AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0870130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870130 MtrunA17_Chr6g0451601 97.931 145 2 1 1 145 1 144 6.05e-105 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870130 AT2G04700.3 74.658 146 36 1 1 145 1 146 2.63e-78 228
Msa0870130 AT2G04700.1 74.658 146 36 1 1 145 1 146 2.63e-78 228
Msa0870130 AT2G04700.2 63.529 85 29 1 63 145 6 90 1.78e-33 113

Find 55 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGGCTGCGCAAGGATTT+TGG 0.152975 6_1:-4412311 Msa0870130:CDS
TATGGGTTAGGCCATTTATA+TGG 0.210509 6_1:+4411367 None:intergenic
TCATCTGTGCCCCATATAAA+TGG 0.242004 6_1:-4411378 Msa0870130:three_prime_UTR
GTGCACCCAATGAATCTTTA+TGG 0.264541 6_1:+4412700 None:intergenic
TTTCATATCTTTATCGATAT+CGG 0.284959 6_1:-4411282 Msa0870130:three_prime_UTR
AAAAGAATGTTCCTGATTTA+CGG 0.288914 6_1:+4414201 None:intergenic
GATCTGTGACAAAGTAAGTA+TGG 0.291489 6_1:+4411349 None:intergenic
TAACACAAAATTGTATCTTT+TGG 0.294213 6_1:-4416282 Msa0870130:five_prime_UTR
ACGGAGAGGGGAAGGGGCGG+AGG 0.323995 6_1:+4416148 None:intergenic
AGGGGAAGGGGCGGAGGAAA+CGG 0.327151 6_1:+4416154 None:intergenic
TCTGCTATGAAATGTGAAAA+TGG 0.355164 6_1:+4416225 None:intergenic
GTGCACCACTCTGCCCTTGC+CGG 0.356354 6_1:-4412683 Msa0870130:intron
GCGACGACGGAGAGGGGAAG+GGG 0.358018 6_1:+4416142 None:intergenic
GGCTGACCATAAAGATTCAT+TGG 0.360393 6_1:-4412706 Msa0870130:CDS
TCGCCGGCAAAATCATTATC+AGG 0.385886 6_1:+4411686 None:intergenic
ACGACGGAGAGGGGAAGGGG+CGG 0.395791 6_1:+4416145 None:intergenic
GAGCAATATGCCCGTAAATC+AGG 0.400997 6_1:-4414212 Msa0870130:CDS
ATGGGTTAGGCCATTTATAT+GGG 0.403708 6_1:+4411368 None:intergenic
AAAGAATGTTCCTGATTTAC+GGG 0.415753 6_1:+4414202 None:intergenic
CGGCGACGACGGAGAGGGGA+AGG 0.427256 6_1:+4416140 None:intergenic
TGCCTTGCAGACTATCACCT+TGG 0.428260 6_1:-4411551 Msa0870130:intron
TTACATTGAGCTCGAACGAC+GGG 0.430081 6_1:+4416107 None:intergenic
GAAGCTTGAGAGGTCATTGC+TGG 0.451516 6_1:+4416191 None:intergenic
ATAAATCAGTTGAAATTATG+AGG 0.465770 6_1:-4414244 Msa0870130:CDS
TGACAAAGTAAGTATGGGTT+AGG 0.474066 6_1:+4411355 None:intergenic
GCTGACCATAAAGATTCATT+GGG 0.479818 6_1:-4412705 Msa0870130:CDS
CTCTCTCTCATGGGAACACA+CGG 0.481015 6_1:+4412282 None:intergenic
AAATGAAAGTTATGAAATGA+AGG 0.495288 6_1:+4411325 None:intergenic
ATGTGCCTACCTCTCTCTCA+TGG 0.500306 6_1:+4412272 None:intergenic
GGCGACGACGGAGAGGGGAA+GGG 0.503233 6_1:+4416141 None:intergenic
AGTAACTGCTGTTGTTATCA+AGG 0.507865 6_1:-4414165 Msa0870130:intron
TGATTCTTTAATTTCATCCA+AGG 0.519163 6_1:+4411534 None:intergenic
CGGAATTACCTGTTCATCGC+CGG 0.528238 6_1:+4411670 None:intergenic
ATTTCAACTGATTTATCAGA+CGG 0.530268 6_1:+4414251 None:intergenic
TTTACATTGAGCTCGAACGA+CGG 0.560983 6_1:+4416106 None:intergenic
AGCGAAGGTTGAAGCTTGAG+AGG 0.562231 6_1:+4416181 None:intergenic
CAAGAAGTATTTACCGGCAA+GGG 0.563318 6_1:+4412670 None:intergenic
ATCTGTGACAAAGTAAGTAT+GGG 0.563741 6_1:+4411350 None:intergenic
TGCTGCGGCGACGACGGAGA+GGG 0.565512 6_1:+4416135 None:intergenic
GAACGACGGGGAAGGTGCTG+CGG 0.574422 6_1:+4416120 None:intergenic
TGTGCCTACCTCTCTCTCAT+GGG 0.575835 6_1:+4412273 None:intergenic
GGAAGGTGCTGCGGCGACGA+CGG 0.586461 6_1:+4416129 None:intergenic
GCTGCGGCGACGACGGAGAG+GGG 0.589010 6_1:+4416136 None:intergenic
ACAAGAAGTATTTACCGGCA+AGG 0.590984 6_1:+4412669 None:intergenic
AAAGCTGCTGAGGCTGCGCA+AGG 0.592198 6_1:-4412318 Msa0870130:CDS
CGTGTGTTCCCATGAGAGAG+AGG 0.615907 6_1:-4412281 Msa0870130:intron
TTATGACGATAAAGCTGCTG+AGG 0.616351 6_1:-4412328 Msa0870130:CDS
