AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079630 MtrunA17_Chr7g0264881 99.187 123 1 0 1 123 1 123 8.69e-87 248
Msa1079630 MtrunA17_Chr6g0475331 95.161 124 5 1 1 123 1 124 4.46e-81 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079630 AT2G36835.1 65.000 120 40 1 4 123 7 124 9.37e-60 180

Find 53 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGAGAGTGATGAATTT+TGG 0.149153 7_2:-78865795 None:intergenic
AACATTGTTTGTATTGAATT+AGG 0.233406 7_2:+78868556 Msa1079630:three_prime_UTR
CTTAAGGCCAAGTAGTTTAA+TGG 0.275626 7_2:-78866042 None:intergenic
TGCAGCATCCAGACCCTATT+GGG 0.277417 7_2:+78865949 Msa1079630:intron
AGACCCTATTGGGGATGGTT+TGG 0.296622 7_2:+78865959 Msa1079630:CDS
GACCCTATTGGGGATGGTTT+GGG 0.297893 7_2:+78865960 Msa1079630:CDS
TCCCAAGCTGCTTGAGTTCT+CGG 0.339699 7_2:-78867361 None:intergenic
TTGCAGCATCCAGACCCTAT+TGG 0.343546 7_2:+78865948 Msa1079630:intron
TTCTGAGAAACGCGAAGAAT+TGG 0.346064 7_2:-78865812 None:intergenic
CATTAAACTACTTGGCCTTA+AGG 0.356280 7_2:+78866043 Msa1079630:CDS
TCATTCATAGATCGTTGATA+TGG 0.373253 7_2:+78868253 Msa1079630:exon
ACTGTCTTATATTACTCTCT+TGG 0.375174 7_2:-78868334 None:intergenic
TTAAGGCCAAGTAGTTTAAT+GGG 0.393226 7_2:-78866041 None:intergenic
CTTTGTGAAAGATGAAGATT+TGG 0.393654 7_2:+78868279 Msa1079630:three_prime_UTR
TCACCCAAACCATCCCCAAT+AGG 0.399609 7_2:-78865963 None:intergenic
GGAAATTGCATAATCTGAAA+AGG 0.409482 7_2:-78865837 None:intergenic
AGAATAAGAAAGAATAGATT+AGG 0.414715 7_2:+78865657 Msa1079630:five_prime_UTR
TGCTTGAGTTCTCGGCCAAT+TGG 0.417383 7_2:-78867353 None:intergenic
TGACCAGGTATGATGCATTC+AGG 0.426379 7_2:-78866011 None:intergenic
GCCGAGAACTCAAGCAGCTT+GGG 0.432988 7_2:+78867360 Msa1079630:CDS
CACCCAAACCATCCCCAATA+GGG 0.451205 7_2:-78865962 None:intergenic
CGTTTCAAAACGACGTGCCA+TGG 0.478244 7_2:+78865741 Msa1079630:CDS
AAACCATCCCCAATAGGGTC+TGG 0.478724 7_2:-78865957 None:intergenic
GGCCGAGAACTCAAGCAGCT+TGG 0.483388 7_2:+78867359 Msa1079630:CDS
TACAGAAGAAAGATGGGGCC+GGG 0.486911 7_2:-78868376 None:intergenic
AGAGAAGAGAAATTGAAAAG+TGG 0.490133 7_2:+78865574 Msa1079630:five_prime_UTR
AACAATGTTACGAGGGGTAC+AGG 0.490346 7_2:-78868542 None:intergenic
GTTACTCCCATTAAACTACT+TGG 0.493644 7_2:+78866035 Msa1079630:CDS
ACAGAAGAAAGATGGGGCCG+GGG 0.496539 7_2:-78868375 None:intergenic
GAAATTGCATAATCTGAAAA+GGG 0.505297 7_2:-78865836 None:intergenic
CATCTATGATGATGATATGT+TGG 0.509714 7_2:+78865613 Msa1079630:five_prime_UTR
TTGTTCTGTACTCGTTCCCC+CGG 0.512123 7_2:+78868358 Msa1079630:three_prime_UTR
AATGACGTACAGAAGAAAGA+TGG 0.527442 7_2:-78868383 None:intergenic
ATGACGTACAGAAGAAAGAT+GGG 0.537122 7_2:-78868382 None:intergenic
TTCATAGATCGTTGATATGG+TGG 0.543559 7_2:+78868256 Msa1079630:exon
AATTTCAGGTCAACTTCGAT+AGG 0.544920 7_2:-78867323 None:intergenic
AAAGAGAGATACCCTCATGA+TGG 0.547213 7_2:-78865858 None:intergenic
ATTATGCAATTTCCATCATG+AGG 0.549550 7_2:+78865846 Msa1079630:CDS
CATCCAGACCCTATTGGGGA+TGG 0.565712 7_2:+78865954 Msa1079630:CDS
GGTCCTGAATGCATCATACC+TGG 0.566073 7_2:+78866008 Msa1079630:CDS
GTACAGAAGAAAGATGGGGC+CGG 0.584922 7_2:-78868377 None:intergenic
CAGAAGAAAGATGGGGCCGG+GGG 0.585647 7_2:-78868374 None:intergenic
GACGCTATAGTTGAAGCAGC+TGG 0.589763 7_2:+78865987 Msa1079630:CDS
TTAATGGGAGTAACTTGACC+AGG 0.605934 7_2:-78866026 None:intergenic
CAATACAAACAATGTTACGA+GGG 0.610819 7_2:-78868549 None:intergenic
GAAGAAGATGAAGCTCTCCA+TGG 0.611826 7_2:-78865758 None:intergenic
GCAGCATCCAGACCCTATTG+GGG 0.632339 7_2:+78865950 Msa1079630:intron
AGAACTCAAGCAGCTTGGGA+AGG 0.633744 7_2:+78867364 Msa1079630:CDS
TTATGCAATTTCCATCATGA+GGG 0.641636 7_2:+78865847 Msa1079630:CDS
TCAATACAAACAATGTTACG+AGG 0.673776 7_2:-78868550 None:intergenic
GCAGGTCATGGATGACGCTG+TGG 0.682727 7_2:+78868216 Msa1079630:intron
AATACAAACAATGTTACGAG+GGG 0.697428 7_2:-78868548 None:intergenic
TGACGTACAGAAGAAAGATG+GGG 0.718721 7_2:-78868381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTTTTTTTTTTT+TGG + chr7_2:78865919-78865938 Msa1079630:intron 0.0%
!!! AATAGTTTACTTTTTTTTTT+TGG + chr7_2:78866638-78866657 Msa1079630:intron 10.0%
!! TAAGATTCAAAATATTCTTA+TGG - chr7_2:78866383-78866402 None:intergenic 15.0%
!!! TTGTAATTTTTAGTGAAAAT+AGG - chr7_2:78866935-78866954 None:intergenic 15.0%
!!! AAATTTCTAAAATAAAAGTG+TGG - chr7_2:78867860-78867879 None:intergenic 15.0%
!! AGAATAAGAAAGAATAGATT+AGG + chr7_2:78865657-78865676 Msa1079630:five_prime_UTR 20.0%
!! CAAAAATTGAAACAAGAAAT+AGG - chr7_2:78866071-78866090 None:intergenic 20.0%
!!! CATATTTGTTTAATGCTTTT+TGG + chr7_2:78866281-78866300 Msa1079630:intron 20.0%
!! TACTAATAACATATTCACAT+TGG + chr7_2:78866511-78866530 Msa1079630:intron 20.0%
!! ACTAATAACATATTCACATT+GGG + chr7_2:78866512-78866531 Msa1079630:intron 20.0%
!! AACAATTTCTTAAACCAAAT+AGG - chr7_2:78866898-78866917 None:intergenic 20.0%
!! AACTAAACATAAACTACAAT+GGG - chr7_2:78867189-78867208 None:intergenic 20.0%
!! AAACTAAACATAAACTACAA+TGG - chr7_2:78867190-78867209 None:intergenic 20.0%
!!! TAATATTAATGCTTCACTTT+TGG + chr7_2:78867214-78867233 Msa1079630:intron 20.0%
!!! TCTTTAGAAATACTTTGTTT+TGG + chr7_2:78867245-78867264 Msa1079630:intron 20.0%
!! AACATTGTTTGTATTGAATT+AGG + chr7_2:78868556-78868575 Msa1079630:three_prime_UTR 20.0%
! GAAATTGCATAATCTGAAAA+GGG - chr7_2:78865839-78865858 None:intergenic 25.0%
! GAAAACTTGAACGAAAATAA+TGG - chr7_2:78865896-78865915 None:intergenic 25.0%
!!! GTGATTTTTTATCTTCTCAA+TGG - chr7_2:78866361-78866380 None:intergenic 25.0%
!! TTTTGAATCTTACTGCAATT+TGG + chr7_2:78866391-78866410 Msa1079630:intron 25.0%
! CTAATAACATATTCACATTG+GGG + chr7_2:78866513-78866532 Msa1079630:intron 25.0%
! TAATAACATATTCACATTGG+GGG + chr7_2:78866514-78866533 Msa1079630:intron 25.0%
! AATCATACAACTCAAAAACT+TGG + chr7_2:78866790-78866809 Msa1079630:intron 25.0%
! TTCTTCAAATCTTTCAAAAC+AGG - chr7_2:78866984-78867003 None:intergenic 25.0%
! TCACATACATGATATCAAAA+GGG + chr7_2:78867053-78867072 Msa1079630:intron 25.0%
! ACATGAAAAGACATGATAAT+AGG - chr7_2:78867161-78867180 None:intergenic 25.0%
! ACTAAACATAAACTACAATG+GGG - chr7_2:78867188-78867207 None:intergenic 25.0%
!! CACTTCAACATTTTTCATTT+TGG + chr7_2:78867278-78867297 Msa1079630:intron 25.0%
!!! TTTTCATTTTGGCTTCTTAT+TGG + chr7_2:78867289-78867308 Msa1079630:intron 25.0%
! TATGTAGGTAAGATACAAAA+AGG - chr7_2:78867396-78867415 None:intergenic 25.0%
!! ATTTTCTATGCAAGTTATCT+AGG - chr7_2:78867524-78867543 None:intergenic 25.0%
!! GATAACTTGCATAGAAAATT+AGG + chr7_2:78867525-78867544 Msa1079630:intron 25.0%
! AAACAATCAATATTGCTACA+AGG + chr7_2:78867552-78867571 Msa1079630:intron 25.0%
!! TTTTTCATTCAAGGTAAACA+TGG - chr7_2:78867705-78867724 None:intergenic 25.0%
! ATAAATCACGATGTTGTTAA+AGG + chr7_2:78867771-78867790 Msa1079630:intron 25.0%
! ATAACACTATGGTAAAAGAT+AGG - chr7_2:78867806-78867825 None:intergenic 25.0%
!!! TGGATTTATTTATTTTTGCC+TGG + chr7_2:78868055-78868074 Msa1079630:intron 25.0%
! TATAACTGAAATTAACCAAC+CGG - chr7_2:78868082-78868101 None:intergenic 25.0%
! ATTAATATCAAAAGATGAGC+AGG - chr7_2:78868112-78868131 None:intergenic 25.0%
!! TGCTCATCTTTTGATATTAA+TGG + chr7_2:78868111-78868130 Msa1079630:intron 25.0%
AGAGAAGAGAAATTGAAAAG+TGG + chr7_2:78865574-78865593 Msa1079630:five_prime_UTR 30.0%
! CATCTATGATGATGATATGT+TGG + chr7_2:78865613-78865632 Msa1079630:five_prime_UTR 30.0%
! ATTGGAGAGTGATGAATTTT+GGG - chr7_2:78865797-78865816 None:intergenic 30.0%
! AATTGGAGAGTGATGAATTT+TGG - chr7_2:78865798-78865817 None:intergenic 30.0%
GGAAATTGCATAATCTGAAA+AGG - chr7_2:78865840-78865859 None:intergenic 30.0%
ATTATGCAATTTCCATCATG+AGG + chr7_2:78865846-78865865 Msa1079630:CDS 30.0%
TTATGCAATTTCCATCATGA+GGG + chr7_2:78865847-78865866 Msa1079630:CDS 30.0%
TTAAGGCCAAGTAGTTTAAT+GGG - chr7_2:78866044-78866063 None:intergenic 30.0%
AACAAGAAATAGGTACCTTA+AGG - chr7_2:78866061-78866080 None:intergenic 30.0%
CATAATTCAATGTAACTGCA+TGG + chr7_2:78866196-78866215 Msa1079630:intron 30.0%
!! GTTTAATGCTTTTTGGATCA+TGG + chr7_2:78866288-78866307 Msa1079630:intron 30.0%
! ACTAAAACCATGAAGCATTT+AGG - chr7_2:78866332-78866351 None:intergenic 30.0%
GTTATTAGTACGAACAAACA+AGG - chr7_2:78866501-78866520 None:intergenic 30.0%
TTTCCGTTGTTCAATTATCA+GGG - chr7_2:78866726-78866745 None:intergenic 30.0%
ATTTCCGTTGTTCAATTATC+AGG - chr7_2:78866727-78866746 None:intergenic 30.0%
TGATAATTGAACAACGGAAA+TGG + chr7_2:78866726-78866745 Msa1079630:intron 30.0%
!! TGCTTGATGGTATTGATATT+TGG - chr7_2:78866766-78866785 None:intergenic 30.0%
AATTTGTCCTCTCAAATTTG+CGG + chr7_2:78866837-78866856 Msa1079630:intron 30.0%
AATAGGTCTTGAGATTGATA+AGG - chr7_2:78866881-78866900 None:intergenic 30.0%
TATCAATCTCAAGACCTATT+TGG + chr7_2:78866881-78866900 Msa1079630:intron 30.0%
CTCACATACATGATATCAAA+AGG + chr7_2:78867052-78867071 Msa1079630:intron 30.0%
TGAAAAGACATGATAATAGG+AGG - chr7_2:78867158-78867177 None:intergenic 30.0%
CTAAACATAAACTACAATGG+GGG - chr7_2:78867187-78867206 None:intergenic 30.0%
! CAATTGGTTCCAAAAATTTC+AGG - chr7_2:78867340-78867359 None:intergenic 30.0%
!!! CTGAAATTTTTGGAACCAAT+TGG + chr7_2:78867338-78867357 Msa1079630:CDS 30.0%
TTGTATCTTACCTACATACA+AGG + chr7_2:78867398-78867417 Msa1079630:intron 30.0%
TGTATCTTACCTACATACAA+GGG + chr7_2:78867399-78867418 Msa1079630:intron 30.0%
! TATATGTGCCCTTGTATTTT+TGG + chr7_2:78867579-78867598 Msa1079630:intron 30.0%
CTCCATTTCCAAAAATACAA+GGG - chr7_2:78867590-78867609 None:intergenic 30.0%
TCTCCATTTCCAAAAATACA+AGG - chr7_2:78867591-78867610 None:intergenic 30.0%
!! TTTGCTACTTTGTTATCACA+AGG - chr7_2:78867631-78867650 None:intergenic 30.0%
! TCAAGGTAAACATGGTATTT+TGG - chr7_2:78867697-78867716 None:intergenic 30.0%
CAGTGAATTTGCAAATATGT+TGG + chr7_2:78867914-78867933 Msa1079630:intron 30.0%
! CAACAAAAGCATAGAACAAT+GGG - chr7_2:78867966-78867985 None:intergenic 30.0%
! TCAACAAAAGCATAGAACAA+TGG - chr7_2:78867967-78867986 None:intergenic 30.0%
ATAACTGAAATTAACCAACC+GGG - chr7_2:78868081-78868100 None:intergenic 30.0%
TCATTCATAGATCGTTGATA+TGG + chr7_2:78868253-78868272 Msa1079630:exon 30.0%
CTTTGTGAAAGATGAAGATT+TGG + chr7_2:78868279-78868298 Msa1079630:three_prime_UTR 30.0%
ACTGTCTTATATTACTCTCT+TGG - chr7_2:78868337-78868356 None:intergenic 30.0%
AATACAAACAATGTTACGAG+GGG - chr7_2:78868551-78868570 None:intergenic 30.0%
CAATACAAACAATGTTACGA+GGG - chr7_2:78868552-78868571 None:intergenic 30.0%
TCAATACAAACAATGTTACG+AGG - chr7_2:78868553-78868572 None:intergenic 30.0%
!! GAGTGATGAATTTTGGGTAT+TGG - chr7_2:78865791-78865810 None:intergenic 35.0%
GTTACTCCCATTAAACTACT+TGG + chr7_2:78866035-78866054 Msa1079630:CDS 35.0%
CTTAAGGCCAAGTAGTTTAA+TGG - chr7_2:78866045-78866064 None:intergenic 35.0%
!! CATTAAACTACTTGGCCTTA+AGG + chr7_2:78866043-78866062 Msa1079630:CDS 35.0%
AAGCACAGACACATACAATA+CGG + chr7_2:78866139-78866158 Msa1079630:intron 35.0%
AGTTGTTCCTAAATGCTTCA+TGG + chr7_2:78866322-78866341 Msa1079630:intron 35.0%
GTCTATGAAAACCATGAAGA+AGG + chr7_2:78866442-78866461 Msa1079630:intron 35.0%
! GAACAAACAAGGATTTTGCT+AGG - chr7_2:78866490-78866509 None:intergenic 35.0%
! TACTTTTAACGAAGTAGCAG+CGG - chr7_2:78866576-78866595 None:intergenic 35.0%
!!! TTTTTGGTGTTTGTGATTGC+TGG + chr7_2:78866654-78866673 Msa1079630:intron 35.0%
TTCCCCTGATAATTGAACAA+CGG + chr7_2:78866720-78866739 Msa1079630:intron 35.0%
TTCCGTTGTTCAATTATCAG+GGG - chr7_2:78866725-78866744 None:intergenic 35.0%
TGTATGATTACTGTGCTTGA+TGG - chr7_2:78866779-78866798 None:intergenic 35.0%
ATTTGTCCTCTCAAATTTGC+GGG + chr7_2:78866838-78866857 Msa1079630:intron 35.0%
GGAAACAAAGTGAAACAAGA+TGG - chr7_2:78866963-78866982 None:intergenic 35.0%
CATACATGATATCAAAAGGG+TGG + chr7_2:78867056-78867075 Msa1079630:intron 35.0%
AAAGACATGATAATAGGAGG+AGG - chr7_2:78867155-78867174 None:intergenic 35.0%
!!! TTTTGGCTTCTTATTGGAAC+AGG + chr7_2:78867295-78867314 Msa1079630:intron 35.0%
! AATTTCAGGTCAACTTCGAT+AGG - chr7_2:78867326-78867345 None:intergenic 35.0%
! CGAAGTTGACCTGAAATTTT+TGG + chr7_2:78867328-78867347 Msa1079630:CDS 35.0%
CCAATATTACCCTTGTATGT+AGG - chr7_2:78867411-78867430 None:intergenic 35.0%
CCTACATACAAGGGTAATAT+TGG + chr7_2:78867408-78867427 Msa1079630:intron 35.0%
!!! TGCCCTTGTATTTTTGGAAA+TGG + chr7_2:78867585-78867604 Msa1079630:intron 35.0%
!!! TGCTGTTGGTTTTTCATTCA+AGG - chr7_2:78867714-78867733 None:intergenic 35.0%
!! TCAATTTGCTACAATGCTGT+TGG - chr7_2:78867728-78867747 None:intergenic 35.0%
ATCACGATGTTGTTAAAGGT+CGG + chr7_2:78867775-78867794 Msa1079630:intron 35.0%
GCAAAGTCTACATAACACTA+TGG - chr7_2:78867817-78867836 None:intergenic 35.0%
TGGATTTGAATGCTTAGAGT+TGG + chr7_2:78867934-78867953 Msa1079630:intron 35.0%
!!! TTATTTATTTTTGCCTGGCC+CGG + chr7_2:78868060-78868079 Msa1079630:intron 35.0%
TTAGAATTGCATGTCTGAAC+TGG - chr7_2:78868153-78868172 None:intergenic 35.0%
TTCATAGATCGTTGATATGG+TGG + chr7_2:78868256-78868275 Msa1079630:exon 35.0%
ATGACGTACAGAAGAAAGAT+GGG - chr7_2:78868385-78868404 None:intergenic 35.0%
AATGACGTACAGAAGAAAGA+TGG - chr7_2:78868386-78868405 None:intergenic 35.0%
! TTCTGAGAAACGCGAAGAAT+TGG - chr7_2:78865815-78865834 None:intergenic 40.0%
AAAGAGAGATACCCTCATGA+TGG - chr7_2:78865861-78865880 None:intergenic 40.0%
TTAATGGGAGTAACTTGACC+AGG - chr7_2:78866029-78866048 None:intergenic 40.0%
CTGTGCTTCATAGTTGAAAC+AGG - chr7_2:78866127-78866146 None:intergenic 40.0%
ACACATACAATACGGACATG+TGG + chr7_2:78866147-78866166 Msa1079630:intron 40.0%
TCAATGTAACTGCATGGTGT+CGG + chr7_2:78866202-78866221 Msa1079630:intron 40.0%
!! AGCACGACACTTTTGATTGA+AGG - chr7_2:78866260-78866279 None:intergenic 40.0%
CATATGTGCAACCTTCTTCA+TGG - chr7_2:78866456-78866475 None:intergenic 40.0%
! GCTGCTACTTCGTTAAAAGT+AGG + chr7_2:78866575-78866594 Msa1079630:intron 40.0%
GAATATCCCGCAAATTTGAG+AGG - chr7_2:78866847-78866866 None:intergenic 40.0%
!!! AGGGTGGTCATTTTTGTAAC+AGG + chr7_2:78867072-78867091 Msa1079630:intron 40.0%
!!! GGGTGGTCATTTTTGTAACA+GGG + chr7_2:78867073-78867092 Msa1079630:intron 40.0%
!!! GGTGGTCATTTTTGTAACAG+GGG + chr7_2:78867074-78867093 Msa1079630:intron 40.0%
! AGGAGGAAAAACAGCATTGA+TGG - chr7_2:78867138-78867157 None:intergenic 40.0%
!! CACTTGATAGTGATGAACTG+TGG + chr7_2:78867466-78867485 Msa1079630:intron 40.0%
! ATATCGCTGTTGCTTGTGTT+TGG + chr7_2:78868035-78868054 Msa1079630:intron 40.0%
!! TGTAGTTATTTTGTGCACGC+AGG + chr7_2:78868198-78868217 Msa1079630:intron 40.0%
TGGAAAAATGTAAGCGAGAC+TGG - chr7_2:78868317-78868336 None:intergenic 40.0%
TGACGTACAGAAGAAAGATG+GGG - chr7_2:78868384-78868403 None:intergenic 40.0%
GAAGAAGATGAAGCTCTCCA+TGG - chr7_2:78865761-78865780 None:intergenic 45.0%
TGACCAGGTATGATGCATTC+AGG - chr7_2:78866014-78866033 None:intergenic 45.0%
ATTCACATTGGGGGAATGTC+TGG + chr7_2:78866523-78866542 Msa1079630:intron 45.0%
GCTTCTTATTGGAACAGGTC+TGG + chr7_2:78867300-78867319 Msa1079630:intron 45.0%
GGGTAATATTGGCACACTTC+TGG + chr7_2:78867419-78867438 Msa1079630:intron 45.0%
GGATTTGTGAGCAAAGCAAC+TGG - chr7_2:78867839-78867858 None:intergenic 45.0%
CATGTCTGAACTGGAGATGT+CGG - chr7_2:78868144-78868163 None:intergenic 45.0%
! TATTTTGTGCACGCAGGTCA+TGG + chr7_2:78868204-78868223 Msa1079630:intron 45.0%
! AACAATGTTACGAGGGGTAC+AGG - chr7_2:78868545-78868564 None:intergenic 45.0%
CGTTTCAAAACGACGTGCCA+TGG + chr7_2:78865741-78865760 Msa1079630:CDS 50.0%
TTGCAGCATCCAGACCCTAT+TGG + chr7_2:78865948-78865967 Msa1079630:intron 50.0%
TGCAGCATCCAGACCCTATT+GGG + chr7_2:78865949-78865968 Msa1079630:intron 50.0%
AAACCATCCCCAATAGGGTC+TGG - chr7_2:78865960-78865979 None:intergenic 50.0%
AGACCCTATTGGGGATGGTT+TGG + chr7_2:78865959-78865978 Msa1079630:CDS 50.0%
GACCCTATTGGGGATGGTTT+GGG + chr7_2:78865960-78865979 Msa1079630:CDS 50.0%
CACCCAAACCATCCCCAATA+GGG - chr7_2:78865965-78865984 None:intergenic 50.0%
TCACCCAAACCATCCCCAAT+AGG - chr7_2:78865966-78865985 None:intergenic 50.0%
GACGCTATAGTTGAAGCAGC+TGG + chr7_2:78865987-78866006 Msa1079630:CDS 50.0%
GGTCCTGAATGCATCATACC+TGG + chr7_2:78866008-78866027 Msa1079630:CDS 50.0%
AGTAGCAGCGGTCGAGATTT+AGG - chr7_2:78866564-78866583 None:intergenic 50.0%
TGCTTGAGTTCTCGGCCAAT+TGG - chr7_2:78867356-78867375 None:intergenic 50.0%
TCCCAAGCTGCTTGAGTTCT+CGG - chr7_2:78867364-78867383 None:intergenic 50.0%
AGAACTCAAGCAGCTTGGGA+AGG + chr7_2:78867364-78867383 Msa1079630:CDS 50.0%
!!! TTATTTTTGCCTGGCCCGGT+TGG + chr7_2:78868064-78868083 Msa1079630:intron 50.0%
TGAAATTAACCAACCGGGCC+AGG - chr7_2:78868076-78868095 None:intergenic 50.0%
TTGTTCTGTACTCGTTCCCC+CGG + chr7_2:78868358-78868377 Msa1079630:three_prime_UTR 50.0%
TACAGAAGAAAGATGGGGCC+GGG - chr7_2:78868379-78868398 None:intergenic 50.0%
GTACAGAAGAAAGATGGGGC+CGG - chr7_2:78868380-78868399 None:intergenic 50.0%
GCAGCATCCAGACCCTATTG+GGG + chr7_2:78865950-78865969 Msa1079630:intron 55.0%
CATCCAGACCCTATTGGGGA+TGG + chr7_2:78865954-78865973 Msa1079630:CDS 55.0%
AGTGTCCGACACACGCTACA+CGG - chr7_2:78866231-78866250 None:intergenic 55.0%
CACATTGGGGGAATGTCTGG+TGG + chr7_2:78866526-78866545 Msa1079630:intron 55.0%
ATTGGGGGAATGTCTGGTGG+CGG + chr7_2:78866529-78866548 Msa1079630:intron 55.0%
GCCGAGAACTCAAGCAGCTT+GGG + chr7_2:78867360-78867379 Msa1079630:CDS 55.0%
ACAGAAGAAAGATGGGGCCG+GGG - chr7_2:78868378-78868397 None:intergenic 55.0%
GGTGTCCGTGTAGCGTGTGT+CGG + chr7_2:78866223-78866242 Msa1079630:intron 60.0%
GTGTAGCGTGTGTCGGACAC+TGG + chr7_2:78866230-78866249 Msa1079630:intron 60.0%
GGCCGAGAACTCAAGCAGCT+TGG + chr7_2:78867359-78867378 Msa1079630:CDS 60.0%
GCAGGTCATGGATGACGCTG+TGG + chr7_2:78868216-78868235 Msa1079630:intron 60.0%
CAGAAGAAAGATGGGGCCGG+GGG - chr7_2:78868377-78868396 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78865548 78868593 78865548 ID=Msa1079630;Name=Msa1079630
chr7_2 mRNA 78865548 78868593 78865548 ID=Msa1079630-mRNA-1;Parent=Msa1079630;Name=Msa1079630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=180|1|1|1|1|1|4|323|123
chr7_2 exon 78865548 78865868 78865548 ID=Msa1079630-mRNA-1:exon:19641;Parent=Msa1079630-mRNA-1
chr7_2 exon 78865954 78866064 78865954 ID=Msa1079630-mRNA-1:exon:19642;Parent=Msa1079630-mRNA-1
chr7_2 exon 78867317 78867385 78867317 ID=Msa1079630-mRNA-1:exon:19643;Parent=Msa1079630-mRNA-1
chr7_2 exon 78868220 78868593 78868220 ID=Msa1079630-mRNA-1:exon:19644;Parent=Msa1079630-mRNA-1
chr7_2 five_prime_UTR 78865548 78865727 78865548 ID=Msa1079630-mRNA-1:five_prime_utr;Parent=Msa1079630-mRNA-1
chr7_2 CDS 78865728 78865868 78865728 ID=Msa1079630-mRNA-1:cds;Parent=Msa1079630-mRNA-1
chr7_2 CDS 78865954 78866064 78865954 ID=Msa1079630-mRNA-1:cds;Parent=Msa1079630-mRNA-1
chr7_2 CDS 78867317 78867385 78867317 ID=Msa1079630-mRNA-1:cds;Parent=Msa1079630-mRNA-1
chr7_2 CDS 78868220 78868270 78868220 ID=Msa1079630-mRNA-1:cds;Parent=Msa1079630-mRNA-1
chr7_2 three_prime_UTR 78868271 78868593 78868271 ID=Msa1079630-mRNA-1:three_prime_utr;Parent=Msa1079630-mRNA-1
Gene Sequence

>Msa1079630

ATGTCGAAGAGTTCGTTTCAAAACGACGTGCCATGGAGAGCTTCATCTTCTTCAGCAAAACCAATACCCAAAATTCATCACTCTCCAATTCTTCGCGTTTCTCAGAATCCCTTTTCAGATTATGCAATTTCCATCATGAGGCATCCAGACCCTATTGGGGATGGTTTGGGTGATGACGCTATAGTTGAAGCAGCTGGTCCTGAATGCATCATACCTGGTCAAGTTACTCCCATTAAACTACTTGGCCTTAAGGTCTGGCCTATCGAAGTTGACCTGAAATTTTTGGAACCAATTGGCCGAGAACTCAAGCAGCTTGGGAAGGTCATGGATGACGCTGTGGAACTTATGAACAAATCATTCATAGATCGTTGA

Protein sequence

>Msa1079630

MSKSSFQNDVPWRASSSSAKPIPKIHHSPILRVSQNPFSDYAISIMRHPDPIGDGLGDDAIVEAAGPECIIPGQVTPIKLLGLKVWPIEVDLKFLEPIGRELKQLGKVMDDAVELMNKSFIDR*