | 6.80e-116 | 335 |
| Msa0581370 | AT4G14130.1 | 57.042 | 284 | 114 | 4 | 8 | 287 | 6 | 285 | 2.81e-113 | 329 |
| Msa0581370 | AT5G48070.1 | 59.600 | 250 | 90 | 2 | 7 | 245 | 5 | 254 | 4.22e-113 | 328 |
| Msa0581370 | AT3G23730.1 | 58.188 | 287 | 110 | 4 | 11 | 290 | 8 | 291 | 1.00e-112 | 327 |
| Msa0581370 | AT2G18800.1 | 66.972 | 218 | 72 | 0 | 8 | 225 | 5 | 222 | 1.70e-112 | 327 |
| Msa0581370 | AT4G30290.1 | 62.348 | 247 | 81 | 3 | 10 | 245 | 4 | 249 | 1.73e-106 | 311 |
| Msa0581370 | AT4G30280.1 | 59.761 | 251 | 90 | 2 | 6 | 245 | 4 | 254 | 4.97e-105 | 308 |
| Msa0581370 | AT1G65310.2 | 63.319 | 229 | 73 | 2 | 28 | 245 | 48 | 276 | 1.33e-102 | 302 |
| Msa0581370 | AT1G65310.1 | 63.319 | 229 | 73 | 2 | 28 | 245 | 26 | 254 | 1.69e-102 | 301 |
| Msa0581370 | AT4G28850.1 | 55.556 | 225 | 96 | 2 | 1 | 225 | 1 | 221 | 1.37e-86 | 261 |
| Msa0581370 | AT5G13870.2 | 52.549 | 255 | 101 | 3 | 11 | 245 | 7 | 261 | 5.01e-85 | 257 |
| Msa0581370 | AT5G13870.1 | 52.549 | 255 | 101 | 3 | 11 | 245 | 7 | 261 | 5.01e-85 | 257 |
| Msa0581370 | AT5G13870.3 | 52.549 | 255 | 101 | 3 | 11 | 245 | 7 | 261 | 5.01e-85 | 257 |
| Msa0581370 | AT5G65730.1 | 51.584 | 221 | 101 | 3 | 7 | 225 | 14 | 230 | 4.14e-83 | 252 |
| Msa0581370 | AT4G37800.1 | 53.488 | 215 | 97 | 2 | 14 | 225 | 15 | 229 | 1.06e-80 | 246 |
| Msa0581370 | AT4G03210.1 | 50.691 | 217 | 105 | 1 | 11 | 227 | 9 | 223 | 1.83e-80 | 245 |
| Msa0581370 | AT2G06850.1 | 53.913 | 230 | 91 | 2 | 31 | 245 | 35 | 264 | 1.83e-80 | 246 |
| Msa0581370 | AT2G14620.1 | 49.770 | 217 | 109 | 0 | 11 | 227 | 17 | 233 | 4.83e-77 | 237 |
| Msa0581370 | AT4G03210.2 | 60.694 | 173 | 65 | 1 | 53 | 225 | 24 | 193 | 3.65e-76 | 233 |
| Msa0581370 | AT1G11545.1 | 44.981 | 269 | 140 | 3 | 6 | 266 | 10 | 278 | 5.37e-76 | 234 |
| Msa0581370 | AT2G06850.2 | 56.219 | 201 | 73 | 2 | 61 | 246 | 5 | 205 | 3.15e-75 | 230 |
| Msa0581370 | AT4G13090.1 | 47.982 | 223 | 115 | 1 | 9 | 231 | 10 | 231 | 3.25e-70 | 219 |
| Msa0581370 | AT3G25050.1 | 51.562 | 192 | 90 | 2 | 31 | 222 | 35 | 223 | 9.30e-68 | 213 |
| Msa0581370 | AT4G13080.1 | 43.130 | 262 | 140 | 4 | 31 | 289 | 39 | 294 | 1.61e-67 | 213 |
| Msa0581370 | AT2G14620.2 | 56.627 | 166 | 72 | 0 | 62 | 227 | 18 | 183 | 2.58e-67 | 210 |
| Msa0581370 | AT2G14620.3 | 57.962 | 157 | 66 | 0 | 71 | 227 | 16 | 172 | 1.70e-65 | 205 |
| Msa0581370 | AT2G36870.1 | 44.828 | 203 | 99 | 5 | 30 | 224 | 42 | 239 | 3.53e-51 | 171 |
| Msa0581370 | AT3G44990.1 | 45.500 | 200 | 96 | 6 | 31 | 222 | 39 | 233 | 2.00e-50 | 168 |
| Msa0581370 | AT1G14720.1 | 39.450 | 218 | 117 | 4 | 16 | 219 | 7 | 223 | 3.41e-47 | 161 |
| Msa0581370 | AT2G01850.1 | 38.393 | 224 | 123 | 4 | 10 | 219 | 1 | 223 | 3.98e-47 | 161 |
| Msa0581370 | AT1G32170.1 | 36.087 | 230 | 141 | 3 | 4 | 228 | 5 | 233 | 8.71e-46 | 158 |
| Msa0581370 | AT1G10550.1 | 39.691 | 194 | 111 | 3 | 42 | 230 | 52 | 244 | 1.32e-43 | 151 |
| Msa0581370 | AT4G18990.1 | 37.438 | 203 | 121 | 3 | 39 | 236 | 48 | 249 | 2.98e-41 | 146 |
| Msa0581370 | AT3G48580.1 | 42.012 | 169 | 90 | 4 | 28 | 196 | 35 | 195 | 1.01e-36 | 132 |
| Msa0581370 | AT4G18990.2 | 40.741 | 135 | 77 | 2 | 104 | 236 | 42 | 175 | 2.50e-33 | 124 |
| Msa0581370 | AT2G36870.2 | 45.324 | 139 | 66 | 3 | 30 | 160 | 42 | 178 | 8.59e-33 | 119 |
| Msa0581370 | AT3G48580.3 | 42.647 | 136 | 75 | 2 | 61 | 196 | 4 | 136 | 2.17e-31 | 117 |
| Msa0581370 | AT3G48580.2 | 34.731 | 167 | 81 | 5 | 30 | 196 | 37 | 175 | 5.19e-20 | 87.8 |
Find 65 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTCCTCTTATCTCTAT+TGG | 0.164509 | 4_1:+86755172 | Msa0581370:CDS |
| CTTGACAAAGCCTCTGGTTC+TGG | 0.183053 | 4_1:+86755311 | Msa0581370:CDS |
| ATCCTCATTGGTTGATTCTT+TGG | 0.185511 | 4_1:-86755973 | None:intergenic |
| ATGTTCTTGAATTCTCTTAT+TGG | 0.197118 | 4_1:-86755928 | None:intergenic |
| CGAAATTGACTTTGAATTCT+TGG | 0.204236 | 4_1:+86755573 | Msa0581370:CDS |
| TTCACACCTACTCCATTCTT+TGG | 0.237903 | 4_1:+86755701 | Msa0581370:CDS |
| TGTCATCAAAAGGATCAAAT+TGG | 0.258251 | 4_1:+86755548 | Msa0581370:CDS |
| CTCCATTCACTGCATCTTAT+AGG | 0.269112 | 4_1:+86756067 | Msa0581370:CDS |
| GACCGCGGGCAGCATGAAAA+AGG | 0.277127 | 4_1:+86756900 | Msa0581370:intron |
| GAGAGCAACAATTCCATCTT+TGG | 0.288359 | 4_1:+86755659 | Msa0581370:CDS |
| GAAATTGACTTTGAATTCTT+GGG | 0.344493 | 4_1:+86755574 | Msa0581370:CDS |
| TGAGGATATACTCAAGTCTA+TGG | 0.355078 | 4_1:+86755989 | Msa0581370:CDS |
| CTTTCCCTTGACAAAGCCTC+TGG | 0.396483 | 4_1:+86755305 | Msa0581370:CDS |
| ACTTGTTGAATCCAACTCTT+GGG | 0.425232 | 4_1:-86756130 | None:intergenic |
| AGACTTGAGTATATCCTCAT+TGG | 0.432038 | 4_1:-86755985 | None:intergenic |
| GTCTATGGAATGCTGATGAT+TGG | 0.434923 | 4_1:+86756004 | Msa0581370:CDS |
| TTGACCGTTGTCGAGTATCT+TGG | 0.435436 | 4_1:-86755273 | None:intergenic |
| GACTTGTTGAATCCAACTCT+TGG | 0.435704 | 4_1:-86756131 | None:intergenic |
| GTCATCAAAAGGATCAAATT+GGG | 0.453646 | 4_1:+86755549 | Msa0581370:CDS |
| ACAGTGCCTGCAGAGTTTCC+AGG | 0.474176 | 4_1:-86755392 | None:intergenic |
| GTATGCCATGGTTGATTTGA+AGG | 0.476513 | 4_1:-86755129 | None:intergenic |
| ATGCAGCTCAAGCTTGTACC+TGG | 0.480284 | 4_1:+86755374 | Msa0581370:CDS |
| ACGTTACATTTCAGCTCAGC+CGG | 0.484755 | 4_1:-86757006 | None:intergenic |
| TTCAAGAACATGGAATCAAA+AGG | 0.493604 | 4_1:+86755940 | Msa0581370:CDS |
| CAGTTGGATCAAACCAAAGA+TGG | 0.493971 | 4_1:-86755672 | None:intergenic |
| GGCATGCAGTTGTCATCAAA+AGG | 0.496860 | 4_1:+86755538 | Msa0581370:intron |
| TTCCTATAAGATGCAGTGAA+TGG | 0.501342 | 4_1:-86756069 | None:intergenic |
| GCGGTCTTGTCAAGACAGAT+TGG | 0.512024 | 4_1:+86756037 | Msa0581370:CDS |
| TTCATTACAACATATGCAGC+AGG | 0.518113 | 4_1:+86755206 | Msa0581370:CDS |
| AATGTGTTTAGTCAAGGAAA+AGG | 0.525149 | 4_1:+86755631 | Msa0581370:CDS |
| ATCAGAACTTTGATATAACA+TGG | 0.536100 | 4_1:+86755237 | Msa0581370:CDS |
| TCTATGGAATGCTGATGATT+GGG | 0.538637 | 4_1:+86756005 | Msa0581370:CDS |
| CTTGTACCTGGAAACTCTGC+AGG | 0.539694 | 4_1:+86755386 | Msa0581370:CDS |
| GCGTTGAGGATTCCAAAGAA+TGG | 0.542490 | 4_1:-86755713 | None:intergenic |
| CACACCAATGTGTTTAGTCA+AGG | 0.543031 | 4_1:+86755625 | Msa0581370:CDS |
| AAATTGACTTTGAATTCTTG+GGG | 0.553955 | 4_1:+86755575 | Msa0581370:CDS |
| ACATTGGTGTGAAGAGTGTA+TGG | 0.556406 | 4_1:-86755613 | None:intergenic |
| CGTTACATTTCAGCTCAGCC+GGG | 0.564269 | 4_1:-86757005 | None:intergenic |
| GTGTGTGTATATATATAGCT+TGG | 0.570622 | 4_1:-86755107 | None:intergenic |
| TTTGATATAACATGGGGAGA+TGG | 0.571234 | 4_1:+86755245 | Msa0581370:CDS |
| AAACTACTTCATCTAATGCA+TGG | 0.572457 | 4_1:+86756103 | Msa0581370:CDS |
| CAACAGAATTGCAGCGTGTG+TGG | 0.585332 | 4_1:+86756971 | Msa0581370:CDS |
| AGGATTCCAAAGAATGGAGT+AGG | 0.588075 | 4_1:-86755707 | None:intergenic |
| CAGAACCAGAGGCTTTGTCA+AGG | 0.594126 | 4_1:-86755310 | None:intergenic |
| TCAGAACTTTGATATAACAT+GGG | 0.603368 | 4_1:+86755238 | Msa0581370:CDS |
| TGCATATGTTGTAATGAAAG+TGG | 0.604062 | 4_1:-86755201 | None:intergenic |
| TAGGTGTGAAAATCAGCAGT+TGG | 0.604383 | 4_1:-86755688 | None:intergenic |
| ATACATAATACAGCGGGTCG+AGG | 0.606071 | 4_1:+86756942 | Msa0581370:CDS |
| AATAAGAGAATTCAAGAACA+TGG | 0.612760 | 4_1:+86755930 | Msa0581370:CDS |
| GAATTCTTGGGGAATGTGAG+TGG | 0.614591 | 4_1:+86755586 | Msa0581370:CDS |
| GGACACATACATAATACAGC+GGG | 0.616998 | 4_1:+86756936 | Msa0581370:CDS |
| TGTGTGGACTAAACTTGTCC+CGG | 0.618277 | 4_1:+86756987 | Msa0581370:CDS |
| AGAACCAGAGGCTTTGTCAA+GGG | 0.619883 | 4_1:-86755309 | None:intergenic |
| GATGATTGGGCAACAAGAGG+CGG | 0.625561 | 4_1:+86756018 | Msa0581370:CDS |
| GCTGATGATTGGGCAACAAG+AGG | 0.626727 | 4_1:+86756015 | Msa0581370:CDS |
| GGTGCTTACACAATGCGTTG+AGG | 0.644219 | 4_1:-86755727 | None:intergenic |
| TTCCAAAGAATCAACCAATG+AGG | 0.645428 | 4_1:+86755971 | Msa0581370:CDS |
| GGATTGAAATCCAGAACCAG+AGG | 0.649236 | 4_1:-86755321 | None:intergenic |
| GGTCTGGTATAGCAGACCGC+GGG | 0.649301 | 4_1:+86756886 | Msa0581370:intron |
| AAGTCAACAAAGATTGAGTG+AGG | 0.654429 | 4_1:+86756149 | Msa0581370:CDS |
| CAGAACTTTGATATAACATG+GGG | 0.655512 | 4_1:+86755239 | Msa0581370:CDS |
| ACACACCTTCAAATCAACCA+TGG | 0.688364 | 4_1:+86755124 | Msa0581370:exon |
| AGGACACATACATAATACAG+CGG | 0.737921 | 4_1:+86756935 | Msa0581370:CDS |
| GCAATTATGAGTGTATGCCA+TGG | 0.758165 | 4_1:-86755141 | None:intergenic |
| CGTGCCAAGATACTCGACAA+CGG | 0.804801 | 4_1:+86755269 | Msa0581370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTAAAAATACTCAAT+TGG | + | chr4_1:86755840-86755859 | Msa0581370:intron | 10.0% |
| !! | TGCAAAAAAAAAAAAAAATA+CGG | + | chr4_1:86756501-86756520 | Msa0581370:intron | 10.0% |
| !! | TAAATTTAAAAATACTCAAT+TGG | + | chr4_1:86755840-86755859 | Msa0581370:intron | 10.0% |
| !! | TGCAAAAAAAAAAAAAAATA+CGG | + | chr4_1:86756501-86756520 | Msa0581370:intron | 10.0% |
| !!! | TGTGTTAATTATTTTTACTA+TGG | + | chr4_1:86755517-86755536 | Msa0581370:intron | 15.0% |
| !! | GGAATATAGAATTATTAATT+AGG | - | chr4_1:86756256-86756275 | None:intergenic | 15.0% |
| !! | ACAAGTAAAATAAATTGAAT+AGG | - | chr4_1:86756318-86756337 | None:intergenic | 15.0% |
| !!! | TGTGTTAATTATTTTTACTA+TGG | + | chr4_1:86755517-86755536 | Msa0581370:intron | 15.0% |
| !! | GGAATATAGAATTATTAATT+AGG | - | chr4_1:86756256-86756275 | None:intergenic | 15.0% |
| !! | ACAAGTAAAATAAATTGAAT+AGG | - | chr4_1:86756318-86756337 | None:intergenic | 15.0% |
| !! | TATGAGTATGATATTTGAAA+AGG | - | chr4_1:86755751-86755770 | None:intergenic | 20.0% |
| !! | AATTCTATATCTATCAAACA+CGG | - | chr4_1:86755817-86755836 | None:intergenic | 20.0% |
| !! | TCATCAATAATCAATTCATT+GGG | - | chr4_1:86755867-86755886 | None:intergenic | 20.0% |
| !! | TTCATCAATAATCAATTCAT+TGG | - | chr4_1:86755868-86755887 | None:intergenic | 20.0% |
| !! | TTGTAGATTTATTCTTTCTT+AGG | + | chr4_1:86756292-86756311 | Msa0581370:intron | 20.0% |
| !!! | ATAAGAGTTAAGTTTTATTC+TGG | + | chr4_1:86756546-86756565 | Msa0581370:intron | 20.0% |
| !! | TTGCATTTACAATATTTAGT+AGG | + | chr4_1:86756735-86756754 | Msa0581370:intron | 20.0% |
| !! | TATGAGTATGATATTTGAAA+AGG | - | chr4_1:86755751-86755770 | None:intergenic | 20.0% |
| !! | AATTCTATATCTATCAAACA+CGG | - | chr4_1:86755817-86755836 | None:intergenic | 20.0% |
| !! | TCATCAATAATCAATTCATT+GGG | - | chr4_1:86755867-86755886 | None:intergenic | 20.0% |
| !! | TTCATCAATAATCAATTCAT+TGG | - | chr4_1:86755868-86755887 | None:intergenic | 20.0% |
| !! | TTGTAGATTTATTCTTTCTT+AGG | + | chr4_1:86756292-86756311 | Msa0581370:intron | 20.0% |
| !!! | ATAAGAGTTAAGTTTTATTC+TGG | + | chr4_1:86756546-86756565 | Msa0581370:intron | 20.0% |
| !! | TTGCATTTACAATATTTAGT+AGG | + | chr4_1:86756735-86756754 | Msa0581370:intron | 20.0% |
| ! | ATCAGAACTTTGATATAACA+TGG | + | chr4_1:86755237-86755256 | Msa0581370:CDS | 25.0% |
| ! | TCAGAACTTTGATATAACAT+GGG | + | chr4_1:86755238-86755257 | Msa0581370:CDS | 25.0% |
| !! | TCCAAGAATGAATATCTTTT+TGG | + | chr4_1:86755341-86755360 | Msa0581370:CDS | 25.0% |
| !! | GAAAGTACAAATTATACTGT+AGG | - | chr4_1:86755472-86755491 | None:intergenic | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+GGG | + | chr4_1:86755574-86755593 | Msa0581370:CDS | 25.0% |
| !! | AAATTGACTTTGAATTCTTG+GGG | + | chr4_1:86755575-86755594 | Msa0581370:CDS | 25.0% |
| ! | TATCATACTCATAAAATCAC+CGG | + | chr4_1:86755758-86755777 | Msa0581370:intron | 25.0% |
| ! | ATGTTCTTGAATTCTCTTAT+TGG | - | chr4_1:86755931-86755950 | None:intergenic | 25.0% |
| ! | AATAAGAGAATTCAAGAACA+TGG | + | chr4_1:86755930-86755949 | Msa0581370:CDS | 25.0% |
| ! | TACAACTATATAGTTGCTAT+TGG | - | chr4_1:86756277-86756296 | None:intergenic | 25.0% |
| ! | TCAGCAAATTATATTAAGCT+TGG | - | chr4_1:86756407-86756426 | None:intergenic | 25.0% |
| ! | TTAAAATGTCAAGACCTATT+GGG | - | chr4_1:86756478-86756497 | None:intergenic | 25.0% |
| !! | TTTAAAATGTCAAGACCTAT+TGG | - | chr4_1:86756479-86756498 | None:intergenic | 25.0% |
| ! | CAAATTCAGTGATTATTACA+TGG | + | chr4_1:86756690-86756709 | Msa0581370:intron | 25.0% |
| !! | GTTTTTATGATATTTTGCGA+GGG | - | chr4_1:86756802-86756821 | None:intergenic | 25.0% |
| ! | AATATCATAAAAACCCAGTA+TGG | + | chr4_1:86756808-86756827 | Msa0581370:intron | 25.0% |
| ! | ATCAGAACTTTGATATAACA+TGG | + | chr4_1:86755237-86755256 | Msa0581370:CDS | 25.0% |
| ! | TCAGAACTTTGATATAACAT+GGG | + | chr4_1:86755238-86755257 | Msa0581370:CDS | 25.0% |
| !! | TCCAAGAATGAATATCTTTT+TGG | + | chr4_1:86755341-86755360 | Msa0581370:CDS | 25.0% |
| !! | GAAAGTACAAATTATACTGT+AGG | - | chr4_1:86755472-86755491 | None:intergenic | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+GGG | + | chr4_1:86755574-86755593 | Msa0581370:CDS | 25.0% |
| !! | AAATTGACTTTGAATTCTTG+GGG | + | chr4_1:86755575-86755594 | Msa0581370:CDS | 25.0% |
| ! | TATCATACTCATAAAATCAC+CGG | + | chr4_1:86755758-86755777 | Msa0581370:intron | 25.0% |
| ! | ATGTTCTTGAATTCTCTTAT+TGG | - | chr4_1:86755931-86755950 | None:intergenic | 25.0% |
| ! | AATAAGAGAATTCAAGAACA+TGG | + | chr4_1:86755930-86755949 | Msa0581370:CDS | 25.0% |
| ! | TACAACTATATAGTTGCTAT+TGG | - | chr4_1:86756277-86756296 | None:intergenic | 25.0% |
| ! | TCAGCAAATTATATTAAGCT+TGG | - | chr4_1:86756407-86756426 | None:intergenic | 25.0% |
| ! | TTAAAATGTCAAGACCTATT+GGG | - | chr4_1:86756478-86756497 | None:intergenic | 25.0% |
| !! | TTTAAAATGTCAAGACCTAT+TGG | - | chr4_1:86756479-86756498 | None:intergenic | 25.0% |
| ! | CAAATTCAGTGATTATTACA+TGG | + | chr4_1:86756690-86756709 | Msa0581370:intron | 25.0% |
| !! | GTTTTTATGATATTTTGCGA+GGG | - | chr4_1:86756802-86756821 | None:intergenic | 25.0% |
| ! | AATATCATAAAAACCCAGTA+TGG | + | chr4_1:86756808-86756827 | Msa0581370:intron | 25.0% |
| GTGTGTGTATATATATAGCT+TGG | - | chr4_1:86755110-86755129 | None:intergenic | 30.0% | |
| CAAAAACCAATAGAGATAAG+AGG | - | chr4_1:86755181-86755200 | None:intergenic | 30.0% | |
| TGCATATGTTGTAATGAAAG+TGG | - | chr4_1:86755204-86755223 | None:intergenic | 30.0% | |
| CAGAACTTTGATATAACATG+GGG | + | chr4_1:86755239-86755258 | Msa0581370:CDS | 30.0% | |
| GCCAAAAAGATATTCATTCT+TGG | - | chr4_1:86755345-86755364 | None:intergenic | 30.0% | |
| ! | ATACTGTAGGATTAGCATTA+AGG | - | chr4_1:86755459-86755478 | None:intergenic | 30.0% |
| TGTCATCAAAAGGATCAAAT+TGG | + | chr4_1:86755548-86755567 | Msa0581370:CDS | 30.0% | |
| GTCATCAAAAGGATCAAATT+GGG | + | chr4_1:86755549-86755568 | Msa0581370:CDS | 30.0% | |
| ! | CGAAATTGACTTTGAATTCT+TGG | + | chr4_1:86755573-86755592 | Msa0581370:CDS | 30.0% |
| ! | TTTTCCTTGACTAAACACAT+TGG | - | chr4_1:86755632-86755651 | None:intergenic | 30.0% |
| AATGTGTTTAGTCAAGGAAA+AGG | + | chr4_1:86755631-86755650 | Msa0581370:CDS | 30.0% | |
| ! | AATTGAATGCAGTTTTTCTG+TGG | + | chr4_1:86755897-86755916 | Msa0581370:intron | 30.0% |
| TTCAAGAACATGGAATCAAA+AGG | + | chr4_1:86755940-86755959 | Msa0581370:CDS | 30.0% | |
| AAACTACTTCATCTAATGCA+TGG | + | chr4_1:86756103-86756122 | Msa0581370:CDS | 30.0% | |
| ! | ATATGTCAATTTTGCCCAAT+AGG | + | chr4_1:86756461-86756480 | Msa0581370:intron | 30.0% |
| !!! | CCGATTTTCTTTTTTGGTAA+GGG | - | chr4_1:86756639-86756658 | None:intergenic | 30.0% |
| CCCTTACCAAAAAAGAAAAT+CGG | + | chr4_1:86756636-86756655 | Msa0581370:intron | 30.0% | |
| !!! | TCCGATTTTCTTTTTTGGTA+AGG | - | chr4_1:86756640-86756659 | None:intergenic | 30.0% |
| ! | ACTGTTCCGATTTTCTTTTT+TGG | - | chr4_1:86756645-86756664 | None:intergenic | 30.0% |
| TCGCACTGTAAAAAAATGAA+AGG | + | chr4_1:86756766-86756785 | Msa0581370:intron | 30.0% | |
| ! | GGTTTTTATGATATTTTGCG+AGG | - | chr4_1:86756803-86756822 | None:intergenic | 30.0% |
| GTGTGTGTATATATATAGCT+TGG | - | chr4_1:86755110-86755129 | None:intergenic | 30.0% | |
| CAAAAACCAATAGAGATAAG+AGG | - | chr4_1:86755181-86755200 | None:intergenic | 30.0% | |
| TGCATATGTTGTAATGAAAG+TGG | - | chr4_1:86755204-86755223 | None:intergenic | 30.0% | |
| CAGAACTTTGATATAACATG+GGG | + | chr4_1:86755239-86755258 | Msa0581370:CDS | 30.0% | |
| GCCAAAAAGATATTCATTCT+TGG | - | chr4_1:86755345-86755364 | None:intergenic | 30.0% | |
| ! | ATACTGTAGGATTAGCATTA+AGG | - | chr4_1:86755459-86755478 | None:intergenic | 30.0% |
| TGTCATCAAAAGGATCAAAT+TGG | + | chr4_1:86755548-86755567 | Msa0581370:CDS | 30.0% | |
| GTCATCAAAAGGATCAAATT+GGG | + | chr4_1:86755549-86755568 | Msa0581370:CDS | 30.0% | |
| ! | CGAAATTGACTTTGAATTCT+TGG | + | chr4_1:86755573-86755592 | Msa0581370:CDS | 30.0% |
| ! | TTTTCCTTGACTAAACACAT+TGG | - | chr4_1:86755632-86755651 | None:intergenic | 30.0% |
| AATGTGTTTAGTCAAGGAAA+AGG | + | chr4_1:86755631-86755650 | Msa0581370:CDS | 30.0% | |
| ! | AATTGAATGCAGTTTTTCTG+TGG | + | chr4_1:86755897-86755916 | Msa0581370:intron | 30.0% |
| TTCAAGAACATGGAATCAAA+AGG | + | chr4_1:86755940-86755959 | Msa0581370:CDS | 30.0% | |
| AAACTACTTCATCTAATGCA+TGG | + | chr4_1:86756103-86756122 | Msa0581370:CDS | 30.0% | |
| ! | ATATGTCAATTTTGCCCAAT+AGG | + | chr4_1:86756461-86756480 | Msa0581370:intron | 30.0% |
| !!! | CCGATTTTCTTTTTTGGTAA+GGG | - | chr4_1:86756639-86756658 | None:intergenic | 30.0% |
| CCCTTACCAAAAAAGAAAAT+CGG | + | chr4_1:86756636-86756655 | Msa0581370:intron | 30.0% | |
| !!! | TCCGATTTTCTTTTTTGGTA+AGG | - | chr4_1:86756640-86756659 | None:intergenic | 30.0% |
| ! | ACTGTTCCGATTTTCTTTTT+TGG | - | chr4_1:86756645-86756664 | None:intergenic | 30.0% |
| TCGCACTGTAAAAAAATGAA+AGG | + | chr4_1:86756766-86756785 | Msa0581370:intron | 30.0% | |
| ! | GGTTTTTATGATATTTTGCG+AGG | - | chr4_1:86756803-86756822 | None:intergenic | 30.0% |
| TTCATTACAACATATGCAGC+AGG | + | chr4_1:86755206-86755225 | Msa0581370:CDS | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr4_1:86755245-86755264 | Msa0581370:CDS | 35.0% | |
| TTCCAAAGAATCAACCAATG+AGG | + | chr4_1:86755971-86755990 | Msa0581370:CDS | 35.0% | |
| ! | ATCCTCATTGGTTGATTCTT+TGG | - | chr4_1:86755976-86755995 | None:intergenic | 35.0% |
| AGACTTGAGTATATCCTCAT+TGG | - | chr4_1:86755988-86756007 | None:intergenic | 35.0% | |
| TGAGGATATACTCAAGTCTA+TGG | + | chr4_1:86755989-86756008 | Msa0581370:CDS | 35.0% | |
| TCTATGGAATGCTGATGATT+GGG | + | chr4_1:86756005-86756024 | Msa0581370:CDS | 35.0% | |
| TTCCTATAAGATGCAGTGAA+TGG | - | chr4_1:86756072-86756091 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAATCCAACTCTT+GGG | - | chr4_1:86756133-86756152 | None:intergenic | 35.0% |
| AAGTCAACAAAGATTGAGTG+AGG | + | chr4_1:86756149-86756168 | Msa0581370:CDS | 35.0% | |
| AGCTAGTCCCTCATAAAAAA+AGG | + | chr4_1:86756593-86756612 | Msa0581370:intron | 35.0% | |
| GCTAGTCCCTCATAAAAAAA+GGG | + | chr4_1:86756594-86756613 | Msa0581370:intron | 35.0% | |
| CTAGTCCCTCATAAAAAAAG+GGG | + | chr4_1:86756595-86756614 | Msa0581370:intron | 35.0% | |
| TAGTCCCTCATAAAAAAAGG+GGG | + | chr4_1:86756596-86756615 | Msa0581370:intron | 35.0% | |
| TAGTGAAACAAAGACCAGTT+TGG | + | chr4_1:86756852-86756871 | Msa0581370:intron | 35.0% | |
| !! | ACCAGTTTGGTCTTAAAAAC+CGG | + | chr4_1:86756865-86756884 | Msa0581370:intron | 35.0% |
| AGGACACATACATAATACAG+CGG | + | chr4_1:86756935-86756954 | Msa0581370:CDS | 35.0% | |
| TTCATTACAACATATGCAGC+AGG | + | chr4_1:86755206-86755225 | Msa0581370:CDS | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr4_1:86755245-86755264 | Msa0581370:CDS | 35.0% | |
| TTCCAAAGAATCAACCAATG+AGG | + | chr4_1:86755971-86755990 | Msa0581370:CDS | 35.0% | |
| ! | ATCCTCATTGGTTGATTCTT+TGG | - | chr4_1:86755976-86755995 | None:intergenic | 35.0% |
| AGACTTGAGTATATCCTCAT+TGG | - | chr4_1:86755988-86756007 | None:intergenic | 35.0% | |
| TGAGGATATACTCAAGTCTA+TGG | + | chr4_1:86755989-86756008 | Msa0581370:CDS | 35.0% | |
| TCTATGGAATGCTGATGATT+GGG | + | chr4_1:86756005-86756024 | Msa0581370:CDS | 35.0% | |
| TTCCTATAAGATGCAGTGAA+TGG | - | chr4_1:86756072-86756091 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAATCCAACTCTT+GGG | - | chr4_1:86756133-86756152 | None:intergenic | 35.0% |
| AAGTCAACAAAGATTGAGTG+AGG | + | chr4_1:86756149-86756168 | Msa0581370:CDS | 35.0% | |
| AGCTAGTCCCTCATAAAAAA+AGG | + | chr4_1:86756593-86756612 | Msa0581370:intron | 35.0% | |
| GCTAGTCCCTCATAAAAAAA+GGG | + | chr4_1:86756594-86756613 | Msa0581370:intron | 35.0% | |
| CTAGTCCCTCATAAAAAAAG+GGG | + | chr4_1:86756595-86756614 | Msa0581370:intron | 35.0% | |
| TAGTCCCTCATAAAAAAAGG+GGG | + | chr4_1:86756596-86756615 | Msa0581370:intron | 35.0% | |
| TAGTGAAACAAAGACCAGTT+TGG | + | chr4_1:86756852-86756871 | Msa0581370:intron | 35.0% | |
| !! | ACCAGTTTGGTCTTAAAAAC+CGG | + | chr4_1:86756865-86756884 | Msa0581370:intron | 35.0% |
| AGGACACATACATAATACAG+CGG | + | chr4_1:86756935-86756954 | Msa0581370:CDS | 35.0% | |
| ACACACCTTCAAATCAACCA+TGG | + | chr4_1:86755124-86755143 | Msa0581370:exon | 40.0% | |
| !! | GTATGCCATGGTTGATTTGA+AGG | - | chr4_1:86755132-86755151 | None:intergenic | 40.0% |
| GCAATTATGAGTGTATGCCA+TGG | - | chr4_1:86755144-86755163 | None:intergenic | 40.0% | |
| CACTGTCCTCTTATCTCTAT+TGG | + | chr4_1:86755172-86755191 | Msa0581370:CDS | 40.0% | |
| ! | ACATTGGTGTGAAGAGTGTA+TGG | - | chr4_1:86755616-86755635 | None:intergenic | 40.0% |
| CACACCAATGTGTTTAGTCA+AGG | + | chr4_1:86755625-86755644 | Msa0581370:CDS | 40.0% | |
| GAGAGCAACAATTCCATCTT+TGG | + | chr4_1:86755659-86755678 | Msa0581370:CDS | 40.0% | |
| CAGTTGGATCAAACCAAAGA+TGG | - | chr4_1:86755675-86755694 | None:intergenic | 40.0% | |
| TAGGTGTGAAAATCAGCAGT+TGG | - | chr4_1:86755691-86755710 | None:intergenic | 40.0% | |
| TTCACACCTACTCCATTCTT+TGG | + | chr4_1:86755701-86755720 | Msa0581370:CDS | 40.0% | |
| AGGATTCCAAAGAATGGAGT+AGG | - | chr4_1:86755710-86755729 | None:intergenic | 40.0% | |
| ATTAGTGTCAGTATCGTGTC+CGG | - | chr4_1:86755780-86755799 | None:intergenic | 40.0% | |
| ! | GAATGCAGTTTTTCTGTGGA+TGG | + | chr4_1:86755901-86755920 | Msa0581370:intron | 40.0% |
| GTCTATGGAATGCTGATGAT+TGG | + | chr4_1:86756004-86756023 | Msa0581370:CDS | 40.0% | |
| CTCCATTCACTGCATCTTAT+AGG | + | chr4_1:86756067-86756086 | Msa0581370:CDS | 40.0% | |
| !! | GACTTGTTGAATCCAACTCT+TGG | - | chr4_1:86756134-86756153 | None:intergenic | 40.0% |
| AGTCCCTCATAAAAAAAGGG+GGG | + | chr4_1:86756597-86756616 | Msa0581370:intron | 40.0% | |
| !!! | TTCCCCCCCTTTTTTTATGA+GGG | - | chr4_1:86756603-86756622 | None:intergenic | 40.0% |
| ! | CTTTGTTTCACTATCGAAGG+TGG | - | chr4_1:86756845-86756864 | None:intergenic | 40.0% |
| ! | GGTCTTTGTTTCACTATCGA+AGG | - | chr4_1:86756848-86756867 | None:intergenic | 40.0% |
| !!! | ACCGGTTTTTAAGACCAAAC+TGG | - | chr4_1:86756869-86756888 | None:intergenic | 40.0% |
| !! | TTTGGTCTTAAAAACCGGTC+TGG | + | chr4_1:86756870-86756889 | Msa0581370:intron | 40.0% |
| GGACACATACATAATACAGC+GGG | + | chr4_1:86756936-86756955 | Msa0581370:CDS | 40.0% | |
| ACACACCTTCAAATCAACCA+TGG | + | chr4_1:86755124-86755143 | Msa0581370:exon | 40.0% | |
| !! | GTATGCCATGGTTGATTTGA+AGG | - | chr4_1:86755132-86755151 | None:intergenic | 40.0% |
| GCAATTATGAGTGTATGCCA+TGG | - | chr4_1:86755144-86755163 | None:intergenic | 40.0% | |
| CACTGTCCTCTTATCTCTAT+TGG | + | chr4_1:86755172-86755191 | Msa0581370:CDS | 40.0% | |
| ! | ACATTGGTGTGAAGAGTGTA+TGG | - | chr4_1:86755616-86755635 | None:intergenic | 40.0% |
| CACACCAATGTGTTTAGTCA+AGG | + | chr4_1:86755625-86755644 | Msa0581370:CDS | 40.0% | |
| GAGAGCAACAATTCCATCTT+TGG | + | chr4_1:86755659-86755678 | Msa0581370:CDS | 40.0% | |
| CAGTTGGATCAAACCAAAGA+TGG | - | chr4_1:86755675-86755694 | None:intergenic | 40.0% | |
| TAGGTGTGAAAATCAGCAGT+TGG | - | chr4_1:86755691-86755710 | None:intergenic | 40.0% | |
| TTCACACCTACTCCATTCTT+TGG | + | chr4_1:86755701-86755720 | Msa0581370:CDS | 40.0% | |
| AGGATTCCAAAGAATGGAGT+AGG | - | chr4_1:86755710-86755729 | None:intergenic | 40.0% | |
| ATTAGTGTCAGTATCGTGTC+CGG | - | chr4_1:86755780-86755799 | None:intergenic | 40.0% | |
| ! | GAATGCAGTTTTTCTGTGGA+TGG | + | chr4_1:86755901-86755920 | Msa0581370:intron | 40.0% |
| GTCTATGGAATGCTGATGAT+TGG | + | chr4_1:86756004-86756023 | Msa0581370:CDS | 40.0% | |
| CTCCATTCACTGCATCTTAT+AGG | + | chr4_1:86756067-86756086 | Msa0581370:CDS | 40.0% | |
| !! | GACTTGTTGAATCCAACTCT+TGG | - | chr4_1:86756134-86756153 | None:intergenic | 40.0% |
| AGTCCCTCATAAAAAAAGGG+GGG | + | chr4_1:86756597-86756616 | Msa0581370:intron | 40.0% | |
| !!! | TTCCCCCCCTTTTTTTATGA+GGG | - | chr4_1:86756603-86756622 | None:intergenic | 40.0% |
| ! | CTTTGTTTCACTATCGAAGG+TGG | - | chr4_1:86756845-86756864 | None:intergenic | 40.0% |
| ! | GGTCTTTGTTTCACTATCGA+AGG | - | chr4_1:86756848-86756867 | None:intergenic | 40.0% |
| !!! | ACCGGTTTTTAAGACCAAAC+TGG | - | chr4_1:86756869-86756888 | None:intergenic | 40.0% |
| !! | TTTGGTCTTAAAAACCGGTC+TGG | + | chr4_1:86756870-86756889 | Msa0581370:intron | 40.0% |
| GGACACATACATAATACAGC+GGG | + | chr4_1:86756936-86756955 | Msa0581370:CDS | 40.0% | |
| TTGACCGTTGTCGAGTATCT+TGG | - | chr4_1:86755276-86755295 | None:intergenic | 45.0% | |
| ! | AGAACCAGAGGCTTTGTCAA+GGG | - | chr4_1:86755312-86755331 | None:intergenic | 45.0% |
| GGATTGAAATCCAGAACCAG+AGG | - | chr4_1:86755324-86755343 | None:intergenic | 45.0% | |
| GGCATGCAGTTGTCATCAAA+AGG | + | chr4_1:86755538-86755557 | Msa0581370:intron | 45.0% | |
| GAATTCTTGGGGAATGTGAG+TGG | + | chr4_1:86755586-86755605 | Msa0581370:CDS | 45.0% | |
| GCGTTGAGGATTCCAAAGAA+TGG | - | chr4_1:86755716-86755735 | None:intergenic | 45.0% | |
| ! | TGCATGGTTTTCCCAAGAGT+TGG | + | chr4_1:86756119-86756138 | Msa0581370:CDS | 45.0% |
| GACCTCAAAAGATTTCCCCA+AGG | + | chr4_1:86756207-86756226 | Msa0581370:intron | 45.0% | |
| ATGCAGTGCACTCTATTGGA+AGG | - | chr4_1:86756233-86756252 | None:intergenic | 45.0% | |
| TAGGATGCAGTGCACTCTAT+TGG | - | chr4_1:86756237-86756256 | None:intergenic | 45.0% | |
| GTCCCTCATAAAAAAAGGGG+GGG | + | chr4_1:86756598-86756617 | Msa0581370:intron | 45.0% | |
| !!! | GTTCCCCCCCTTTTTTTATG+AGG | - | chr4_1:86756604-86756623 | None:intergenic | 45.0% |
| CTATCGAAGGTGGATCAAGA+GGG | - | chr4_1:86756835-86756854 | None:intergenic | 45.0% | |
| ACTATCGAAGGTGGATCAAG+AGG | - | chr4_1:86756836-86756855 | None:intergenic | 45.0% | |
| ATACATAATACAGCGGGTCG+AGG | + | chr4_1:86756942-86756961 | Msa0581370:CDS | 45.0% | |
| ! | TGTGTGGACTAAACTTGTCC+CGG | + | chr4_1:86756987-86757006 | Msa0581370:CDS | 45.0% |
| ACGTTACATTTCAGCTCAGC+CGG | - | chr4_1:86757009-86757028 | None:intergenic | 45.0% | |
| TTGACCGTTGTCGAGTATCT+TGG | - | chr4_1:86755276-86755295 | None:intergenic | 45.0% | |
| ! | AGAACCAGAGGCTTTGTCAA+GGG | - | chr4_1:86755312-86755331 | None:intergenic | 45.0% |
| GGATTGAAATCCAGAACCAG+AGG | - | chr4_1:86755324-86755343 | None:intergenic | 45.0% | |
| GGCATGCAGTTGTCATCAAA+AGG | + | chr4_1:86755538-86755557 | Msa0581370:intron | 45.0% | |
| GAATTCTTGGGGAATGTGAG+TGG | + | chr4_1:86755586-86755605 | Msa0581370:CDS | 45.0% | |
| GCGTTGAGGATTCCAAAGAA+TGG | - | chr4_1:86755716-86755735 | None:intergenic | 45.0% | |
| ! | TGCATGGTTTTCCCAAGAGT+TGG | + | chr4_1:86756119-86756138 | Msa0581370:CDS | 45.0% |
| GACCTCAAAAGATTTCCCCA+AGG | + | chr4_1:86756207-86756226 | Msa0581370:intron | 45.0% | |
| ATGCAGTGCACTCTATTGGA+AGG | - | chr4_1:86756233-86756252 | None:intergenic | 45.0% | |
| TAGGATGCAGTGCACTCTAT+TGG | - | chr4_1:86756237-86756256 | None:intergenic | 45.0% | |
| GTCCCTCATAAAAAAAGGGG+GGG | + | chr4_1:86756598-86756617 | Msa0581370:intron | 45.0% | |
| !!! | GTTCCCCCCCTTTTTTTATG+AGG | - | chr4_1:86756604-86756623 | None:intergenic | 45.0% |
| CTATCGAAGGTGGATCAAGA+GGG | - | chr4_1:86756835-86756854 | None:intergenic | 45.0% | |
| ACTATCGAAGGTGGATCAAG+AGG | - | chr4_1:86756836-86756855 | None:intergenic | 45.0% | |
| ATACATAATACAGCGGGTCG+AGG | + | chr4_1:86756942-86756961 | Msa0581370:CDS | 45.0% | |
| ! | TGTGTGGACTAAACTTGTCC+CGG | + | chr4_1:86756987-86757006 | Msa0581370:CDS | 45.0% |
| ACGTTACATTTCAGCTCAGC+CGG | - | chr4_1:86757009-86757028 | None:intergenic | 45.0% | |
| CGTGCCAAGATACTCGACAA+CGG | + | chr4_1:86755269-86755288 | Msa0581370:CDS | 50.0% | |
| CTTTCCCTTGACAAAGCCTC+TGG | + | chr4_1:86755305-86755324 | Msa0581370:CDS | 50.0% | |
| ! | CAGAACCAGAGGCTTTGTCA+AGG | - | chr4_1:86755313-86755332 | None:intergenic | 50.0% |
| ! | CTTGACAAAGCCTCTGGTTC+TGG | + | chr4_1:86755311-86755330 | Msa0581370:CDS | 50.0% |
| ATGCAGCTCAAGCTTGTACC+TGG | + | chr4_1:86755374-86755393 | Msa0581370:CDS | 50.0% | |
| CTTGTACCTGGAAACTCTGC+AGG | + | chr4_1:86755386-86755405 | Msa0581370:CDS | 50.0% | |
| GGTGCTTACACAATGCGTTG+AGG | - | chr4_1:86755730-86755749 | None:intergenic | 50.0% | |
| GCTGATGATTGGGCAACAAG+AGG | + | chr4_1:86756015-86756034 | Msa0581370:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+CGG | + | chr4_1:86756018-86756037 | Msa0581370:CDS | 50.0% | |
| ! | GCGGTCTTGTCAAGACAGAT+TGG | + | chr4_1:86756037-86756056 | Msa0581370:CDS | 50.0% |
| ! | GGCCTTGGGGAAATCTTTTG+AGG | - | chr4_1:86756212-86756231 | None:intergenic | 50.0% |
| CACTCTATTGGAAGGCCTTG+GGG | - | chr4_1:86756225-86756244 | None:intergenic | 50.0% | |
| GCACTCTATTGGAAGGCCTT+GGG | - | chr4_1:86756226-86756245 | None:intergenic | 50.0% | |
| TGCACTCTATTGGAAGGCCT+TGG | - | chr4_1:86756227-86756246 | None:intergenic | 50.0% | |
| GGATCAAGAGGGACCATACT+GGG | - | chr4_1:86756824-86756843 | None:intergenic | 50.0% | |
| TGGATCAAGAGGGACCATAC+TGG | - | chr4_1:86756825-86756844 | None:intergenic | 50.0% | |
| CAACAGAATTGCAGCGTGTG+TGG | + | chr4_1:86756971-86756990 | Msa0581370:CDS | 50.0% | |
| CGTTACATTTCAGCTCAGCC+GGG | - | chr4_1:86757008-86757027 | None:intergenic | 50.0% | |
| CGTGCCAAGATACTCGACAA+CGG | + | chr4_1:86755269-86755288 | Msa0581370:CDS | 50.0% | |
| CTTTCCCTTGACAAAGCCTC+TGG | + | chr4_1:86755305-86755324 | Msa0581370:CDS | 50.0% | |
| ! | CAGAACCAGAGGCTTTGTCA+AGG | - | chr4_1:86755313-86755332 | None:intergenic | 50.0% |
| ! | CTTGACAAAGCCTCTGGTTC+TGG | + | chr4_1:86755311-86755330 | Msa0581370:CDS | 50.0% |
| ATGCAGCTCAAGCTTGTACC+TGG | + | chr4_1:86755374-86755393 | Msa0581370:CDS | 50.0% | |
| CTTGTACCTGGAAACTCTGC+AGG | + | chr4_1:86755386-86755405 | Msa0581370:CDS | 50.0% | |
| GGTGCTTACACAATGCGTTG+AGG | - | chr4_1:86755730-86755749 | None:intergenic | 50.0% | |
| GCTGATGATTGGGCAACAAG+AGG | + | chr4_1:86756015-86756034 | Msa0581370:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+CGG | + | chr4_1:86756018-86756037 | Msa0581370:CDS | 50.0% | |
| ! | GCGGTCTTGTCAAGACAGAT+TGG | + | chr4_1:86756037-86756056 | Msa0581370:CDS | 50.0% |
| ! | GGCCTTGGGGAAATCTTTTG+AGG | - | chr4_1:86756212-86756231 | None:intergenic | 50.0% |
| CACTCTATTGGAAGGCCTTG+GGG | - | chr4_1:86756225-86756244 | None:intergenic | 50.0% | |
| GCACTCTATTGGAAGGCCTT+GGG | - | chr4_1:86756226-86756245 | None:intergenic | 50.0% | |
| TGCACTCTATTGGAAGGCCT+TGG | - | chr4_1:86756227-86756246 | None:intergenic | 50.0% | |
| GGATCAAGAGGGACCATACT+GGG | - | chr4_1:86756824-86756843 | None:intergenic | 50.0% | |
| TGGATCAAGAGGGACCATAC+TGG | - | chr4_1:86756825-86756844 | None:intergenic | 50.0% | |
| CAACAGAATTGCAGCGTGTG+TGG | + | chr4_1:86756971-86756990 | Msa0581370:CDS | 50.0% | |
| CGTTACATTTCAGCTCAGCC+GGG | - | chr4_1:86757008-86757027 | None:intergenic | 50.0% | |
| ACAGTGCCTGCAGAGTTTCC+AGG | - | chr4_1:86755395-86755414 | None:intergenic | 55.0% | |
| ACAGTGCCTGCAGAGTTTCC+AGG | - | chr4_1:86755395-86755414 | None:intergenic | 55.0% | |
| CGCGGTCTGCTATACCAGAC+CGG | - | chr4_1:86756887-86756906 | None:intergenic | 60.0% | |
| CGGTCTGGTATAGCAGACCG+CGG | + | chr4_1:86756885-86756904 | Msa0581370:intron | 60.0% | |
| GGTCTGGTATAGCAGACCGC+GGG | + | chr4_1:86756886-86756905 | Msa0581370:intron | 60.0% | |
| GACCGCGGGCAGCATGAAAA+AGG | + | chr4_1:86756900-86756919 | Msa0581370:intron | 60.0% | |
| !! | CGCCTTTTTCATGCTGCCCG+CGG | - | chr4_1:86756905-86756924 | None:intergenic | 60.0% |
| !! | GAAAAAGGCGCTGCAGCAGC+AGG | + | chr4_1:86756915-86756934 | Msa0581370:CDS | 60.0% |
| CGCGGTCTGCTATACCAGAC+CGG | - | chr4_1:86756887-86756906 | None:intergenic | 60.0% | |
| CGGTCTGGTATAGCAGACCG+CGG | + | chr4_1:86756885-86756904 | Msa0581370:intron | 60.0% | |
| GGTCTGGTATAGCAGACCGC+GGG | + | chr4_1:86756886-86756905 | Msa0581370:intron | 60.0% | |
| GACCGCGGGCAGCATGAAAA+AGG | + | chr4_1:86756900-86756919 | Msa0581370:intron | 60.0% | |
| !! | CGCCTTTTTCATGCTGCCCG+CGG | - | chr4_1:86756905-86756924 | None:intergenic | 60.0% |
| !! | GAAAAAGGCGCTGCAGCAGC+AGG | + | chr4_1:86756915-86756934 | Msa0581370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86755084 | 86757053 | 86755084 | ID=Msa0581370;Name=Msa0581370 |
| chr4_1 | mRNA | 86755084 | 86757053 | 86755084 | ID=Msa0581370-mRNA-1;Parent=Msa0581370;Name=Msa0581370-mRNA-1;_AED=0.45;_eAED=0.45;_QI=59|0.33|0.25|0.75|1|1|4|0|297 |
| chr4_1 | exon | 86755084 | 86755427 | 86755084 | ID=Msa0581370-mRNA-1:exon:32108;Parent=Msa0581370-mRNA-1 |
| chr4_1 | exon | 86755547 | 86755740 | 86755547 | ID=Msa0581370-mRNA-1:exon:32109;Parent=Msa0581370-mRNA-1 |
| chr4_1 | exon | 86755909 | 86756170 | 86755909 | ID=Msa0581370-mRNA-1:exon:32110;Parent=Msa0581370-mRNA-1 |
| chr4_1 | exon | 86756901 | 86757053 | 86756901 | ID=Msa0581370-mRNA-1:exon:32111;Parent=Msa0581370-mRNA-1 |
| chr4_1 | five_prime_UTR | 86755084 | 86755142 | 86755084 | ID=Msa0581370-mRNA-1:five_prime_utr;Parent=Msa0581370-mRNA-1 |
| chr4_1 | CDS | 86755143 | 86755427 | 86755143 | ID=Msa0581370-mRNA-1:cds;Parent=Msa0581370-mRNA-1 |
| chr4_1 | CDS | 86755547 | 86755740 | 86755547 | ID=Msa0581370-mRNA-1:cds;Parent=Msa0581370-mRNA-1 |
| chr4_1 | CDS | 86755909 | 86756170 | 86755909 | ID=Msa0581370-mRNA-1:cds;Parent=Msa0581370-mRNA-1 |
| chr4_1 | CDS | 86756901 | 86757053 | 86756901 | ID=Msa0581370-mRNA-1:cds;Parent=Msa0581370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
