AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047660 MtrunA17_Chr4g0040451 90.909 220 13 1 17 236 7 219 3.69e-145 404
Msa0047660 MtrunA17_Chr6g0465041 29.932 147 97 2 96 236 77 223 2.74e-16 75.1
Msa0047660 MtrunA17_Chr1g0207521 24.823 141 105 1 92 231 107 247 5.34e-13 66.6
Msa0047660 MtrunA17_Chr7g0255351 28.415 183 112 3 54 236 92 255 9.64e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047660 AT2G42770.1 72.283 184 48 1 56 236 49 232 1.62e-95 279
Msa0047660 AT5G43140.1 30.137 146 101 1 92 236 104 249 7.93e-18 80.1
Msa0047660 AT4G33905.1 29.078 141 99 1 92 231 108 248 4.90e-15 72.8
Msa0047660 AT2G14860.1 26.027 146 106 2 93 236 99 244 7.18e-13 66.6

Find 91 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCCCACTTTACTTTA+TGG 0.111803 1_1:-80731619 Msa0047660:intron
TCTTTGCATGGAACAATTTA+TGG 0.112525 1_1:-80731684 Msa0047660:CDS
TGTCAATGGGCTCAATATTT+TGG 0.126119 1_1:-80730468 Msa0047660:CDS
CTGTCAGTGTATTAAATTTC+TGG 0.134675 1_1:-80731493 Msa0047660:intron
TTCCAATTAAGACTTATATT+TGG 0.167204 1_1:-80730142 Msa0047660:three_prime_UTR
CACATGGACCCAACACAATT+TGG 0.192502 1_1:+80731719 None:intergenic
TCCCAAATATAAGTCTTAAT+TGG 0.200883 1_1:+80730140 None:intergenic
AACATTGCATGTGCTTAAAA+AGG 0.248373 1_1:-80729977 Msa0047660:three_prime_UTR
ATAATTTGAGTACATTATTA+TGG 0.248665 1_1:-80730118 Msa0047660:three_prime_UTR
TTGATGGAAATTCTTACTTT+TGG 0.263005 1_1:+80729896 None:intergenic
ACTGCCTCCCAGCATGTTTC+CGG 0.270902 1_1:+80730068 None:intergenic
CGCCGTCGAGAATCCGTTTC+GGG 0.273555 1_1:+80732445 None:intergenic
TGTCCAGAACCTAATGTTAA+AGG 0.277336 1_1:-80731856 Msa0047660:intron
CGGAGGTGGTTATCAGTTTC+CGG 0.280297 1_1:-80732383 Msa0047660:CDS
CGTCGGATTCGTTCGAATTC+GGG 0.285221 1_1:-80732424 Msa0047660:CDS
GGAATGGACGCGATTGGATT+TGG 0.285779 1_1:-80732498 Msa0047660:CDS
TCCAATTAAGACTTATATTT+GGG 0.294414 1_1:-80730141 Msa0047660:three_prime_UTR
GCGTCGGATTCGTTCGAATT+CGG 0.299605 1_1:-80732425 Msa0047660:CDS
GTTAATTGTTGATCTGATTT+CGG 0.300060 1_1:-80730096 Msa0047660:three_prime_UTR
AACATTAGGTTCTGGACATT+TGG 0.316911 1_1:+80731861 None:intergenic
ATAATAATACCTTTAACATT+AGG 0.332092 1_1:+80731847 None:intergenic
GCCGCGTCGCTTACTCTTAC+TGG 0.342995 1_1:-80732343 Msa0047660:CDS
GGTTCTGGACATTTGGCTTT+GGG 0.347006 1_1:+80731868 None:intergenic
GTCACCCTTGGAATGATCTT+TGG 0.351053 1_1:-80730037 Msa0047660:three_prime_UTR
CTGATTCTGATGACCCAATT+GGG 0.351503 1_1:-80732723 Msa0047660:five_prime_UTR
ACAAAAGCTTTCAGAGCTTC+CGG 0.364498 1_1:-80731659 Msa0047660:CDS
ACTTGTTCATAGTTGATGAT+AGG 0.367450 1_1:+80730437 None:intergenic
GAATGGACGCGATTGGATTT+GGG 0.369109 1_1:-80732497 Msa0047660:CDS
AGGTTCTGGACATTTGGCTT+TGG 0.375932 1_1:+80731867 None:intergenic
GGACCAGATGAACTATTGTT+TGG 0.386868 1_1:-80729956 Msa0047660:three_prime_UTR
CGTTCGAATTCGGGTTCACC+TGG 0.399031 1_1:-80732415 Msa0047660:CDS
CAGAGTGGCTTTCATGTCAA+TGG 0.403097 1_1:-80730482 Msa0047660:CDS
TAATAGAGAGATTATTATAT+AGG 0.404073 1_1:-80730173 Msa0047660:three_prime_UTR
ATACCTTTAACATTAGGTTC+TGG 0.414480 1_1:+80731853 None:intergenic
TGGTATGTTACAATACTTGT+TGG 0.424655 1_1:-80730017 Msa0047660:three_prime_UTR
TAACCAAACAATAGTTCATC+TGG 0.426023 1_1:+80729953 None:intergenic
ACGCCGTCGAGAATCCGTTT+CGG 0.430775 1_1:+80732444 None:intergenic
CCTGGTTCCGCCGTCGGAGG+TGG 0.446747 1_1:-80732397 Msa0047660:CDS
TTACTAAACCAAATTGTGTT+GGG 0.447561 1_1:-80731727 Msa0047660:CDS
CAGAAATTTAATACACTGAC+AGG 0.448515 1_1:+80731494 None:intergenic
GGAGACAATGGTCAAGCAAC+TGG 0.451380 1_1:+80731889 None:intergenic
ACTGATTCTGATGACCCAAT+TGG 0.452279 1_1:-80732724 Msa0047660:five_prime_UTR
TTGTGGTTTAGAATTGTTAA+CGG 0.452285 1_1:-80732679 Msa0047660:five_prime_UTR
CGGAAAGACCGGAAACATGC+TGG 0.458895 1_1:-80730076 Msa0047660:three_prime_UTR
TCTCTTTAGCTTTGTTCCAC+CGG 0.468029 1_1:+80732296 None:intergenic
GACATGAAAGCCACTCTGGC+TGG 0.468430 1_1:+80730487 None:intergenic
CATTGACATGAAAGCCACTC+TGG 0.472403 1_1:+80730483 None:intergenic
GCAGTTAACGCCTGCTTCAC+CGG 0.477885 1_1:+80732364 None:intergenic
GAGTGGTGAAAATGCCTCTC+AGG 0.482368 1_1:-80732275 Msa0047660:intron
TTTGGAAGTGGGACCCGAAA+CGG 0.490068 1_1:-80732458 Msa0047660:CDS
GGTTCACCTGGTTCCGCCGT+CGG 0.491942 1_1:-80732403 Msa0047660:CDS
TTTACTAAACCAAATTGTGT+TGG 0.492300 1_1:-80731728 Msa0047660:CDS
GACGCGATTGGATTTGGGAG+TGG 0.493904 1_1:-80732492 Msa0047660:CDS
GCTCTGCGAATGACTTCCTA+TGG 0.499911 1_1:-80731948 Msa0047660:CDS
TGATCTGATTTCGGAAAGAC+CGG 0.506115 1_1:-80730087 Msa0047660:three_prime_UTR
AAGAACCAGGGCCATAGAAA+AGG 0.506838 1_1:+80731922 None:intergenic
TTATCAGTTTCCGGTGAAGC+AGG 0.513247 1_1:-80732374 Msa0047660:CDS
TGAAGAAAATTTGTTGCTTG+TGG 0.514759 1_1:-80732696 Msa0047660:five_prime_UTR
TGGTACCAGGCAAAAGAACC+AGG 0.517678 1_1:+80731909 None:intergenic
AGAGTGGCTTTCATGTCAAT+GGG 0.522920 1_1:-80730481 Msa0047660:CDS
CCACCTCCGACGGCGGAACC+AGG 0.528246 1_1:+80732397 None:intergenic
TTTGTACCATAAAGTAAAGT+GGG 0.532650 1_1:+80731613 None:intergenic
AAAGCCACTCTGGCTGGAAG+AGG 0.533546 1_1:+80730493 None:intergenic
GTTTGTACCATAAAGTAAAG+TGG 0.534203 1_1:+80731612 None:intergenic
CATTTGGCTTTGGGAGACAA+TGG 0.544393 1_1:+80731877 None:intergenic
GGTGCCTCTTCCAGCCAGAG+TGG 0.561435 1_1:-80730497 Msa0047660:CDS
CTGATAACCACCTCCGACGG+CGG 0.561979 1_1:+80732390 None:intergenic
TCATTGCGGTTATCTTTGCA+TGG 0.564794 1_1:-80731696 Msa0047660:CDS
TGTTTGAAATTCTTACAATG+AGG 0.567069 1_1:-80730381 Msa0047660:intron
ATGGTCAAGCAACTGGTACC+AGG 0.567339 1_1:+80731896 None:intergenic
TCACCTGGTTCCGCCGTCGG+AGG 0.567431 1_1:-80732400 Msa0047660:CDS
AAACGGATTCTCGACGGCGT+CGG 0.571014 1_1:-80732441 Msa0047660:CDS
TGCGAGGGAATGGACGCGAT+TGG 0.572598 1_1:-80732504 Msa0047660:CDS
CGATTGCTCAGCTCAGTAGC+CGG 0.582836 1_1:-80732315 Msa0047660:CDS
GGAAAGACCGGAAACATGCT+GGG 0.587992 1_1:-80730075 Msa0047660:three_prime_UTR
ACATACCAAAGATCATTCCA+AGG 0.607226 1_1:+80730032 None:intergenic
AAGATAACCGCAATGACACA+TGG 0.607959 1_1:+80731703 None:intergenic
TGATTCTGATGACCCAATTG+GGG 0.625195 1_1:-80732722 Msa0047660:five_prime_UTR
AAACTGATAACCACCTCCGA+CGG 0.632014 1_1:+80732387 None:intergenic
GCCATAGAAAAGGAATCCAT+AGG 0.637264 1_1:+80731932 None:intergenic
GACCCGAAACGGATTCTCGA+CGG 0.639306 1_1:-80732447 Msa0047660:CDS
ATTTGACACTCTGAAAGCTG+TGG 0.644992 1_1:-80730249 Msa0047660:three_prime_UTR
TTGCTCAGCTCAGTAGCCGG+TGG 0.657176 1_1:-80732312 Msa0047660:CDS
TGGAACAAAGCTAAAGAGAG+TGG 0.660771 1_1:-80732292 Msa0047660:CDS
GTTGGGTCCATGTGTCATTG+CGG 0.690123 1_1:-80731710 Msa0047660:CDS
CATACCAAAGATCATTCCAA+GGG 0.694101 1_1:+80730033 None:intergenic
CAATATTTCACTAACCTGAG+AGG 0.702533 1_1:+80732261 None:intergenic
AGAAATTTAATACACTGACA+GGG 0.717165 1_1:+80731495 None:intergenic
GGTACCAGGCAAAAGAACCA+GGG 0.724550 1_1:+80731910 None:intergenic
AAGACCGGAAACATGCTGGG+AGG 0.755788 1_1:-80730072 Msa0047660:three_prime_UTR
ACCAGTAAGAGTAAGCGACG+CGG 0.763238 1_1:+80732342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAAAATCGAATTTTTA+TGG + chr1_1:80729932-80729951 None:intergenic 10.0%
!!! TCGATTTTTTTTTTTTAAAT+TGG - chr1_1:80729969-80729988 Msa0047660:three_prime_UTR 10.0%
!!! TTTTTTTTTTAAATTGGAAA+AGG - chr1_1:80729975-80729994 Msa0047660:three_prime_UTR 10.0%
!!! TAAAATATAGTATATTGATT+AGG + chr1_1:80731596-80731615 None:intergenic 10.0%
!!! ACAAAATAAGCTTATTTTTT+AGG - chr1_1:80730459-80730478 Msa0047660:CDS 15.0%
!! ATAATAATACCTTTAACATT+AGG + chr1_1:80730738-80730757 None:intergenic 15.0%
!! ATATGTGTGTTTATATAAAA+CGG + chr1_1:80731214-80731233 None:intergenic 15.0%
!! TTTAAGAAAATAGAAGTAAT+TGG - chr1_1:80731817-80731836 Msa0047660:intron 15.0%
!! TAATAGAGAGATTATTATAT+AGG - chr1_1:80732409-80732428 Msa0047660:CDS 15.0%
!! ATAATTTGAGTACATTATTA+TGG - chr1_1:80732464-80732483 Msa0047660:CDS 15.0%
!!! TTTTAGTTAATTACATTTGA+TGG + chr1_1:80732705-80732724 None:intergenic 15.0%
!! ATAGTTTAAGTATCTCTATT+AGG - chr1_1:80730377-80730396 Msa0047660:intron 20.0%
!! TAGTTTAAGTATCTCTATTA+GGG - chr1_1:80730378-80730397 Msa0047660:intron 20.0%
!! TAAGAAAAAGTTGCATATAT+AGG + chr1_1:80731287-80731306 None:intergenic 20.0%
!!! TAAGTAATATAAGTGTCATT+TGG - chr1_1:80731540-80731559 Msa0047660:intron 20.0%
!!! TTCCACTTTTATAATTTGTT+TGG - chr1_1:80732248-80732267 Msa0047660:intron 20.0%
!! GTTAATTAATCTACAAATAC+AGG + chr1_1:80732293-80732312 None:intergenic 20.0%
!! TTCCAATTAAGACTTATATT+TGG - chr1_1:80732440-80732459 Msa0047660:CDS 20.0%
!! TCCAATTAAGACTTATATTT+GGG - chr1_1:80732441-80732460 Msa0047660:CDS 20.0%
!! TTGTGGTTTAGAATTGTTAA+CGG - chr1_1:80729903-80729922 Msa0047660:three_prime_UTR 25.0%
! ACATTATCACTGAAAATTGA+AGG + chr1_1:80730349-80730368 None:intergenic 25.0%
! AGTTTGGTATTAACCAAAAA+AGG - chr1_1:80730561-80730580 Msa0047660:intron 25.0%
! TTAACCAAAAAAGGTTCTTT+AGG - chr1_1:80730570-80730589 Msa0047660:intron 25.0%
! TTTACTAAACCAAATTGTGT+TGG - chr1_1:80730854-80730873 Msa0047660:intron 25.0%
! TTACTAAACCAAATTGTGTT+GGG - chr1_1:80730855-80730874 Msa0047660:intron 25.0%
! TTTGTACCATAAAGTAAAGT+GGG + chr1_1:80730972-80730991 None:intergenic 25.0%
! AGAAATTTAATACACTGACA+GGG + chr1_1:80731090-80731109 None:intergenic 25.0%
!! TAGATTATACCTTTTCACTA+GGG + chr1_1:80731263-80731282 None:intergenic 25.0%
! AACTGCAACTATAAGATAAA+GGG + chr1_1:80731442-80731461 None:intergenic 25.0%
! AAACTGCAACTATAAGATAA+AGG + chr1_1:80731443-80731462 None:intergenic 25.0%
! AAATCTTGAAGTTAAGCAAT+TGG + chr1_1:80731507-80731526 None:intergenic 25.0%
! TCCATATTAAGAAAATTAGG+CGG + chr1_1:80731693-80731712 None:intergenic 25.0%
! TCGTCCATATTAAGAAAATT+AGG + chr1_1:80731696-80731715 None:intergenic 25.0%
! TGTAGGTATAAATAGCTATT+AGG - chr1_1:80731922-80731941 Msa0047660:CDS 25.0%
! GTAGGTATAAATAGCTATTA+GGG - chr1_1:80731923-80731942 Msa0047660:CDS 25.0%
! CATACTTACTCTACTAATTA+AGG - chr1_1:80731964-80731983 Msa0047660:CDS 25.0%
! TGATCATTCTACTAATTATC+TGG - chr1_1:80731990-80732009 Msa0047660:CDS 25.0%
! ACTAATTATCTGGTTATTTG+TGG - chr1_1:80732000-80732019 Msa0047660:intron 25.0%
!!! TATTTTTATGGCTCTGTATA+GGG - chr1_1:80732061-80732080 Msa0047660:intron 25.0%
!! TGTTTGAAATTCTTACAATG+AGG - chr1_1:80732201-80732220 Msa0047660:intron 25.0%
! AGCCAAACAAATTATAAAAG+TGG + chr1_1:80732253-80732272 None:intergenic 25.0%
! AATCTACAAATACAGGATAA+TGG + chr1_1:80732286-80732305 None:intergenic 25.0%
! TCCCAAATATAAGTCTTAAT+TGG + chr1_1:80732445-80732464 None:intergenic 25.0%
! GTTAATTGTTGATCTGATTT+CGG - chr1_1:80732486-80732505 Msa0047660:CDS 25.0%
!!! TACTTTTGGAATTAACCAAT+TGG + chr1_1:80732675-80732694 None:intergenic 25.0%
!! TTGATGGAAATTCTTACTTT+TGG + chr1_1:80732689-80732708 None:intergenic 25.0%
! TTTTCTTCAATTCCCCAATT+GGG + chr1_1:80729875-80729894 None:intergenic 30.0%
! ATTTTCTTCAATTCCCCAAT+TGG + chr1_1:80729876-80729895 None:intergenic 30.0%
!! TGAAGAAAATTTGTTGCTTG+TGG - chr1_1:80729886-80729905 Msa0047660:three_prime_UTR 30.0%
TTGTTGTGTTATCTATCTAG+TGG - chr1_1:80730526-80730545 Msa0047660:intron 30.0%
!!! ACATCCTAAAGAACCTTTTT+TGG + chr1_1:80730577-80730596 None:intergenic 30.0%
ATACCTTTAACATTAGGTTC+TGG + chr1_1:80730732-80730751 None:intergenic 30.0%
GTTCATCTATAAATGATGTC+TGG - chr1_1:80730758-80730777 Msa0047660:intron 30.0%
! GTTTAATTAACAGAAGCATG+AGG - chr1_1:80730780-80730799 Msa0047660:intron 30.0%
!!! TTTTTTATCGTTTCGTTGAC+AGG - chr1_1:80730830-80730849 Msa0047660:intron 30.0%
TCTTTGCATGGAACAATTTA+TGG - chr1_1:80730898-80730917 Msa0047660:intron 30.0%
! GCATCTCTTTTGTATTTTTC+CGG + chr1_1:80730945-80730964 None:intergenic 30.0%
GTTTGTACCATAAAGTAAAG+TGG + chr1_1:80730973-80730992 None:intergenic 30.0%
AGTAAGTCACAATAACACTT+AGG + chr1_1:80731003-80731022 None:intergenic 30.0%
AACAGACAAATTACACAGAA+AGG + chr1_1:80731048-80731067 None:intergenic 30.0%
CAGAAATTTAATACACTGAC+AGG + chr1_1:80731091-80731110 None:intergenic 30.0%
CTGTCAGTGTATTAAATTTC+TGG - chr1_1:80731089-80731108 Msa0047660:intron 30.0%
CAAGCAGAATATCAGATTTA+AGG + chr1_1:80731130-80731149 None:intergenic 30.0%
! CTAGATTATACCTTTTCACT+AGG + chr1_1:80731264-80731283 None:intergenic 30.0%
AAAAATGAACTAGCATGTCA+TGG + chr1_1:80731349-80731368 None:intergenic 30.0%
!!! GACATGCTAGTTCATTTTTT+AGG - chr1_1:80731350-80731369 Msa0047660:intron 30.0%
ACTGCAACTATAAGATAAAG+GGG + chr1_1:80731441-80731460 None:intergenic 30.0%
TTATAGTTGCAGTTTGCAAA+TGG - chr1_1:80731448-80731467 Msa0047660:intron 30.0%
! ACCGCCTAATTTTCTTAATA+TGG - chr1_1:80731689-80731708 Msa0047660:CDS 30.0%
GTCTATAAGTATGGTTGTTA+GGG - chr1_1:80731732-80731751 Msa0047660:CDS 30.0%
!!! TTGTTAGGGATTTTGTTGTT+TGG - chr1_1:80731746-80731765 Msa0047660:intron 30.0%
!!! TGTTAGGGATTTTGTTGTTT+GGG - chr1_1:80731747-80731766 Msa0047660:intron 30.0%
CTATACAGAGCCATAAAAAT+AGG + chr1_1:80732062-80732081 None:intergenic 30.0%
!!! CTATTTTTATGGCTCTGTAT+AGG - chr1_1:80732060-80732079 Msa0047660:intron 30.0%
!! ACTTGTTCATAGTTGATGAT+AGG + chr1_1:80732148-80732167 None:intergenic 30.0%
TGGTATGTTACAATACTTGT+TGG - chr1_1:80732565-80732584 Msa0047660:exon 30.0%
AACATTGCATGTGCTTAAAA+AGG - chr1_1:80732605-80732624 Msa0047660:five_prime_UTR 30.0%
TAACCAAACAATAGTTCATC+TGG + chr1_1:80732632-80732651 None:intergenic 30.0%
!!! ATTTTTCGGGTTTTGGAAGT+GGG - chr1_1:80730113-80730132 Msa0047660:three_prime_UTR 35.0%
CAATATTTCACTAACCTGAG+AGG + chr1_1:80730324-80730343 None:intergenic 35.0%
CTATCTAGTGGTGAATACTT+TGG - chr1_1:80730538-80730557 Msa0047660:intron 35.0%
! TCCTATGGATTCCTTTTCTA+TGG - chr1_1:80730649-80730668 Msa0047660:intron 35.0%
!! AACATTAGGTTCTGGACATT+TGG + chr1_1:80730724-80730743 None:intergenic 35.0%
TGTCCAGAACCTAATGTTAA+AGG - chr1_1:80730726-80730745 Msa0047660:intron 35.0%
ACAATAACACTTAGGCAATG+AGG + chr1_1:80730995-80731014 None:intergenic 35.0%
! TCTGTGTAATTTGTCTGTTC+AGG - chr1_1:80731049-80731068 Msa0047660:intron 35.0%
!!! TCTGTTCAGGTTTTAGATTC+TGG - chr1_1:80731062-80731081 Msa0047660:intron 35.0%
AATTCACTTCCCTAGTGAAA+AGG - chr1_1:80731251-80731270 Msa0047660:intron 35.0%
!!! TGTCTTGCATTTTAGAGTGA+GGG - chr1_1:80731471-80731490 Msa0047660:intron 35.0%
ACAGCAAAGGTCTATAAGTA+TGG - chr1_1:80731723-80731742 Msa0047660:CDS 35.0%
GGTCTATAAGTATGGTTGTT+AGG - chr1_1:80731731-80731750 Msa0047660:CDS 35.0%
!!! ACCTTCCTTGCCTATTTTTA+TGG - chr1_1:80732049-80732068 Msa0047660:intron 35.0%
!! TGTCAATGGGCTCAATATTT+TGG - chr1_1:80732114-80732133 Msa0047660:intron 35.0%
!! AGAGTGTCAAATCTTTTGCA+GGG + chr1_1:80732325-80732344 None:intergenic 35.0%
CATACCAAAGATCATTCCAA+GGG + chr1_1:80732552-80732571 None:intergenic 35.0%
ACATACCAAAGATCATTCCA+AGG + chr1_1:80732553-80732572 None:intergenic 35.0%
! TTCAGCTTTTTGCAACCAAT+TGG - chr1_1:80732657-80732676 Msa0047660:five_prime_UTR 35.0%
! ACTGATTCTGATGACCCAAT+TGG - chr1_1:80729858-80729877 Msa0047660:three_prime_UTR 40.0%
CTGATTCTGATGACCCAATT+GGG - chr1_1:80729859-80729878 Msa0047660:three_prime_UTR 40.0%
TGATTCTGATGACCCAATTG+GGG - chr1_1:80729860-80729879 Msa0047660:three_prime_UTR 40.0%
! AGCATAAAACGCTGCGTTTT+TGG - chr1_1:80730005-80730024 Msa0047660:three_prime_UTR 40.0%
!!! TGCGTATTTTTTTGTGTGCG+AGG - chr1_1:80730062-80730081 Msa0047660:three_prime_UTR 40.0%
!!! GCGTATTTTTTTGTGTGCGA+GGG - chr1_1:80730063-80730082 Msa0047660:three_prime_UTR 40.0%
!!! TTTTTTTGTGTGCGAGGGAA+TGG - chr1_1:80730068-80730087 Msa0047660:three_prime_UTR 40.0%
!! GGATTTGGGAGTGGATTTTT+CGG - chr1_1:80730099-80730118 Msa0047660:three_prime_UTR 40.0%
!! GATTTGGGAGTGGATTTTTC+GGG - chr1_1:80730100-80730119 Msa0047660:three_prime_UTR 40.0%
!!! GATTTTTCGGGTTTTGGAAG+TGG - chr1_1:80730112-80730131 Msa0047660:three_prime_UTR 40.0%
!! TCTCTTTAGCTTTGTTCCAC+CGG + chr1_1:80730289-80730308 None:intergenic 40.0%
TGGAACAAAGCTAAAGAGAG+TGG - chr1_1:80730290-80730309 Msa0047660:intron 40.0%
!! GTGGTGAATACTTTGGAGTT+TGG - chr1_1:80730545-80730564 Msa0047660:intron 40.0%
GCCATAGAAAAGGAATCCAT+AGG + chr1_1:80730653-80730672 None:intergenic 40.0%
AAGATAACCGCAATGACACA+TGG + chr1_1:80730882-80730901 None:intergenic 40.0%
TCATTGCGGTTATCTTTGCA+TGG - chr1_1:80730886-80730905 Msa0047660:intron 40.0%
ACAAAAGCTTTCAGAGCTTC+CGG - chr1_1:80730923-80730942 Msa0047660:intron 40.0%
GCTCTTCCCACTTTACTTTA+TGG - chr1_1:80730963-80730982 Msa0047660:intron 40.0%
GTGAGTATCTTGTATCGAGT+TGG - chr1_1:80731399-80731418 Msa0047660:intron 40.0%
!!! GTGTCTTGCATTTTAGAGTG+AGG - chr1_1:80731470-80731489 Msa0047660:intron 40.0%
!!! GTCTTGCATTTTAGAGTGAG+GGG - chr1_1:80731472-80731491 Msa0047660:intron 40.0%
!!! TCTTGCATTTTAGAGTGAGG+GGG - chr1_1:80731473-80731492 Msa0047660:intron 40.0%
GTGCCTTCAATAAGAAGTCT+CGG - chr1_1:80731879-80731898 Msa0047660:CDS 40.0%
TACATCGCTTGTGATCATGT+AGG - chr1_1:80731905-80731924 Msa0047660:CDS 40.0%
GCCATAAAAATAGGCAAGGA+AGG + chr1_1:80732053-80732072 None:intergenic 40.0%
CAGAGCCATAAAAATAGGCA+AGG + chr1_1:80732057-80732076 None:intergenic 40.0%
!! TTTTATGGCTCTGTATAGGG+TGG - chr1_1:80732064-80732083 Msa0047660:intron 40.0%
AGAGTGGCTTTCATGTCAAT+GGG - chr1_1:80732101-80732120 Msa0047660:intron 40.0%
!! CAGAGTGTCAAATCTTTTGC+AGG + chr1_1:80732326-80732345 None:intergenic 40.0%
! ATTTGACACTCTGAAAGCTG+TGG - chr1_1:80732333-80732352 Msa0047660:CDS 40.0%
TGATCTGATTTCGGAAAGAC+CGG - chr1_1:80732495-80732514 Msa0047660:CDS 40.0%
GGACCAGATGAACTATTGTT+TGG - chr1_1:80732626-80732645 Msa0047660:five_prime_UTR 40.0%
GAATGGACGCGATTGGATTT+GGG - chr1_1:80730085-80730104 Msa0047660:three_prime_UTR 45.0%
!!! GGAGTGGATTTTTCGGGTTT+TGG - chr1_1:80730106-80730125 Msa0047660:three_prime_UTR 45.0%
AAACTGATAACCACCTCCGA+CGG + chr1_1:80730198-80730217 None:intergenic 45.0%
TTATCAGTTTCCGGTGAAGC+AGG - chr1_1:80730208-80730227 Msa0047660:three_prime_UTR 45.0%
TTAGGGCTCTGTGAATCTTG+AGG - chr1_1:80730395-80730414 Msa0047660:three_prime_UTR 45.0%
AAGAACCAGGGCCATAGAAA+AGG + chr1_1:80730663-80730682 None:intergenic 45.0%
!! CATTTGGCTTTGGGAGACAA+TGG + chr1_1:80730708-80730727 None:intergenic 45.0%
!! GGTTCTGGACATTTGGCTTT+GGG + chr1_1:80730717-80730736 None:intergenic 45.0%
!! AGGTTCTGGACATTTGGCTT+TGG + chr1_1:80730718-80730737 None:intergenic 45.0%
CACATGGACCCAACACAATT+TGG + chr1_1:80730866-80730885 None:intergenic 45.0%
!!! CTTGCATTTTAGAGTGAGGG+GGG - chr1_1:80731474-80731493 Msa0047660:intron 45.0%
GGACGAAGTAGTAACAGCAA+AGG - chr1_1:80731710-80731729 Msa0047660:CDS 45.0%
! GTAACTACGTACGCCAGTTT+TGG - chr1_1:80731842-80731861 Msa0047660:intron 45.0%
! TTCTTATTGAAGGCACGTGC+GGG + chr1_1:80731875-80731894 None:intergenic 45.0%
! CTTCTTATTGAAGGCACGTG+CGG + chr1_1:80731876-80731895 None:intergenic 45.0%
GCACCGAGACTTCTTATTGA+AGG + chr1_1:80731885-80731904 None:intergenic 45.0%
CATTGACATGAAAGCCACTC+TGG + chr1_1:80732102-80732121 None:intergenic 45.0%
CAGAGTGGCTTTCATGTCAA+TGG - chr1_1:80732100-80732119 Msa0047660:intron 45.0%
!!! CAGTTTTTAGGTGTCACCCT+TGG - chr1_1:80732533-80732552 Msa0047660:CDS 45.0%
GTCACCCTTGGAATGATCTT+TGG - chr1_1:80732545-80732564 Msa0047660:CDS 45.0%
GGAATGGACGCGATTGGATT+TGG - chr1_1:80730084-80730103 Msa0047660:three_prime_UTR 50.0%
TTTGGAAGTGGGACCCGAAA+CGG - chr1_1:80730124-80730143 Msa0047660:three_prime_UTR 50.0%
GCGTCGGATTCGTTCGAATT+CGG - chr1_1:80730157-80730176 Msa0047660:three_prime_UTR 50.0%
CGTCGGATTCGTTCGAATTC+GGG - chr1_1:80730158-80730177 Msa0047660:three_prime_UTR 50.0%
CGGAGGTGGTTATCAGTTTC+CGG - chr1_1:80730199-80730218 Msa0047660:three_prime_UTR 50.0%
ACCAGTAAGAGTAAGCGACG+CGG + chr1_1:80730243-80730262 None:intergenic 50.0%
GAGTGGTGAAAATGCCTCTC+AGG - chr1_1:80730307-80730326 Msa0047660:intron 50.0%
CTTGAGGTCTGTCATGACTC+TGG - chr1_1:80730411-80730430 Msa0047660:three_prime_UTR 50.0%
GCTCTGCGAATGACTTCCTA+TGG - chr1_1:80730634-80730653 Msa0047660:intron 50.0%
! GGATTCCTTTTCTATGGCCC+TGG - chr1_1:80730655-80730674 Msa0047660:intron 50.0%
GGTACCAGGCAAAAGAACCA+GGG + chr1_1:80730675-80730694 None:intergenic 50.0%
TGGTACCAGGCAAAAGAACC+AGG + chr1_1:80730676-80730695 None:intergenic 50.0%
ATGGTCAAGCAACTGGTACC+AGG + chr1_1:80730689-80730708 None:intergenic 50.0%
GGAGACAATGGTCAAGCAAC+TGG + chr1_1:80730696-80730715 None:intergenic 50.0%
! GTTGGGTCCATGTGTCATTG+CGG - chr1_1:80730872-80730891 Msa0047660:intron 50.0%
TGCGGGTGTTCAACCAAAAC+TGG + chr1_1:80731858-80731877 None:intergenic 50.0%
GGAAAGACCGGAAACATGCT+GGG - chr1_1:80732507-80732526 Msa0047660:CDS 50.0%
! CATGCTGGGAGGCAGTTTTT+AGG - chr1_1:80732521-80732540 Msa0047660:CDS 50.0%
GACGCGATTGGATTTGGGAG+TGG - chr1_1:80730090-80730109 Msa0047660:three_prime_UTR 55.0%
! GACCCGAAACGGATTCTCGA+CGG - chr1_1:80730135-80730154 Msa0047660:three_prime_UTR 55.0%
ACGCCGTCGAGAATCCGTTT+CGG + chr1_1:80730141-80730160 None:intergenic 55.0%
! AAACGGATTCTCGACGGCGT+CGG - chr1_1:80730141-80730160 Msa0047660:three_prime_UTR 55.0%
! CGTTCGAATTCGGGTTCACC+TGG - chr1_1:80730167-80730186 Msa0047660:three_prime_UTR 55.0%
GCAGTTAACGCCTGCTTCAC+CGG + chr1_1:80730221-80730240 None:intergenic 55.0%
CGATTGCTCAGCTCAGTAGC+CGG - chr1_1:80730267-80730286 Msa0047660:three_prime_UTR 55.0%
!! ATGGCCCTGGTTCTTTTGCC+TGG - chr1_1:80730668-80730687 Msa0047660:intron 55.0%
AAAGCCACTCTGGCTGGAAG+AGG + chr1_1:80732092-80732111 None:intergenic 55.0%
GACATGAAAGCCACTCTGGC+TGG + chr1_1:80732098-80732117 None:intergenic 55.0%
CGGAAAGACCGGAAACATGC+TGG - chr1_1:80732506-80732525 Msa0047660:CDS 55.0%
AAGACCGGAAACATGCTGGG+AGG - chr1_1:80732510-80732529 Msa0047660:CDS 55.0%
ACTGCCTCCCAGCATGTTTC+CGG + chr1_1:80732517-80732536 None:intergenic 55.0%
TGCGAGGGAATGGACGCGAT+TGG - chr1_1:80730078-80730097 Msa0047660:three_prime_UTR 60.0%
CGCCGTCGAGAATCCGTTTC+GGG + chr1_1:80730140-80730159 None:intergenic 60.0%
CTGATAACCACCTCCGACGG+CGG + chr1_1:80730195-80730214 None:intergenic 60.0%
GCCGCGTCGCTTACTCTTAC+TGG - chr1_1:80730239-80730258 Msa0047660:three_prime_UTR 60.0%
TTGCTCAGCTCAGTAGCCGG+TGG - chr1_1:80730270-80730289 Msa0047660:three_prime_UTR 60.0%
GGTTCACCTGGTTCCGCCGT+CGG - chr1_1:80730179-80730198 Msa0047660:three_prime_UTR 65.0%
GGTGCCTCTTCCAGCCAGAG+TGG - chr1_1:80732085-80732104 Msa0047660:intron 65.0%
TCACCTGGTTCCGCCGTCGG+AGG - chr1_1:80730182-80730201 Msa0047660:three_prime_UTR 70.0%
CCACCTCCGACGGCGGAACC+AGG + chr1_1:80730188-80730207 None:intergenic 75.0%
CCTGGTTCCGCCGTCGGAGG+TGG - chr1_1:80730185-80730204 Msa0047660:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80729827 80732777 80729827 ID=Msa0047660;Name=Msa0047660
chr1_1 mRNA 80729827 80732777 80729827 ID=Msa0047660-mRNA-1;Parent=Msa0047660;Name=Msa0047660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=208|1|1|1|0.6|0.5|6|528|236
chr1_1 exon 80729827 80730301 80729827 ID=Msa0047660-mRNA-1:exon:27901;Parent=Msa0047660-mRNA-1
chr1_1 exon 80730382 80730522 80730382 ID=Msa0047660-mRNA-1:exon:27900;Parent=Msa0047660-mRNA-1
chr1_1 exon 80731494 80731533 80731494 ID=Msa0047660-mRNA-1:exon:27899;Parent=Msa0047660-mRNA-1
chr1_1 exon 80731620 80731752 80731620 ID=Msa0047660-mRNA-1:exon:27898;Parent=Msa0047660-mRNA-1
chr1_1 exon 80731857 80732012 80731857 ID=Msa0047660-mRNA-1:exon:27897;Parent=Msa0047660-mRNA-1
chr1_1 exon 80732276 80732777 80732276 ID=Msa0047660-mRNA-1:exon:27896;Parent=Msa0047660-mRNA-1
chr1_1 five_prime_UTR 80732570 80732777 80732570 ID=Msa0047660-mRNA-1:five_prime_utr;Parent=Msa0047660-mRNA-1
chr1_1 CDS 80732276 80732569 80732276 ID=Msa0047660-mRNA-1:cds;Parent=Msa0047660-mRNA-1
chr1_1 CDS 80731857 80732012 80731857 ID=Msa0047660-mRNA-1:cds;Parent=Msa0047660-mRNA-1
chr1_1 CDS 80731620 80731752 80731620 ID=Msa0047660-mRNA-1:cds;Parent=Msa0047660-mRNA-1
chr1_1 CDS 80731494 80731533 80731494 ID=Msa0047660-mRNA-1:cds;Parent=Msa0047660-mRNA-1
chr1_1 CDS 80730435 80730522 80730435 ID=Msa0047660-mRNA-1:cds;Parent=Msa0047660-mRNA-1
chr1_1 three_prime_UTR 80730382 80730434 80730382 ID=Msa0047660-mRNA-1:three_prime_utr;Parent=Msa0047660-mRNA-1
chr1_1 three_prime_UTR 80729827 80730301 80729827 ID=Msa0047660-mRNA-1:three_prime_utr;Parent=Msa0047660-mRNA-1
Gene Sequence

>Msa0047660

ATGTTTCAGACTCACATAGCGAAAAGTTGCGTATTTTTTTGTGTGCGAGGGAATGGACGCGATTGGATTTGGGAGTGGATTTTTCGGGTTTTGGAAGTGGGACCCGAAACGGATTCTCGACGGCGTCGGATTCGTTCGAATTCGGGTTCACCTGGTTCCGCCGTCGGAGGTGGTTATCAGTTTCCGGTGAAGCAGGCGTTAACTGCCGCGTCGCTTACTCTTACTGGTGACACGATTGCTCAGCTCAGTAGCCGGTGGAACAAAGCTAAAGAGAGTGGTGAAAATGCCTCTCAGGATGTATTGTCGAAGCTTCTTTCAGAACACGATTTGCTACGTGCTCTGCGAATGACTTCCTATGGATTCCTTTTCTATGGCCCTGGTTCTTTTGCCTGGTACCAGTTGCTTGACCATTGTCTCCCAAAGCCAAATGTCCAGAACCTAATGTTAAAGGTTTTACTAAACCAAATTGTGTTGGGTCCATGTGTCATTGCGGTTATCTTTGCATGGAACAATTTATGGCAACAAAAGCTTTCAGAGCTTCCGGAAAAATACAAAAGAGATGCTCTTCCCACTTTACTTTATGGTTTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTGGGTGGTGCCTCTTCCAGCCAGAGTGGCTTTCATGTCAATGGGCTCAATATTTTGGAATTTTTACCTATCATCAACTATGAACAAGTAA

Protein sequence

>Msa0047660

MFQTHIAKSCVFFCVRGNGRDWIWEWIFRVLEVGPETDSRRRRIRSNSGSPGSAVGGGYQFPVKQALTAASLTLTGDTIAQLSSRWNKAKESGENASQDVLSKLLSEHDLLRALRMTSYGFLFYGPGSFAWYQLLDHCLPKPNVQNLMLKVLLNQIVLGPCVIAVIFAWNNLWQQKLSELPEKYKRDALPTLLYGFRFWIPVSVLNFWVVPLPARVAFMSMGSIFWNFYLSSTMNK*