Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734990 | AES98921.1 | 93.367 | 196 | 12 | 1 | 3 | 197 | 1 | 196 | 1.20e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734990 | sp|Q8GWL2|LOR7_ARATH | 46.111 | 180 | 84 | 2 | 16 | 195 | 16 | 182 | 6.26e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734990 | G7KFJ0 | 93.367 | 196 | 12 | 1 | 3 | 197 | 1 | 196 | 5.71e-131 | 375 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030300 | Msa0734990 | 0.817901 | 2.593301e-52 | -8.615850e-47 |
| Msa0610130 | Msa0734990 | 0.807971 | 3.894565e-50 | -8.615850e-47 |
| Msa0734990 | Msa0890550 | 0.806678 | 7.320623e-50 | -8.615850e-47 |
| Msa0734990 | Msa1001390 | 0.800694 | 1.278291e-48 | -8.615850e-47 |
| Msa0734990 | Msa1089320 | 0.804854 | 1.768431e-49 | -8.615850e-47 |
| Msa0734990 | Msa1254730 | 0.806876 | 6.647075e-50 | -8.615850e-47 |
| Msa0734990 | Msa1364210 | 0.807432 | 5.068789e-50 | -8.615850e-47 |
| Msa0174390 | Msa0734990 | 0.800920 | 1.149275e-48 | -8.615850e-47 |
| Msa0376910 | Msa0734990 | 0.804403 | 2.197099e-49 | -8.615850e-47 |
| Msa0453200 | Msa0734990 | 0.810100 | 1.363339e-50 | -8.615850e-47 |
| Msa0471900 | Msa0734990 | 0.810717 | 1.003124e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734990 | MtrunA17_Chr5g0432221 | 92.893 | 197 | 13 | 1 | 2 | 197 | 20 | 216 | 1.41e-134 | 375 |
| Msa0734990 | MtrunA17_Chr7g0244341 | 32.402 | 179 | 108 | 5 | 19 | 192 | 33 | 203 | 3.49e-24 | 95.1 |
| Msa0734990 | MtrunA17_Chr7g0244321 | 32.961 | 179 | 107 | 5 | 19 | 192 | 33 | 203 | 4.61e-24 | 94.4 |
| Msa0734990 | MtrunA17_Chr7g0244371 | 32.961 | 179 | 106 | 6 | 19 | 192 | 32 | 201 | 2.91e-23 | 92.4 |
| Msa0734990 | MtrunA17_Chr7g0244331 | 31.844 | 179 | 109 | 5 | 19 | 192 | 33 | 203 | 1.27e-22 | 90.9 |
| Msa0734990 | MtrunA17_Chr7g0244361 | 30.247 | 162 | 96 | 5 | 36 | 192 | 83 | 232 | 1.70e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734990 | AT2G30270.1 | 46.111 | 180 | 84 | 2 | 16 | 195 | 16 | 182 | 6.36e-46 | 150 |
| Msa0734990 | AT5G01750.2 | 25.698 | 179 | 120 | 6 | 19 | 192 | 37 | 207 | 1.84e-15 | 72.0 |
| Msa0734990 | AT3G16900.1 | 28.125 | 160 | 88 | 7 | 40 | 192 | 37 | 176 | 3.79e-12 | 62.8 |
Find 51 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCCCGACTGACGTATATT+TGG | 0.230558 | 5_1:+49986244 | None:intergenic |
| GCTTGCGACTTAAAAGTAAT+TGG | 0.281487 | 5_1:-49987773 | Msa0734990:CDS |
| TGGGACTTGGAAATGTTATA+AGG | 0.293104 | 5_1:-49987906 | Msa0734990:CDS |
| GGGAAGTGGTGATGAGAATA+AGG | 0.296657 | 5_1:-49987885 | Msa0734990:CDS |
| GGAAATGGAAACTTCAGATT+TGG | 0.316314 | 5_1:-49988921 | Msa0734990:CDS |
| AGCAAGAGTTTGGTATCCTT+TGG | 0.337774 | 5_1:+49988740 | None:intergenic |
| TTTCGCCTGACAATCTTTCC+TGG | 0.371331 | 5_1:-49986219 | Msa0734990:CDS |
| ATTGGAATCAAGCAAGAGTT+TGG | 0.382566 | 5_1:+49988730 | None:intergenic |
| TTTGGTTAAGCTTGTACATC+AGG | 0.391771 | 5_1:+49986262 | None:intergenic |
| CATGTCTAAAGACGGCGATT+TGG | 0.395269 | 5_1:-49987726 | Msa0734990:CDS |
| GATTACCAGAGTTGAGTTAG+AGG | 0.400531 | 5_1:-49987828 | Msa0734990:CDS |
| GATGAAGAGGAGTTGGGATT+GGG | 0.425075 | 5_1:+49988764 | None:intergenic |
| AGATGAAGAGGAGTTGGGAT+TGG | 0.436379 | 5_1:+49988763 | None:intergenic |
| AGTTGGGATTGGGTGGTTGA+CGG | 0.438138 | 5_1:+49988774 | None:intergenic |
| CTTTGGAGATGAAGAGGAGT+TGG | 0.446851 | 5_1:+49988757 | None:intergenic |
| TGCTGCATGATCTCTTGAAA+GGG | 0.448048 | 5_1:+49987747 | None:intergenic |
| TTAGCGTTTGCTGATGCATC+GGG | 0.457884 | 5_1:-49988818 | Msa0734990:CDS |
| TAGAGCTGCAATGCAAGAAA+AGG | 0.462142 | 5_1:-49986075 | Msa0734990:three_prime_UTR |
| TTTGGAGATGAAGAGGAGTT+GGG | 0.467401 | 5_1:+49988758 | None:intergenic |
| GGGACTTGGAAATGTTATAA+GGG | 0.475852 | 5_1:-49987905 | Msa0734990:CDS |
| TTGGAACCGAAAAGATCGAT+TGG | 0.478169 | 5_1:+49988869 | None:intergenic |
| TTCGCCTGACAATCTTTCCT+GGG | 0.479694 | 5_1:-49986218 | Msa0734990:CDS |
| GATTGGGATGTGTTGATCTT+CGG | 0.483082 | 5_1:+49988886 | None:intergenic |
| ATCGGGTAACATAGTCTTCA+AGG | 0.483954 | 5_1:-49988801 | Msa0734990:CDS |
| TAACCAAATATACGTCAGTC+GGG | 0.485446 | 5_1:-49986247 | Msa0734990:CDS |
| TGGAACCGAAAAGATCGATT+GGG | 0.488185 | 5_1:+49988870 | None:intergenic |
| GTCTAAAGACGGCGATTTGG+TGG | 0.488296 | 5_1:-49987723 | Msa0734990:CDS |
| AATTGACAAATACACACAAT+CGG | 0.494257 | 5_1:+49986097 | None:intergenic |
| ATGCTGCATGATCTCTTGAA+AGG | 0.498992 | 5_1:+49987746 | None:intergenic |
| TGATCCCAGGAAAGATTGTC+AGG | 0.502195 | 5_1:+49986214 | None:intergenic |
| CTTAGCGTTTGCTGATGCAT+CGG | 0.528232 | 5_1:-49988819 | Msa0734990:CDS |
| TGGAAATGTTATAAGGGAAG+TGG | 0.531416 | 5_1:-49987899 | Msa0734990:CDS |
| GGTATCCTTTGGAGATGAAG+AGG | 0.545069 | 5_1:+49988751 | None:intergenic |
| CATAGATCGTGGTCTTATTG+TGG | 0.557854 | 5_1:-49986193 | Msa0734990:CDS |
| TAAGATTCCACGTGGAACTC+CGG | 0.563839 | 5_1:+49988838 | None:intergenic |
| AGACGGCGATTTGGTGGCAC+AGG | 0.568219 | 5_1:-49987717 | Msa0734990:intron |
| AAACACCTCTAACTCAACTC+TGG | 0.572386 | 5_1:+49987823 | None:intergenic |
| AGCTTGTGTTAGAAGTAAAG+AGG | 0.572649 | 5_1:-49987862 | Msa0734990:CDS |
| TTAACCAAATATACGTCAGT+CGG | 0.572848 | 5_1:-49986248 | Msa0734990:CDS |
| AGACCACGATCTATGATCCC+AGG | 0.574730 | 5_1:+49986201 | None:intergenic |
| CAACTCCTCTTCATCTCCAA+AGG | 0.576391 | 5_1:-49988756 | Msa0734990:CDS |
| GAAGAGGAGTTGGGATTGGG+TGG | 0.577971 | 5_1:+49988767 | None:intergenic |
| AAGAGAGACTAACGTGATGA+CGG | 0.614624 | 5_1:+49988684 | None:intergenic |
| TCATGCAGCATGTCTAAAGA+CGG | 0.630529 | 5_1:-49987734 | Msa0734990:CDS |
| ACTTCAGATTTGGAGTACAC+AGG | 0.646841 | 5_1:-49988911 | Msa0734990:CDS |
| GCTGCATGATCTCTTGAAAG+GGG | 0.648422 | 5_1:+49987748 | None:intergenic |
| AGAGACTAACGTGATGACGG+TGG | 0.688775 | 5_1:+49988687 | None:intergenic |
| AAACACGCCGGAGTTCCACG+TGG | 0.696120 | 5_1:-49988845 | Msa0734990:CDS |
| AACCAAATATACGTCAGTCG+GGG | 0.696791 | 5_1:-49986246 | Msa0734990:CDS |
| TTTCCTGGGATCATAGATCG+TGG | 0.703860 | 5_1:-49986204 | Msa0734990:CDS |
| GCAAACGCTAAGATTCCACG+TGG | 0.780342 | 5_1:+49988830 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATAATTTTCCAATAAAT+TGG | + | chr5_1:49986867-49986886 | None:intergenic | 10.0% |
| !! | ATTTATAAATAAAGAAATTG+AGG | - | chr5_1:49987045-49987064 | Msa0734990:intron | 10.0% |
| !!! | TTTAAGTAAACAATCATTTT+GGG | + | chr5_1:49987023-49987042 | None:intergenic | 15.0% |
| !!! | TTTTAAGTAAACAATCATTT+TGG | + | chr5_1:49987024-49987043 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGGTAGAA+TGG | - | chr5_1:49987088-49987107 | Msa0734990:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGTAGAAT+GGG | - | chr5_1:49987089-49987108 | Msa0734990:intron | 15.0% |
| !!! | ATAAATACTGATTTAGTTAT+AGG | - | chr5_1:49987419-49987438 | Msa0734990:intron | 15.0% |
| !!! | TTATATTTTTCTAAAAGACA+TGG | - | chr5_1:49987810-49987829 | Msa0734990:CDS | 15.0% |
| !!! | TCTTTTACATTTAAAAATGT+CGG | + | chr5_1:49987864-49987883 | None:intergenic | 15.0% |
| !! | TATATAACATACTTATAGAA+CGG | + | chr5_1:49988151-49988170 | None:intergenic | 15.0% |
| !!! | AATTTAAACAGTGATTTTAT+TGG | + | chr5_1:49988454-49988473 | None:intergenic | 15.0% |
| !!! | TTGTTTGTAATATTTTTGAA+TGG | - | chr5_1:49988846-49988865 | Msa0734990:CDS | 15.0% |
| !!! | TTTAAAATGAACTGTAATCT+AGG | + | chr5_1:49987385-49987404 | None:intergenic | 20.0% |
| !!! | TCAGTATTTATGTTTCTAAT+TGG | + | chr5_1:49987410-49987429 | None:intergenic | 20.0% |
| !!! | TTTGTATACGTGTATTTTTT+TGG | - | chr5_1:49987472-49987491 | Msa0734990:intron | 20.0% |
| !!! | TTGTATACGTGTATTTTTTT+GGG | - | chr5_1:49987473-49987492 | Msa0734990:intron | 20.0% |
| !!! | TCTATTGTAACTGTTATTTT+AGG | - | chr5_1:49987722-49987741 | Msa0734990:CDS | 20.0% |
| !!! | GATGTTATTTTGATTTTTGA+TGG | - | chr5_1:49987752-49987771 | Msa0734990:CDS | 20.0% |
| !! | AATTAAGATAAATGACTCAT+TGG | - | chr5_1:49987959-49987978 | Msa0734990:intron | 20.0% |
| !! | ACATCTAATGTAACAATATA+CGG | + | chr5_1:49988006-49988025 | None:intergenic | 20.0% |
| !! | AAATTAAATGCTTATAGCAT+AGG | + | chr5_1:49988392-49988411 | None:intergenic | 20.0% |
| ! | TCCTTCTTTATTATTCAATC+TGG | - | chr5_1:49986362-49986381 | Msa0734990:intron | 25.0% |
| ! | ACCAGATTGAATAATAAAGA+AGG | + | chr5_1:49986366-49986385 | None:intergenic | 25.0% |
| ! | AGTTTGACTAAAGGTAAATA+AGG | + | chr5_1:49986589-49986608 | None:intergenic | 25.0% |
| ! | TAACTCTTCAAAATTTGAGA+CGG | + | chr5_1:49986741-49986760 | None:intergenic | 25.0% |
| !!! | AAATTTGTTGGGAGTATTAT+AGG | - | chr5_1:49986777-49986796 | Msa0734990:intron | 25.0% |
| !!! | AATACTGATTTAGTTATAGG+TGG | - | chr5_1:49987422-49987441 | Msa0734990:intron | 25.0% |
| !!! | AAGGACATTTAATGTTTTAG+GGG | + | chr5_1:49987571-49987590 | None:intergenic | 25.0% |
| !! | CAAGGACATTTAATGTTTTA+GGG | + | chr5_1:49987572-49987591 | None:intergenic | 25.0% |
| !! | ACAAGGACATTTAATGTTTT+AGG | + | chr5_1:49987573-49987592 | None:intergenic | 25.0% |
| !!! | TGTATTTTAAATAGGCAACA+AGG | - | chr5_1:49987627-49987646 | Msa0734990:intron | 25.0% |
| !!! | ATGCAATTTACTGTTTTGAA+TGG | - | chr5_1:49987782-49987801 | Msa0734990:CDS | 25.0% |
| !!! | CTTGATAGTTGATAAGTAAA+AGG | - | chr5_1:49987888-49987907 | Msa0734990:CDS | 25.0% |
| ! | ATCTGTATTTGTATATACAG+TGG | - | chr5_1:49988101-49988120 | Msa0734990:intron | 25.0% |
| !! | CTATAAGCATTTAATTTAGC+TGG | - | chr5_1:49988395-49988414 | Msa0734990:intron | 25.0% |
| ! | TGACTACAATTATGTATAGA+TGG | - | chr5_1:49988639-49988658 | Msa0734990:intron | 25.0% |
| ! | AATTGACAAATACACACAAT+CGG | + | chr5_1:49988920-49988939 | None:intergenic | 25.0% |
| CAAAAAGCCAAAAATGGAAA+TGG | - | chr5_1:49986078-49986097 | Msa0734990:three_prime_UTR | 30.0% | |
| ! | GAAGTTTCCATTTCCATTTT+TGG | + | chr5_1:49986088-49986107 | None:intergenic | 30.0% |
| GAAAAACAGAGGATTATCAT+TGG | + | chr5_1:49986305-49986324 | None:intergenic | 30.0% | |
| GCTGATAAACAAACTTATAG+CGG | + | chr5_1:49986424-49986443 | None:intergenic | 30.0% | |
| ! | ATTGAACTCAGGTTTTCATT+TGG | + | chr5_1:49986536-49986555 | None:intergenic | 30.0% |
| !! | ATGCTTTGTTTCACAAGAAA+AGG | + | chr5_1:49986627-49986646 | None:intergenic | 30.0% |
| ! | AACTCTTCAAAATTTGAGAC+GGG | + | chr5_1:49986740-49986759 | None:intergenic | 30.0% |
| CTTAAGACTTCAATCTTAAG+TGG | - | chr5_1:49986812-49986831 | Msa0734990:intron | 30.0% | |
| ATCTACACTTAAGACTTAAG+TGG | - | chr5_1:49986835-49986854 | Msa0734990:intron | 30.0% | |
| TCTACACTTAAGACTTAAGT+GGG | - | chr5_1:49986836-49986855 | Msa0734990:intron | 30.0% | |
| AGTGGGATTTACCAATTTAT+TGG | - | chr5_1:49986853-49986872 | Msa0734990:intron | 30.0% | |
| ACCCTTTAAGTATCCAAAAA+TGG | - | chr5_1:49986910-49986929 | Msa0734990:intron | 30.0% | |
| !! | CCCATTTTTGGATACTTAAA+GGG | + | chr5_1:49986914-49986933 | None:intergenic | 30.0% |
| CCCTTTAAGTATCCAAAAAT+GGG | - | chr5_1:49986911-49986930 | Msa0734990:intron | 30.0% | |
| !! | ACCCATTTTTGGATACTTAA+AGG | + | chr5_1:49986915-49986934 | None:intergenic | 30.0% |
| !! | TTTTGGGTCAAATAGTCTAT+TGG | - | chr5_1:49987489-49987508 | Msa0734990:intron | 30.0% |
| TACCATATGAGTTGTACTTA+TGG | - | chr5_1:49987596-49987615 | Msa0734990:intron | 30.0% | |
| ACCATATGAGTTGTACTTAT+GGG | - | chr5_1:49987597-49987616 | Msa0734990:intron | 30.0% | |
| !! | GCCATCTGTGTATTTTAAAT+AGG | - | chr5_1:49987619-49987638 | Msa0734990:intron | 30.0% |
| ! | GCCTATTTAAAATACACAGA+TGG | + | chr5_1:49987623-49987642 | None:intergenic | 30.0% |
| AAAGACATGGATGAAAAATG+AGG | - | chr5_1:49987823-49987842 | Msa0734990:CDS | 30.0% | |
| TTTAAAAATGTCGGCAACAA+TGG | + | chr5_1:49987855-49987874 | None:intergenic | 30.0% | |
| GTTACATTAGATGTAGATTG+TGG | - | chr5_1:49988012-49988031 | Msa0734990:intron | 30.0% | |
| TGTATTTGTATATACAGTGG+AGG | - | chr5_1:49988104-49988123 | Msa0734990:intron | 30.0% | |
| GTATTTGTATATACAGTGGA+GGG | - | chr5_1:49988105-49988124 | Msa0734990:intron | 30.0% | |
| ATTAGCTATGTCAAACTGTT+TGG | + | chr5_1:49988345-49988364 | None:intergenic | 30.0% | |
| ! | AATCAATTTTTGTGATCAGC+TGG | + | chr5_1:49988706-49988725 | None:intergenic | 30.0% |
| TTAACCAAATATACGTCAGT+CGG | - | chr5_1:49988766-49988785 | Msa0734990:CDS | 30.0% | |
| ACGAAGCAAAAAGCCAAAAA+TGG | - | chr5_1:49986072-49986091 | Msa0734990:three_prime_UTR | 35.0% | |
| GGAAATGGAAACTTCAGATT+TGG | - | chr5_1:49986093-49986112 | Msa0734990:three_prime_UTR | 35.0% | |
| ATTGGAATCAAGCAAGAGTT+TGG | + | chr5_1:49986287-49986306 | None:intergenic | 35.0% | |
| AAAGTCATCGAGACTTTGTT+CGG | + | chr5_1:49986463-49986482 | None:intergenic | 35.0% | |
| ATCAAGCAATTAAGCTCAAG+TGG | - | chr5_1:49986497-49986516 | Msa0734990:intron | 35.0% | |
| TCAAGCAATTAAGCTCAAGT+GGG | - | chr5_1:49986498-49986517 | Msa0734990:intron | 35.0% | |
| AGTAAAGAATTGTTCCACCA+TGG | + | chr5_1:49986563-49986582 | None:intergenic | 35.0% | |
| GTAATTCGGAGTTTGACTAA+AGG | + | chr5_1:49986598-49986617 | None:intergenic | 35.0% | |
| ! | AGAAAAGGAGCTTGGTAATT+CGG | + | chr5_1:49986612-49986631 | None:intergenic | 35.0% |
| ! | ACTCTTCAAAATTTGAGACG+GGG | + | chr5_1:49986739-49986758 | None:intergenic | 35.0% |
| TTTGAAGAGTTATACCCCAT+TGG | - | chr5_1:49986749-49986768 | Msa0734990:intron | 35.0% | |
| TTGAAGAGTTATACCCCATT+GGG | - | chr5_1:49986750-49986769 | Msa0734990:intron | 35.0% | |
| ! | AACAAATTTTCTCCCCAATG+GGG | + | chr5_1:49986766-49986785 | None:intergenic | 35.0% |
| ! | CAACAAATTTTCTCCCCAAT+GGG | + | chr5_1:49986767-49986786 | None:intergenic | 35.0% |
| ! | CATTGGGGAGAAAATTTGTT+GGG | - | chr5_1:49986766-49986785 | Msa0734990:intron | 35.0% |
| ! | ACAATAGAGACACCCATTTT+TGG | + | chr5_1:49986926-49986945 | None:intergenic | 35.0% |
| AAAAATGGGTGTCTCTATTG+TGG | - | chr5_1:49986925-49986944 | Msa0734990:intron | 35.0% | |
| !!! | TTTTTTGGTAGAATGGGACT+TGG | - | chr5_1:49987095-49987114 | Msa0734990:intron | 35.0% |
| TGGGACTTGGAAATGTTATA+AGG | - | chr5_1:49987108-49987127 | Msa0734990:intron | 35.0% | |
| GGGACTTGGAAATGTTATAA+GGG | - | chr5_1:49987109-49987128 | Msa0734990:intron | 35.0% | |
| TGGAAATGTTATAAGGGAAG+TGG | - | chr5_1:49987115-49987134 | Msa0734990:intron | 35.0% | |
| AGCTTGTGTTAGAAGTAAAG+AGG | - | chr5_1:49987152-49987171 | Msa0734990:intron | 35.0% | |
| GCTTGCGACTTAAAAGTAAT+TGG | - | chr5_1:49987241-49987260 | Msa0734990:intron | 35.0% | |
| ! | CTGTAATCTAGGATCATCAA+CGG | + | chr5_1:49987374-49987393 | None:intergenic | 35.0% |
| !!! | TGGCACATGTTTTAGTTGTA+TGG | - | chr5_1:49987442-49987461 | Msa0734990:intron | 35.0% |
| !! | ACAGTAAGTGTTGGTAAGTA+GGG | - | chr5_1:49987524-49987543 | Msa0734990:intron | 35.0% |
| CAACTCATATGGTAACTACA+AGG | + | chr5_1:49987590-49987609 | None:intergenic | 35.0% | |
| GAGGGATATTGTATTTCTCT+TGG | - | chr5_1:49988123-49988142 | Msa0734990:intron | 35.0% | |
| TTATCCAAACATGATCGTAG+AGG | - | chr5_1:49988418-49988437 | Msa0734990:intron | 35.0% | |
| ! | TTTTCCTCTACGATCATGTT+TGG | + | chr5_1:49988425-49988444 | None:intergenic | 35.0% |
| TGAACTCAACTCATCTAAAC+TGG | + | chr5_1:49988547-49988566 | None:intergenic | 35.0% | |
| AGTTAGAACATGAAGAAGAC+AGG | - | chr5_1:49988577-49988596 | Msa0734990:intron | 35.0% | |
| TTTGGTTAAGCTTGTACATC+AGG | + | chr5_1:49988755-49988774 | None:intergenic | 35.0% | |
| TAACCAAATATACGTCAGTC+GGG | - | chr5_1:49988767-49988786 | Msa0734990:CDS | 35.0% | |
| ! | ACTTCAGATTTGGAGTACAC+AGG | - | chr5_1:49986103-49986122 | Msa0734990:three_prime_UTR | 40.0% |
| ! | GATTGGGATGTGTTGATCTT+CGG | + | chr5_1:49986131-49986150 | None:intergenic | 40.0% |
| ! | CACATCCCAATCGATCTTTT+CGG | - | chr5_1:49986139-49986158 | Msa0734990:exon | 40.0% |
| TGGAACCGAAAAGATCGATT+GGG | + | chr5_1:49986147-49986166 | None:intergenic | 40.0% | |
| TTGGAACCGAAAAGATCGAT+TGG | + | chr5_1:49986148-49986167 | None:intergenic | 40.0% | |
| ATCGGGTAACATAGTCTTCA+AGG | - | chr5_1:49986213-49986232 | Msa0734990:CDS | 40.0% | |
| TTTGGAGATGAAGAGGAGTT+GGG | + | chr5_1:49986259-49986278 | None:intergenic | 40.0% | |
| AGCAAGAGTTTGGTATCCTT+TGG | + | chr5_1:49986277-49986296 | None:intergenic | 40.0% | |
| AAGAGAGACTAACGTGATGA+CGG | + | chr5_1:49986333-49986352 | None:intergenic | 40.0% | |
| ! | GAACTCAGGTTTTCATTTGG+TGG | + | chr5_1:49986533-49986552 | None:intergenic | 40.0% |
| ACCTGAGTTCAATGATTCCA+TGG | - | chr5_1:49986543-49986562 | Msa0734990:intron | 40.0% | |
| ACCATGGAATCATTGAACTC+AGG | + | chr5_1:49986547-49986566 | None:intergenic | 40.0% | |
| TGAGTTCAATGATTCCATGG+TGG | - | chr5_1:49986546-49986565 | Msa0734990:intron | 40.0% | |
| GTTTCACAAGAAAAGGAGCT+TGG | + | chr5_1:49986620-49986639 | None:intergenic | 40.0% | |
| ! | TTCAAAATTTGAGACGGGGA+TGG | + | chr5_1:49986735-49986754 | None:intergenic | 40.0% |
| TGAAGAGTTATACCCCATTG+GGG | - | chr5_1:49986751-49986770 | Msa0734990:intron | 40.0% | |
| ! | CCAACAAATTTTCTCCCCAA+TGG | + | chr5_1:49986768-49986787 | None:intergenic | 40.0% |
| CCATTGGGGAGAAAATTTGT+TGG | - | chr5_1:49986765-49986784 | Msa0734990:intron | 40.0% | |
| !! | TTGGGAGTATTATAGGACCA+AGG | - | chr5_1:49986784-49986803 | Msa0734990:intron | 40.0% |
| TGAAGTCTTAAGTGAGACCT+TGG | + | chr5_1:49986804-49986823 | None:intergenic | 40.0% | |
| TCTCTATTGTGGATGCTCTT+AGG | - | chr5_1:49986936-49986955 | Msa0734990:intron | 40.0% | |
| TATTGTGGATGCTCTTAGGA+GGG | - | chr5_1:49986940-49986959 | Msa0734990:intron | 40.0% | |
| GATTACCAGAGTTGAGTTAG+AGG | - | chr5_1:49987186-49987205 | Msa0734990:intron | 40.0% | |
| AAACACCTCTAACTCAACTC+TGG | + | chr5_1:49987194-49987213 | None:intergenic | 40.0% | |
| !!! | GAGTTAGAGGTGTTTTTTGC+TGG | - | chr5_1:49987199-49987218 | Msa0734990:intron | 40.0% |
| TGCTGCATGATCTCTTGAAA+GGG | + | chr5_1:49987270-49987289 | None:intergenic | 40.0% | |
| ATGCTGCATGATCTCTTGAA+AGG | + | chr5_1:49987271-49987290 | None:intergenic | 40.0% | |
| TCATGCAGCATGTCTAAAGA+CGG | - | chr5_1:49987280-49987299 | Msa0734990:intron | 40.0% | |
| CTTACCAACACTTACTGTGT+GGG | + | chr5_1:49987522-49987541 | None:intergenic | 40.0% | |
| ACTTACCAACACTTACTGTG+TGG | + | chr5_1:49987523-49987542 | None:intergenic | 40.0% | |
| !! | CACAGTAAGTGTTGGTAAGT+AGG | - | chr5_1:49987523-49987542 | Msa0734990:intron | 40.0% |
| ! | TGTTGGTAAGTAGGGAATTG+CGG | - | chr5_1:49987532-49987551 | Msa0734990:intron | 40.0% |
| GCCCATAAGTACAACTCATA+TGG | + | chr5_1:49987601-49987620 | None:intergenic | 40.0% | |
| ACTGGCAGCATCAATTTATG+AGG | + | chr5_1:49988529-49988548 | None:intergenic | 40.0% | |
| AACCAAATATACGTCAGTCG+GGG | - | chr5_1:49988768-49988787 | Msa0734990:CDS | 40.0% | |
| !! | CATAGATCGTGGTCTTATTG+TGG | - | chr5_1:49988821-49988840 | Msa0734990:CDS | 40.0% |
| TAGAGCTGCAATGCAAGAAA+AGG | - | chr5_1:49988939-49988958 | Msa0734990:exon | 40.0% | |
| TTCGGTTCCAAAAAACACGC+CGG | - | chr5_1:49986157-49986176 | Msa0734990:exon | 45.0% | |
| TAAGATTCCACGTGGAACTC+CGG | + | chr5_1:49986179-49986198 | None:intergenic | 45.0% | |
| ! | CTTAGCGTTTGCTGATGCAT+CGG | - | chr5_1:49986195-49986214 | Msa0734990:CDS | 45.0% |
| ! | TTAGCGTTTGCTGATGCATC+GGG | - | chr5_1:49986196-49986215 | Msa0734990:CDS | 45.0% |
| GATGAAGAGGAGTTGGGATT+GGG | + | chr5_1:49986253-49986272 | None:intergenic | 45.0% | |
| AGATGAAGAGGAGTTGGGAT+TGG | + | chr5_1:49986254-49986273 | None:intergenic | 45.0% | |
| ! | CTTTGGAGATGAAGAGGAGT+TGG | + | chr5_1:49986260-49986279 | None:intergenic | 45.0% |
| CAACTCCTCTTCATCTCCAA+AGG | - | chr5_1:49986258-49986277 | Msa0734990:CDS | 45.0% | |
| ! | GGTATCCTTTGGAGATGAAG+AGG | + | chr5_1:49986266-49986285 | None:intergenic | 45.0% |
| TGACGGTGGATGAAAAACAG+AGG | + | chr5_1:49986316-49986335 | None:intergenic | 45.0% | |
| CTATTGTGGATGCTCTTAGG+AGG | - | chr5_1:49986939-49986958 | Msa0734990:intron | 45.0% | |
| ! | GGGAAGTGGTGATGAGAATA+AGG | - | chr5_1:49987129-49987148 | Msa0734990:intron | 45.0% |
| GCTGCATGATCTCTTGAAAG+GGG | + | chr5_1:49987269-49987288 | None:intergenic | 45.0% | |
| CATGTCTAAAGACGGCGATT+TGG | - | chr5_1:49987288-49987307 | Msa0734990:intron | 45.0% | |
| ACACTTACTGTGTGGGATAC+TGG | + | chr5_1:49987515-49987534 | None:intergenic | 45.0% | |
| GTATCCCACACAGTAAGTGT+TGG | - | chr5_1:49987515-49987534 | Msa0734990:intron | 45.0% | |
| ! | GTTGGTAAGTAGGGAATTGC+GGG | - | chr5_1:49987533-49987552 | Msa0734990:intron | 45.0% |
| TACCCCGACTGACGTATATT+TGG | + | chr5_1:49988773-49988792 | None:intergenic | 45.0% | |
| TTTCGCCTGACAATCTTTCC+TGG | - | chr5_1:49988795-49988814 | Msa0734990:CDS | 45.0% | |
| TTCGCCTGACAATCTTTCCT+GGG | - | chr5_1:49988796-49988815 | Msa0734990:CDS | 45.0% | |
| TGATCCCAGGAAAGATTGTC+AGG | + | chr5_1:49988803-49988822 | None:intergenic | 45.0% | |
| TTTCCTGGGATCATAGATCG+TGG | - | chr5_1:49988810-49988829 | Msa0734990:CDS | 45.0% | |
| !! | AAAAAAATAAAAATAATAAC+AGG | - | chr5_1:49986653-49986672 | Msa0734990:intron | 5.0% |
| !!! | AATGTTTTTTTTTTTTTTTT+TGG | - | chr5_1:49987080-49987099 | Msa0734990:intron | 5.0% |
| !!! | TGGAACTCCGGCGTGTTTTT+TGG | + | chr5_1:49986167-49986186 | None:intergenic | 50.0% |
| GCAAACGCTAAGATTCCACG+TGG | + | chr5_1:49986187-49986206 | None:intergenic | 50.0% | |
| AGTTGGGATTGGGTGGTTGA+CGG | + | chr5_1:49986243-49986262 | None:intergenic | 50.0% | |
| !! | AGAGACTAACGTGATGACGG+TGG | + | chr5_1:49986330-49986349 | None:intergenic | 50.0% |
| ! | GTCTAAAGACGGCGATTTGG+TGG | - | chr5_1:49987291-49987310 | Msa0734990:intron | 50.0% |
| AGACCACGATCTATGATCCC+AGG | + | chr5_1:49988816-49988835 | None:intergenic | 50.0% | |
| GAAGAGGAGTTGGGATTGGG+TGG | + | chr5_1:49986250-49986269 | None:intergenic | 55.0% | |
| GAGACGGGGATGGTCTAACA+TGG | + | chr5_1:49986725-49986744 | None:intergenic | 55.0% | |
| AAACACGCCGGAGTTCCACG+TGG | - | chr5_1:49986169-49986188 | Msa0734990:CDS | 60.0% | |
| !! | AGACGGCGATTTGGTGGCAC+AGG | - | chr5_1:49987297-49987316 | Msa0734990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 49986060 | 49988976 | 49986060 | ID=Msa0734990;Name=Msa0734990 |
| chr5_1 | mRNA | 49986060 | 49988976 | 49986060 | ID=Msa0734990-mRNA-1;Parent=Msa0734990;Name=Msa0734990-mRNA-1;_AED=0.23;_eAED=0.23;_QI=31|1|1|1|1|1|3|98|197 |
| chr5_1 | exon | 49986060 | 49986289 | 49986060 | ID=Msa0734990-mRNA-1:exon:14130;Parent=Msa0734990-mRNA-1 |
| chr5_1 | exon | 49987718 | 49987930 | 49987718 | ID=Msa0734990-mRNA-1:exon:14129;Parent=Msa0734990-mRNA-1 |
| chr5_1 | exon | 49988697 | 49988976 | 49988697 | ID=Msa0734990-mRNA-1:exon:14128;Parent=Msa0734990-mRNA-1 |
| chr5_1 | five_prime_UTR | 49988946 | 49988976 | 49988946 | ID=Msa0734990-mRNA-1:five_prime_utr;Parent=Msa0734990-mRNA-1 |
| chr5_1 | CDS | 49988697 | 49988945 | 49988697 | ID=Msa0734990-mRNA-1:cds;Parent=Msa0734990-mRNA-1 |
| chr5_1 | CDS | 49987718 | 49987930 | 49987718 | ID=Msa0734990-mRNA-1:cds;Parent=Msa0734990-mRNA-1 |
| chr5_1 | CDS | 49986158 | 49986289 | 49986158 | ID=Msa0734990-mRNA-1:cds;Parent=Msa0734990-mRNA-1 |
| chr5_1 | three_prime_UTR | 49986060 | 49986157 | 49986060 | ID=Msa0734990-mRNA-1:three_prime_utr;Parent=Msa0734990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
