AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0492330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492330 MtrunA17_Chr3g0084881 95.855 193 8 0 1 193 1 193 7.06e-123 345
Msa0492330 MtrunA17_Chr3g0082061 55.000 60 26 1 89 147 16 75 1.02e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492330 AT5G40950.1 63.131 198 66 4 1 193 3 198 6.91e-73 219
Msa0492330 AT5G15220.2 56.989 93 39 1 56 147 45 137 3.39e-24 93.6
Msa0492330 AT5G15220.1 56.989 93 39 1 56 147 45 137 3.39e-24 93.6
Msa0492330 AT2G16930.1 65.278 72 25 0 56 127 45 116 4.29e-24 93.2
Msa0492330 AT2G16930.3 65.278 72 25 0 56 127 45 116 4.29e-24 93.2
Msa0492330 AT2G16930.4 65.278 72 25 0 56 127 45 116 4.29e-24 93.2
Msa0492330 AT2G16930.2 65.278 72 25 0 56 127 45 116 4.29e-24 93.2

Find 97 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTCGGTGTTAAAGTTTA+TGG 0.177876 3_4:-15828940 Msa0492330:CDS
TACTGTCCTGTAATTGGTTT+GGG 0.190536 3_4:+15827030 None:intergenic
ATTTAACAACTCCATCAATT+AGG 0.209145 3_4:+15827504 None:intergenic
TGGCTATACTGTCCTGTAAT+TGG 0.263182 3_4:+15827024 None:intergenic
GTTGTTAAATTTGAGAAATA+TGG 0.286354 3_4:-15827491 Msa0492330:CDS
TCCATCAATTAGGGAGAAAA+TGG 0.286561 3_4:+15827514 None:intergenic
TCCACGCTGACGAACGATAA+TGG 0.287537 3_4:+15828894 None:intergenic
ATAGCCATTCACTTTCAATT+TGG 0.293830 3_4:-15827008 Msa0492330:three_prime_UTR
CTCCCTTCTTGTGAGCATTC+CGG 0.294541 3_4:+15829001 None:intergenic
AGCCGAGTCACGACCATTCT+TGG 0.305650 3_4:+15828969 None:intergenic
TTTAACAACTCCATCAATTA+GGG 0.327228 3_4:+15827505 None:intergenic
TAAGGAAGATAGAGTACTTC+AGG 0.334007 3_4:-15827310 Msa0492330:CDS
ATACTGTCCTGTAATTGGTT+TGG 0.337307 3_4:+15827029 None:intergenic
ACCCCGATAGCTATAGATTA+AGG 0.337827 3_4:-15827328 Msa0492330:CDS
AGTGGTGGAACCTGATAAAA+AGG 0.340910 3_4:+15829083 None:intergenic
TAAATGCAAGGCATATATTA+AGG 0.343388 3_4:-15826772 Msa0492330:three_prime_UTR
ATATGGACCTGACAAGAAAA+AGG 0.362247 3_4:-15827474 Msa0492330:intron
CATTCACTTTCAATTTGGTT+GGG 0.388910 3_4:-15827003 Msa0492330:three_prime_UTR
AAATGAAGAGGAGGTGGATA+AGG 0.389690 3_4:+15829248 None:intergenic
GATGAGACGTGAACGCAAAA+AGG 0.391120 3_4:-15827288 Msa0492330:CDS
ATATAACAGGTACAATCTTC+AGG 0.397123 3_4:+15826825 None:intergenic
TAGCTATCGGGGTTCGGAAC+TGG 0.398737 3_4:+15827338 None:intergenic
TTCCTTAATCTATAGCTATC+GGG 0.403484 3_4:+15827326 None:intergenic
GAGGTGGATAAGGGGAAAAG+TGG 0.403796 3_4:+15829258 None:intergenic
TTCTATTTGAGTAAATGAAA+TGG 0.412055 3_4:-15826971 Msa0492330:three_prime_UTR
ATTGTACTCTAAAATATAAC+AGG 0.413008 3_4:+15826812 None:intergenic
AATGAAGAGGAGGTGGATAA+GGG 0.413080 3_4:+15829249 None:intergenic
TTCCACCATGGCTGTATGCA+TGG 0.414968 3_4:-15829172 Msa0492330:exon
CCATTCACTTTCAATTTGGT+TGG 0.420264 3_4:-15827004 Msa0492330:three_prime_UTR
ATCGGTCAGCACTGATAATC+CGG 0.421185 3_4:-15829020 Msa0492330:CDS
ATATTAAGGTACTACACAAT+TGG 0.423181 3_4:-15826758 Msa0492330:three_prime_UTR
GAAGTATAGAATCAACAATC+TGG 0.424433 3_4:+15827194 None:intergenic
GGGACACTAAGGAAAAGTTT+TGG 0.427358 3_4:+15827051 None:intergenic
AGTGTCCCCAAACCAATTAC+AGG 0.428358 3_4:-15827036 Msa0492330:three_prime_UTR
GCAGGAAAGAATGTAGGAAT+TGG 0.450063 3_4:-15827548 Msa0492330:CDS
CTTCCTTAATCTATAGCTAT+CGG 0.452680 3_4:+15827325 None:intergenic
AATCTATAGCTATCGGGGTT+CGG 0.454206 3_4:+15827332 None:intergenic
GACTCGGCTGGAAGGCGTCT+CGG 0.459266 3_4:-15828955 Msa0492330:CDS
TCCACCATGGCTGTATGCAT+GGG 0.465483 3_4:-15829171 Msa0492330:exon
AGACAATATTACAATGCTAA+AGG 0.483377 3_4:+15827109 None:intergenic
GTGTAAAATCTAGCCGTCTT+CGG 0.485723 3_4:-15827159 Msa0492330:three_prime_UTR
TTCGGAACTGGTTCTTCTCG+TGG 0.494529 3_4:+15827350 None:intergenic
TAATTGGTTTGGGGACACTA+AGG 0.503826 3_4:+15827040 None:intergenic
CCAACCAAATTGAAAGTGAA+TGG 0.506387 3_4:+15827004 None:intergenic
AAGAATGGTCGTGACTCGGC+TGG 0.507588 3_4:-15828967 Msa0492330:CDS
TCCATTATCGTTCGTCAGCG+TGG 0.519050 3_4:-15828895 Msa0492330:CDS
GGAAGATGAAGATGAAGATG+AGG 0.519197 3_4:+15829104 None:intergenic
AGGTGGATAAGGGGAAAAGT+GGG 0.521172 3_4:+15829259 None:intergenic
TGAATGAAATGAAGAGGAGG+TGG 0.522327 3_4:+15829242 None:intergenic
CTCTATTGCGGCATCATCAA+CGG 0.525471 3_4:+15827220 None:intergenic
GGTGACCAGGTCGCTAAACC+TGG 0.525958 3_4:-15828919 Msa0492330:CDS
GAAGATGAAGATGAAGATGA+GGG 0.529006 3_4:+15829105 None:intergenic
TGAGAGATAAGACTCAAGGA+AGG 0.531263 3_4:+15829217 None:intergenic
GAGGCCAAGTTTGAAAACTT+AGG 0.538642 3_4:+15826875 None:intergenic
CAGCCATGGTGGAAACTGTT+GGG 0.544181 3_4:+15829181 None:intergenic
TCGGAACTGGTTCTTCTCGT+GGG 0.545521 3_4:+15827351 None:intergenic
AATGCTCACAAGAAGGGAGC+AGG 0.545655 3_4:-15828997 Msa0492330:CDS
TCAACTTAGATCGGTTGTAA+AGG 0.545945 3_4:+15826910 None:intergenic
GCTGACCGATGATGAATTCG+AGG 0.548418 3_4:+15829033 None:intergenic
AGATGAAGATGAAGATGAGG+GGG 0.548767 3_4:+15829107 None:intergenic
AATCCGGAATGCTCACAAGA+AGG 0.555772 3_4:-15829004 Msa0492330:CDS
TACCAAGAATGGTCGTGACT+CGG 0.555979 3_4:-15828971 Msa0492330:CDS
ACAGCCATGGTGGAAACTGT+TGG 0.556995 3_4:+15829180 None:intergenic
CGTTCGTCAGCGTGGAACCA+AGG 0.557359 3_4:-15828887 Msa0492330:intron
TGGAACCAGGTTTAGCGACC+TGG 0.559263 3_4:+15828914 None:intergenic
AAGGGATGAATGAAATGAAG+AGG 0.562517 3_4:+15829236 None:intergenic
AGCTAAGCATCAACTTAGAT+CGG 0.565164 3_4:+15826901 None:intergenic
ATGAAGAGGAGGTGGATAAG+GGG 0.568474 3_4:+15829250 None:intergenic
GGAGCAGGAAGTACCAAGAA+TGG 0.569534 3_4:-15828982 Msa0492330:CDS
GAAGTGAGAGATAAGACTCA+AGG 0.573323 3_4:+15829213 None:intergenic
ATCCGGAATGCTCACAAGAA+GGG 0.574035 3_4:-15829003 Msa0492330:CDS
TTTCACGCAGGAAAGAATGT+AGG 0.575613 3_4:-15827554 Msa0492330:CDS
CTCTCCCTCGAATTCATCAT+CGG 0.577761 3_4:-15829038 Msa0492330:CDS
ATGGTCGTGACTCGGCTGGA+AGG 0.580035 3_4:-15828963 Msa0492330:CDS
TCCTTAATCTATAGCTATCG+GGG 0.582549 3_4:+15827327 None:intergenic
TGTTAAAGTTTATGGTGACC+AGG 0.587699 3_4:-15828932 Msa0492330:CDS
GAGAGATAAGACTCAAGGAA+GGG 0.599835 3_4:+15829218 None:intergenic
CAGAGAAATTGAACCATACA+CGG 0.614937 3_4:-15827074 Msa0492330:three_prime_UTR
AAAGAATGTAGGAATTGGCA+AGG 0.623999 3_4:-15827543 Msa0492330:CDS
CAAACAAAACTATAAATGCA+AGG 0.627779 3_4:-15826784 Msa0492330:three_prime_UTR
CAATTAGGGAGAAAATGGTA+TGG 0.636675 3_4:+15827519 None:intergenic
ACAATCTGGATTCTCTATTG+CGG 0.641419 3_4:+15827208 None:intergenic
AAGATGAAGATGAAGATGAG+GGG 0.642716 3_4:+15829106 None:intergenic
GGATGAATGAAATGAAGAGG+AGG 0.646722 3_4:+15829239 None:intergenic
ACAATCTTCAGGATAACACT+AGG 0.647628 3_4:+15826836 None:intergenic
TGATGGAGTCATACGAAGAG+TGG 0.649417 3_4:+15829065 None:intergenic
ACCCATGCATACAGCCATGG+TGG 0.650077 3_4:+15829170 None:intergenic
CAAAACTTGTAGTTTCACGC+AGG 0.653399 3_4:-15827566 Msa0492330:intron
ATTCGAGGGAGAGATACTGA+TGG 0.655380 3_4:+15829048 None:intergenic
TGGAGTCATACGAAGAGTGG+TGG 0.657319 3_4:+15829068 None:intergenic
ACTGTCCTGTAATTGGTTTG+GGG 0.658231 3_4:+15827031 None:intergenic
TGACGAACGATAATGGAACC+AGG 0.673053 3_4:+15828901 None:intergenic
GAAACCCATGCATACAGCCA+TGG 0.673634 3_4:+15829167 None:intergenic
CTGACCGATGATGAATTCGA+GGG 0.678497 3_4:+15829034 None:intergenic
AGGACATGTCACAGAGACAG+AGG 0.682381 3_4:+15826856 None:intergenic
CAACCCAACAGTTTCCACCA+TGG 0.696365 3_4:-15829184 Msa0492330:exon
ACGGAAGCGAGCATTAGCTG+TGG 0.714472 3_4:+15827239 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATGAATTTTGAAATTA+TGG - chr3_4:15827236-15827255 Msa0492330:CDS 10.0%
!! AAGAGAAAAAAAAATGAAAT+TGG - chr3_4:15827302-15827321 Msa0492330:CDS 15.0%
!!! ACATAATTTATGTTTTCTAT+AGG + chr3_4:15827350-15827369 None:intergenic 15.0%
!! AAATCCATAAACTTAAAAAA+GGG + chr3_4:15827812-15827831 None:intergenic 15.0%
!! CTTGATATTATAGAAAATTA+CGG - chr3_4:15828178-15828197 Msa0492330:intron 15.0%
!!! TTTTAGTAAGAAAAGAATTG+TGG - chr3_4:15827183-15827202 Msa0492330:three_prime_UTR 20.0%
!! CAAAATTCATATAACAATTC+AGG + chr3_4:15827230-15827249 None:intergenic 20.0%
!! ATTCTTAATGACAATTAACA+TGG + chr3_4:15827262-15827281 None:intergenic 20.0%
!! TAGAAAACATAAATTATGTC+TGG - chr3_4:15827351-15827370 Msa0492330:CDS 20.0%
!! ATCATAACAATCAAATCTTA+GGG + chr3_4:15827749-15827768 None:intergenic 20.0%
!! AATCATAACAATCAAATCTT+AGG + chr3_4:15827750-15827769 None:intergenic 20.0%
!! AAGATTTGATTGTTATGATT+TGG - chr3_4:15827750-15827769 Msa0492330:intron 20.0%
!! AATCCATAAACTTAAAAAAG+GGG + chr3_4:15827811-15827830 None:intergenic 20.0%
!! CAAATCCATAAACTTAAAAA+AGG + chr3_4:15827813-15827832 None:intergenic 20.0%
!!! CGTAATTTTCTATAATATCA+AGG + chr3_4:15828180-15828199 None:intergenic 20.0%
!!! CTTATCATGATTTTAAATTG+CGG + chr3_4:15828304-15828323 None:intergenic 20.0%
!!! GCAATTTAAAATCATGATAA+GGG - chr3_4:15828303-15828322 Msa0492330:intron 20.0%
!! TTCAACAATATCTTAAAAAC+TGG + chr3_4:15828373-15828392 None:intergenic 20.0%
!! GAAAAATAATCAGAACTAAA+AGG + chr3_4:15828415-15828434 None:intergenic 20.0%
!! GTTGTTAAATTTGAGAAATA+TGG - chr3_4:15828514-15828533 Msa0492330:intron 20.0%
!! TTCTATTTGAGTAAATGAAA+TGG - chr3_4:15829034-15829053 Msa0492330:CDS 20.0%
!!! ATTGTACTCTAAAATATAAC+AGG + chr3_4:15829196-15829215 None:intergenic 20.0%
! GTCATTAAGAATTATACGTT+TGG - chr3_4:15827270-15827289 Msa0492330:CDS 25.0%
! AAACATAAATTATGTCTGGA+AGG - chr3_4:15827355-15827374 Msa0492330:CDS 25.0%
! ACTGTCAGTGAATAAAAATT+TGG - chr3_4:15827688-15827707 Msa0492330:intron 25.0%
!!! TTTCCCCTTTTTTAAGTTTA+TGG - chr3_4:15827805-15827824 Msa0492330:intron 25.0%
! TAGAAAATTACGGAAAAATG+CGG - chr3_4:15828188-15828207 Msa0492330:intron 25.0%
!! CGCAATTTAAAATCATGATA+AGG - chr3_4:15828302-15828321 Msa0492330:intron 25.0%
! TTTAACAACTCCATCAATTA+GGG + chr3_4:15828503-15828522 None:intergenic 25.0%
! ATTTAACAACTCCATCAATT+AGG + chr3_4:15828504-15828523 None:intergenic 25.0%
!! TTTATTACCTTTTTCTTGTC+AGG + chr3_4:15828541-15828560 None:intergenic 25.0%
! AGACAATATTACAATGCTAA+AGG + chr3_4:15828899-15828918 None:intergenic 25.0%
!!! GTAATATTGTCTTTGTTTTC+TGG - chr3_4:15828907-15828926 Msa0492330:CDS 25.0%
!!! CTTGCATTTATAGTTTTGTT+TGG + chr3_4:15829223-15829242 None:intergenic 25.0%
! CAAACAAAACTATAAATGCA+AGG - chr3_4:15829221-15829240 Msa0492330:five_prime_UTR 25.0%
! TAAATGCAAGGCATATATTA+AGG - chr3_4:15829233-15829252 Msa0492330:five_prime_UTR 25.0%
!! ATATTAAGGTACTACACAAT+TGG - chr3_4:15829247-15829266 Msa0492330:five_prime_UTR 25.0%
! TCTTCATCTTCCTTTTTATC+AGG - chr3_4:15826912-15826931 Msa0492330:three_prime_UTR 30.0%
ATAAAAATTTGGCACAACTG+AGG - chr3_4:15827699-15827718 Msa0492330:intron 30.0%
AAATCTTAGGGTTAACTACA+TGG + chr3_4:15827737-15827756 None:intergenic 30.0%
! TGTTATGATTTGGCACAATT+TGG - chr3_4:15827760-15827779 Msa0492330:intron 30.0%
TTACTTCTCTATGCATTTCT+AGG + chr3_4:15827944-15827963 None:intergenic 30.0%
! ACCATACTGATCAAAAGTAT+CGG + chr3_4:15828030-15828049 None:intergenic 30.0%
! AGGAAGTTCTTTAAAAGTGA+TGG + chr3_4:15828069-15828088 None:intergenic 30.0%
CTGAATATAGAACAAACATG+AGG + chr3_4:15828089-15828108 None:intergenic 30.0%
! GGTGACTTTGATTTAAAACA+TGG + chr3_4:15828145-15828164 None:intergenic 30.0%
CAAATACAGACTCAATGTAA+AGG + chr3_4:15828265-15828284 None:intergenic 30.0%
TTACATTGAGTCTGTATTTG+TGG - chr3_4:15828265-15828284 Msa0492330:intron 30.0%
!! AATCATGATAAGGGTGTTAT+AGG - chr3_4:15828312-15828331 Msa0492330:intron 30.0%
!! AGCTAGTTAATTTGTACTCT+AGG + chr3_4:15828599-15828618 None:intergenic 30.0%
TTCCTTAATCTATAGCTATC+GGG + chr3_4:15828682-15828701 None:intergenic 30.0%
CTTCCTTAATCTATAGCTAT+CGG + chr3_4:15828683-15828702 None:intergenic 30.0%
GAAGTATAGAATCAACAATC+TGG + chr3_4:15828814-15828833 None:intergenic 30.0%
AAAAGAAAAACAACCGAAGA+CGG + chr3_4:15828862-15828881 None:intergenic 30.0%
ATAGCCATTCACTTTCAATT+TGG - chr3_4:15828997-15829016 Msa0492330:CDS 30.0%
CATTCACTTTCAATTTGGTT+GGG - chr3_4:15829002-15829021 Msa0492330:CDS 30.0%
! TTCACCTAAGTTTTCAAACT+TGG - chr3_4:15829126-15829145 Msa0492330:CDS 30.0%
ATATAACAGGTACAATCTTC+AGG + chr3_4:15829183-15829202 None:intergenic 30.0%
AAGGGATGAATGAAATGAAG+AGG + chr3_4:15826772-15826791 None:intergenic 35.0%
AAGATGAAGATGAAGATGAG+GGG + chr3_4:15826902-15826921 None:intergenic 35.0%
GAAGATGAAGATGAAGATGA+GGG + chr3_4:15826903-15826922 None:intergenic 35.0%
TGTTAAAGTTTATGGTGACC+AGG - chr3_4:15827073-15827092 Msa0492330:three_prime_UTR 35.0%
CTATATCTACCTATTCAGAG+GGG + chr3_4:15827649-15827668 None:intergenic 35.0%
GCTATATCTACCTATTCAGA+GGG + chr3_4:15827650-15827669 None:intergenic 35.0%
CAGTAGATTTCATAGCAAAC+AGG + chr3_4:15827672-15827691 None:intergenic 35.0%
! ACCGATACTTTTGATCAGTA+TGG - chr3_4:15828026-15828045 Msa0492330:intron 35.0%
ATGCTACTGTAGAAGTAATG+AGG - chr3_4:15828117-15828136 Msa0492330:intron 35.0%
TGCTACTGTAGAAGTAATGA+GGG - chr3_4:15828118-15828137 Msa0492330:intron 35.0%
TAAATCAAAGTCACCGTTAG+TGG - chr3_4:15828150-15828169 Msa0492330:intron 35.0%
ATATCAAGGATCACCACTAA+CGG + chr3_4:15828166-15828185 None:intergenic 35.0%
ATTGAGTCTGTATTTGTGGT+TGG - chr3_4:15828269-15828288 Msa0492330:intron 35.0%
TTGAGTCTGTATTTGTGGTT+GGG - chr3_4:15828270-15828289 Msa0492330:intron 35.0%
!! CTTAAAAACTGGTTCGACAA+AGG + chr3_4:15828362-15828381 None:intergenic 35.0%
CAGAACTAAAAGGAACAGTA+AGG + chr3_4:15828405-15828424 None:intergenic 35.0%
AAAGAATGTAGGAATTGGCA+AGG - chr3_4:15828462-15828481 Msa0492330:intron 35.0%
CAATTAGGGAGAAAATGGTA+TGG + chr3_4:15828489-15828508 None:intergenic 35.0%
! ACCATTTTCTCCCTAATTGA+TGG - chr3_4:15828490-15828509 Msa0492330:intron 35.0%
TCCATCAATTAGGGAGAAAA+TGG + chr3_4:15828494-15828513 None:intergenic 35.0%
ATATGGACCTGACAAGAAAA+AGG - chr3_4:15828531-15828550 Msa0492330:intron 35.0%
!! AATTTGTACTCTAGGATTGC+AGG + chr3_4:15828591-15828610 None:intergenic 35.0%
TCCTTAATCTATAGCTATCG+GGG + chr3_4:15828681-15828700 None:intergenic 35.0%
! TAAGGAAGATAGAGTACTTC+AGG - chr3_4:15828695-15828714 Msa0492330:intron 35.0%
ACAATCTGGATTCTCTATTG+CGG + chr3_4:15828800-15828819 None:intergenic 35.0%
CAGAGAAATTGAACCATACA+CGG - chr3_4:15828931-15828950 Msa0492330:CDS 35.0%
! TACTGTCCTGTAATTGGTTT+GGG + chr3_4:15828978-15828997 None:intergenic 35.0%
ATACTGTCCTGTAATTGGTT+TGG + chr3_4:15828979-15828998 None:intergenic 35.0%
CCAACCAAATTGAAAGTGAA+TGG + chr3_4:15829004-15829023 None:intergenic 35.0%
CCATTCACTTTCAATTTGGT+TGG - chr3_4:15829001-15829020 Msa0492330:CDS 35.0%
TCAACTTAGATCGGTTGTAA+AGG + chr3_4:15829098-15829117 None:intergenic 35.0%
AGCTAAGCATCAACTTAGAT+CGG + chr3_4:15829107-15829126 None:intergenic 35.0%
ACAATCTTCAGGATAACACT+AGG + chr3_4:15829172-15829191 None:intergenic 35.0%
AATGAAGAGGAGGTGGATAA+GGG + chr3_4:15826759-15826778 None:intergenic 40.0%
AAATGAAGAGGAGGTGGATA+AGG + chr3_4:15826760-15826779 None:intergenic 40.0%
TGAATGAAATGAAGAGGAGG+TGG + chr3_4:15826766-15826785 None:intergenic 40.0%
GGATGAATGAAATGAAGAGG+AGG + chr3_4:15826769-15826788 None:intergenic 40.0%
GAGAGATAAGACTCAAGGAA+GGG + chr3_4:15826790-15826809 None:intergenic 40.0%
TGAGAGATAAGACTCAAGGA+AGG + chr3_4:15826791-15826810 None:intergenic 40.0%
GAAGTGAGAGATAAGACTCA+AGG + chr3_4:15826795-15826814 None:intergenic 40.0%
AGATGAAGATGAAGATGAGG+GGG + chr3_4:15826901-15826920 None:intergenic 40.0%
GGAAGATGAAGATGAAGATG+AGG + chr3_4:15826904-15826923 None:intergenic 40.0%
! AGTGGTGGAACCTGATAAAA+AGG + chr3_4:15826925-15826944 None:intergenic 40.0%
!! CGTCTCGGTGTTAAAGTTTA+TGG - chr3_4:15827065-15827084 Msa0492330:three_prime_UTR 40.0%
AGAGAATGAAAGACACACCT+TGG + chr3_4:15827138-15827157 None:intergenic 40.0%
TCAACATTGGTCGTTGAGAT+TGG + chr3_4:15827381-15827400 None:intergenic 40.0%
TGGTCTAGCAACATCAACAT+TGG + chr3_4:15827394-15827413 None:intergenic 40.0%
! CTAGACCAGACACTTTTACT+CGG - chr3_4:15827406-15827425 Msa0492330:intron 40.0%
!! CTTTTACTCGGTTCGAAAAC+AGG - chr3_4:15827418-15827437 Msa0492330:intron 40.0%
GGCTATATCTACCTATTCAG+AGG + chr3_4:15827651-15827670 None:intergenic 40.0%
!! ATTTGCTTTTGCGATGCCAT+TGG - chr3_4:15828225-15828244 Msa0492330:intron 40.0%
TGAGTCTGTATTTGTGGTTG+GGG - chr3_4:15828271-15828290 Msa0492330:intron 40.0%
CAAAACTTGTAGTTTCACGC+AGG - chr3_4:15828439-15828458 Msa0492330:intron 40.0%
TTTCACGCAGGAAAGAATGT+AGG - chr3_4:15828451-15828470 Msa0492330:intron 40.0%
GCAGGAAAGAATGTAGGAAT+TGG - chr3_4:15828457-15828476 Msa0492330:intron 40.0%
AATCTATAGCTATCGGGGTT+CGG + chr3_4:15828676-15828695 None:intergenic 40.0%
ACCCCGATAGCTATAGATTA+AGG - chr3_4:15828677-15828696 Msa0492330:intron 40.0%
GTGTAAAATCTAGCCGTCTT+CGG - chr3_4:15828846-15828865 Msa0492330:intron 40.0%
! GGGACACTAAGGAAAAGTTT+TGG + chr3_4:15828957-15828976 None:intergenic 40.0%
!! TAATTGGTTTGGGGACACTA+AGG + chr3_4:15828968-15828987 None:intergenic 40.0%
!! ACTGTCCTGTAATTGGTTTG+GGG + chr3_4:15828977-15828996 None:intergenic 40.0%
TGGCTATACTGTCCTGTAAT+TGG + chr3_4:15828984-15829003 None:intergenic 40.0%
GAGGCCAAGTTTGAAAACTT+AGG + chr3_4:15829133-15829152 None:intergenic 40.0%
AGGTGGATAAGGGGAAAAGT+GGG + chr3_4:15826749-15826768 None:intergenic 45.0%
ATGAAGAGGAGGTGGATAAG+GGG + chr3_4:15826758-15826777 None:intergenic 45.0%
TGATGGAGTCATACGAAGAG+TGG + chr3_4:15826943-15826962 None:intergenic 45.0%
ATTCGAGGGAGAGATACTGA+TGG + chr3_4:15826960-15826979 None:intergenic 45.0%
CTCTCCCTCGAATTCATCAT+CGG - chr3_4:15826967-15826986 Msa0492330:three_prime_UTR 45.0%
CTGACCGATGATGAATTCGA+GGG + chr3_4:15826974-15826993 None:intergenic 45.0%
!! ATCGGTCAGCACTGATAATC+CGG - chr3_4:15826985-15827004 Msa0492330:three_prime_UTR 45.0%
AATCCGGAATGCTCACAAGA+AGG - chr3_4:15827001-15827020 Msa0492330:three_prime_UTR 45.0%
ATCCGGAATGCTCACAAGAA+GGG - chr3_4:15827002-15827021 Msa0492330:three_prime_UTR 45.0%
TACCAAGAATGGTCGTGACT+CGG - chr3_4:15827034-15827053 Msa0492330:three_prime_UTR 45.0%
!! TGACGAACGATAATGGAACC+AGG + chr3_4:15827107-15827126 None:intergenic 45.0%
!! TCGAACCGAGTAAAAGTGTC+TGG + chr3_4:15827414-15827433 None:intergenic 45.0%
TTCGAAAACAGGACCTCACA+CGG - chr3_4:15827429-15827448 Msa0492330:intron 45.0%
! GTTGTGCGTGTGTGAGTTTT+AGG - chr3_4:15827451-15827470 Msa0492330:intron 45.0%
CACAGTTTGTGCAAATCTCG+CGG - chr3_4:15827576-15827595 Msa0492330:intron 45.0%
! TGTGCAAATCTCGCGGATTA+AGG - chr3_4:15827583-15827602 Msa0492330:intron 45.0%
! GTGCAAATCTCGCGGATTAA+GGG - chr3_4:15827584-15827603 Msa0492330:intron 45.0%
GCTGTTAGGCACACACAATA+TGG - chr3_4:15827608-15827627 Msa0492330:intron 45.0%
GGTTCTTGAACTCTCACCAA+TGG + chr3_4:15828244-15828263 None:intergenic 45.0%
TCTGTATTTGTGGTTGGGGT+TGG - chr3_4:15828275-15828294 Msa0492330:intron 45.0%
CTGTATTTGTGGTTGGGGTT+GGG - chr3_4:15828276-15828295 Msa0492330:intron 45.0%
TGTATTTGTGGTTGGGGTTG+GGG - chr3_4:15828277-15828296 Msa0492330:intron 45.0%
GATGAGACGTGAACGCAAAA+AGG - chr3_4:15828717-15828736 Msa0492330:intron 45.0%
CTCTATTGCGGCATCATCAA+CGG + chr3_4:15828788-15828807 None:intergenic 45.0%
!! GGAAAAGTTTTGGCCGTGTA+TGG + chr3_4:15828947-15828966 None:intergenic 45.0%
AGTGTCCCCAAACCAATTAC+AGG - chr3_4:15828969-15828988 Msa0492330:CDS 45.0%
GAGGTGGATAAGGGGAAAAG+TGG + chr3_4:15826750-15826769 None:intergenic 50.0%
CAACCCAACAGTTTCCACCA+TGG - chr3_4:15826821-15826840 Msa0492330:three_prime_UTR 50.0%
! CAGCCATGGTGGAAACTGTT+GGG + chr3_4:15826827-15826846 None:intergenic 50.0%
! ACAGCCATGGTGGAAACTGT+TGG + chr3_4:15826828-15826847 None:intergenic 50.0%
TTCCACCATGGCTGTATGCA+TGG - chr3_4:15826833-15826852 Msa0492330:three_prime_UTR 50.0%
TCCACCATGGCTGTATGCAT+GGG - chr3_4:15826834-15826853 Msa0492330:three_prime_UTR 50.0%
GAAACCCATGCATACAGCCA+TGG + chr3_4:15826841-15826860 None:intergenic 50.0%
TGGAGTCATACGAAGAGTGG+TGG + chr3_4:15826940-15826959 None:intergenic 50.0%
GCTGACCGATGATGAATTCG+AGG + chr3_4:15826975-15826994 None:intergenic 50.0%
CTCCCTTCTTGTGAGCATTC+CGG + chr3_4:15827007-15827026 None:intergenic 50.0%
AATGCTCACAAGAAGGGAGC+AGG - chr3_4:15827008-15827027 Msa0492330:three_prime_UTR 50.0%
!! GGAGCAGGAAGTACCAAGAA+TGG - chr3_4:15827023-15827042 Msa0492330:three_prime_UTR 50.0%
TCCATTATCGTTCGTCAGCG+TGG - chr3_4:15827110-15827129 Msa0492330:three_prime_UTR 50.0%
TCCACGCTGACGAACGATAA+TGG + chr3_4:15827114-15827133 None:intergenic 50.0%
!!! GTGCGTGTGTGAGTTTTAGG+TGG - chr3_4:15827454-15827473 Msa0492330:intron 50.0%
CGTGCATTTCCCCTCTGAAT+AGG - chr3_4:15827637-15827656 Msa0492330:intron 50.0%
GGCACAACTGAGGCACAATT+TGG - chr3_4:15827709-15827728 Msa0492330:intron 50.0%
! TCGGAACTGGTTCTTCTCGT+GGG + chr3_4:15828657-15828676 None:intergenic 50.0%
! TTCGGAACTGGTTCTTCTCG+TGG + chr3_4:15828658-15828677 None:intergenic 50.0%
AGGACATGTCACAGAGACAG+AGG + chr3_4:15829152-15829171 None:intergenic 50.0%
ACCCATGCATACAGCCATGG+TGG + chr3_4:15826838-15826857 None:intergenic 55.0%
TGAGGGGGAAGAGAGAGTGA+GGG + chr3_4:15826886-15826905 None:intergenic 55.0%
ATGAGGGGGAAGAGAGAGTG+AGG + chr3_4:15826887-15826906 None:intergenic 55.0%
AGCCGAGTCACGACCATTCT+TGG + chr3_4:15827039-15827058 None:intergenic 55.0%
! AAGAATGGTCGTGACTCGGC+TGG - chr3_4:15827038-15827057 Msa0492330:three_prime_UTR 55.0%
TGGAACCAGGTTTAGCGACC+TGG + chr3_4:15827094-15827113 None:intergenic 55.0%
!! CGCGGATTAAGGGTGCTGTT+AGG - chr3_4:15827594-15827613 Msa0492330:intron 55.0%
TAGCTATCGGGGTTCGGAAC+TGG + chr3_4:15828670-15828689 None:intergenic 55.0%
ACGGAAGCGAGCATTAGCTG+TGG + chr3_4:15828769-15828788 None:intergenic 55.0%
! ATGGTCGTGACTCGGCTGGA+AGG - chr3_4:15827042-15827061 Msa0492330:three_prime_UTR 60.0%
GGTGACCAGGTCGCTAAACC+TGG - chr3_4:15827086-15827105 Msa0492330:three_prime_UTR 60.0%
CGTTCGTCAGCGTGGAACCA+AGG - chr3_4:15827118-15827137 Msa0492330:three_prime_UTR 60.0%
CACACACGCACAACCGTGTG+AGG + chr3_4:15827445-15827464 None:intergenic 60.0%
!! GACTCGGCTGGAAGGCGTCT+CGG - chr3_4:15827050-15827069 Msa0492330:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 15826745 15829282 15826745 ID=Msa0492330;Name=Msa0492330
chr3_4 mRNA 15826745 15829282 15826745 ID=Msa0492330-mRNA-1;Parent=Msa0492330;Name=Msa0492330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=95|1|1|1|1|1|3|460|193
chr3_4 exon 15826745 15827384 15826745 ID=Msa0492330-mRNA-1:exon:4594;Parent=Msa0492330-mRNA-1
chr3_4 exon 15827475 15827576 15827475 ID=Msa0492330-mRNA-1:exon:4593;Parent=Msa0492330-mRNA-1
chr3_4 exon 15828888 15829282 15828888 ID=Msa0492330-mRNA-1:exon:4592;Parent=Msa0492330-mRNA-1
chr3_4 five_prime_UTR 15829188 15829282 15829188 ID=Msa0492330-mRNA-1:five_prime_utr;Parent=Msa0492330-mRNA-1
chr3_4 CDS 15828888 15829187 15828888 ID=Msa0492330-mRNA-1:cds;Parent=Msa0492330-mRNA-1
chr3_4 CDS 15827475 15827576 15827475 ID=Msa0492330-mRNA-1:cds;Parent=Msa0492330-mRNA-1
chr3_4 CDS 15827205 15827384 15827205 ID=Msa0492330-mRNA-1:cds;Parent=Msa0492330-mRNA-1
chr3_4 three_prime_UTR 15826745 15827204 15826745 ID=Msa0492330-mRNA-1:three_prime_utr;Parent=Msa0492330-mRNA-1
Gene Sequence

>Msa0492330

ATGGCTGTATGCATGGGTTTCAACATAGCAACAGCATTCAAATCCCTCACTCTCTCTTCCCCCTCATCTTCATCTTCATCTTCCTTTTTATCAGGTTCCACCACTCTTCGTATGACTCCATCAGTATCTCTCCCTCGAATTCATCATCGGTCAGCACTGATAATCCGGAATGCTCACAAGAAGGGAGCAGGAAGTACCAAGAATGGTCGTGACTCGGCTGGAAGGCGTCTCGGTGTTAAAGTTTATGGTGACCAGGTCGCTAAACCTGGTTCCATTATCGTTCGTCAGCGTGGAACCAAGTTTCACGCAGGAAAGAATGTAGGAATTGGCAAGGACCATACCATTTTCTCCCTAATTGATGGAGTTGTTAAATTTGAGAAATATGGACCTGACAAGAAAAAGATCAGTGTTTACCCACGAGAAGAACCAGTTCCGAACCCCGATAGCTATAGATTAAGGAAGATAGAGTACTTCAGGATGAGACGTGAACGCAAAAAGGCTGCTCAAGAAAGAAGAGCTTTTCAACCACAGCTAATGCTCGCTTCCGTTGATGATGCCGCAATAGAGAATCCAGATTGTTGA

Protein sequence

>Msa0492330

MAVCMGFNIATAFKSLTLSSPSSSSSSSFLSGSTTLRMTPSVSLPRIHHRSALIIRNAHKKGAGSTKNGRDSAGRRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGVVKFEKYGPDKKKISVYPREEPVPNPDSYRLRKIEYFRMRRERKKAAQERRAFQPQLMLASVDDAAIENPDC*