TTGAGCTCGAACGACGGGGA+AGG 0.617813 6_1:+4416112 None:intergenic
GTGCTGCGGCGACGACGGAG+AGG 0.621027 6_1:+4416134 None:intergenic
ATGTGAAAATGGTGTTTCTG+TGG 0.628860 6_1:+4416236 None:intergenic
GGAGGAAACGGAGAGAGCGA+AGG 0.629867 6_1:+4416166 None:intergenic
TGGGTTAGGCCATTTATATG+GGG 0.646643 6_1:+4411369 None:intergenic
TACATTGAGCTCGAACGACG+GGG 0.648508 6_1:+4416108 None:intergenic
TCTCTCTCATGGGAACACAC+GGG 0.712722 6_1:+4412283 None:intergenic
ATTTACCGGCAAGGGCAGAG+TGG 0.719195 6_1:+4412678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAAAAAGTTAAAAATT+TGG + chr6_1:4411500-4411519 None:intergenic 10.0%
!!! TTTTTTAAGAAAAATTGTTT+TGG - chr6_1:4412488-4412507 Msa0870130:intron 10.0%
!!! ATTTTGAAAAAGTTATATTT+CGG + chr6_1:4412831-4412850 None:intergenic 10.0%
!!! TTTAAATTTTACTATGTTAT+AGG + chr6_1:4415477-4415496 None:intergenic 10.0%
!!! TTTGATTTTGATTTTTTTCA+TGG - chr6_1:4411538-4411557 Msa0870130:CDS 15.0%
!!! TGATTATGTAAAATTGATTT+TGG - chr6_1:4411778-4411797 Msa0870130:intron 15.0%
!! TGATATTAGATATATGAAAT+TGG - chr6_1:4412553-4412572 Msa0870130:intron 15.0%
!!! AATAATGGAAATAACATATA+CGG + chr6_1:4413643-4413662 None:intergenic 15.0%
!! TTTGAAAATGTATTTATTAG+TGG - chr6_1:4413951-4413970 Msa0870130:intron 15.0%
!!! GATATTTTGTTTAAAGATAT+TGG - chr6_1:4415535-4415554 Msa0870130:intron 15.0%
!!! ATTTCATAACTTTCATTTTT+TGG - chr6_1:4416253-4416272 Msa0870130:five_prime_UTR 15.0%
!!! AGATACAATTTTGTGTTATA+TGG + chr6_1:4411289-4411308 None:intergenic 20.0%
!!! TAACACAAAATTGTATCTTT+TGG - chr6_1:4411291-4411310 Msa0870130:three_prime_UTR 20.0%
!!! CAAATTTGTATTTAACTTGA+TGG + chr6_1:4412957-4412976 None:intergenic 20.0%
!!! ATGACATGAATTTTTAAGTA+CGG - chr6_1:4412997-4413016 Msa0870130:intron 20.0%
!! TGAACTTTCTAAATATATAC+CGG - chr6_1:4413072-4413091 Msa0870130:intron 20.0%
!! ATAAATCAGTTGAAATTATG+AGG - chr6_1:4413329-4413348 Msa0870130:intron 20.0%
!! ATGAAACTGCAATTTATATT+TGG + chr6_1:4413481-4413500 None:intergenic 20.0%
!!! ATAATGGAAATAACATATAC+GGG + chr6_1:4413642-4413661 None:intergenic 20.0%
!!! TCGAACCTAATTTAAATTTT+TGG - chr6_1:4414158-4414177 Msa0870130:intron 20.0%
!! CCATTCCAAAAATTTAAATT+AGG + chr6_1:4414166-4414185 None:intergenic 20.0%
!!! CCTAATTTAAATTTTTGGAA+TGG - chr6_1:4414163-4414182 Msa0870130:intron 20.0%
!!! TAAATTTTTGGAATGGATAA+TGG - chr6_1:4414170-4414189 Msa0870130:CDS 20.0%
!! TAGAACACTATACTAATTTA+TGG - chr6_1:4414244-4414263 Msa0870130:CDS 20.0%
!! AGAACACTATACTAATTTAT+GGG - chr6_1:4414245-4414264 Msa0870130:CDS 20.0%
!! ATCATAACAAAATTTACACA+GGG + chr6_1:4414509-4414528 None:intergenic 20.0%
!! AAAAACAAATATGGAAATGA+AGG - chr6_1:4414640-4414659 Msa0870130:intron 20.0%
!! AAAACAAATATGGAAATGAA+GGG - chr6_1:4414641-4414660 Msa0870130:intron 20.0%
!!! ATATGTTATTTGTCAAGAAA+TGG - chr6_1:4415706-4415725 Msa0870130:intron 20.0%
!! AGTTAAGAAAACAATATTCT+GGG + chr6_1:4415815-4415834 None:intergenic 20.0%
!!! TATTTTGATAAACAGAATCA+CGG + chr6_1:4415926-4415945 None:intergenic 20.0%
!!! TAATAATCTGTTTGTTTTGT+TGG + chr6_1:4415967-4415986 None:intergenic 20.0%
!! AAATGAAAGTTATGAAATGA+AGG + chr6_1:4416251-4416270 None:intergenic 20.0%
!! TTTCATATCTTTATCGATAT+CGG - chr6_1:4416291-4416310 Msa0870130:five_prime_UTR 20.0%
!! TGTTTAGTAAGTGTTGTTAA+TGG - chr6_1:4411620-4411639 Msa0870130:intron 25.0%
! TCTTGAATTTAGTGTATGTT+TGG - chr6_1:4411722-4411741 Msa0870130:intron 25.0%
!! TCAAGTAGAATCAATTTTGA+AGG - chr6_1:4411916-4411935 Msa0870130:intron 25.0%
!! TACACTTATAGGATCAATTT+TGG - chr6_1:4411986-4412005 Msa0870130:intron 25.0%
!!! AGTATATGTTTTGATATGTC+TGG - chr6_1:4412088-4412107 Msa0870130:intron 25.0%
!! GAACATGAAGTTAAGATTTT+TGG - chr6_1:4412152-4412171 Msa0870130:intron 25.0%
! AAAGTGAATTGAATGTAAAG+TGG + chr6_1:4412251-4412270 None:intergenic 25.0%
!! CATTGAAAATCAATTTTGTG+TGG - chr6_1:4412286-4412305 Msa0870130:CDS 25.0%
!! TGTCAAATTTGAAAGCTTTT+TGG - chr6_1:4412370-4412389 Msa0870130:intron 25.0%
!! GTCAAATTTGAAAGCTTTTT+GGG - chr6_1:4412371-4412390 Msa0870130:intron 25.0%
! TCTAATATCAGTCATAATAC+TGG + chr6_1:4412543-4412562 None:intergenic 25.0%
! TGTTCTCATAAAATTGTTGA+TGG - chr6_1:4412620-4412639 Msa0870130:intron 25.0%
!!! GGAGTTTAAAAGTACTTTTT+TGG - chr6_1:4412724-4412743 Msa0870130:intron 25.0%
! GTTCAACATATATAACATTG+CGG - chr6_1:4413161-4413180 Msa0870130:intron 25.0%
! TTCAACATATATAACATTGC+GGG - chr6_1:4413162-4413181 Msa0870130:intron 25.0%
! TTTCTATAGAAATAATGTGC+TGG - chr6_1:4413285-4413304 Msa0870130:intron 25.0%
!! ATTTCAACTGATTTATCAGA+CGG + chr6_1:4413325-4413344 None:intergenic 25.0%
! AAAAGAATGTTCCTGATTTA+CGG + chr6_1:4413375-4413394 None:intergenic 25.0%
!! GTTATTTCCATTATTCAACT+TGG - chr6_1:4413648-4413667 Msa0870130:intron 25.0%
! CATTATTCAACTTGGAATTT+GGG - chr6_1:4413656-4413675 Msa0870130:intron 25.0%
! ACGGTAAGTAATTTAAGTAT+CGG + chr6_1:4413695-4413714 None:intergenic 25.0%
!! AAAAAACAAGTTGAGAAAGA+AGG + chr6_1:4413737-4413756 None:intergenic 25.0%
! TTCAAACCATATCTGATTAA+AGG + chr6_1:4413937-4413956 None:intergenic 25.0%
! GAAAATGTATTTATTAGTGG+TGG - chr6_1:4413954-4413973 Msa0870130:intron 25.0%
! AATTCGTTGCATTTATACTT+CGG + chr6_1:4414044-4414063 None:intergenic 25.0%
!!! AATCTTCCTAAAAGTACTTT+GGG + chr6_1:4414314-4414333 None:intergenic 25.0%
!!! AAATCTTCCTAAAAGTACTT+TGG + chr6_1:4414315-4414334 None:intergenic 25.0%
!! AACGTTTCTGTTTTATATAC+AGG - chr6_1:4414346-4414365 Msa0870130:intron 25.0%
! ATCAAAACAAAATTCACACA+GGG + chr6_1:4414456-4414475 None:intergenic 25.0%
! GATCATAACAAAATTTACAC+AGG + chr6_1:4414510-4414529 None:intergenic 25.0%
!! TATTTTACGTTAAGAAACAG+AGG + chr6_1:4414532-4414551 None:intergenic 25.0%
!! GAAAATTTTCCTATACATCT+TGG - chr6_1:4414611-4414630 Msa0870130:intron 25.0%
!! AAGTTTGAAAATGAGTTTTC+CGG - chr6_1:4414712-4414731 Msa0870130:intron 25.0%
! CTGATAACAGATATTTACTT+TGG - chr6_1:4414797-4414816 Msa0870130:intron 25.0%
!!! TACTGATATTGTTTCTACTT+TGG - chr6_1:4414834-4414853 Msa0870130:intron 25.0%
!!! GTAAAACAAGAAGTATTTAC+CGG + chr6_1:4414912-4414931 None:intergenic 25.0%
! TATTTAATAACACTGCAACA+AGG + chr6_1:4414934-4414953 None:intergenic 25.0%
! TTAAACAAACTGATAGTTTC+TGG - chr6_1:4415492-4415511 Msa0870130:intron 25.0%
! TAAACAAACTGATAGTTTCT+GGG - chr6_1:4415493-4415512 Msa0870130:intron 25.0%
! GTTATTACAAAATACGATCA+TGG + chr6_1:4415632-4415651 None:intergenic 25.0%
! TATAAACTAAGAAAGTCACT+CGG + chr6_1:4415654-4415673 None:intergenic 25.0%
! GACTTTCTTAGTTTATATCT+TGG - chr6_1:4415657-4415676 Msa0870130:intron 25.0%
!! ACAAATAACATATTTAGAGC+TGG + chr6_1:4415699-4415718 None:intergenic 25.0%
! TTAAGAAAACAATATTCTGG+GGG + chr6_1:4415813-4415832 None:intergenic 25.0%
! GTTAAGAAAACAATATTCTG+GGG + chr6_1:4415814-4415833 None:intergenic 25.0%
! GAGTTAAGAAAACAATATTC+TGG + chr6_1:4415816-4415835 None:intergenic 25.0%
!! ATTGTTTTCTTAACTCATTG+TGG - chr6_1:4415820-4415839 Msa0870130:intron 25.0%
!! TGATTCTTTAATTTCATCCA+AGG + chr6_1:4416042-4416061 None:intergenic 25.0%
!!! ACTGTATCTTTTGAAAAACA+AGG - chr6_1:4416119-4416138 Msa0870130:CDS 25.0%
!!! CTGTATCTTTTGAAAAACAA+GGG - chr6_1:4416120-4416139 Msa0870130:CDS 25.0%
TCTGCTATGAAATGTGAAAA+TGG + chr6_1:4411351-4411370 None:intergenic 30.0%
TTACCATGAAAAATCCAACT+GGG + chr6_1:4411564-4411583 None:intergenic 30.0%
TTTACCATGAAAAATCCAAC+TGG + chr6_1:4411565-4411584 None:intergenic 30.0%
! TAGTAAGTGTTGTTAATGGT+TGG - chr6_1:4411624-4411643 Msa0870130:intron 30.0%
AGACTCAATTCTACACTTAT+AGG - chr6_1:4411975-4411994 Msa0870130:intron 30.0%
ATTGAATGTAAAGTGGTGTT+TGG + chr6_1:4412244-4412263 None:intergenic 30.0%
CAGAAGTTTGAACATGTAAA+AGG - chr6_1:4412400-4412419 Msa0870130:intron 30.0%
TTTATTATTTACACCTCCAC+AGG + chr6_1:4412453-4412472 None:intergenic 30.0%
ATATAAACGGACACATAAGA+TGG + chr6_1:4412893-4412912 None:intergenic 30.0%
!!! GTTTGAATGTTAGTTTTCTG+TGG - chr6_1:4413213-4413232 Msa0870130:intron 30.0%
TGTTGTTGTGCTTTCAATTT+CGG - chr6_1:4413244-4413263 Msa0870130:intron 30.0%
AAAGAATGTTCCTGATTTAC+GGG + chr6_1:4413374-4413393 None:intergenic 30.0%
CAATATGTGCATCAAACTAA+AGG + chr6_1:4413507-4413526 None:intergenic 30.0%
!! GTTTTGTTAAACATGAGTCA+AGG - chr6_1:4413567-4413586 Msa0870130:intron 30.0%
! CCAAATTCCAAGTTGAATAA+TGG + chr6_1:4413658-4413677 None:intergenic 30.0%
CCATTATTCAACTTGGAATT+TGG - chr6_1:4413655-4413674 Msa0870130:intron 30.0%
TTACTTACCGTTCAAAATGA+TGG - chr6_1:4413704-4413723 Msa0870130:intron 30.0%
TACTTACCGTTCAAAATGAT+GGG - chr6_1:4413705-4413724 Msa0870130:intron 30.0%
!!! TTGTTTTTTGAGCTCTGTAT+TGG - chr6_1:4413748-4413767 Msa0870130:intron 30.0%
!! CTGTATTGGTTTCAAATGTT+AGG - chr6_1:4413762-4413781 Msa0870130:intron 30.0%
!! TGCTGATATATGTTTCTAGT+TGG - chr6_1:4413791-4413810 Msa0870130:intron 30.0%
!! GCTGATATATGTTTCTAGTT+GGG - chr6_1:4413792-4413811 Msa0870130:intron 30.0%
!!! ATGTTTCTAGTTGGGTTTTT+AGG - chr6_1:4413800-4413819 Msa0870130:intron 30.0%
! ACCTAGAAGTTTTACGTTAT+GGG - chr6_1:4413842-4413861 Msa0870130:intron 30.0%
AACCATATCTGATTAAAGGT+GGG + chr6_1:4413933-4413952 None:intergenic 30.0%
AAACCATATCTGATTAAAGG+TGG + chr6_1:4413934-4413953 None:intergenic 30.0%
!! ACTTCGGCACTTTAAAATTT+GGG + chr6_1:4414028-4414047 None:intergenic 30.0%
!! TACTTCGGCACTTTAAAATT+TGG + chr6_1:4414029-4414048 None:intergenic 30.0%
TAAATGCAACGAATTTGAAG+TGG - chr6_1:4414049-4414068 Msa0870130:intron 30.0%
!! GTAATACCCAAAGTACTTTT+AGG - chr6_1:4414305-4414324 Msa0870130:intron 30.0%
TAAAACAGAAACGTTGTGTT+TGG + chr6_1:4414341-4414360 None:intergenic 30.0%
ATTCAAAAATCATCTTCCCA+TGG - chr6_1:4414396-4414415 Msa0870130:intron 30.0%
GTTCAAAAAACAAGTACCAT+GGG + chr6_1:4414415-4414434 None:intergenic 30.0%
TGTTCAAAAAACAAGTACCA+TGG + chr6_1:4414416-4414435 None:intergenic 30.0%
GATCAAAACAAAATTCACAC+AGG + chr6_1:4414457-4414476 None:intergenic 30.0%
AAAACCAGAAGATCAAAACA+GGG + chr6_1:4414480-4414499 None:intergenic 30.0%
TAAAACCAGAAGATCAAAAC+AGG + chr6_1:4414481-4414500 None:intergenic 30.0%
! CAATTAGGAGCATATAAAAG+TGG + chr6_1:4414555-4414574 None:intergenic 30.0%
ACATGATCAATTGTGCAATT+AGG + chr6_1:4414570-4414589 None:intergenic 30.0%
!! TGGTAGTGGAAAAACAAATA+TGG - chr6_1:4414631-4414650 Msa0870130:intron 30.0%
TTATCAGTTCTATGCATACA+CGG + chr6_1:4414784-4414803 None:intergenic 30.0%
!! TATTGTTTCTACTTTGGAAC+AGG - chr6_1:4414840-4414859 Msa0870130:intron 30.0%
!! ATTGTTTCTACTTTGGAACA+GGG - chr6_1:4414841-4414860 Msa0870130:intron 30.0%
! TAATTTGGACAAACTGCTTT+TGG - chr6_1:4414990-4415009 Msa0870130:intron 30.0%
AGTACAAAATGTTGTGCAAT+AGG - chr6_1:4415030-4415049 Msa0870130:intron 30.0%
ACAAAATTGTCTTTGCAACA+AGG + chr6_1:4415118-4415137 None:intergenic 30.0%
GTGTCTTTATTCTATAGTTC+TGG - chr6_1:4415136-4415155 Msa0870130:intron 30.0%
!! TCTTTATTCTATAGTTCTGG+CGG - chr6_1:4415139-4415158 Msa0870130:intron 30.0%
! TCCCAAAATTACTGTGTTTT+AGG - chr6_1:4415220-4415239 Msa0870130:intron 30.0%
! GCCTAAAACACAGTAATTTT+GGG + chr6_1:4415224-4415243 None:intergenic 30.0%
! TGCCTAAAACACAGTAATTT+TGG + chr6_1:4415225-4415244 None:intergenic 30.0%
TGATAACTTAAAGTTGGAGA+AGG + chr6_1:4415353-4415372 None:intergenic 30.0%
! CGAACTTGATAACTTAAAGT+TGG + chr6_1:4415359-4415378 None:intergenic 30.0%
! GTTTGATACAGTTGTTTCAT+AGG + chr6_1:4415596-4415615 None:intergenic 30.0%
CTTAGTTTATATCTTGGTTG+AGG - chr6_1:4415663-4415682 Msa0870130:intron 30.0%
!!! TGTGGTTTTGTTTGATAGAA+AGG - chr6_1:4415838-4415857 Msa0870130:intron 30.0%
ATCTGTGACAAAGTAAGTAT+GGG + chr6_1:4416226-4416245 None:intergenic 30.0%
!! CTGTGGTTATCAAGTTTTGT+TGG + chr6_1:4411323-4411342 None:intergenic 35.0%
! ATGTGAAAATGGTGTTTCTG+TGG + chr6_1:4411340-4411359 None:intergenic 35.0%
GCATTTCAACAAACATCTTC+TGG + chr6_1:4411669-4411688 None:intergenic 35.0%
GCAAAATCAATTCTACTCGA+AGG - chr6_1:4411938-4411957 Msa0870130:intron 35.0%
!! GTTTGGCTTCACTTTTAGAA+TGG + chr6_1:4412012-4412031 None:intergenic 35.0%
TAATCAATTATGACTGCCAC+AGG + chr6_1:4412059-4412078 None:intergenic 35.0%
GTGGCAGTCATAATTGATTA+TGG - chr6_1:4412059-4412078 Msa0870130:intron 35.0%
GCAGTCATAATTGATTATGG+AGG - chr6_1:4412062-4412081 Msa0870130:intron 35.0%
CTTCATGTTCGAATCAATTC+AGG + chr6_1:4412142-4412161 None:intergenic 35.0%
GTAGCAAATAAGTGCATGAT+TGG + chr6_1:4412314-4412333 None:intergenic 35.0%
! TTATTTGCTACCTCGGTAAT+TGG - chr6_1:4412323-4412342 Msa0870130:CDS 35.0%
! TATTTGCTACCTCGGTAATT+GGG - chr6_1:4412324-4412343 Msa0870130:CDS 35.0%
!!! TTTGAAAGCTTTTTGGGTTC+TGG - chr6_1:4412377-4412396 Msa0870130:intron 35.0%
CATAATACTGGTACCAGAAT+TGG + chr6_1:4412531-4412550 None:intergenic 35.0%
ACAGACACACTTCATATTGA+AGG - chr6_1:4412658-4412677 Msa0870130:intron 35.0%
CAGACACACTTCATATTGAA+GGG - chr6_1:4412659-4412678 Msa0870130:intron 35.0%
AGACACACTTCATATTGAAG+GGG - chr6_1:4412660-4412679 Msa0870130:intron 35.0%
! ACTAACCAGCACTTCAATTT+TGG - chr6_1:4412777-4412796 Msa0870130:intron 35.0%
ATGAAGCACGAGCATATAAA+CGG + chr6_1:4412906-4412925 None:intergenic 35.0%
TTTATATGCTCGTGCTTCAT+AGG - chr6_1:4412906-4412925 Msa0870130:intron 35.0%
TAAATATATACCGGTCTAGC+CGG - chr6_1:4413081-4413100 Msa0870130:intron 35.0%
! GAAAGCACAACAACAGAATT+TGG + chr6_1:4413239-4413258 None:intergenic 35.0%
!! ACATTCTTTTGTGCTGACAA+AGG - chr6_1:4413385-4413404 Msa0870130:intron 35.0%
AGTAACTGCTGTTGTTATCA+AGG - chr6_1:4413408-4413427 Msa0870130:intron 35.0%
CATATTGTTGCATCATGTCT+TGG - chr6_1:4413520-4413539 Msa0870130:intron 35.0%
! ACAACACCCATCATTTTGAA+CGG + chr6_1:4413714-4413733 None:intergenic 35.0%
! GACCTAGAAGTTTTACGTTA+TGG - chr6_1:4413841-4413860 Msa0870130:intron 35.0%
! CCTAGAAGTTTTACGTTATG+GGG - chr6_1:4413843-4413862 Msa0870130:intron 35.0%
! CTAGAAGTTTTACGTTATGG+GGG - chr6_1:4413844-4413863 Msa0870130:intron 35.0%
!! GGCACTTTAAAATTTGGGTA+GGG + chr6_1:4414023-4414042 None:intergenic 35.0%
ATCCTGTAATACATTGACGA+TGG - chr6_1:4414135-4414154 Msa0870130:intron 35.0%
AAACCAGAAGATCAAAACAG+GGG + chr6_1:4414479-4414498 None:intergenic 35.0%
TTTCCTATACATCTTGGTAG+TGG - chr6_1:4414617-4414636 Msa0870130:intron 35.0%
TTTCCACTACCAAGATGTAT+AGG + chr6_1:4414623-4414642 None:intergenic 35.0%
GCTGACCATAAAGATTCATT+GGG - chr6_1:4414868-4414887 Msa0870130:intron 35.0%
CAAATTATGCTACGCTATAG+TGG + chr6_1:4414977-4414996 None:intergenic 35.0%
CACTATAGCGTAGCATAATT+TGG - chr6_1:4414975-4414994 Msa0870130:intron 35.0%
TTGTACTAAATAGCGTATCG+CGG + chr6_1:4415017-4415036 None:intergenic 35.0%
TTTGGATAGCAGAAAATAGC+AGG + chr6_1:4415082-4415101 None:intergenic 35.0%
! CAAGGCAGTGTTATCAATTT+TGG + chr6_1:4415100-4415119 None:intergenic 35.0%
!! GTAATTTTGGGAGTAAGCTT+AGG + chr6_1:4415212-4415231 None:intergenic 35.0%
!! AAACTGATAGTTTCTGGGAT+CGG - chr6_1:4415498-4415517 Msa0870130:intron 35.0%
!! ACTCCTGATAATGATTTTGC+CGG - chr6_1:4415884-4415903 Msa0870130:intron 35.0%
TGAAAAACAAGGGAAGAGAA+AGG - chr6_1:4416130-4416149 Msa0870130:CDS 35.0%
!! ATGGGTTAGGCCATTTATAT+GGG + chr6_1:4416208-4416227 None:intergenic 35.0%
!! TATGGGTTAGGCCATTTATA+TGG + chr6_1:4416209-4416228 None:intergenic 35.0%
TGACAAAGTAAGTATGGGTT+AGG + chr6_1:4416221-4416240 None:intergenic 35.0%
GATCTGTGACAAAGTAAGTA+TGG + chr6_1:4416227-4416246 None:intergenic 35.0%
TTTACATTGAGCTCGAACGA+CGG + chr6_1:4411470-4411489 None:intergenic 40.0%
!!! GATTTTTTTCATGGCCCAGT+TGG - chr6_1:4411547-4411566 Msa0870130:intron 40.0%
CCAAACATAGGATGCATGTT+TGG + chr6_1:4412029-4412048 None:intergenic 40.0%
CCAAACATGCATCCTATGTT+TGG - chr6_1:4412026-4412045 Msa0870130:intron 40.0%
CATGTTCGAATCAATTCAGG+AGG + chr6_1:4412139-4412158 None:intergenic 40.0%
! CATGCACTTATTTGCTACCT+CGG - chr6_1:4412316-4412335 Msa0870130:CDS 40.0%
CATCAAAAACCCAATTACCG+AGG + chr6_1:4412336-4412355 None:intergenic 40.0%
GTAAAAGGAATGTTGTCAGC+TGG - chr6_1:4412415-4412434 Msa0870130:intron 40.0%
TTTAAACTCCCACACCAGAA+TGG + chr6_1:4412714-4412733 None:intergenic 40.0%
!!! GTACTTTTTTGGACTCGACA+TGG - chr6_1:4412735-4412754 Msa0870130:intron 40.0%
! GTACTAGGTTAATGGGTCAT+TGG + chr6_1:4413122-4413141 None:intergenic 40.0%
CAGACGAGTACTAGGTTAAT+GGG + chr6_1:4413129-4413148 None:intergenic 40.0%
TCAGACGAGTACTAGGTTAA+TGG + chr6_1:4413130-4413149 None:intergenic 40.0%
ATTAACCTAGTACTCGTCTG+AGG - chr6_1:4413129-4413148 Msa0870130:intron 40.0%
!! TAATGTGCTGGTTCTTTCAG+TGG - chr6_1:4413297-4413316 Msa0870130:intron 40.0%
CCCCATAACGTAAAACTTCT+AGG + chr6_1:4413846-4413865 None:intergenic 40.0%
GTCCCACCTTTAATCAGATA+TGG - chr6_1:4413928-4413947 Msa0870130:intron 40.0%
! CCATTACCAAAACTGGCTTA+TGG + chr6_1:4413990-4414009 None:intergenic 40.0%
!! CCATAAGCCAGTTTTGGTAA+TGG - chr6_1:4413987-4414006 Msa0870130:intron 40.0%
AACTCAGCCATTACCAAAAC+TGG + chr6_1:4413997-4414016 None:intergenic 40.0%
!!! GTTTTGGTAATGGCTGAGTT+AGG - chr6_1:4413997-4414016 Msa0870130:intron 40.0%
!! CGGCACTTTAAAATTTGGGT+AGG + chr6_1:4414024-4414043 None:intergenic 40.0%
GACCATCGTCAATGTATTAC+AGG + chr6_1:4414140-4414159 None:intergenic 40.0%
AACCTCCAAGTTTGATATGC+TGG - chr6_1:4414675-4414694 Msa0870130:intron 40.0%
ACCTCCAAGTTTGATATGCT+GGG - chr6_1:4414676-4414695 Msa0870130:intron 40.0%
TCATCCCAGCATATCAAACT+TGG + chr6_1:4414683-4414702 None:intergenic 40.0%
TCCGGATTGTCATTGTTGAT+AGG - chr6_1:4414730-4414749 Msa0870130:intron 40.0%
GCCTATCAACAATGACAATC+CGG + chr6_1:4414734-4414753 None:intergenic 40.0%
!! TTCTACTTTGGAACAGGGTT+TGG - chr6_1:4414846-4414865 Msa0870130:intron 40.0%
GGCTGACCATAAAGATTCAT+TGG - chr6_1:4414867-4414886 Msa0870130:intron 40.0%
GTGCACCCAATGAATCTTTA+TGG + chr6_1:4414876-4414895 None:intergenic 40.0%
!! CAAGAAGTATTTACCGGCAA+GGG + chr6_1:4414906-4414925 None:intergenic 40.0%
!! ACAAGAAGTATTTACCGGCA+AGG + chr6_1:4414907-4414926 None:intergenic 40.0%
TTATGACGATAAAGCTGCTG+AGG - chr6_1:4415245-4415264 Msa0870130:intron 40.0%
! GAGTGAGAAAAAGCATGCAA+TGG + chr6_1:4415868-4415887 None:intergenic 40.0%
TCATCTGTGCCCCATATAAA+TGG - chr6_1:4416195-4416214 Msa0870130:exon 40.0%
! TGGGTTAGGCCATTTATATG+GGG + chr6_1:4416207-4416226 None:intergenic 40.0%
TTACATTGAGCTCGAACGAC+GGG + chr6_1:4411469-4411488 None:intergenic 45.0%
! TGGCCCAGTTGGATTTTTCA+TGG - chr6_1:4411558-4411577 Msa0870130:intron 45.0%
CAGCTTGAACTGACCAATTC+TGG - chr6_1:4412515-4412534 Msa0870130:intron 45.0%
! TTTTTGGACTCGACATGGCT+TGG - chr6_1:4412740-4412759 Msa0870130:intron 45.0%
!! GAAGTGCTGGTTAGTCTTTC+TGG + chr6_1:4412772-4412791 None:intergenic 45.0%
!! ACCAGCACTTCAATTTTGGC+TGG - chr6_1:4412781-4412800 Msa0870130:intron 45.0%
TCCAGCCAAAATTGAAGTGC+TGG + chr6_1:4412785-4412804 None:intergenic 45.0%
CGCGCATGTGTGAATGTTAA+CGG - chr6_1:4412867-4412886 Msa0870130:intron 45.0%
TTGGTCGATCAGTGAATCAC+CGG + chr6_1:4413103-4413122 None:intergenic 45.0%
TACATCCTCAGACGAGTACT+AGG + chr6_1:4413137-4413156 None:intergenic 45.0%
TACTCGTCTGAGGATGTAAC+TGG - chr6_1:4413139-4413158 Msa0870130:intron 45.0%
GAGCAATATGCCCGTAAATC+AGG - chr6_1:4413361-4413380 Msa0870130:intron 45.0%
! TCCTCTCCATAAGCCAGTTT+TGG - chr6_1:4413981-4414000 Msa0870130:intron 45.0%
! ACCAAAACTGGCTTATGGAG+AGG + chr6_1:4413985-4414004 None:intergenic 45.0%
TCTACGTCTATCACTGTGGT+GGG + chr6_1:4414094-4414113 None:intergenic 45.0%
ATCTACGTCTATCACTGTGG+TGG + chr6_1:4414095-4414114 None:intergenic 45.0%
CAGATCTACGTCTATCACTG+TGG + chr6_1:4414098-4414117 None:intergenic 45.0%
!!! GATCCCCTGTTTTGATCTTC+TGG - chr6_1:4414473-4414492 Msa0870130:intron 45.0%
TCCCAGCATATCAAACTTGG+AGG + chr6_1:4414680-4414699 None:intergenic 45.0%
!! ATTCTATAGTTCTGGCGGTG+TGG - chr6_1:4415144-4415163 Msa0870130:intron 45.0%
GGTAGGCACATCTTTACAAC+TGG - chr6_1:4415313-4415332 Msa0870130:intron 45.0%
TCGCCGGCAAAATCATTATC+AGG + chr6_1:4415890-4415909 None:intergenic 45.0%
ATCCAAGGTGATAGTCTGCA+AGG + chr6_1:4416027-4416046 None:intergenic 45.0%
GAAGCTTGAGAGGTCATTGC+TGG + chr6_1:4411385-4411404 None:intergenic 50.0%
AGCGAAGGTTGAAGCTTGAG+AGG + chr6_1:4411395-4411414 None:intergenic 50.0%
TACATTGAGCTCGAACGACG+GGG + chr6_1:4411468-4411487 None:intergenic 50.0%
ACAGGCGTGGAACCAAACAT+AGG + chr6_1:4412041-4412060 None:intergenic 50.0%
! TATGTTTGGTTCCACGCCTG+TGG - chr6_1:4412040-4412059 Msa0870130:intron 50.0%
AATTATGACTGCCACAGGCG+TGG + chr6_1:4412054-4412073 None:intergenic 50.0%
! ACATGAGTCAAGGTGCTACG+TGG - chr6_1:4413577-4413596 Msa0870130:intron 50.0%
TACGTCTATCACTGTGGTGG+GGG + chr6_1:4414092-4414111 None:intergenic 50.0%
CTACGTCTATCACTGTGGTG+GGG + chr6_1:4414093-4414112 None:intergenic 50.0%
TCTCTCTCATGGGAACACAC+GGG + chr6_1:4415293-4415312 None:intergenic 50.0%
CTCTCTCTCATGGGAACACA+CGG + chr6_1:4415294-4415313 None:intergenic 50.0%
TGTTCCCATGAGAGAGAGGT+AGG - chr6_1:4415296-4415315 Msa0870130:intron 50.0%
TGTGCCTACCTCTCTCTCAT+GGG + chr6_1:4415303-4415322 None:intergenic 50.0%
ATGTGCCTACCTCTCTCTCA+TGG + chr6_1:4415304-4415323 None:intergenic 50.0%
! TGATTTTGCCGGCGATGAAC+AGG - chr6_1:4415895-4415914 Msa0870130:intron 50.0%
CGGAATTACCTGTTCATCGC+CGG + chr6_1:4415906-4415925 None:intergenic 50.0%
TGCCTTGCAGACTATCACCT+TGG - chr6_1:4416022-4416041 Msa0870130:intron 50.0%
CTGGCACATGTGCAAACCTG+TGG - chr6_1:4412434-4412453 Msa0870130:intron 55.0%
GCACATGTGCAAACCTGTGG+AGG - chr6_1:4412437-4412456 Msa0870130:intron 55.0%
TCTGAGTATCCGACGCGTGT+CGG - chr6_1:4412683-4412702 Msa0870130:intron 55.0%
TCGGACACTCCATTCTGGTG+TGG - chr6_1:4412702-4412721 Msa0870130:CDS 55.0%
CGGACACTCCATTCTGGTGT+GGG - chr6_1:4412703-4412722 Msa0870130:CDS 55.0%
! CAGTGAATCACCGGCTAGAC+CGG + chr6_1:4413094-4413113 None:intergenic 55.0%
ATTTACCGGCAAGGGCAGAG+TGG + chr6_1:4414898-4414917 None:intergenic 55.0%
GGCGGTGTGGTTGCATACAT+AGG - chr6_1:4415157-4415176 Msa0870130:intron 55.0%
! CTGAGGCTGCGCAAGGATTT+TGG - chr6_1:4415262-4415281 Msa0870130:intron 55.0%
CGTGTGTTCCCATGAGAGAG+AGG - chr6_1:4415292-4415311 Msa0870130:intron 55.0%
GGAGGAAACGGAGAGAGCGA+AGG + chr6_1:4411410-4411429 None:intergenic 60.0%
TTGAGCTCGAACGACGGGGA+AGG + chr6_1:4411464-4411483 None:intergenic 60.0%
! ATGGAGTGTCCGACACGCGT+CGG + chr6_1:4412695-4412714 None:intergenic 60.0%
GCGTGTCGGACACTCCATTC+TGG - chr6_1:4412697-4412716 Msa0870130:CDS 60.0%
AAAGCTGCTGAGGCTGCGCA+AGG - chr6_1:4415255-4415274 Msa0870130:intron 60.0%
AGGGGAAGGGGCGGAGGAAA+CGG + chr6_1:4411422-4411441 None:intergenic 65.0%
!! GAACGACGGGGAAGGTGCTG+CGG + chr6_1:4411456-4411475 None:intergenic 65.0%
GTGCACCACTCTGCCCTTGC+CGG - chr6_1:4414890-4414909 Msa0870130:intron 65.0%
ACGACGGAGAGGGGAAGGGG+CGG + chr6_1:4411431-4411450 None:intergenic 70.0%
GCGACGACGGAGAGGGGAAG+GGG + chr6_1:4411434-4411453 None:intergenic 70.0%
GGCGACGACGGAGAGGGGAA+GGG + chr6_1:4411435-4411454 None:intergenic 70.0%
TGCTGCGGCGACGACGGAGA+GGG + chr6_1:4411441-4411460 None:intergenic 70.0%
!! GGAAGGTGCTGCGGCGACGA+CGG + chr6_1:4411447-4411466 None:intergenic 70.0%
ACGGAGAGGGGAAGGGGCGG+AGG + chr6_1:4411428-4411447 None:intergenic 75.0%
CGGCGACGACGGAGAGGGGA+AGG + chr6_1:4411436-4411455 None:intergenic 75.0%
GCTGCGGCGACGACGGAGAG+GGG + chr6_1:4411440-4411459 None:intergenic 75.0%
GTGCTGCGGCGACGACGGAG+AGG + chr6_1:4411442-4411461 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 4411269 4416326 4411269 ID=Msa0870130;Name=Msa0870130
chr6_1 mRNA 4411269 4416326 4411269 ID=Msa0870130-mRNA-1;Parent=Msa0870130;Name=Msa0870130-mRNA-1;_AED=0.15;_eAED=0.15;_QI=119|1|1|1|1|1|6|250|145
chr6_1 exon 4411269 4411563 4411269 ID=Msa0870130-mRNA-1:exon:1441;Parent=Msa0870130-mRNA-1
chr6_1 exon 4411679 4411739 4411679 ID=Msa0870130-mRNA-1:exon:1440;Parent=Msa0870130-mRNA-1
chr6_1 exon 4412282 4412353 4412282 ID=Msa0870130-mRNA-1:exon:1439;Parent=Msa0870130-mRNA-1
chr6_1 exon 4412684 4412733 4412684 ID=Msa0870130-mRNA-1:exon:1438;Parent=Msa0870130-mRNA-1
chr6_1 exon 4414166 4414278 4414166 ID=Msa0870130-mRNA-1:exon:1437;Parent=Msa0870130-mRNA-1
chr6_1 exon 4416111 4416326 4416111 ID=Msa0870130-mRNA-1:exon:1436;Parent=Msa0870130-mRNA-1
chr6_1 five_prime_UTR 4416208 4416326 4416208 ID=Msa0870130-mRNA-1:five_prime_utr;Parent=Msa0870130-mRNA-1
chr6_1 CDS 4416111 4416207 4416111 ID=Msa0870130-mRNA-1:cds;Parent=Msa0870130-mRNA-1
chr6_1 CDS 4414166 4414278 4414166 ID=Msa0870130-mRNA-1:cds;Parent=Msa0870130-mRNA-1
chr6_1 CDS 4412684 4412733 4412684 ID=Msa0870130-mRNA-1:cds;Parent=Msa0870130-mRNA-1
chr6_1 CDS 4412282 4412353 4412282 ID=Msa0870130-mRNA-1:cds;Parent=Msa0870130-mRNA-1
chr6_1 CDS 4411679 4411739 4411679 ID=Msa0870130-mRNA-1:cds;Parent=Msa0870130-mRNA-1
chr6_1 CDS 4411519 4411563 4411519 ID=Msa0870130-mRNA-1:cds;Parent=Msa0870130-mRNA-1
chr6_1 three_prime_UTR 4411269 4411518 4411269 ID=Msa0870130-mRNA-1:three_prime_utr;Parent=Msa0870130-mRNA-1
Gene Sequence

>Msa0870130

ATGACCTCTCAAGCTTCAACCTTCGCTCTCTCCGTTTCCTCCGCCCCTTCCCCTCTCCGTCGTCGCCGCAGCACCTTCCCCGTCGTTCGAGCTCAATTGGAACCGTCTGATAAATCAGTTGAAATTATGAGGAAGTTCTCAGAGCAATATGCCCGTAAATCAGGAACATTCTTTTGTGCTGACAAAGGAGTAACTGCTGTTGTTATCAAGGGTTTGGCTGACCATAAAGATTCATTGGGTGCACCACTCTGCCCTTGCCGGCATTATGACGATAAAGCTGCTGAGGCTGCGCAAGGATTTTGGAATTGCCCGTGTGTTCCCATGAGAGAGAGAAAGGAGTGCCATTGCATGCTTTTTCTCACTCCTGATAATGATTTTGCCGGCGATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCAAATATGTAA

Protein sequence

>Msa0870130

MTSQASTFALSVSSAPSPLRRRRSTFPVVRAQLEPSDKSVEIMRKFSEQYARKSGTFFCADKGVTAVVIKGLADHKDSLGAPLCPCRHYDDKAAEAAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGDEQTITLDEIKESTANM*