AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177640 MtrunA17_Chr1g0200581 95.283 212 10 0 1 212 1 212 3.30e-133 372
Msa0177640 MtrunA17_Chr7g0271521 50.476 105 52 0 93 197 161 265 9.65e-22 90.5
Msa0177640 MtrunA17_Chr2g0307701 50.476 105 52 0 93 197 71 175 1.01e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177640 AT1G35680.1 50.893 224 91 7 1 209 1 220 9.13e-54 172
Msa0177640 AT4G30930.1 46.429 112 59 1 92 202 140 251 6.36e-22 90.9

Find 70 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATGGACGATATAAATT+TGG 0.192854 1_4:-64737206 Msa0177640:CDS
TTATCATGGTTGGAGTTATT+TGG 0.215470 1_4:-64737088 Msa0177640:three_prime_UTR
CATCCGGATTAATAGCATTA+TGG 0.235579 1_4:-64737251 Msa0177640:CDS
AACAGCAGATTCAGTGGATT+TGG 0.261606 1_4:+64739156 None:intergenic
CTGGAAAATAGCAATGTATT+TGG 0.269474 1_4:+64737018 None:intergenic
ATATCGTCCATAGTAACTTT+TGG 0.287859 1_4:+64737214 None:intergenic
AAGTTCTCTCTTGTTCAAAA+TGG 0.296593 1_4:-64739347 Msa0177640:exon
GGTTTGTAAGAGTAAATAAA+TGG 0.298935 1_4:-64739414 Msa0177640:five_prime_UTR
GTAGGAATTGGAGTGATAAT+TGG 0.305973 1_4:+64736992 None:intergenic
CCTTGCATTGAAAGATTTGT+TGG 0.311869 1_4:-64736921 Msa0177640:three_prime_UTR
TTAATCCGGATGCGTGTATT+TGG 0.315023 1_4:+64737262 None:intergenic
TGGCTCTTCATAGTAGGAAT+TGG 0.377287 1_4:+64736980 None:intergenic
ATCCGGATTAATAGCATTAT+GGG 0.377731 1_4:-64737250 Msa0177640:CDS
ACAGCAGATTCAGTGGATTT+GGG 0.380963 1_4:+64739157 None:intergenic
AAATTGTTCAGTCTCCTTCA+TGG 0.399185 1_4:-64739087 Msa0177640:CDS
AGTAACAATTCAAAGTAAAC+TGG 0.405990 1_4:+64736960 None:intergenic
AAGCACTATCGTAGAACTAT+TGG 0.411527 1_4:-64737560 Msa0177640:CDS
ACTTGAGAGTCAGGCTCAAC+AGG 0.412202 1_4:+64739130 None:intergenic
GATTCAGTGGATTTGGGAAC+GGG 0.427167 1_4:+64739163 None:intergenic
GGACTACCCAAAAGTTACTA+TGG 0.431208 1_4:-64737221 Msa0177640:CDS
GACTCCGACACTTGAGAGTC+AGG 0.434639 1_4:+64739121 None:intergenic
ACCACAGCATTTGTTACTAC+TGG 0.436337 1_4:+64737738 None:intergenic
AGAGGATAGAGTTGAGAGAG+AGG 0.436596 1_4:-64739370 Msa0177640:five_prime_UTR
TACTGGTTTGCCAATGTAGC+AGG 0.447272 1_4:+64737755 None:intergenic
GTAAATAAATGGATAGGAAG+AGG 0.447418 1_4:-64739403 Msa0177640:five_prime_UTR
GTAAACTGGCTCTTCATAGT+AGG 0.453324 1_4:+64736974 None:intergenic
ATTGTAGATCGCCCTGCATA+AGG 0.455809 1_4:-64737802 Msa0177640:intron
AGCCCATAATGCTATTAATC+CGG 0.468527 1_4:+64737248 None:intergenic
TGAACAACAAGCCAGCGGCC+AGG 0.470564 1_4:+64738414 None:intergenic
ACAGATACATCCTGCTACAT+TGG 0.471048 1_4:-64737765 Msa0177640:CDS
CTTGTTGTTCAGAGGCTCAA+AGG 0.473982 1_4:-64738402 Msa0177640:CDS
GGAAGAGGAAGAACATAAAG+AGG 0.475604 1_4:-64739388 Msa0177640:five_prime_UTR
AATTGTTCAGTCTCCTTCAT+GGG 0.484994 1_4:-64739086 Msa0177640:CDS
GAACAACAAGCCAGCGGCCA+GGG 0.488250 1_4:+64738415 None:intergenic
TTGAGGCTTTGTTGAACAAT+GGG 0.491609 1_4:+64739276 None:intergenic
CAGTCTCCTTCATGGGAGAA+AGG 0.493689 1_4:-64739079 Msa0177640:CDS
TTGGAGTGATAATTGGAGAC+TGG 0.496604 1_4:+64736999 None:intergenic
GTATGCGACAGTTGAAGATC+AGG 0.505346 1_4:-64737715 Msa0177640:intron
CAACCAGTAAAACCTTATGC+AGG 0.515174 1_4:+64737790 None:intergenic
GCCGCTGGCTTGTTGTTCAG+AGG 0.515615 1_4:-64738410 Msa0177640:CDS
TGATGAGAAATAGAGAATTG+AGG 0.517104 1_4:+64739259 None:intergenic
ATATTGTTCACCCTGGCCGC+TGG 0.519617 1_4:-64738425 Msa0177640:CDS
TGGAAAGAGAGGTTGTGAGA+AGG 0.523157 1_4:+64739217 None:intergenic
TAATAGCATTATGGGCTATG+AGG 0.523959 1_4:-64737242 Msa0177640:CDS
CCAACAAATCTTTCAATGCA+AGG 0.529118 1_4:+64736921 None:intergenic
AGGCAAGCGTTGTGAGAAAG+TGG 0.533199 1_4:+64739192 None:intergenic
TGTGAAAGAAGAACAGAGAG+TGG 0.542220 1_4:+64739300 None:intergenic
ATTGAGGCTTTGTTGAACAA+TGG 0.545857 1_4:+64739275 None:intergenic
GACAGCCAAATACACGCATC+CGG 0.549802 1_4:-64737267 Msa0177640:intron
TTGTGAGAAGGAACACGAGA+AGG 0.551095 1_4:+64739229 None:intergenic
AAAAGACCTTTCTCCCATGA+AGG 0.553345 1_4:+64739073 None:intergenic
GTAAGAGTAAATAAATGGAT+AGG 0.553474 1_4:-64739409 Msa0177640:five_prime_UTR
AGATTCAGTGGATTTGGGAA+CGG 0.556307 1_4:+64739162 None:intergenic
TAGAACTATTGGACACAGAC+AGG 0.559882 1_4:-64737549 Msa0177640:intron
TATTAGCAATCAATTTGCCA+TGG 0.562758 1_4:-64737123 Msa0177640:three_prime_UTR
AGCGTTGTGAGAAAGTGGAT+TGG 0.591056 1_4:+64739197 None:intergenic
AGGTGCAACAGCAGATTCAG+TGG 0.593123 1_4:+64739150 None:intergenic
GATAAAAGCAAAACTAACCA+TGG 0.603723 1_4:+64737106 None:intergenic
TGTGAGAAGGAACACGAGAA+GGG 0.611777 1_4:+64739230 None:intergenic
AGAAAGTGGATTGGAAAGAG+AGG 0.617691 1_4:+64739206 None:intergenic
TGAGCCTGACTCTCAAGTGT+CGG 0.618629 1_4:-64739125 Msa0177640:CDS
AACCAGTAAAACCTTATGCA+GGG 0.620022 1_4:+64737791 None:intergenic
GTATACCTTGTCGTTAACGT+TGG 0.621234 1_4:+64738377 None:intergenic
GAAGGAACACGAGAAGGGAA+AGG 0.624230 1_4:+64739235 None:intergenic
ACCAGTAGTAACAAATGCTG+TGG 0.630774 1_4:-64737739 Msa0177640:CDS
AGGAGACTGAACAATTTGAG+AGG 0.639275 1_4:+64739093 None:intergenic
AGGTGCCAACGTTAACGACA+AGG 0.654570 1_4:-64738382 Msa0177640:intron
GCCTCTGAACAACAAGCCAG+CGG 0.664752 1_4:+64738409 None:intergenic
CGTCAATATATTGTTCACCC+TGG 0.666038 1_4:-64738432 Msa0177640:CDS
GATTTGGGAACGGGTAACAG+AGG 0.673707 1_4:+64739172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGTTAGTAAAATAAAA+GGG - chr1_4:64737701-64737720 Msa0177640:intron 10.0%
!!! ATACAATATATTTAAAACTA+TGG - chr1_4:64738171-64738190 Msa0177640:intron 10.0%
!! CTATAAATATAGATATAAAA+GGG - chr1_4:64738331-64738350 Msa0177640:intron 10.0%
!! ATATAAAATAGATAAAACCA+TGG + chr1_4:64737445-64737464 None:intergenic 15.0%
!! AGTTCAAAAATATAGAATAT+AGG + chr1_4:64737624-64737643 None:intergenic 15.0%
!!! ATATTCTATATTTTTGAACT+TGG - chr1_4:64737624-64737643 Msa0177640:intron 15.0%
!!! TATTCTATATTTTTGAACTT+GGG - chr1_4:64737625-64737644 Msa0177640:intron 15.0%
!! CAATTAGTTAGTAAAATAAA+AGG - chr1_4:64737700-64737719 Msa0177640:intron 15.0%
!!! CCTTTTATATCTATATTTAT+AGG + chr1_4:64738333-64738352 None:intergenic 15.0%
!! CCTATAAATATAGATATAAA+AGG - chr1_4:64738330-64738349 Msa0177640:intron 15.0%
!! AAAGTATATTATAAGAAACT+AGG - chr1_4:64738363-64738382 Msa0177640:intron 15.0%
!!! GAAAAGTTTTGATAAATAAT+TGG + chr1_4:64738827-64738846 None:intergenic 15.0%
!! TTTGAACAATTCAAACAAAA+GGG + chr1_4:64737334-64737353 None:intergenic 20.0%
!!! TTTTGAACAATTCAAACAAA+AGG + chr1_4:64737335-64737354 None:intergenic 20.0%
!! TGTTAATATAGATTGTTCTA+TGG - chr1_4:64737376-64737395 Msa0177640:intron 20.0%
!! AAAAATATGCAAACTCAATT+GGG + chr1_4:64737412-64737431 None:intergenic 20.0%
!! CAAAAATATAGAATATAGGT+TGG + chr1_4:64737620-64737639 None:intergenic 20.0%
!!! TAGGTATTTGTTTATTGTTT+TGG - chr1_4:64737790-64737809 Msa0177640:CDS 20.0%
!! GCTAATCATTACTTAATAAA+TGG + chr1_4:64738145-64738164 None:intergenic 20.0%
!!! AATATATTTAAAACTATGGC+TGG - chr1_4:64738175-64738194 Msa0177640:intron 20.0%
!!! TGTACATTAATTTTAACTCT+TGG - chr1_4:64738496-64738515 Msa0177640:intron 20.0%
!! AACATTCATAAAAAATGACA+TGG + chr1_4:64738993-64739012 None:intergenic 20.0%
!!! TGTCATTTTTTATGAATGTT+TGG - chr1_4:64738993-64739012 Msa0177640:intron 20.0%
! GGTTTGTAAGAGTAAATAAA+TGG - chr1_4:64736908-64736927 Msa0177640:three_prime_UTR 25.0%
! GTAAGAGTAAATAAATGGAT+AGG - chr1_4:64736913-64736932 Msa0177640:three_prime_UTR 25.0%
! CAAAAATATGCAAACTCAAT+TGG + chr1_4:64737413-64737432 None:intergenic 25.0%
!! CAATTGAGTTTGCATATTTT+TGG - chr1_4:64737411-64737430 Msa0177640:intron 25.0%
! TTAGGAATGGTTAAGTAAAA+TGG - chr1_4:64737517-64737536 Msa0177640:intron 25.0%
! TAGGAATGGTTAAGTAAAAT+GGG - chr1_4:64737518-64737537 Msa0177640:intron 25.0%
!! ACTAATTGATTTAGCTTAAG+CGG + chr1_4:64737688-64737707 None:intergenic 25.0%
!!! GTAAAATAAAAGGGTTAGTT+TGG - chr1_4:64737710-64737729 Msa0177640:intron 25.0%
!! TAAACTGTTGTTTGTATTGT+TGG - chr1_4:64737739-64737758 Msa0177640:CDS 25.0%
!! AAACTGTTGTTTGTATTGTT+GGG - chr1_4:64737740-64737759 Msa0177640:CDS 25.0%
! GAAATAATGAGTTTAACGAA+TGG + chr1_4:64738042-64738061 None:intergenic 25.0%
! TATGGTTAAAATACCTCTTT+AGG + chr1_4:64738389-64738408 None:intergenic 25.0%
! TAAAACAAAATGGTTAAGGT+AGG + chr1_4:64738694-64738713 None:intergenic 25.0%
! GCATTAAAACAAAATGGTTA+AGG + chr1_4:64738698-64738717 None:intergenic 25.0%
!!! TAACCATTTTGTTTTAATGC+AGG - chr1_4:64738698-64738717 Msa0177640:intron 25.0%
!!! AACCATTTTGTTTTAATGCA+GGG - chr1_4:64738699-64738718 Msa0177640:intron 25.0%
! TAATTGGATTGCAAAGTAAA+AGG + chr1_4:64738811-64738830 None:intergenic 25.0%
!! TTTATGAATGTTTGGTTTAC+CGG - chr1_4:64739001-64739020 Msa0177640:intron 25.0%
! TCAAATCAAACATGAAATTC+CGG + chr1_4:64739023-64739042 None:intergenic 25.0%
! TACTATGGACGATATAAATT+TGG - chr1_4:64739116-64739135 Msa0177640:CDS 25.0%
! AGTAACAATTCAAAGTAAAC+TGG + chr1_4:64739365-64739384 None:intergenic 25.0%
GTAAATAAATGGATAGGAAG+AGG - chr1_4:64736919-64736938 Msa0177640:three_prime_UTR 30.0%
AAGTTCTCTCTTGTTCAAAA+TGG - chr1_4:64736975-64736994 Msa0177640:three_prime_UTR 30.0%
TGATGAGAAATAGAGAATTG+AGG + chr1_4:64737066-64737085 None:intergenic 30.0%
!!! GCTTTTTTGAATTTTGAGTG+TGG - chr1_4:64737299-64737318 Msa0177640:intron 30.0%
!! TTTGAATTTTGAGTGTGGAT+TGG - chr1_4:64737304-64737323 Msa0177640:intron 30.0%
!! TTGAATTTTGAGTGTGGATT+GGG - chr1_4:64737305-64737324 Msa0177640:intron 30.0%
AGTATTGCACATTCAAGATT+AGG - chr1_4:64737499-64737518 Msa0177640:intron 30.0%
GACAGACTTTACTTATGTTT+CGG + chr1_4:64737586-64737605 None:intergenic 30.0%
! ATATAGGTTGGAACAATCAT+TGG + chr1_4:64737608-64737627 None:intergenic 30.0%
TCAATTATGGACGAATCATT+CGG + chr1_4:64737656-64737675 None:intergenic 30.0%
GCGGTTAATAAACTCAATTA+TGG + chr1_4:64737669-64737688 None:intergenic 30.0%
!! AATAAAAGGGTTAGTTTGGA+TGG - chr1_4:64737714-64737733 Msa0177640:intron 30.0%
!!! TTGTGTTGTTTTGTCTAGAT+TGG - chr1_4:64737863-64737882 Msa0177640:intron 30.0%
ATAAGTGCAACATGTCAAAA+TGG + chr1_4:64737994-64738013 None:intergenic 30.0%
!! AATTTTAGAGGCAGTGTTTA+GGG + chr1_4:64738118-64738137 None:intergenic 30.0%
! ATAAATGGCAGCAATTTTAG+AGG + chr1_4:64738130-64738149 None:intergenic 30.0%
CATTCATTTCTCACATCATA+TGG + chr1_4:64738407-64738426 None:intergenic 30.0%
AACAGCAAATGTTCAGATAA+TGG + chr1_4:64738452-64738471 None:intergenic 30.0%
!!! TACTTTTAGCTTTTCCTAAC+AGG + chr1_4:64738661-64738680 None:intergenic 30.0%
AACCCTGCATTAAAACAAAA+TGG + chr1_4:64738704-64738723 None:intergenic 30.0%
TTACCCTTAAACTTTCTGAA+AGG - chr1_4:64738901-64738920 Msa0177640:intron 30.0%
TGAAAGGAGCTTAGAAATAT+GGG - chr1_4:64738917-64738936 Msa0177640:intron 30.0%
ATCCGGATTAATAGCATTAT+GGG - chr1_4:64739072-64739091 Msa0177640:CDS 30.0%
! TATCGTCCATAGTAACTTTT+GGG + chr1_4:64739110-64739129 None:intergenic 30.0%
! ATATCGTCCATAGTAACTTT+TGG + chr1_4:64739111-64739130 None:intergenic 30.0%
TATTAGCAATCAATTTGCCA+TGG - chr1_4:64739199-64739218 Msa0177640:CDS 30.0%
