Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732340 | AES98216.1 | 90.411 | 146 | 10 | 2 | 1 | 142 | 1 | 146 | 7.35e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732340 | sp|B8CXL0|DNAJ_HALOH | 45.055 | 91 | 48 | 1 | 39 | 127 | 1 | 91 | 8.17e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732340 | G7KBI1 | 90.411 | 146 | 10 | 2 | 1 | 142 | 1 | 146 | 3.51e-90 | 267 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047660 | Msa0732340 | 0.840926 | 6.479783e-58 | -8.615850e-47 |
| Msa0608250 | Msa0732340 | 0.826657 | 2.405211e-54 | -8.615850e-47 |
| Msa0691320 | Msa0732340 | 0.824335 | 8.535835e-54 | -8.615850e-47 |
| Msa0732340 | Msa0870130 | 0.815011 | 1.150194e-51 | -8.615850e-47 |
| Msa0732340 | Msa1079630 | 0.817055 | 4.021043e-52 | -8.615850e-47 |
| Msa0732340 | Msa1204870 | 0.812932 | 3.306044e-51 | -8.615850e-47 |
| Msa0732340 | Msa1204900 | 0.810535 | 1.098453e-50 | -8.615850e-47 |
| Msa0732340 | Msa1256490 | 0.819153 | 1.348446e-52 | -8.615850e-47 |
| Msa0732340 | Msa1296810 | 0.810521 | 1.106049e-50 | -8.615850e-47 |
| Msa0177640 | Msa0732340 | 0.807641 | 4.578075e-50 | -8.615850e-47 |
| Msa0382050 | Msa0732340 | 0.805871 | 1.082757e-49 | -8.615850e-47 |
| Msa0492330 | Msa0732340 | 0.812424 | 4.269393e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732340 | MtrunA17_Chr5g0427221 | 90.411 | 146 | 10 | 2 | 1 | 142 | 1 | 146 | 6.76e-94 | 267 |
| Msa0732340 | MtrunA17_Chr4g0021141 | 62.000 | 100 | 38 | 0 | 40 | 139 | 18 | 117 | 2.31e-42 | 137 |
| Msa0732340 | MtrunA17_Chr2g0282761 | 46.739 | 92 | 40 | 3 | 44 | 127 | 4 | 94 | 1.28e-16 | 74.7 |
| Msa0732340 | MtrunA17_Chr2g0282741 | 53.125 | 64 | 29 | 1 | 44 | 106 | 4 | 67 | 2.55e-16 | 73.9 |
| Msa0732340 | MtrunA17_Chr3g0138471 | 54.688 | 64 | 28 | 1 | 44 | 106 | 4 | 67 | 2.87e-16 | 73.6 |
| Msa0732340 | MtrunA17_Chr7g0263971 | 52.174 | 69 | 32 | 1 | 39 | 106 | 364 | 432 | 3.49e-16 | 73.9 |
| Msa0732340 | MtrunA17_Chr4g0040501 | 50.000 | 64 | 31 | 1 | 44 | 106 | 4 | 67 | 3.29e-15 | 70.9 |
| Msa0732340 | MtrunA17_Chr1g0159491 | 45.333 | 75 | 41 | 0 | 39 | 113 | 1 | 75 | 8.26e-15 | 65.1 |
| Msa0732340 | MtrunA17_Chr4g0006391 | 50.000 | 64 | 31 | 1 | 44 | 106 | 4 | 67 | 9.71e-15 | 69.7 |
| Msa0732340 | MtrunA17_Chr5g0426951 | 40.964 | 83 | 49 | 0 | 24 | 106 | 63 | 145 | 1.45e-14 | 69.3 |
| Msa0732340 | MtrunA17_Chr2g0324921 | 50.000 | 64 | 31 | 1 | 44 | 106 | 4 | 67 | 6.18e-14 | 67.4 |
| Msa0732340 | MtrunA17_Chr5g0414471 | 33.645 | 107 | 63 | 1 | 43 | 141 | 24 | 130 | 9.23e-14 | 67.0 |
| Msa0732340 | MtrunA17_Chr3g0087741 | 43.750 | 64 | 36 | 0 | 43 | 106 | 88 | 151 | 1.07e-13 | 67.0 |
| Msa0732340 | MtrunA17_Chr5g0399201 | 42.254 | 71 | 38 | 1 | 43 | 110 | 11 | 81 | 1.09e-13 | 67.0 |
| Msa0732340 | MtrunA17_Chr7g0269841 | 46.479 | 71 | 37 | 1 | 36 | 106 | 19 | 88 | 5.20e-13 | 64.7 |
| Msa0732340 | MtrunA17_Chr8g0344721 | 37.234 | 94 | 44 | 3 | 41 | 123 | 7 | 96 | 6.61e-13 | 63.5 |
| Msa0732340 | MtrunA17_Chr1g0159511 | 41.463 | 82 | 48 | 0 | 39 | 120 | 1 | 82 | 7.22e-13 | 64.3 |
| Msa0732340 | MtrunA17_Chr4g0010781 | 43.284 | 67 | 38 | 0 | 40 | 106 | 82 | 148 | 7.83e-13 | 64.3 |
| Msa0732340 | MtrunA17_Chr1g0209551 | 31.858 | 113 | 69 | 1 | 37 | 141 | 9 | 121 | 8.03e-13 | 64.3 |
| Msa0732340 | MtrunA17_Chr2g0333221 | 36.937 | 111 | 49 | 4 | 14 | 109 | 30 | 134 | 2.49e-12 | 63.2 |
| Msa0732340 | MtrunA17_Chr7g0271891 | 45.588 | 68 | 33 | 1 | 45 | 108 | 17 | 84 | 2.62e-12 | 60.8 |
| Msa0732340 | MtrunA17_Chr7g0242951 | 42.857 | 70 | 39 | 1 | 40 | 109 | 23 | 91 | 3.98e-12 | 62.4 |
| Msa0732340 | MtrunA17_Chr5g0415731 | 44.595 | 74 | 33 | 1 | 44 | 109 | 5 | 78 | 6.71e-12 | 59.3 |
| Msa0732340 | MtrunA17_Chr6g0478651 | 46.875 | 64 | 33 | 1 | 43 | 106 | 67 | 129 | 8.44e-12 | 61.6 |
| Msa0732340 | MtrunA17_Chr5g0393371 | 40.244 | 82 | 49 | 0 | 39 | 120 | 1 | 82 | 1.37e-11 | 60.8 |
| Msa0732340 | MtrunA17_Chr3g0123861 | 43.939 | 66 | 36 | 1 | 44 | 109 | 82 | 146 | 1.56e-11 | 60.5 |
| Msa0732340 | MtrunA17_Chr6g0476751 | 42.105 | 95 | 50 | 3 | 15 | 106 | 35 | 127 | 1.68e-11 | 60.8 |
| Msa0732340 | MtrunA17_Chr5g0405501 | 42.500 | 80 | 43 | 2 | 29 | 106 | 57 | 135 | 1.74e-11 | 58.5 |
| Msa0732340 | MtrunA17_Chr8g0352451 | 41.111 | 90 | 52 | 1 | 32 | 120 | 59 | 148 | 5.35e-11 | 58.9 |
| Msa0732340 | MtrunA17_Chr2g0307061 | 39.437 | 71 | 42 | 1 | 39 | 109 | 105 | 174 | 7.71e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732340 | AT2G33735.1 | 63.964 | 111 | 38 | 2 | 32 | 142 | 11 | 119 | 7.00e-45 | 143 |
| Msa0732340 | AT2G33735.2 | 63.964 | 111 | 38 | 2 | 32 | 142 | 11 | 119 | 7.00e-45 | 143 |
| Msa0732340 | AT5G16650.1 | 65.347 | 101 | 35 | 0 | 40 | 140 | 7 | 107 | 6.46e-44 | 140 |
| Msa0732340 | AT5G16650.2 | 65.347 | 101 | 35 | 0 | 40 | 140 | 7 | 107 | 1.01e-43 | 141 |
| Msa0732340 | AT3G47940.1 | 52.941 | 68 | 30 | 1 | 44 | 109 | 4 | 71 | 3.05e-16 | 74.3 |
| Msa0732340 | AT5G25530.2 | 49.315 | 73 | 36 | 1 | 44 | 115 | 4 | 76 | 7.40e-16 | 73.2 |
| Msa0732340 | AT1G59725.1 | 52.308 | 65 | 29 | 1 | 44 | 106 | 4 | 68 | 5.99e-15 | 70.5 |
| Msa0732340 | AT4G28480.2 | 51.562 | 64 | 30 | 1 | 44 | 106 | 4 | 67 | 7.61e-15 | 69.7 |
| Msa0732340 | AT5G01390.4 | 49.254 | 67 | 33 | 1 | 44 | 109 | 4 | 70 | 8.42e-15 | 68.9 |
| Msa0732340 | AT4G28480.1 | 51.562 | 64 | 30 | 1 | 44 | 106 | 4 | 67 | 1.01e-14 | 70.1 |
| Msa0732340 | AT5G01390.3 | 50.000 | 64 | 31 | 1 | 44 | 106 | 4 | 67 | 1.03e-14 | 68.9 |
| Msa0732340 | AT3G08910.1 | 51.562 | 64 | 30 | 1 | 44 | 106 | 4 | 67 | 1.17e-14 | 69.7 |
| Msa0732340 | AT5G01390.2 | 50.000 | 64 | 31 | 1 | 44 | 106 | 4 | 67 | 1.69e-14 | 68.6 |
| Msa0732340 | AT2G20560.1 | 50.000 | 64 | 31 | 1 | 44 | 106 | 4 | 67 | 1.83e-14 | 69.3 |
| Msa0732340 | AT5G01390.1 | 50.000 | 64 | 31 | 1 | 44 | 106 | 4 | 67 | 2.59e-14 | 68.6 |
| Msa0732340 | AT1G10350.1 | 48.438 | 64 | 32 | 1 | 44 | 106 | 4 | 67 | 5.17e-14 | 67.8 |
| Msa0732340 | AT5G25530.1 | 45.679 | 81 | 35 | 2 | 44 | 115 | 4 | 84 | 1.06e-13 | 67.0 |
| Msa0732340 | AT5G48030.1 | 42.857 | 70 | 40 | 0 | 37 | 106 | 87 | 156 | 1.23e-13 | 67.0 |
| Msa0732340 | AT1G68370.1 | 33.628 | 113 | 67 | 1 | 37 | 141 | 10 | 122 | 1.62e-13 | 66.6 |
| Msa0732340 | AT3G62600.1 | 46.269 | 67 | 36 | 0 | 43 | 109 | 25 | 91 | 2.89e-13 | 65.9 |
| Msa0732340 | AT3G08970.1 | 44.286 | 70 | 38 | 1 | 40 | 109 | 23 | 91 | 4.44e-13 | 65.5 |
| Msa0732340 | AT3G08970.2 | 44.286 | 70 | 38 | 1 | 40 | 109 | 23 | 91 | 4.44e-13 | 65.5 |
| Msa0732340 | AT1G59980.2 | 32.692 | 104 | 62 | 1 | 46 | 141 | 25 | 128 | 6.14e-13 | 65.1 |
| Msa0732340 | AT1G59980.1 | 32.692 | 104 | 62 | 1 | 46 | 141 | 25 | 128 | 7.10e-13 | 64.7 |
| Msa0732340 | AT1G24120.1 | 40.845 | 71 | 42 | 0 | 43 | 113 | 19 | 89 | 9.86e-13 | 64.3 |
| Msa0732340 | AT1G56300.2 | 45.588 | 68 | 33 | 1 | 45 | 108 | 14 | 81 | 2.21e-12 | 60.5 |
| Msa0732340 | AT2G21510.3 | 42.683 | 82 | 47 | 0 | 39 | 120 | 1 | 82 | 3.89e-12 | 62.8 |
| Msa0732340 | AT2G21510.1 | 42.683 | 82 | 47 | 0 | 39 | 120 | 1 | 82 | 3.89e-12 | 62.8 |
| Msa0732340 | AT2G21510.2 | 42.683 | 82 | 47 | 0 | 39 | 120 | 1 | 82 | 4.08e-12 | 62.8 |
| Msa0732340 | AT2G21510.4 | 42.683 | 82 | 47 | 0 | 39 | 120 | 1 | 82 | 4.08e-12 | 62.8 |
| Msa0732340 | AT1G56300.1 | 45.588 | 68 | 33 | 1 | 45 | 108 | 14 | 81 | 4.56e-12 | 60.5 |
| Msa0732340 | AT2G21510.5 | 42.683 | 82 | 47 | 0 | 39 | 120 | 1 | 82 | 4.61e-12 | 62.4 |
| Msa0732340 | AT5G03160.1 | 43.478 | 69 | 38 | 1 | 39 | 106 | 365 | 433 | 4.62e-12 | 62.8 |
| Msa0732340 | AT4G39960.1 | 38.824 | 85 | 49 | 2 | 25 | 109 | 68 | 149 | 1.15e-11 | 61.6 |
| Msa0732340 | AT4G39960.2 | 38.824 | 85 | 49 | 2 | 25 | 109 | 68 | 149 | 1.15e-11 | 61.6 |
| Msa0732340 | AT1G28210.3 | 40.299 | 67 | 40 | 0 | 40 | 106 | 44 | 110 | 1.54e-11 | 60.8 |
| Msa0732340 | AT2G22360.1 | 45.455 | 66 | 35 | 1 | 44 | 109 | 86 | 150 | 1.54e-11 | 61.2 |
| Msa0732340 | AT1G28210.1 | 40.299 | 67 | 40 | 0 | 40 | 106 | 44 | 110 | 1.59e-11 | 60.8 |
| Msa0732340 | AT1G71000.2 | 47.143 | 70 | 33 | 2 | 43 | 108 | 7 | 76 | 1.64e-11 | 58.9 |
| Msa0732340 | AT1G28210.2 | 40.299 | 67 | 40 | 0 | 40 | 106 | 44 | 110 | 1.68e-11 | 60.8 |
| Msa0732340 | AT1G72416.3 | 40.000 | 70 | 39 | 1 | 43 | 109 | 4 | 73 | 2.37e-11 | 59.3 |
| Msa0732340 | AT1G71000.1 | 47.143 | 70 | 33 | 2 | 43 | 108 | 7 | 76 | 3.21e-11 | 58.2 |
| Msa0732340 | AT5G18750.1 | 51.562 | 64 | 30 | 1 | 44 | 107 | 66 | 128 | 3.38e-11 | 60.1 |
| Msa0732340 | AT3G17830.1 | 46.032 | 63 | 33 | 1 | 44 | 106 | 63 | 124 | 3.80e-11 | 60.1 |
| Msa0732340 | AT1G72416.1 | 40.000 | 70 | 39 | 1 | 43 | 109 | 4 | 73 | 5.23e-11 | 58.2 |
| Msa0732340 | AT1G72416.4 | 40.000 | 70 | 39 | 1 | 43 | 109 | 4 | 73 | 5.52e-11 | 58.2 |
| Msa0732340 | AT1G72416.2 | 40.000 | 70 | 39 | 1 | 43 | 109 | 4 | 73 | 6.38e-11 | 57.8 |
| Msa0732340 | AT1G21080.1 | 40.244 | 82 | 48 | 1 | 39 | 120 | 1 | 81 | 6.56e-11 | 59.3 |
| Msa0732340 | AT1G21080.3 | 40.244 | 82 | 48 | 1 | 39 | 120 | 1 | 81 | 6.81e-11 | 59.3 |
Find 55 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGAATTTGGTCGGGTTT+TGG | 0.162317 | 5_1:+44580883 | None:intergenic |
| TGATATTGATGTTCTTAATT+TGG | 0.210352 | 5_1:-44577406 | Msa0732340:three_prime_UTR |
| AGGAATGTGGGTCGGGAATT+TGG | 0.255023 | 5_1:+44580872 | None:intergenic |
| TCCTGGTCTTTCTGTTTATC+CGG | 0.282566 | 5_1:+44580543 | None:intergenic |
| TTGGCATTAAGCATTCAATT+TGG | 0.310126 | 5_1:-44577641 | Msa0732340:CDS |
| CTGATAATGGCATGCAGTGC+CGG | 0.361977 | 5_1:+44577555 | None:intergenic |
| TAATTACATTCGTCTTGCTT+TGG | 0.372051 | 5_1:-44580669 | Msa0732340:intron |
| TCAGGATTATTACAAGATAC+TGG | 0.381658 | 5_1:-44580729 | Msa0732340:intron |
| TTCTTCCCATTCCCACATCA+TGG | 0.397478 | 5_1:+44580939 | None:intergenic |
| TCACGAAATGATTAAGTTTG+CGG | 0.414867 | 5_1:+44581019 | None:intergenic |
| AGGAGAGAGTATGACATAAA+CGG | 0.419785 | 5_1:-44578207 | Msa0732340:CDS |
| ACCGTGACGTGGCCGAATCC+TGG | 0.424294 | 5_1:+44580526 | None:intergenic |
| GAAGAAATCGAAGTTGAGAT+AGG | 0.427186 | 5_1:+44580852 | None:intergenic |
| GGAGAGAGTATGACATAAAC+GGG | 0.439604 | 5_1:-44578206 | Msa0732340:CDS |
| CCTCAACCATGATGTGGGAA+TGG | 0.450761 | 5_1:-44580945 | Msa0732340:exon |
| CCTGGTCTTTCTGTTTATCC+GGG | 0.450762 | 5_1:+44580544 | None:intergenic |
| TGTAAACAATGACTATCGTT+TGG | 0.455750 | 5_1:-44577444 | Msa0732340:three_prime_UTR |
| TGTCCAAGGGGCACTGGATG+TGG | 0.457239 | 5_1:+44577592 | None:intergenic |
| ATATTGACTTGCAATGGCCT+TGG | 0.458509 | 5_1:-44577660 | Msa0732340:CDS |
| TTGAGATAGGAATGTGGGTC+GGG | 0.467627 | 5_1:+44580865 | None:intergenic |
| CTCAACCATGATGTGGGAAT+GGG | 0.469046 | 5_1:-44580944 | Msa0732340:exon |
| GATGTGGATGTCTGAGATGC+TGG | 0.483596 | 5_1:+44577608 | None:intergenic |
| AGATATAAATGAGGCCTACC+AGG | 0.484166 | 5_1:-44580499 | Msa0732340:CDS |
| CCATTCCCACATCATGGTTG+AGG | 0.501927 | 5_1:+44580945 | None:intergenic |
| TGATAATGGCATGCAGTGCC+GGG | 0.505380 | 5_1:+44577556 | None:intergenic |
| GGATTATCTTAACCGTTACA+AGG | 0.513468 | 5_1:-44577688 | Msa0732340:CDS |
| ATGTGGGTCGGGAATTTGGT+CGG | 0.514552 | 5_1:+44580876 | None:intergenic |
| TGTGGGTCGGGAATTTGGTC+GGG | 0.522025 | 5_1:+44580877 | None:intergenic |
| TAAACAGAAAGACCAGGATT+CGG | 0.523730 | 5_1:-44580538 | Msa0732340:CDS |
| TTATTACAAGATACTGGAAG+TGG | 0.524795 | 5_1:-44580723 | Msa0732340:CDS |
| CTCTGCTCTCTCTAAACCCA+AGG | 0.525481 | 5_1:-44580830 | Msa0732340:intron |
| ATGATTAAGTTTGCGGTGAG+TGG | 0.533572 | 5_1:+44581026 | None:intergenic |
| CATCCACATCCAGTGCCCCT+TGG | 0.537201 | 5_1:-44577595 | Msa0732340:three_prime_UTR |
| CACTCTCCTCAACCATGATG+TGG | 0.540761 | 5_1:-44580951 | Msa0732340:exon |
| AAGTCTGAAGCTATTCCTCT+AGG | 0.547428 | 5_1:+44577507 | None:intergenic |
| ATATAAATAAATACCCTGGT+AGG | 0.557717 | 5_1:+44580485 | None:intergenic |
| AAATTGAATGCTTAATGCCA+AGG | 0.566829 | 5_1:+44577643 | None:intergenic |
| CGAGAATATGAGAGTGTGGT+CGG | 0.575648 | 5_1:+44580976 | None:intergenic |
| GGTCTCATATTGACTTGCAA+TGG | 0.584945 | 5_1:-44577666 | Msa0732340:CDS |
| ACATCAATATCATTGCATCA+TGG | 0.588336 | 5_1:+44577417 | None:intergenic |
| CGAAGTTGAGATAGGAATGT+GGG | 0.588768 | 5_1:+44580860 | None:intergenic |
| ACCAGGATTCGGCCACGTCA+CGG | 0.591695 | 5_1:-44580527 | Msa0732340:CDS |
| ACTCTCCTCAACCATGATGT+GGG | 0.607401 | 5_1:-44580950 | Msa0732340:exon |
| TATATCTTGAAACCGTGACG+TGG | 0.614774 | 5_1:+44580515 | None:intergenic |
| CCCGGATAAACAGAAAGACC+AGG | 0.622579 | 5_1:-44580544 | Msa0732340:CDS |
| ACGGTTTCAAGATATAAATG+AGG | 0.624622 | 5_1:-44580508 | Msa0732340:CDS |
| GTTGAGATAGGAATGTGGGT+CGG | 0.627338 | 5_1:+44580864 | None:intergenic |
| GAATACACAGAAATGGCACC+CGG | 0.630117 | 5_1:-44580562 | Msa0732340:intron |
| TCGAAGTTGAGATAGGAATG+TGG | 0.632051 | 5_1:+44580859 | None:intergenic |
| TGAACGAGAATATGAGAGTG+TGG | 0.643133 | 5_1:+44580972 | None:intergenic |
| TCAATATGAGACCCTTGTAA+CGG | 0.650508 | 5_1:+44577676 | None:intergenic |
| GATTATCTTAACCGTTACAA+GGG | 0.654119 | 5_1:-44577687 | Msa0732340:CDS |
| GATATAAATGAGGCCTACCA+GGG | 0.671787 | 5_1:-44580498 | Msa0732340:intron |
| AGTGGATTACGATGCAACTG+AGG | 0.678193 | 5_1:-44580705 | Msa0732340:CDS |
| AGATGCTTATGATGTCCTAG+AGG | 0.685240 | 5_1:-44577522 | Msa0732340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAATTAAGATGA+TGG | + | chr5_1:44577652-44577671 | None:intergenic | 10.0% |
| !!! | ATTAAAATTTTGTAATTTCA+GGG | + | chr5_1:44580424-44580443 | None:intergenic | 10.0% |
| !!! | ATTTTGAAATATTGATAATA+TGG | - | chr5_1:44580607-44580626 | Msa0732340:intron | 10.0% |
| !!! | ATGAATAGTTAATTAGTTTA+TGG | - | chr5_1:44577672-44577691 | Msa0732340:CDS | 15.0% |
| !! | TATTTATTCACGAAAAAAAA+AGG | + | chr5_1:44579059-44579078 | None:intergenic | 15.0% |
| !! | AAAATTATAAATCTCTTAGA+AGG | + | chr5_1:44579481-44579500 | None:intergenic | 15.0% |
| !!! | TAAACTAATGTTTTTTATGT+GGG | - | chr5_1:44579835-44579854 | Msa0732340:intron | 15.0% |
| !! | TTAAGAATTAATAACATAGT+TGG | - | chr5_1:44579882-44579901 | Msa0732340:intron | 15.0% |
| !! | TTAGATTATACTAACTTTAT+AGG | + | chr5_1:44580166-44580185 | None:intergenic | 15.0% |
| !!! | GATTAAAATTTTGTAATTTC+AGG | + | chr5_1:44580425-44580444 | None:intergenic | 15.0% |
| !! | AAAATATCAAATAAACAGAA+CGG | + | chr5_1:44580712-44580731 | None:intergenic | 15.0% |
| !!! | ATAAAAATTAAGATGATGGA+GGG | + | chr5_1:44577648-44577667 | None:intergenic | 20.0% |
| !!! | AATAAAAATTAAGATGATGG+AGG | + | chr5_1:44577649-44577668 | None:intergenic | 20.0% |
| !!! | AATTAGTTTATGGTTTGTTT+TGG | - | chr5_1:44577682-44577701 | Msa0732340:CDS | 20.0% |
| !! | CAATATATAAATAAATACCC+TGG | + | chr5_1:44577959-44577978 | None:intergenic | 20.0% |
| !! | TTTATAATATCTATGTGATC+TGG | - | chr5_1:44578219-44578238 | Msa0732340:CDS | 20.0% |
| !!! | AGGAGAAATTTTTATAGAAA+AGG | - | chr5_1:44578284-44578303 | Msa0732340:intron | 20.0% |
| !!! | TTCTAAAAGTAACTATAGTT+AGG | + | chr5_1:44578310-44578329 | None:intergenic | 20.0% |
| !!! | TTTTCTTAAATTACTACTAC+TGG | + | chr5_1:44578753-44578772 | None:intergenic | 20.0% |
| !! | ACATACATAGAATAAAAGAA+AGG | - | chr5_1:44578959-44578978 | Msa0732340:intron | 20.0% |
| !!! | ATGGTTTTTGCTTTTTTAAA+TGG | - | chr5_1:44579150-44579169 | Msa0732340:intron | 20.0% |
| !! | AAGGTTATAAATCATATCAA+AGG | + | chr5_1:44579462-44579481 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTAAGTTTATATG+CGG | - | chr5_1:44579722-44579741 | Msa0732340:intron | 20.0% |
| !! | AATATTAACTACACTAAATC+TGG | + | chr5_1:44579785-44579804 | None:intergenic | 20.0% |
| !!! | GTAAACTAATGTTTTTTATG+TGG | - | chr5_1:44579834-44579853 | Msa0732340:intron | 20.0% |
| !! | ACTAAATTAAAATTTCCAAC+AGG | + | chr5_1:44580101-44580120 | None:intergenic | 20.0% |
| !! | ATAGGCAAATAATAAAGAAT+AGG | + | chr5_1:44580148-44580167 | None:intergenic | 20.0% |
| !! | ATGATTACAATATCATTGTA+AGG | - | chr5_1:44580267-44580286 | Msa0732340:intron | 20.0% |
| !!! | TTGAAATATTGATAATATGG+AGG | - | chr5_1:44580610-44580629 | Msa0732340:intron | 20.0% |
| !! | TGATATTGATGTTCTTAATT+TGG | - | chr5_1:44581031-44581050 | Msa0732340:five_prime_UTR | 20.0% |
| !! | TTTCCTTTCTAATTTCGTTT+TGG | - | chr5_1:44577821-44577840 | Msa0732340:intron | 25.0% |
| !! | TTCCTTTCTAATTTCGTTTT+GGG | - | chr5_1:44577822-44577841 | Msa0732340:intron | 25.0% |
| ! | TGTATTCAGATTAATAGCAA+AGG | + | chr5_1:44577862-44577881 | None:intergenic | 25.0% |
| ! | TTAATCTGAATACACAGAAA+TGG | - | chr5_1:44577868-44577887 | Msa0732340:intron | 25.0% |
| ! | ATATAAATAAATACCCTGGT+AGG | + | chr5_1:44577955-44577974 | None:intergenic | 25.0% |
| !! | ATATCCATATTGTGTTGTTA+AGG | - | chr5_1:44578264-44578283 | Msa0732340:intron | 25.0% |
| !! | TAGAATTCTCTTTTGCATTA+TGG | - | chr5_1:44578325-44578344 | Msa0732340:intron | 25.0% |
| ! | ATGGTAAAAATTATCTTTGC+TGG | - | chr5_1:44578344-44578363 | Msa0732340:intron | 25.0% |
| !!! | TATGTTGACTTATTTGTTTC+TGG | - | chr5_1:44578434-44578453 | Msa0732340:intron | 25.0% |
| ! | TAATTTACCAACATGAAATG+TGG | - | chr5_1:44578552-44578571 | Msa0732340:intron | 25.0% |
| ! | AATTTACCAACATGAAATGT+GGG | - | chr5_1:44578553-44578572 | Msa0732340:intron | 25.0% |
| ! | AATTTGGATAACAATTGCAT+GGG | - | chr5_1:44578652-44578671 | Msa0732340:intron | 25.0% |
| ! | AAAAATTCAAACAGCCATAA+AGG | - | chr5_1:44578678-44578697 | Msa0732340:intron | 25.0% |
| ! | CCTAACTGAGATAAAAAAAA+CGG | - | chr5_1:44578912-44578931 | Msa0732340:intron | 25.0% |
| ! | ACAAAAATGTTGCATAACAA+AGG | - | chr5_1:44579030-44579049 | Msa0732340:intron | 25.0% |
| ! | TCGTGAATAAATACAATAGA+TGG | - | chr5_1:44579066-44579085 | Msa0732340:intron | 25.0% |
| ! | ATCTTAAGCCATTAAGATTA+AGG | + | chr5_1:44579132-44579151 | None:intergenic | 25.0% |
| ! | TTAATCTTAATGGCTTAAGA+TGG | - | chr5_1:44579131-44579150 | Msa0732340:intron | 25.0% |
| !!! | TTATTGAGTTGAATTAACCA+AGG | - | chr5_1:44579280-44579299 | Msa0732340:intron | 25.0% |
| ! | AATGCATGTAAAATAAAAGG+GGG | + | chr5_1:44579403-44579422 | None:intergenic | 25.0% |
| ! | CAATGCATGTAAAATAAAAG+GGG | + | chr5_1:44579404-44579423 | None:intergenic | 25.0% |
| ! | CCAATGCATGTAAAATAAAA+GGG | + | chr5_1:44579405-44579424 | None:intergenic | 25.0% |
| ! | ACCAATGCATGTAAAATAAA+AGG | + | chr5_1:44579406-44579425 | None:intergenic | 25.0% |
| ! | AGAATTAATAACATAGTTGG+TGG | - | chr5_1:44579885-44579904 | Msa0732340:intron | 25.0% |
| ! | AGTATAATCTAACATGTCTT+TGG | - | chr5_1:44580174-44580193 | Msa0732340:intron | 25.0% |
| !!! | TTCGAATATTGATAATGTGA+TGG | + | chr5_1:44580395-44580414 | None:intergenic | 25.0% |
| !! | ATTAACATTTTGCAATTCCA+GGG | - | chr5_1:44580581-44580600 | Msa0732340:intron | 25.0% |
| !!! | TCTGTTTTTACTACTGATAA+TGG | + | chr5_1:44580898-44580917 | None:intergenic | 25.0% |
| TCACGAAATGATTAAGTTTG+CGG | + | chr5_1:44577421-44577440 | None:intergenic | 30.0% | |
| !!! | TATGGTTTGTTTTGGTTTTC+AGG | - | chr5_1:44577690-44577709 | Msa0732340:CDS | 30.0% |
| TCAGGATTATTACAAGATAC+TGG | - | chr5_1:44577708-44577727 | Msa0732340:intron | 30.0% | |
| TTATTACAAGATACTGGAAG+TGG | - | chr5_1:44577714-44577733 | Msa0732340:intron | 30.0% | |
| TAATTACATTCGTCTTGCTT+TGG | - | chr5_1:44577768-44577787 | Msa0732340:intron | 30.0% | |
| ATCCCAAAACGAAATTAGAA+AGG | + | chr5_1:44577827-44577846 | None:intergenic | 30.0% | |
| ACGGTTTCAAGATATAAATG+AGG | - | chr5_1:44577929-44577948 | Msa0732340:intron | 30.0% | |
| AAGTACATAACAATCTGTCA+AGG | - | chr5_1:44578111-44578130 | Msa0732340:intron | 30.0% | |
| AGTACATAACAATCTGTCAA+GGG | - | chr5_1:44578112-44578131 | Msa0732340:intron | 30.0% | |
| ! | TAATTTAGGGACTAAGTTGA+TGG | - | chr5_1:44578156-44578175 | Msa0732340:intron | 30.0% |
| TTCTCCTTAACAACACAATA+TGG | + | chr5_1:44578271-44578290 | None:intergenic | 30.0% | |
| CATAAAGACTGTTATACTCA+AGG | + | chr5_1:44578418-44578437 | None:intergenic | 30.0% | |
| !! | GACTTATTTGTTTCTGGATT+TGG | - | chr5_1:44578440-44578459 | Msa0732340:intron | 30.0% |
| GAGTTATAAAATCTGAGCAT+TGG | + | chr5_1:44578519-44578538 | None:intergenic | 30.0% | |
| GAATTTGGATAACAATTGCA+TGG | - | chr5_1:44578651-44578670 | Msa0732340:intron | 30.0% | |
| ATTTGGATAACAATTGCATG+GGG | - | chr5_1:44578653-44578672 | Msa0732340:intron | 30.0% | |
| !!! | CTACAAAGGTACCAAATTTT+GGG | - | chr5_1:44578864-44578883 | Msa0732340:intron | 30.0% |
| !!! | CCGTTTTTTTTATCTCAGTT+AGG | + | chr5_1:44578915-44578934 | None:intergenic | 30.0% |
| AAAATGTTGCATAACAAAGG+TGG | - | chr5_1:44579033-44579052 | Msa0732340:intron | 30.0% | |
| TACGAAGACCTTAATCTTAA+TGG | - | chr5_1:44579121-44579140 | Msa0732340:intron | 30.0% | |
| AAATAAAAGGGGGAGAAAAA+AGG | + | chr5_1:44579393-44579412 | None:intergenic | 30.0% | |
| !!! | CCCTTTTATTTTACATGCAT+TGG | - | chr5_1:44579402-44579421 | Msa0732340:intron | 30.0% |
| ATGTGACATCAAAATTGTAG+TGG | + | chr5_1:44579506-44579525 | None:intergenic | 30.0% | |
| AACTACACTAAATCTGGATA+TGG | + | chr5_1:44579779-44579798 | None:intergenic | 30.0% | |
| AAGGAATATTTGTCTTCATC+TGG | - | chr5_1:44580286-44580305 | Msa0732340:intron | 30.0% | |
| GCATTGTTAAATACCCAAAT+TGG | - | chr5_1:44580335-44580354 | Msa0732340:intron | 30.0% | |
| ACAATTTCAACGACCAATTT+GGG | + | chr5_1:44580351-44580370 | None:intergenic | 30.0% | |
| TACAATTTCAACGACCAATT+TGG | + | chr5_1:44580352-44580371 | None:intergenic | 30.0% | |
| AAATTGGTCGTTGAAATTGT+AGG | - | chr5_1:44580351-44580370 | Msa0732340:intron | 30.0% | |
| ! | GATTAACATTTTGCAATTCC+AGG | - | chr5_1:44580580-44580599 | Msa0732340:intron | 30.0% |
| CAATATTTCAAAATGATCCC+TGG | + | chr5_1:44580601-44580620 | None:intergenic | 30.0% | |
| ! | TATTGATAATATGGAGGACT+AGG | - | chr5_1:44580616-44580635 | Msa0732340:intron | 30.0% |
| TACAATTTCAAAGACCAAGT+TGG | - | chr5_1:44580651-44580670 | Msa0732340:intron | 30.0% | |
| !! | TTTTCATTTTTGTTTGTCGC+AGG | - | chr5_1:44580728-44580747 | Msa0732340:CDS | 30.0% |
| GATTATCTTAACCGTTACAA+GGG | - | chr5_1:44580750-44580769 | Msa0732340:intron | 30.0% | |
| AAATTGAATGCTTAATGCCA+AGG | + | chr5_1:44580797-44580816 | None:intergenic | 30.0% | |
| TTGGCATTAAGCATTCAATT+TGG | - | chr5_1:44580796-44580815 | Msa0732340:intron | 30.0% | |
| TACTTCAAAAAACTGTCCAA+GGG | + | chr5_1:44580861-44580880 | None:intergenic | 30.0% | |
| TGTAAACAATGACTATCGTT+TGG | - | chr5_1:44580993-44581012 | Msa0732340:five_prime_UTR | 30.0% | |
| ACATCAATATCATTGCATCA+TGG | + | chr5_1:44581023-44581042 | None:intergenic | 30.0% | |
| GAAGAAATCGAAGTTGAGAT+AGG | + | chr5_1:44577588-44577607 | None:intergenic | 35.0% | |
| TAAACAGAAAGACCAGGATT+CGG | - | chr5_1:44577899-44577918 | Msa0732340:intron | 35.0% | |
| ATATATTGTGCTCTGTTGCA+TGG | - | chr5_1:44577971-44577990 | Msa0732340:intron | 35.0% | |
| AATCTGTCAAGGGACTAATT+TGG | - | chr5_1:44578122-44578141 | Msa0732340:intron | 35.0% | |
| TGGAGAGAGAGTCATAATTT+AGG | - | chr5_1:44578142-44578161 | Msa0732340:intron | 35.0% | |
| GGAGAGAGAGTCATAATTTA+GGG | - | chr5_1:44578143-44578162 | Msa0732340:intron | 35.0% | |
| TGCTGGAACTATTGTTTAGA+TGG | - | chr5_1:44578361-44578380 | Msa0732340:intron | 35.0% | |
| TTCCTGCATTTCGAAAATCA+TGG | - | chr5_1:44578465-44578484 | Msa0732340:intron | 35.0% | |
| ! | ATCCATGATTTTCGAAATGC+AGG | + | chr5_1:44578470-44578489 | None:intergenic | 35.0% |
| TTTCCAAAATGCAGCGAATT+TGG | - | chr5_1:44578636-44578655 | Msa0732340:intron | 35.0% | |
| ! | TATCCAAATTCGCTGCATTT+TGG | + | chr5_1:44578642-44578661 | None:intergenic | 35.0% |
| AATTCAAACAGCCATAAAGG+TGG | - | chr5_1:44578681-44578700 | Msa0732340:intron | 35.0% | |
| ! | CGCTTTTGATCAAAGACATT+AGG | + | chr5_1:44578838-44578857 | None:intergenic | 35.0% |
| ! | ATGTCTTTGATCAAAAGCGT+TGG | - | chr5_1:44578839-44578858 | Msa0732340:intron | 35.0% |
| !!! | GCTACAAAGGTACCAAATTT+TGG | - | chr5_1:44578863-44578882 | Msa0732340:intron | 35.0% |
| GATAAAAAAAACGGTTGTCG+TGG | - | chr5_1:44578921-44578940 | Msa0732340:intron | 35.0% | |
| AGATTAAGGTCTTCGTACTA+TGG | + | chr5_1:44579118-44579137 | None:intergenic | 35.0% | |
| GATGTTCAATGTTCAAACTC+TGG | + | chr5_1:44579208-44579227 | None:intergenic | 35.0% | |
| GCATCAGAAAGAGTTTGAAA+AGG | + | chr5_1:44579230-44579249 | None:intergenic | 35.0% | |
| GCAAATACCTTAATCCATGA+TGG | - | chr5_1:44579349-44579368 | Msa0732340:intron | 35.0% | |
| AACAATAATGCACTCCATCA+TGG | + | chr5_1:44579366-44579385 | None:intergenic | 35.0% | |
| AAGCATTTGACCAATAGTGA+AGG | - | chr5_1:44579935-44579954 | Msa0732340:intron | 35.0% | |
| !!! | TTTCAAGGTTTTGAGAGGAT+GGG | - | chr5_1:44579964-44579983 | Msa0732340:intron | 35.0% |
| TCAAGACAGCAGTTATGAAA+GGG | - | chr5_1:44580005-44580024 | Msa0732340:intron | 35.0% | |
| TATGAAAGGGGTTAGATTAG+CGG | - | chr5_1:44580018-44580037 | Msa0732340:intron | 35.0% | |
| !! | TTTTGAGTGATCCAGACAAA+AGG | - | chr5_1:44580210-44580229 | Msa0732340:intron | 35.0% |
| ! | AGGAGAGAGTATGACATAAA+CGG | - | chr5_1:44580230-44580249 | Msa0732340:intron | 35.0% |
| AATCAAATTCATCCCTCCAT+TGG | - | chr5_1:44580441-44580460 | Msa0732340:intron | 35.0% | |
| TGAATAGCAGATCCAAATAG+AGG | - | chr5_1:44580548-44580567 | Msa0732340:CDS | 35.0% | |
| GAATAGCAGATCCAAATAGA+GGG | - | chr5_1:44580549-44580568 | Msa0732340:CDS | 35.0% | |
| ATCAAGTTTGTCCCTCTATT+TGG | + | chr5_1:44580563-44580582 | None:intergenic | 35.0% | |
| GGATTATCTTAACCGTTACA+AGG | - | chr5_1:44580749-44580768 | Msa0732340:intron | 35.0% | |
| TCAATATGAGACCCTTGTAA+CGG | + | chr5_1:44580764-44580783 | None:intergenic | 35.0% | |
| ACTTCAAAAAACTGTCCAAG+GGG | + | chr5_1:44580860-44580879 | None:intergenic | 35.0% | |
| GTACTTCAAAAAACTGTCCA+AGG | + | chr5_1:44580862-44580881 | None:intergenic | 35.0% | |
| ATGATTAAGTTTGCGGTGAG+TGG | + | chr5_1:44577414-44577433 | None:intergenic | 40.0% | |
| TGAACGAGAATATGAGAGTG+TGG | + | chr5_1:44577468-44577487 | None:intergenic | 40.0% | |
| CGAAGTTGAGATAGGAATGT+GGG | + | chr5_1:44577580-44577599 | None:intergenic | 40.0% | |
| TCGAAGTTGAGATAGGAATG+TGG | + | chr5_1:44577581-44577600 | None:intergenic | 40.0% | |
| !! | ATTAAGATGATGGAGGGTGA+GGG | + | chr5_1:44577642-44577661 | None:intergenic | 40.0% |
| !! | AATTAAGATGATGGAGGGTG+AGG | + | chr5_1:44577643-44577662 | None:intergenic | 40.0% |
| ! | TCCTGGTCTTTCTGTTTATC+CGG | + | chr5_1:44577897-44577916 | None:intergenic | 40.0% |
| TATATCTTGAAACCGTGACG+TGG | + | chr5_1:44577925-44577944 | None:intergenic | 40.0% | |
| AGATATAAATGAGGCCTACC+AGG | - | chr5_1:44577938-44577957 | Msa0732340:intron | 40.0% | |
| GATATAAATGAGGCCTACCA+GGG | - | chr5_1:44577939-44577958 | Msa0732340:intron | 40.0% | |
| TTTCCTGTAGTTGTGCATCT+TGG | - | chr5_1:44578489-44578508 | Msa0732340:intron | 40.0% | |
| !!! | CAAAGGTACCAAATTTTGGG+TGG | - | chr5_1:44578867-44578886 | Msa0732340:intron | 40.0% |
| CGACTTTACCACCCAAAATT+TGG | + | chr5_1:44578878-44578897 | None:intergenic | 40.0% | |
| AGTTTGAGTAGCATCTACTG+AGG | - | chr5_1:44578999-44579018 | Msa0732340:intron | 40.0% | |
| CTTTGTGACGAGAAGAACAA+GGG | - | chr5_1:44579089-44579108 | Msa0732340:intron | 40.0% | |
| TAGCTAAAGCGATTGAGCTA+GGG | + | chr5_1:44579252-44579271 | None:intergenic | 40.0% | |
| ! | ATGCACTCCATCATGGATTA+AGG | + | chr5_1:44579359-44579378 | None:intergenic | 40.0% |
| ! | TTCCTTAAGCTTTTGTAGGG+AGG | + | chr5_1:44579589-44579608 | None:intergenic | 40.0% |
| TCCCTACAAAAGCTTAAGGA+AGG | - | chr5_1:44579588-44579607 | Msa0732340:intron | 40.0% | |
| ! | CCCTTCCTTAAGCTTTTGTA+GGG | + | chr5_1:44579592-44579611 | None:intergenic | 40.0% |
| CCCTACAAAAGCTTAAGGAA+GGG | - | chr5_1:44579589-44579608 | Msa0732340:intron | 40.0% | |
| ! | TCCCTTCCTTAAGCTTTTGT+AGG | + | chr5_1:44579593-44579612 | None:intergenic | 40.0% |
| TTAAGGAAGGGAACGAAAAG+AGG | - | chr5_1:44579601-44579620 | Msa0732340:intron | 40.0% | |
| AAGAATAGGGGCTAAAGCTT+GGG | + | chr5_1:44579634-44579653 | None:intergenic | 40.0% | |
| AAAGAATAGGGGCTAAAGCT+TGG | + | chr5_1:44579635-44579654 | None:intergenic | 40.0% | |
| GGGGAGAAAAGAAAGAATAG+GGG | + | chr5_1:44579646-44579665 | None:intergenic | 40.0% | |
| GGGGGAGAAAAGAAAGAATA+GGG | + | chr5_1:44579647-44579666 | None:intergenic | 40.0% | |
| TGGGGGAGAAAAGAAAGAAT+AGG | + | chr5_1:44579648-44579667 | None:intergenic | 40.0% | |
| GAAAGGACAACCTTCACTAT+TGG | + | chr5_1:44579948-44579967 | None:intergenic | 40.0% | |
| TAGTGAAGGTTGTCCTTTCA+AGG | - | chr5_1:44579949-44579968 | Msa0732340:intron | 40.0% | |
| !!! | TGTCCTTTCAAGGTTTTGAG+AGG | - | chr5_1:44579959-44579978 | Msa0732340:intron | 40.0% |
| CATCCTCTCAAAACCTTGAA+AGG | + | chr5_1:44579965-44579984 | None:intergenic | 40.0% | |
| !!! | CTTTCAAGGTTTTGAGAGGA+TGG | - | chr5_1:44579963-44579982 | Msa0732340:intron | 40.0% |
| GTCAAGACAGCAGTTATGAA+AGG | - | chr5_1:44580004-44580023 | Msa0732340:intron | 40.0% | |
| CAAGACAGCAGTTATGAAAG+GGG | - | chr5_1:44580006-44580025 | Msa0732340:intron | 40.0% | |
| ! | TCATACTCTCTCCTTTTGTC+TGG | + | chr5_1:44580224-44580243 | None:intergenic | 40.0% |
| ! | GGAGAGAGTATGACATAAAC+GGG | - | chr5_1:44580231-44580250 | Msa0732340:intron | 40.0% |
| GAGTGAGTAAGTATCCAACT+TGG | + | chr5_1:44580668-44580687 | None:intergenic | 40.0% | |
| !! | GGTCTCATATTGACTTGCAA+TGG | - | chr5_1:44580771-44580790 | Msa0732340:intron | 40.0% |
| !! | ATATTGACTTGCAATGGCCT+TGG | - | chr5_1:44580777-44580796 | Msa0732340:intron | 40.0% |
| !!! | GGACAGTTTTTTGAAGTACC+CGG | - | chr5_1:44580863-44580882 | Msa0732340:CDS | 40.0% |
| AGATGCTTATGATGTCCTAG+AGG | - | chr5_1:44580915-44580934 | Msa0732340:CDS | 40.0% | |
| ! | AAGTCTGAAGCTATTCCTCT+AGG | + | chr5_1:44580933-44580952 | None:intergenic | 40.0% |
| ! | CGAGAATATGAGAGTGTGGT+CGG | + | chr5_1:44577464-44577483 | None:intergenic | 45.0% |
| ACTCTCCTCAACCATGATGT+GGG | - | chr5_1:44577487-44577506 | Msa0732340:three_prime_UTR | 45.0% | |
| CTCAACCATGATGTGGGAAT+GGG | - | chr5_1:44577493-44577512 | Msa0732340:three_prime_UTR | 45.0% | |
| TTCTTCCCATTCCCACATCA+TGG | + | chr5_1:44577501-44577520 | None:intergenic | 45.0% | |
| TTGAGATAGGAATGTGGGTC+GGG | + | chr5_1:44577575-44577594 | None:intergenic | 45.0% | |
| GTTGAGATAGGAATGTGGGT+CGG | + | chr5_1:44577576-44577595 | None:intergenic | 45.0% | |
| !!! | GTGAGGGTTTTAGGAACCTT+GGG | + | chr5_1:44577626-44577645 | None:intergenic | 45.0% |
| !! | AGTGGATTACGATGCAACTG+AGG | - | chr5_1:44577732-44577751 | Msa0732340:intron | 45.0% |
| GAATACACAGAAATGGCACC+CGG | - | chr5_1:44577875-44577894 | Msa0732340:intron | 45.0% | |
| ! | CCTGGTCTTTCTGTTTATCC+GGG | + | chr5_1:44577896-44577915 | None:intergenic | 45.0% |
| TGACCAAGATGCACAACTAC+AGG | + | chr5_1:44578495-44578514 | None:intergenic | 45.0% | |
| TTCCTGCATTTGTGTACCTC+GGG | + | chr5_1:44578607-44578626 | None:intergenic | 45.0% | |
| GTTCCTGCATTTGTGTACCT+CGG | + | chr5_1:44578608-44578627 | None:intergenic | 45.0% | |
| !! | TCAAAGCATCGCCACCTTTA+TGG | + | chr5_1:44578695-44578714 | None:intergenic | 45.0% |
| CACATCACATGTGTCAGTGT+CGG | - | chr5_1:44578792-44578811 | Msa0732340:intron | 45.0% | |
| !! | CAAAAGCGTTGGTGCTACAA+AGG | - | chr5_1:44578850-44578869 | Msa0732340:intron | 45.0% |
| GTTGTCGTGGATGAGTAGTA+GGG | - | chr5_1:44578934-44578953 | Msa0732340:intron | 45.0% | |
| GCTTTGTGACGAGAAGAACA+AGG | - | chr5_1:44579088-44579107 | Msa0732340:intron | 45.0% | |
| GTAGCTAAAGCGATTGAGCT+AGG | + | chr5_1:44579253-44579272 | None:intergenic | 45.0% | |
| AGCTTCATGTGCTCAATCTG+AGG | + | chr5_1:44579317-44579336 | None:intergenic | 45.0% | |
| CGCTCATCCTTATCAGAGAT+TGG | - | chr5_1:44579429-44579448 | Msa0732340:intron | 45.0% | |
| CATCCTTATCAGAGATTGGC+TGG | - | chr5_1:44579433-44579452 | Msa0732340:intron | 45.0% | |
| CAACCAGCCAATCTCTGATA+AGG | + | chr5_1:44579439-44579458 | None:intergenic | 45.0% | |
| CTCCTCCCTACAAAAGCTTA+AGG | - | chr5_1:44579584-44579603 | Msa0732340:intron | 45.0% | |
| TAGGAGAACGGGTAATCTTG+GGG | + | chr5_1:44579666-44579685 | None:intergenic | 45.0% | |
| GTAGGAGAACGGGTAATCTT+GGG | + | chr5_1:44579667-44579686 | None:intergenic | 45.0% | |
| AGTAGGAGAACGGGTAATCT+TGG | + | chr5_1:44579668-44579687 | None:intergenic | 45.0% | |
| AAGATTACCCGTTCTCCTAC+TGG | - | chr5_1:44579667-44579686 | Msa0732340:intron | 45.0% | |
| ACAACAAGCCAGTAGGAGAA+CGG | + | chr5_1:44579678-44579697 | None:intergenic | 45.0% | |
| ! | GTTTTCCACAACAAGCCAGT+AGG | + | chr5_1:44579685-44579704 | None:intergenic | 45.0% |
| !! | ACTGGCTTGTTGTGGAAAAC+TGG | - | chr5_1:44579685-44579704 | Msa0732340:intron | 45.0% |
| TGGATATGGTAACAGTCAGC+TGG | + | chr5_1:44579765-44579784 | None:intergenic | 45.0% | |
| !!! | GGTTTTGAGAGGATGGGTTA+TGG | - | chr5_1:44579970-44579989 | Msa0732340:intron | 45.0% |
| TCCCTCCATTGGTATGCTTA+CGG | - | chr5_1:44580452-44580471 | Msa0732340:intron | 45.0% | |
| TCCGTAAGCATACCAATGGA+GGG | + | chr5_1:44580456-44580475 | None:intergenic | 45.0% | |
| CTAGTCCGTAAGCATACCAA+TGG | + | chr5_1:44580460-44580479 | None:intergenic | 45.0% | |
| CACTCTCCTCAACCATGATG+TGG | - | chr5_1:44577486-44577505 | Msa0732340:three_prime_UTR | 50.0% | |
| CCATTCCCACATCATGGTTG+AGG | + | chr5_1:44577495-44577514 | None:intergenic | 50.0% | |
| CCTCAACCATGATGTGGGAA+TGG | - | chr5_1:44577492-44577511 | Msa0732340:three_prime_UTR | 50.0% | |
| !!! | AATTTGGTCGGGTTTTGGGG+AGG | + | chr5_1:44577552-44577571 | None:intergenic | 50.0% |
| ! | GGGAATTTGGTCGGGTTTTG+GGG | + | chr5_1:44577555-44577574 | None:intergenic | 50.0% |
| ! | CGGGAATTTGGTCGGGTTTT+GGG | + | chr5_1:44577556-44577575 | None:intergenic | 50.0% |
| ! | TCGGGAATTTGGTCGGGTTT+TGG | + | chr5_1:44577557-44577576 | None:intergenic | 50.0% |
| ATGTGGGTCGGGAATTTGGT+CGG | + | chr5_1:44577564-44577583 | None:intergenic | 50.0% | |
| AGGAATGTGGGTCGGGAATT+TGG | + | chr5_1:44577568-44577587 | None:intergenic | 50.0% | |
| CTCTGCTCTCTCTAAACCCA+AGG | - | chr5_1:44577607-44577626 | Msa0732340:three_prime_UTR | 50.0% | |
| !!! | GGTGAGGGTTTTAGGAACCT+TGG | + | chr5_1:44577627-44577646 | None:intergenic | 50.0% |
| ! | TGATGGAGGGTGAGGGTTTT+AGG | + | chr5_1:44577635-44577654 | None:intergenic | 50.0% |
| CCCGGATAAACAGAAAGACC+AGG | - | chr5_1:44577893-44577912 | Msa0732340:intron | 50.0% | |
| GGTTGTCGTGGATGAGTAGT+AGG | - | chr5_1:44578933-44578952 | Msa0732340:intron | 50.0% | |
| TGTGACGAGAAGAACAAGGG+AGG | - | chr5_1:44579092-44579111 | Msa0732340:intron | 50.0% | |
| ! | CATGTGCTCAATCTGAGGCT+AGG | + | chr5_1:44579312-44579331 | None:intergenic | 50.0% |
| ! | AAGAGTGTATCATCCCTCCC+TGG | - | chr5_1:44579560-44579579 | Msa0732340:intron | 50.0% |
| ! | CTTTTGTAGGGAGGAGACCA+GGG | + | chr5_1:44579580-44579599 | None:intergenic | 50.0% |
| AGGAGAACGGGTAATCTTGG+GGG | + | chr5_1:44579665-44579684 | None:intergenic | 50.0% | |
| CAACAAGCCAGTAGGAGAAC+GGG | + | chr5_1:44579677-44579696 | None:intergenic | 50.0% | |
| !! | GTTCTCCTACTGGCTTGTTG+TGG | - | chr5_1:44579677-44579696 | Msa0732340:intron | 50.0% |
| GTCCGTAAGCATACCAATGG+AGG | + | chr5_1:44580457-44580476 | None:intergenic | 50.0% | |
| ! | GATGTGGATGTCTGAGATGC+TGG | + | chr5_1:44580832-44580851 | None:intergenic | 50.0% |
| ! | AAAAACTGTCCAAGGGGCAC+TGG | + | chr5_1:44580854-44580873 | None:intergenic | 50.0% |
| !! | TGATAATGGCATGCAGTGCC+GGG | + | chr5_1:44580884-44580903 | None:intergenic | 50.0% |
| !! | CTGATAATGGCATGCAGTGC+CGG | + | chr5_1:44580885-44580904 | None:intergenic | 50.0% |
| TGTGGGTCGGGAATTTGGTC+GGG | + | chr5_1:44577563-44577582 | None:intergenic | 55.0% | |
| GGACGGCCCACATTTCATGT+TGG | + | chr5_1:44578562-44578581 | None:intergenic | 55.0% | |
| AATGTGGGCCGTCCGATGAT+AGG | - | chr5_1:44578568-44578587 | Msa0732340:intron | 55.0% | |
| AGTCCAGCCCGTCCTATCAT+CGG | + | chr5_1:44578583-44578602 | None:intergenic | 55.0% | |
| TGCCCGAGGTACACAAATGC+AGG | - | chr5_1:44578602-44578621 | Msa0732340:intron | 55.0% | |
| CTGAGGCTAGGCATGTACCT+TGG | + | chr5_1:44579300-44579319 | None:intergenic | 55.0% | |
| ! | GCTTTTGTAGGGAGGAGACC+AGG | + | chr5_1:44579581-44579600 | None:intergenic | 55.0% |
| AACAGGCAACAGCACACGTC+AGG | + | chr5_1:44580084-44580103 | None:intergenic | 55.0% | |
| ! | TGACGTGTGCTGTTGCCTGT+TGG | - | chr5_1:44580083-44580102 | Msa0732340:intron | 55.0% |
| ACCAGGATTCGGCCACGTCA+CGG | - | chr5_1:44577910-44577929 | Msa0732340:intron | 60.0% | |
| TGGGCCGTCCGATGATAGGA+CGG | - | chr5_1:44578572-44578591 | Msa0732340:intron | 60.0% | |
| CAGCCCGTCCTATCATCGGA+CGG | + | chr5_1:44578579-44578598 | None:intergenic | 60.0% | |
| TGTAGGGAGGAGACCAGGGA+GGG | + | chr5_1:44579576-44579595 | None:intergenic | 60.0% | |
| TTGTAGGGAGGAGACCAGGG+AGG | + | chr5_1:44579577-44579596 | None:intergenic | 60.0% | |
| AGGCAACAGCACACGTCAGG+AGG | + | chr5_1:44580081-44580100 | None:intergenic | 60.0% | |
| CATCCACATCCAGTGCCCCT+TGG | - | chr5_1:44580842-44580861 | Msa0732340:CDS | 60.0% | |
| !! | TGTCCAAGGGGCACTGGATG+TGG | + | chr5_1:44580848-44580867 | None:intergenic | 60.0% |
| ACCGTGACGTGGCCGAATCC+TGG | + | chr5_1:44577914-44577933 | None:intergenic | 65.0% | |
| GGGCCGTCCGATGATAGGAC+GGG | - | chr5_1:44578573-44578592 | Msa0732340:intron | 65.0% | |
| CGTCCGATGATAGGACGGGC+TGG | - | chr5_1:44578577-44578596 | Msa0732340:intron | 65.0% | |
| !! | AGGACGGGCTGGACTGCCCG+AGG | - | chr5_1:44578588-44578607 | Msa0732340:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 44577404 | 44581055 | 44577404 | ID=Msa0732340;Name=Msa0732340 |
| chr5_1 | mRNA | 44577404 | 44581055 | 44577404 | ID=Msa0732340-mRNA-1;Parent=Msa0732340;Name=Msa0732340-mRNA-1;_AED=0.31;_eAED=0.31;_QI=96|1|1|1|1|1|5|234|142 |
| chr5_1 | exon | 44577404 | 44577709 | 44577404 | ID=Msa0732340-mRNA-1:exon:12662;Parent=Msa0732340-mRNA-1 |
| chr5_1 | exon | 44578176 | 44578249 | 44578176 | ID=Msa0732340-mRNA-1:exon:12661;Parent=Msa0732340-mRNA-1 |
| chr5_1 | exon | 44580499 | 44580574 | 44580499 | ID=Msa0732340-mRNA-1:exon:12660;Parent=Msa0732340-mRNA-1 |
| chr5_1 | exon | 44580670 | 44580747 | 44580670 | ID=Msa0732340-mRNA-1:exon:12659;Parent=Msa0732340-mRNA-1 |
| chr5_1 | exon | 44580831 | 44581055 | 44580831 | ID=Msa0732340-mRNA-1:exon:12658;Parent=Msa0732340-mRNA-1 |
| chr5_1 | five_prime_UTR | 44580960 | 44581055 | 44580960 | ID=Msa0732340-mRNA-1:five_prime_utr;Parent=Msa0732340-mRNA-1 |
| chr5_1 | CDS | 44580831 | 44580959 | 44580831 | ID=Msa0732340-mRNA-1:cds;Parent=Msa0732340-mRNA-1 |
| chr5_1 | CDS | 44580670 | 44580747 | 44580670 | ID=Msa0732340-mRNA-1:cds;Parent=Msa0732340-mRNA-1 |
| chr5_1 | CDS | 44580499 | 44580574 | 44580499 | ID=Msa0732340-mRNA-1:cds;Parent=Msa0732340-mRNA-1 |
| chr5_1 | CDS | 44578176 | 44578249 | 44578176 | ID=Msa0732340-mRNA-1:cds;Parent=Msa0732340-mRNA-1 |
| chr5_1 | CDS | 44577638 | 44577709 | 44577638 | ID=Msa0732340-mRNA-1:cds;Parent=Msa0732340-mRNA-1 |
| chr5_1 | three_prime_UTR | 44577404 | 44577637 | 44577404 | ID=Msa0732340-mRNA-1:three_prime_utr;Parent=Msa0732340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