GATAAAAGCAAAACTAACCA+TGG + chr1_4:64739219-64739238 None:intergenic 30.0%
!!! GGTTAGTTTTGCTTTTATCA+TGG - chr1_4:64739220-64739239 Msa0177640:CDS 30.0%
!! AGTTTTGCTTTTATCATGGT+TGG - chr1_4:64739224-64739243 Msa0177640:CDS 30.0%
TTATCATGGTTGGAGTTATT+TGG - chr1_4:64739234-64739253 Msa0177640:CDS 30.0%
CTGGAAAATAGCAATGTATT+TGG + chr1_4:64739307-64739326 None:intergenic 30.0%
!! TTGAGGCTTTGTTGAACAAT+GGG + chr1_4:64737049-64737068 None:intergenic 35.0%
!! ATTGAGGCTTTGTTGAACAA+TGG + chr1_4:64737050-64737069 None:intergenic 35.0%
AAATTGTTCAGTCTCCTTCA+TGG - chr1_4:64737235-64737254 Msa0177640:CDS 35.0%
AATTGTTCAGTCTCCTTCAT+GGG - chr1_4:64737236-64737255 Msa0177640:CDS 35.0%
!!! AGGTCTTTTTGCTGTTGTAA+TGG - chr1_4:64737263-64737282 Msa0177640:CDS 35.0%
!!! TTGTAATGGTGAGTTTTGAG+AGG - chr1_4:64737277-64737296 Msa0177640:intron 35.0%
!!! TATTTTTGGCTCTATGACCA+TGG - chr1_4:64737425-64737444 Msa0177640:intron 35.0%
TGCACATTCAAGATTAGGAA+TGG - chr1_4:64737504-64737523 Msa0177640:intron 35.0%
CAATTATGGACGAATCATTC+GGG + chr1_4:64737655-64737674 None:intergenic 35.0%
!! AGTTTGTTGGGTTGGTAAAT+AGG - chr1_4:64737771-64737790 Msa0177640:CDS 35.0%
!!! TGTTGTTTTGTCTAGATTGG+TGG - chr1_4:64737866-64737885 Msa0177640:intron 35.0%
AGCAAATGGTTGTAATAGGT+TGG + chr1_4:64738090-64738109 None:intergenic 35.0%
GCAAAGCAAATGGTTGTAAT+AGG + chr1_4:64738094-64738113 None:intergenic 35.0%
!! CAATTTTAGAGGCAGTGTTT+AGG + chr1_4:64738119-64738138 None:intergenic 35.0%
!! TTTAAAACTATGGCTGGCTT+AGG - chr1_4:64738181-64738200 Msa0177640:intron 35.0%
CAATCTTACGAAACCAGAAA+GGG + chr1_4:64738229-64738248 None:intergenic 35.0%
TCAATCTTACGAAACCAGAA+AGG + chr1_4:64738230-64738249 None:intergenic 35.0%
CGTAAGATTGACTATCATGA+TGG - chr1_4:64738239-64738258 Msa0177640:intron 35.0%
ACCATTAATGACCTGAACTA+TGG - chr1_4:64738300-64738319 Msa0177640:intron 35.0%
CCATTAATGACCTGAACTAT+GGG - chr1_4:64738301-64738320 Msa0177640:intron 35.0%
ATAAGAAACTAGGCCTAAAG+AGG - chr1_4:64738373-64738392 Msa0177640:intron 35.0%
AACCAGTAAAACCTTATGCA+GGG + chr1_4:64738534-64738553 None:intergenic 35.0%
AAGCACTATCGTAGAACTAT+TGG - chr1_4:64738762-64738781 Msa0177640:intron 35.0%
GCGATTGAAATGTCTATATG+TGG - chr1_4:64738847-64738866 Msa0177640:intron 35.0%
TGAAATGTCTATATGTGGCT+TGG - chr1_4:64738852-64738871 Msa0177640:intron 35.0%
GAAATGTCTATATGTGGCTT+GGG - chr1_4:64738853-64738872 Msa0177640:intron 35.0%
! TGGCTTGGGAATTAATTCTT+AGG - chr1_4:64738867-64738886 Msa0177640:intron 35.0%
GGCTTGGGAATTAATTCTTA+GGG - chr1_4:64738868-64738887 Msa0177640:intron 35.0%
GCTTGGGAATTAATTCTTAG+GGG - chr1_4:64738869-64738888 Msa0177640:intron 35.0%
GCTCCTTTCAGAAAGTTTAA+GGG + chr1_4:64738907-64738926 None:intergenic 35.0%
AGCTCCTTTCAGAAAGTTTA+AGG + chr1_4:64738908-64738927 None:intergenic 35.0%
CTGAAAGGAGCTTAGAAATA+TGG - chr1_4:64738916-64738935 Msa0177640:intron 35.0%
CATTCATCATGCATACAACA+TGG + chr1_4:64738946-64738965 None:intergenic 35.0%
CATCCGGATTAATAGCATTA+TGG - chr1_4:64739071-64739090 Msa0177640:CDS 35.0%
AGCCCATAATGCTATTAATC+CGG + chr1_4:64739077-64739096 None:intergenic 35.0%
! TAATAGCATTATGGGCTATG+AGG - chr1_4:64739080-64739099 Msa0177640:CDS 35.0%
GTAGGAATTGGAGTGATAAT+TGG + chr1_4:64739333-64739352 None:intergenic 35.0%
CCAACAAATCTTTCAATGCA+AGG + chr1_4:64739404-64739423 None:intergenic 35.0%
CCTTGCATTGAAAGATTTGT+TGG - chr1_4:64739401-64739420 Msa0177640:five_prime_UTR 35.0%
GGAAGAGGAAGAACATAAAG+AGG - chr1_4:64736934-64736953 Msa0177640:three_prime_UTR 40.0%
TGTGAAAGAAGAACAGAGAG+TGG + chr1_4:64737025-64737044 None:intergenic 40.0%
!! AGAAAGTGGATTGGAAAGAG+AGG + chr1_4:64737119-64737138 None:intergenic 40.0%
! AGATTCAGTGGATTTGGGAA+CGG + chr1_4:64737163-64737182 None:intergenic 40.0%
! ACAGCAGATTCAGTGGATTT+GGG + chr1_4:64737168-64737187 None:intergenic 40.0%
! AACAGCAGATTCAGTGGATT+TGG + chr1_4:64737169-64737188 None:intergenic 40.0%
AGGAGACTGAACAATTTGAG+AGG + chr1_4:64737232-64737251 None:intergenic 40.0%
AAAAGACCTTTCTCCCATGA+AGG + chr1_4:64737252-64737271 None:intergenic 40.0%
!! TTGGGCTACTTCTAGTTTGT+TGG - chr1_4:64737758-64737777 Msa0177640:CDS 40.0%
!! TGGGCTACTTCTAGTTTGTT+GGG - chr1_4:64737759-64737778 Msa0177640:CDS 40.0%
!! CTACTTCTAGTTTGTTGGGT+TGG - chr1_4:64737763-64737782 Msa0177640:CDS 40.0%
CGTCAATATATTGTTCACCC+TGG - chr1_4:64737890-64737909 Msa0177640:intron 40.0%
GTATACCTTGTCGTTAACGT+TGG + chr1_4:64737948-64737967 None:intergenic 40.0%
TGTTTAGGGAGCAAAGCAAA+TGG + chr1_4:64738104-64738123 None:intergenic 40.0%
CCCATAGTTCAGGTCATTAA+TGG + chr1_4:64738304-64738323 None:intergenic 40.0%
AATGACCTGAACTATGGGTT+AGG - chr1_4:64738306-64738325 Msa0177640:intron 40.0%
CAACCAGTAAAACCTTATGC+AGG + chr1_4:64738535-64738554 None:intergenic 40.0%
! CTGCATAAGGTTTTACTGGT+TGG - chr1_4:64738533-64738552 Msa0177640:intron 40.0%
ACAGATACATCCTGCTACAT+TGG - chr1_4:64738557-64738576 Msa0177640:intron 40.0%
ACCAGTAGTAACAAATGCTG+TGG - chr1_4:64738583-64738602 Msa0177640:intron 40.0%
! ACCACAGCATTTGTTACTAC+TGG + chr1_4:64738587-64738606 None:intergenic 40.0%
!! TCTGCTTTTGTTCTCCTGTT+AGG - chr1_4:64738644-64738663 Msa0177640:intron 40.0%
TAGAACTATTGGACACAGAC+AGG - chr1_4:64738773-64738792 Msa0177640:intron 40.0%
CATGATGAATGTTTGCCTGT+AGG - chr1_4:64738955-64738974 Msa0177640:intron 40.0%
TTAATCCGGATGCGTGTATT+TGG + chr1_4:64739063-64739082 None:intergenic 40.0%
GGACTACCCAAAAGTTACTA+TGG - chr1_4:64739101-64739120 Msa0177640:CDS 40.0%
TTGGAGTGATAATTGGAGAC+TGG + chr1_4:64739326-64739345 None:intergenic 40.0%
TGGCTCTTCATAGTAGGAAT+TGG + chr1_4:64739345-64739364 None:intergenic 40.0%
! GTAAACTGGCTCTTCATAGT+AGG + chr1_4:64739351-64739370 None:intergenic 40.0%
AGAGGATAGAGTTGAGAGAG+AGG - chr1_4:64736952-64736971 Msa0177640:three_prime_UTR 45.0%
TGTGAGAAGGAACACGAGAA+GGG + chr1_4:64737095-64737114 None:intergenic 45.0%
TTGTGAGAAGGAACACGAGA+AGG + chr1_4:64737096-64737115 None:intergenic 45.0%
TGGAAAGAGAGGTTGTGAGA+AGG + chr1_4:64737108-64737127 None:intergenic 45.0%
AGCGTTGTGAGAAAGTGGAT+TGG + chr1_4:64737128-64737147 None:intergenic 45.0%
! GATTCAGTGGATTTGGGAAC+GGG + chr1_4:64737162-64737181 None:intergenic 45.0%
TATGTTTCGGCCAAACTCCA+GGG + chr1_4:64737573-64737592 None:intergenic 45.0%
TTATGTTTCGGCCAAACTCC+AGG + chr1_4:64737574-64737593 None:intergenic 45.0%
!! CTTGTTGTTCAGAGGCTCAA+AGG - chr1_4:64737920-64737939 Msa0177640:intron 45.0%
TAGGTCCTAACCCATAGTTC+AGG + chr1_4:64738314-64738333 None:intergenic 45.0%
ATTGTAGATCGCCCTGCATA+AGG - chr1_4:64738520-64738539 Msa0177640:intron 45.0%
!! TACTGGTTTGCCAATGTAGC+AGG + chr1_4:64738570-64738589 None:intergenic 45.0%
GTATGCGACAGTTGAAGATC+AGG - chr1_4:64738607-64738626 Msa0177640:intron 45.0%
TGTTTGCCTGTAGGCATATG+AGG - chr1_4:64738964-64738983 Msa0177640:intron 45.0%
GAAGGAACACGAGAAGGGAA+AGG + chr1_4:64737090-64737109 None:intergenic 50.0%
! AGGCAAGCGTTGTGAGAAAG+TGG + chr1_4:64737133-64737152 None:intergenic 50.0%
GATTTGGGAACGGGTAACAG+AGG + chr1_4:64737153-64737172 None:intergenic 50.0%
AGGTGCAACAGCAGATTCAG+TGG + chr1_4:64737175-64737194 None:intergenic 50.0%
ACTTGAGAGTCAGGCTCAAC+AGG + chr1_4:64737195-64737214 None:intergenic 50.0%
TGAGCCTGACTCTCAAGTGT+CGG - chr1_4:64737197-64737216 Msa0177640:CDS 50.0%
CAGTCTCCTTCATGGGAGAA+AGG - chr1_4:64737243-64737262 Msa0177640:CDS 50.0%
TTGTCTTATCCCTCTGACCC+TGG - chr1_4:64737553-64737572 Msa0177640:CDS 50.0%
AGGTGCCAACGTTAACGACA+AGG - chr1_4:64737940-64737959 Msa0177640:intron 50.0%
TACGAAACCAGAAAGGGAGC+AGG + chr1_4:64738223-64738242 None:intergenic 50.0%
! CGCCCTGCATAAGGTTTTAC+TGG - chr1_4:64738529-64738548 Msa0177640:intron 50.0%
TGGAAGCCTCATATGCCTAC+AGG + chr1_4:64738973-64738992 None:intergenic 50.0%
GACAGCCAAATACACGCATC+CGG - chr1_4:64739055-64739074 Msa0177640:intron 50.0%
GACTCCGACACTTGAGAGTC+AGG + chr1_4:64737204-64737223 None:intergenic 55.0%
ATCCCTCTGACCCTGGAGTT+TGG - chr1_4:64737560-64737579 Msa0177640:CDS 55.0%
ATATTGTTCACCCTGGCCGC+TGG - chr1_4:64737897-64737916 Msa0177640:intron 55.0%
GCCTCTGAACAACAAGCCAG+CGG + chr1_4:64737916-64737935 None:intergenic 55.0%
AGTGCTTCCTGCTCCCTTTC+TGG - chr1_4:64738213-64738232 Msa0177640:intron 55.0%
GGCCAAACTCCAGGGTCAGA+GGG + chr1_4:64737565-64737584 None:intergenic 60.0%
GAACAACAAGCCAGCGGCCA+GGG + chr1_4:64737910-64737929 None:intergenic 60.0%
TGAACAACAAGCCAGCGGCC+AGG + chr1_4:64737911-64737930 None:intergenic 60.0%
!! GCCGCTGGCTTGTTGTTCAG+AGG - chr1_4:64737912-64737931 Msa0177640:intron 60.0%
CGGCCAAACTCCAGGGTCAG+AGG + chr1_4:64737566-64737585 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 64736905 64739439 64736905 ID=Msa0177640;Name=Msa0177640
chr1_4 mRNA 64736905 64739439 64736905 ID=Msa0177640-mRNA-1;Parent=Msa0177640;Name=Msa0177640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|290|212
chr1_4 exon 64736905 64737284 64736905 ID=Msa0177640-mRNA-1:exon:21045;Parent=Msa0177640-mRNA-1
chr1_4 exon 64737550 64737624 64737550 ID=Msa0177640-mRNA-1:exon:21044;Parent=Msa0177640-mRNA-1
chr1_4 exon 64737716 64737817 64737716 ID=Msa0177640-mRNA-1:exon:21043;Parent=Msa0177640-mRNA-1
chr1_4 exon 64738383 64738463 64738383 ID=Msa0177640-mRNA-1:exon:21042;Parent=Msa0177640-mRNA-1
chr1_4 exon 64739060 64739439 64739060 ID=Msa0177640-mRNA-1:exon:21041;Parent=Msa0177640-mRNA-1
chr1_4 five_prime_UTR 64739351 64739439 64739351 ID=Msa0177640-mRNA-1:five_prime_utr;Parent=Msa0177640-mRNA-1
chr1_4 CDS 64739060 64739350 64739060 ID=Msa0177640-mRNA-1:cds;Parent=Msa0177640-mRNA-1
chr1_4 CDS 64738383 64738463 64738383 ID=Msa0177640-mRNA-1:cds;Parent=Msa0177640-mRNA-1
chr1_4 CDS 64737716 64737817 64737716 ID=Msa0177640-mRNA-1:cds;Parent=Msa0177640-mRNA-1
chr1_4 CDS 64737550 64737624 64737550 ID=Msa0177640-mRNA-1:cds;Parent=Msa0177640-mRNA-1
chr1_4 CDS 64737195 64737284 64737195 ID=Msa0177640-mRNA-1:cds;Parent=Msa0177640-mRNA-1
chr1_4 three_prime_UTR 64736905 64737194 64736905 ID=Msa0177640-mRNA-1:three_prime_utr;Parent=Msa0177640-mRNA-1
Gene Sequence

>Msa0177640

ATGGCTTCTGCAACTGCTTCTACTCTTTCCACTCTCTGTTCTTCTTTCACAACCCATTGTTCAACAAAGCCTCAATTCTCTATTTCTCATCAACCTTTCCCTTCTCGTGTTCCTTCTCACAACCTCTCTTTCCAATCCACTTTCTCACAACGCTTGCCTCTGTTACCCGTTCCCAAATCCACTGAATCTGCTGTTGCACCTGTTGAGCCTGACTCTCAAGTGTCGGAGTCTGAATCCTCTCAAATTGTTCAGTCTCCTTCATGGGAGAAAGGTCTTTTTGCTGTTGTAATGATTGGTGGACGTCAATATATTGTTCACCCTGGCCGCTGGCTTGTTGTTCAGAGGCTCAAAGGTGCCAACGTTAACGACAAGATCGCCCTGCATAAGGTTTTACTGGTTGGAACAGATACATCCTGCTACATTGGCAAACCAGTAGTAACAAATGCTGTGGTGTATGCGACAGTTGAAGATCAGGGTTTAGACAACAAAGTAATTGTATTCAAATACAAAAGAAAGAAGCACTATCGTAGAACTATTGGACACAGACAGCCAAATACACGCATCCGGATTAATAGCATTATGGGCTATGAGGACTACCCAAAAGTTACTATGGACGATATAAATTTGGAATCATCATGA

Protein sequence

>Msa0177640

MASATASTLSTLCSSFTTHCSTKPQFSISHQPFPSRVPSHNLSFQSTFSQRLPLLPVPKSTESAVAPVEPDSQVSESESSQIVQSPSWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEDQGLDNKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLESS*