AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610130 MtrunA17_Chr8g0382371 80.702 114 20 2 173 285 23 135 2.97e-59 185
Msa0610130 MtrunA17_Chr8g0392041 35.786 299 121 9 1 284 173 415 2.49e-42 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATGAGAGATAATGATTT+TGG 0.181886 4_2:-57829372 None:intergenic
AAATTTGAAGGTACATTCTT+TGG 0.214583 4_2:-57826149 None:intergenic
AAAGAAATGTGTGATCTTCT+TGG 0.222446 4_2:-57829249 None:intergenic
AGGAGTTTCAACCTTGAATT+TGG 0.229846 4_2:-57826118 None:intergenic
AAGAAGATCACACATTTCTT+TGG 0.253491 4_2:+57829251 Msa0610130:CDS
AACTTTCAGTTTAAAATCTC+TGG 0.322084 4_2:+57828998 Msa0610130:intron
ATGGATTGAAGATGGAGAAT+TGG 0.326377 4_2:+57827095 Msa0610130:CDS
GTTTGGGAAGAAAGTGTCTT+TGG 0.330413 4_2:-57829177 None:intergenic
AAGTAGAAATTGAAGAAATT+AGG 0.332969 4_2:+57827124 Msa0610130:CDS
AACAGCACGATGCATACTTT+TGG 0.338909 4_2:+57826188 Msa0610130:CDS
TGGATTGAAGATGGAGAATT+GGG 0.341734 4_2:+57827096 Msa0610130:CDS
CAGACTATCATTTGAATCTC+AGG 0.350260 4_2:+57829153 Msa0610130:CDS
ATATTGAAGATTAGGGTTCA+TGG 0.372559 4_2:+57827076 Msa0610130:intron
CAGTTTCAGCCTAGAATTAG+AGG 0.378850 4_2:+57827179 Msa0610130:CDS
GGGAACCCACCTCTAATTCT+AGG 0.385313 4_2:-57827188 None:intergenic
ATTTCTTTGGAAATATCAAT+TGG 0.392103 4_2:+57829264 Msa0610130:CDS
TCCACTGGAAGGGTCGAGAT+AGG 0.402994 4_2:+57829218 Msa0610130:CDS
CAATTGGACTTTGAAAGAAT+TGG 0.407427 4_2:+57829280 Msa0610130:CDS
TTGATTTAAGTGACTGCAAA+AGG 0.408584 4_2:+57826016 Msa0610130:CDS
CAAGACTATCGTCGTCGCTC+AGG 0.427091 4_2:+57829346 Msa0610130:CDS
TTTGAATCTGAGGGACTTGA+AGG 0.431891 4_2:+57829091 Msa0610130:CDS
AGAGAGTGGTGCCAAATTCA+AGG 0.439193 4_2:+57826107 Msa0610130:intron
GAATGTCCTTGGCAACGATA+AGG 0.449849 4_2:-57826301 None:intergenic
TAGGGTTCATGGATTGAAGA+TGG 0.455797 4_2:+57827087 Msa0610130:intron
AATGTCCTTGGCAACGATAA+GGG 0.461275 4_2:-57826300 None:intergenic
CAGGGAGTGCAGTTCCTGGT+TGG 0.465805 4_2:+57826275 Msa0610130:CDS
TTACAAATGCTCTGAATATG+TGG 0.467365 4_2:+57829024 Msa0610130:CDS
TCATGATTACTGAATGTCCT+TGG 0.470738 4_2:-57826312 None:intergenic
AGCGACGACGATAGTCTTGT+TGG 0.472450 4_2:-57829342 None:intergenic
ATTGGTGAAATAAAATTTGA+AGG 0.481370 4_2:-57826161 None:intergenic
TGCATCGTGCTGTTGACTAT+TGG 0.494787 4_2:-57826179 None:intergenic
AGACTATCATTTGAATCTCA+GGG 0.507098 4_2:+57829154 Msa0610130:CDS
TACATTCTTTGGAATCAGAC+AGG 0.516801 4_2:-57826138 None:intergenic
ATCTGAGGGACTTGAAGGTA+TGG 0.520206 4_2:+57829096 Msa0610130:CDS
AATTGAAGAAATTAGGAGCA+AGG 0.523754 4_2:+57827131 Msa0610130:CDS
TGGTTCCCTTATCGTTGCCA+AGG 0.538732 4_2:+57826295 Msa0610130:CDS
CAGACTAGCATTTGAATCTG+AGG 0.552959 4_2:+57829081 Msa0610130:CDS
CAACGATAAGGGAACCAACC+AGG 0.573019 4_2:-57826289 None:intergenic
AGACTAGCATTTGAATCTGA+GGG 0.584560 4_2:+57829082 Msa0610130:CDS
ACCTATCTCGACCCTTCCAG+TGG 0.584803 4_2:-57829219 None:intergenic
ATGGATTACAAAAGAACAAG+AGG 0.590187 4_2:+57829115 Msa0610130:CDS
TCAACGGTGGTGAAAGAGTG+TGG 0.606354 4_2:+57829400 Msa0610130:CDS
GTGGTATTGGAGACGAAGCA+TGG 0.613430 4_2:+57826212 Msa0610130:CDS
GCTTCCACAAAATATAAACC+AGG 0.635585 4_2:+57826056 Msa0610130:CDS
AGATTCAAATGATAGTCTGA+AGG 0.642154 4_2:-57829149 None:intergenic
GATTACAAAAGAACAAGAGG+TGG 0.662155 4_2:+57829118 Msa0610130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAATATATCATTTCTTT+TGG - chr4_2:57827724-57827743 None:intergenic 10.0%
!! TCTAATTTACAAAACATATA+AGG - chr4_2:57826457-57826476 None:intergenic 15.0%
!! ATGAAAATATAATTCTAACT+AGG - chr4_2:57826598-57826617 None:intergenic 15.0%
!!! ATGATTGATATTTTAATTTG+AGG - chr4_2:57826985-57827004 None:intergenic 15.0%
!! AATAAGAATATTGAAGATTA+GGG + chr4_2:57827069-57827088 Msa0610130:intron 15.0%
!!! ATATCATACATTTTTAATCA+AGG - chr4_2:57827340-57827359 None:intergenic 15.0%
!!! ATATTCGTATTTTACTAATA+GGG - chr4_2:57827498-57827517 None:intergenic 15.0%
!! ATTGGTGAAATAAAATTTGA+AGG - chr4_2:57826164-57826183 None:intergenic 20.0%
!! TGAATAAAGATTCTTTGTAT+AGG + chr4_2:57826332-57826351 Msa0610130:intron 20.0%
!!! TTGTAAATTAGAGTATGTTT+TGG + chr4_2:57826465-57826484 Msa0610130:intron 20.0%
!! ACTAAAAATTAAGTGCTAAT+TGG - chr4_2:57826725-57826744 None:intergenic 20.0%
!! TAAGGAATAAAATTAGACTT+TGG + chr4_2:57826777-57826796 Msa0610130:intron 20.0%
!! AAGGAATAAAATTAGACTTT+GGG + chr4_2:57826778-57826797 Msa0610130:intron 20.0%
!! TGATTAACATTGTAACTTAA+GGG + chr4_2:57826808-57826827 Msa0610130:intron 20.0%
!!! AATCATTTTGACTAAAATGT+TGG - chr4_2:57826881-57826900 None:intergenic 20.0%
!! GAATAAGAATATTGAAGATT+AGG + chr4_2:57827068-57827087 Msa0610130:intron 20.0%
!! AAGTAGAAATTGAAGAAATT+AGG + chr4_2:57827124-57827143 Msa0610130:CDS 20.0%
!! TGCATCATATTATGATAATT+AGG + chr4_2:57827226-57827245 Msa0610130:intron 20.0%
!! ACATGAATATTCAATATCTT+GGG - chr4_2:57827424-57827443 None:intergenic 20.0%
!! TACATGAATATTCAATATCT+TGG - chr4_2:57827425-57827444 None:intergenic 20.0%
!! AAGATATTGAATATTCATGT+AGG + chr4_2:57827424-57827443 Msa0610130:intron 20.0%
!!! GATATTCGTATTTTACTAAT+AGG - chr4_2:57827499-57827518 None:intergenic 20.0%
!!! TAATTTTGTCTACTTTCTAA+TGG - chr4_2:57827558-57827577 None:intergenic 20.0%
!!! TTTATCCAAACTGATTTAAA+TGG + chr4_2:57827687-57827706 Msa0610130:intron 20.0%
!! AATATCCATTTAAATCAGTT+TGG - chr4_2:57827695-57827714 None:intergenic 20.0%
!! TAAATAATATAACTTGACAC+TGG + chr4_2:57828086-57828105 Msa0610130:intron 20.0%
!!! AAGCATAATAATAATTTGTG+AGG + chr4_2:57828319-57828338 Msa0610130:intron 20.0%
!!! AGCATAATAATAATTTGTGA+GGG + chr4_2:57828320-57828339 Msa0610130:intron 20.0%
!! TATATTGTCAAACTTTACTT+CGG - chr4_2:57828451-57828470 None:intergenic 20.0%
!! ATAACTACTAATTATATCTC+TGG - chr4_2:57828701-57828720 None:intergenic 20.0%
!! GTATAATTTATAAGCTATCT+TGG + chr4_2:57828810-57828829 Msa0610130:intron 20.0%
!!! ATTTCTTTGGAAATATCAAT+TGG + chr4_2:57829264-57829283 Msa0610130:CDS 20.0%
!! TTTATATTTTGTGGAAGCTT+TGG - chr4_2:57826054-57826073 None:intergenic 25.0%
! ACAAAATATAAACCAGGTTT+CGG + chr4_2:57826062-57826081 Msa0610130:intron 25.0%
!! AAATTTGAAGGTACATTCTT+TGG - chr4_2:57826152-57826171 None:intergenic 25.0%
! ACATATAAGGAAATATTGCA+AGG - chr4_2:57826444-57826463 None:intergenic 25.0%
!! TAATTGGTATTCTTGATTTG+GGG - chr4_2:57826709-57826728 None:intergenic 25.0%
! CTAATTGGTATTCTTGATTT+GGG - chr4_2:57826710-57826729 None:intergenic 25.0%
! GTGATTAACATTGTAACTTA+AGG + chr4_2:57826807-57826826 Msa0610130:intron 25.0%
! TTATCATAATATGATGCATG+AGG - chr4_2:57827224-57827243 None:intergenic 25.0%
! AATTAGGATGTGTTAGTATA+TGG + chr4_2:57827242-57827261 Msa0610130:intron 25.0%
! CATGAATATTCAATATCTTG+GGG - chr4_2:57827423-57827442 None:intergenic 25.0%
! TTTGGATAAAGAATACATAC+AGG - chr4_2:57827677-57827696 None:intergenic 25.0%
!! TTACTAACAAAACTGAGTTT+TGG + chr4_2:57827837-57827856 Msa0610130:intron 25.0%
!! TACTAACAAAACTGAGTTTT+GGG + chr4_2:57827838-57827857 Msa0610130:intron 25.0%
! TTATAGAACATACATATGCA+AGG - chr4_2:57827942-57827961 None:intergenic 25.0%
!! TTAAGATGAAGTATTAGCAT+TGG + chr4_2:57827980-57827999 Msa0610130:intron 25.0%
! TATTGTGCTAAGTTATTATG+AGG + chr4_2:57828476-57828495 Msa0610130:intron 25.0%
! AATTAAGATATCCAGTAGAA+AGG + chr4_2:57828521-57828540 Msa0610130:intron 25.0%
!!! TTAGTAGTTATTTTCCAGAT+TGG + chr4_2:57828710-57828729 Msa0610130:intron 25.0%
!! TTTCCCTTTTTGTAAAAATG+TGG + chr4_2:57828895-57828914 Msa0610130:intron 25.0%
!! TGTTGTGAAAGACTTTTTAT+TGG + chr4_2:57828974-57828993 Msa0610130:intron 25.0%
!! AACTTTCAGTTTAAAATCTC+TGG + chr4_2:57828998-57829017 Msa0610130:intron 25.0%
!!! TAGTTTTTTAGCTCATGTTT+GGG - chr4_2:57829196-57829215 None:intergenic 25.0%
!!! ATAGTTTTTTAGCTCATGTT+TGG - chr4_2:57829197-57829216 None:intergenic 25.0%
!! AACATGAGAGATAATGATTT+TGG - chr4_2:57829375-57829394 None:intergenic 25.0%
TTGATTTAAGTGACTGCAAA+AGG + chr4_2:57826016-57826035 Msa0610130:CDS 30.0%
! GAAACCTGGTTTATATTTTG+TGG - chr4_2:57826063-57826082 None:intergenic 30.0%
TAAAAACCGTCTATGCTATA+AGG + chr4_2:57826360-57826379 Msa0610130:intron 30.0%
TTGAAACCTTATAGCATAGA+CGG - chr4_2:57826369-57826388 None:intergenic 30.0%
GCTAATTGGTATTCTTGATT+TGG - chr4_2:57826711-57826730 None:intergenic 30.0%
AGTGTATTAAGGGTTATTAG+TGG + chr4_2:57826752-57826771 Msa0610130:intron 30.0%
TAAGGGTTATTAGTGGTTTA+AGG + chr4_2:57826759-57826778 Msa0610130:intron 30.0%
TGGACTTTCTCATTTACATA+GGG - chr4_2:57826861-57826880 None:intergenic 30.0%
TTGGACTTTCTCATTTACAT+AGG - chr4_2:57826862-57826881 None:intergenic 30.0%
TATGTAAACCATAGAAAGAG+AGG + chr4_2:57827024-57827043 Msa0610130:intron 30.0%
ATGTAAACCATAGAAAGAGA+GGG + chr4_2:57827025-57827044 Msa0610130:intron 30.0%
ATATTGAAGATTAGGGTTCA+TGG + chr4_2:57827076-57827095 Msa0610130:intron 30.0%
AATTGAAGAAATTAGGAGCA+AGG + chr4_2:57827131-57827150 Msa0610130:CDS 30.0%
ATAACTTAGAACTACATGCA+TGG - chr4_2:57827285-57827304 None:intergenic 30.0%
GAATTGTTTCATATGTTTGC+TGG + chr4_2:57827366-57827385 Msa0610130:intron 30.0%
TAATAGGGTATATCAGTTAC+GGG - chr4_2:57827483-57827502 None:intergenic 30.0%
CTAATAGGGTATATCAGTTA+CGG - chr4_2:57827484-57827503 None:intergenic 30.0%
ATTTCTTGTGTCTATCTTGT+AGG - chr4_2:57827581-57827600 None:intergenic 30.0%
GAATACTCGTTTACTCAATT+TGG + chr4_2:57827769-57827788 Msa0610130:intron 30.0%
! GTTCGATTGATAACATACTA+AGG + chr4_2:57828007-57828026 Msa0610130:intron 30.0%
CTGGATATCTTAATTTATCC+AGG - chr4_2:57828516-57828535 None:intergenic 30.0%
CTGTTAATAACTAAGCATTC+AGG - chr4_2:57828552-57828571 None:intergenic 30.0%
! TATTAACAGTTTAGAACTGC+AGG + chr4_2:57828563-57828582 Msa0610130:intron 30.0%
! ATTAACAGTTTAGAACTGCA+GGG + chr4_2:57828564-57828583 Msa0610130:intron 30.0%
TAAAACATAGTATGCCAATC+TGG - chr4_2:57828727-57828746 None:intergenic 30.0%
TGAAAAAGATTCAACAGAGT+GGG - chr4_2:57828789-57828808 None:intergenic 30.0%
! CAGCCACATTTTTACAAAAA+GGG - chr4_2:57828901-57828920 None:intergenic 30.0%
! TCAGCCACATTTTTACAAAA+AGG - chr4_2:57828902-57828921 None:intergenic 30.0%
! TTACAAATGCTCTGAATATG+TGG + chr4_2:57829024-57829043 Msa0610130:CDS 30.0%
! ATGGATTACAAAAGAACAAG+AGG + chr4_2:57829115-57829134 Msa0610130:CDS 30.0%
AGATTCAAATGATAGTCTGA+AGG - chr4_2:57829152-57829171 None:intergenic 30.0%
AGACTATCATTTGAATCTCA+GGG + chr4_2:57829154-57829173 Msa0610130:CDS 30.0%
AGCTAAAAAACTATTTCCAC+TGG + chr4_2:57829203-57829222 Msa0610130:CDS 30.0%
AAAAAACTATTTCCACTGGA+AGG + chr4_2:57829207-57829226 Msa0610130:CDS 30.0%
AAAAACTATTTCCACTGGAA+GGG + chr4_2:57829208-57829227 Msa0610130:CDS 30.0%
AAAGAAATGTGTGATCTTCT+TGG - chr4_2:57829252-57829271 None:intergenic 30.0%
AAGAAGATCACACATTTCTT+TGG + chr4_2:57829251-57829270 Msa0610130:CDS 30.0%
! CAATTGGACTTTGAAAGAAT+TGG + chr4_2:57829280-57829299 Msa0610130:CDS 30.0%
! GATCTCAAAAATGAAGTGTT+GGG - chr4_2:57829323-57829342 None:intergenic 30.0%
! TCTCTCATGTTTTCAATCAA+CGG + chr4_2:57829384-57829403 Msa0610130:CDS 30.0%
GCTTCCACAAAATATAAACC+AGG + chr4_2:57826056-57826075 Msa0610130:CDS 35.0%
AGGAGTTTCAACCTTGAATT+TGG - chr4_2:57826121-57826140 None:intergenic 35.0%
!! TACATTCTTTGGAATCAGAC+AGG - chr4_2:57826141-57826160 None:intergenic 35.0%
!! TCAGTGTTCTTCTGTTTTTC+AGG + chr4_2:57826256-57826275 Msa0610130:CDS 35.0%
!! CAGTGTTCTTCTGTTTTTCA+GGG + chr4_2:57826257-57826276 Msa0610130:CDS 35.0%
TCATGATTACTGAATGTCCT+TGG - chr4_2:57826315-57826334 None:intergenic 35.0%
AAAGATTCTTTGTATAGGCG+TGG + chr4_2:57826337-57826356 Msa0610130:intron 35.0%
TTTCATTAGAATAGTGCAGC+AGG + chr4_2:57826612-57826631 Msa0610130:intron 35.0%
TTAGTTAGGCCACAGAATTT+CGG + chr4_2:57826647-57826666 Msa0610130:intron 35.0%
! GGGGACGAAATTCATTTTAA+GGG + chr4_2:57826668-57826687 Msa0610130:intron 35.0%
! GGGACGAAATTCATTTTAAG+GGG + chr4_2:57826669-57826688 Msa0610130:intron 35.0%
!! GGACGAAATTCATTTTAAGG+GGG + chr4_2:57826670-57826689 Msa0610130:intron 35.0%
!! GACGAAATTCATTTTAAGGG+GGG + chr4_2:57826671-57826690 Msa0610130:intron 35.0%
TAGTGTCTCTGAGTGTATTA+AGG + chr4_2:57826741-57826760 Msa0610130:intron 35.0%
AGTGTCTCTGAGTGTATTAA+GGG + chr4_2:57826742-57826761 Msa0610130:intron 35.0%
ACTTTCTCATTTACATAGGG+AGG - chr4_2:57826858-57826877 None:intergenic 35.0%
AAAATGTGTCTCTTGTCTTG+TGG - chr4_2:57826933-57826952 None:intergenic 35.0%
!! GTTGCATGTAGTATTGGTTA+AGG - chr4_2:57826963-57826982 None:intergenic 35.0%
! TTTGAGGTTGCATGTAGTAT+TGG - chr4_2:57826969-57826988 None:intergenic 35.0%
AAATTCACCCTCTCTTTCTA+TGG - chr4_2:57827035-57827054 None:intergenic 35.0%
! ATGGATTGAAGATGGAGAAT+TGG + chr4_2:57827095-57827114 Msa0610130:CDS 35.0%
TGGATTGAAGATGGAGAATT+GGG + chr4_2:57827096-57827115 Msa0610130:CDS 35.0%
ATATGATGCATGAGGAATGA+GGG - chr4_2:57827216-57827235 None:intergenic 35.0%
AATATGATGCATGAGGAATG+AGG - chr4_2:57827217-57827236 None:intergenic 35.0%
! TTCATATGTTTGCTGGTTGT+TGG + chr4_2:57827373-57827392 Msa0610130:intron 35.0%
! TCATATGTTTGCTGGTTGTT+GGG + chr4_2:57827374-57827393 Msa0610130:intron 35.0%
GATCATTTGTGAGTGAAACT+TGG + chr4_2:57827531-57827550 Msa0610130:intron 35.0%
TTGAATTCTATCGAGTAGAG+TGG + chr4_2:57827602-57827621 Msa0610130:intron 35.0%
TGAATTCTATCGAGTAGAGT+GGG + chr4_2:57827603-57827622 Msa0610130:intron 35.0%
! CTTCTATCTAACTTGCATCT+AGG - chr4_2:57827635-57827654 None:intergenic 35.0%
AGAAGTTTATGTTCAGCTTC+TGG + chr4_2:57827650-57827669 Msa0610130:intron 35.0%
TTGACATTCTAAGCTTTCCA+TGG + chr4_2:57827747-57827766 Msa0610130:intron 35.0%
TTGAGTAAACGAGTATTCCA+TGG - chr4_2:57827767-57827786 None:intergenic 35.0%
! ATAATTTGTGAGGGTTACAC+CGG + chr4_2:57828329-57828348 Msa0610130:intron 35.0%
TTGAGAATACTCACACTCAA+GGG + chr4_2:57828422-57828441 Msa0610130:intron 35.0%
!! AAGTTATTATGAGGCATTGC+AGG + chr4_2:57828485-57828504 Msa0610130:intron 35.0%
!! AGTTATTATGAGGCATTGCA+GGG + chr4_2:57828486-57828505 Msa0610130:intron 35.0%
AATCAAGATGTCCAGTAGAA+AGG + chr4_2:57828599-57828618 Msa0610130:intron 35.0%
AAAGGCAAATCCTGAATACT+TGG + chr4_2:57828617-57828636 Msa0610130:intron 35.0%
CCTTTCTTTACCAAGTATTC+AGG - chr4_2:57828630-57828649 None:intergenic 35.0%
CCTGAATACTTGGTAAAGAA+AGG + chr4_2:57828627-57828646 Msa0610130:intron 35.0%
! ACTATGTTTTATCCCGAGTT+TGG + chr4_2:57828736-57828755 Msa0610130:intron 35.0%
! CTATGTTTTATCCCGAGTTT+GGG + chr4_2:57828737-57828756 Msa0610130:intron 35.0%
CTGAAAAAGATTCAACAGAG+TGG - chr4_2:57828790-57828809 None:intergenic 35.0%
! CACTCTGTTGAATCTTTTTC+AGG + chr4_2:57828788-57828807 Msa0610130:intron 35.0%
TAAGCTATCTTGGAGTCAAT+TGG + chr4_2:57828820-57828839 Msa0610130:intron 35.0%
TCTTGGAGTCAATTGGATAT+CGG + chr4_2:57828827-57828846 Msa0610130:intron 35.0%
AGACTAGCATTTGAATCTGA+GGG + chr4_2:57829082-57829101 Msa0610130:CDS 35.0%
GATTACAAAAGAACAAGAGG+TGG + chr4_2:57829118-57829137 Msa0610130:CDS 35.0%
CAGACTATCATTTGAATCTC+AGG + chr4_2:57829153-57829172 Msa0610130:CDS 35.0%
GGATCTCAAAAATGAAGTGT+TGG - chr4_2:57829324-57829343 None:intergenic 35.0%
TGCTCATCCATTTAAGAGAG+TGG + chr4_2:57826093-57826112 Msa0610130:intron 40.0%
TTTGGCACCACTCTCTTAAA+TGG - chr4_2:57826103-57826122 None:intergenic 40.0%
! AACAGCACGATGCATACTTT+TGG + chr4_2:57826188-57826207 Msa0610130:CDS 40.0%
! ACAGCACGATGCATACTTTT+GGG + chr4_2:57826189-57826208 Msa0610130:CDS 40.0%
AATGTCCTTGGCAACGATAA+GGG - chr4_2:57826303-57826322 None:intergenic 40.0%
CTACTCTTGAGCTACTATCT+AGG - chr4_2:57826567-57826586 None:intergenic 40.0%
!!! GGAACTCGGAGATTTTAGTT+AGG + chr4_2:57826633-57826652 Msa0610130:intron 40.0%
TAGTTAGGCCACAGAATTTC+GGG + chr4_2:57826648-57826667 Msa0610130:intron 40.0%
! CGGGGACGAAATTCATTTTA+AGG + chr4_2:57826667-57826686 Msa0610130:intron 40.0%
TTACATAGGGAGGTTTCATG+TGG - chr4_2:57826848-57826867 None:intergenic 40.0%
! TAGGGTTCATGGATTGAAGA+TGG + chr4_2:57827087-57827106 Msa0610130:intron 40.0%
CAGTTTCAGCCTAGAATTAG+AGG + chr4_2:57827179-57827198 Msa0610130:CDS 40.0%
TTTCAGCCTAGAATTAGAGG+TGG + chr4_2:57827182-57827201 Msa0610130:intron 40.0%
TTCAGCCTAGAATTAGAGGT+GGG + chr4_2:57827183-57827202 Msa0610130:intron 40.0%
TGGTTGTTGGGACAGATTTA+GGG + chr4_2:57827386-57827405 Msa0610130:intron 40.0%
CTTGAGAATACTCACACTCA+AGG + chr4_2:57828421-57828440 Msa0610130:intron 40.0%
TTCAGGATTTGCCTTTCTAC+TGG - chr4_2:57828613-57828632 None:intergenic 40.0%
CAGACTAGCATTTGAATCTG+AGG + chr4_2:57829081-57829100 Msa0610130:CDS 40.0%
TTTGAATCTGAGGGACTTGA+AGG + chr4_2:57829091-57829110 Msa0610130:CDS 40.0%
!! GTTTGGGAAGAAAGTGTCTT+TGG - chr4_2:57829180-57829199 None:intergenic 40.0%
! CTCATGTTTTCAATCAACGG+TGG + chr4_2:57829387-57829406 Msa0610130:CDS 40.0%
AGCAATCAAATGCCGAAACC+TGG - chr4_2:57826077-57826096 None:intergenic 45.0%
! AGAGAGTGGTGCCAAATTCA+AGG + chr4_2:57826107-57826126 Msa0610130:intron 45.0%
! TGCATCGTGCTGTTGACTAT+TGG - chr4_2:57826182-57826201 None:intergenic 45.0%
! CAGCACGATGCATACTTTTG+GGG + chr4_2:57826190-57826209 Msa0610130:CDS 45.0%
!!! GCATACTTTTGGGGTGGTAT+TGG + chr4_2:57826199-57826218 Msa0610130:CDS 45.0%
GAATGTCCTTGGCAACGATA+AGG - chr4_2:57826304-57826323 None:intergenic 45.0%
AGAATAGTGCAGCAGGAACT+CGG + chr4_2:57826619-57826638 Msa0610130:intron 45.0%
AGTTAGGCCACAGAATTTCG+GGG + chr4_2:57826649-57826668 Msa0610130:intron 45.0%
ATTTCGTCCCCGAAATTCTG+TGG - chr4_2:57826659-57826678 None:intergenic 45.0%
CTGGTTGTTGGGACAGATTT+AGG + chr4_2:57827385-57827404 Msa0610130:intron 45.0%
GGTTGTTGGGACAGATTTAG+GGG + chr4_2:57827387-57827406 Msa0610130:intron 45.0%
CTATCCAATGTAAACCCACC+GGG - chr4_2:57828371-57828390 None:intergenic 45.0%
CCTATCCAATGTAAACCCAC+CGG - chr4_2:57828372-57828391 None:intergenic 45.0%
! CGGTGGGTTTACATTGGATA+GGG + chr4_2:57828370-57828389 Msa0610130:intron 45.0%
! GGTGGGTTTACATTGGATAG+GGG + chr4_2:57828371-57828390 Msa0610130:intron 45.0%
TTCAGGATTCGCCTTTCTAC+TGG - chr4_2:57828535-57828554 None:intergenic 45.0%
CTGGACATCTTGATTCATCC+AGG - chr4_2:57828594-57828613 None:intergenic 45.0%
TCTCAGTGAGTTCCCAAACT+CGG - chr4_2:57828752-57828771 None:intergenic 45.0%
GATATCGGATCACAAGTGTC+TGG + chr4_2:57828842-57828861 Msa0610130:intron 45.0%
ATCTGAGGGACTTGAAGGTA+TGG + chr4_2:57829096-57829115 Msa0610130:CDS 45.0%
!! CACGATGCATACTTTTGGGG+TGG + chr4_2:57826193-57826212 Msa0610130:CDS 50.0%
! GTGGTATTGGAGACGAAGCA+TGG + chr4_2:57826212-57826231 Msa0610130:CDS 50.0%
!! TTTTCAGGGAGTGCAGTTCC+TGG + chr4_2:57826271-57826290 Msa0610130:CDS 50.0%
CAACGATAAGGGAACCAACC+AGG - chr4_2:57826292-57826311 None:intergenic 50.0%
TGGTTCCCTTATCGTTGCCA+AGG + chr4_2:57826295-57826314 Msa0610130:CDS 50.0%
TTGTGGTTGCTGGAGGAAGA+AGG - chr4_2:57826916-57826935 None:intergenic 50.0%
TCTTGTCTTGTGGTTGCTGG+AGG - chr4_2:57826923-57826942 None:intergenic 50.0%
GTCTCTTGTCTTGTGGTTGC+TGG - chr4_2:57826926-57826945 None:intergenic 50.0%
GGGAACCCACCTCTAATTCT+AGG - chr4_2:57827191-57827210 None:intergenic 50.0%
ATGCATGAGGAATGAGGGAG+GGG - chr4_2:57827211-57827230 None:intergenic 50.0%
GATGCATGAGGAATGAGGGA+GGG - chr4_2:57827212-57827231 None:intergenic 50.0%
TGATGCATGAGGAATGAGGG+AGG - chr4_2:57827213-57827232 None:intergenic 50.0%
TTGTGAGGGTTACACCGGAA+AGG + chr4_2:57828334-57828353 Msa0610130:intron 50.0%
TGTGAGGGTTACACCGGAAA+GGG + chr4_2:57828335-57828354 Msa0610130:intron 50.0%
GGGTGGAATCAAACCCTTTC+CGG - chr4_2:57828351-57828370 None:intergenic 50.0%
GGAAAGGGTTTGATTCCACC+CGG + chr4_2:57828350-57828369 Msa0610130:intron 50.0%
! CCGGTGGGTTTACATTGGAT+AGG + chr4_2:57828369-57828388 Msa0610130:intron 50.0%
TTAGAACTGCAGGGCAAACC+TGG + chr4_2:57828573-57828592 Msa0610130:intron 50.0%
CTCAGTGAGTTCCCAAACTC+GGG - chr4_2:57828751-57828770 None:intergenic 50.0%
!! AGCGACGACGATAGTCTTGT+TGG - chr4_2:57829345-57829364 None:intergenic 50.0%
TCAACGGTGGTGAAAGAGTG+TGG + chr4_2:57829400-57829419 Msa0610130:CDS 50.0%
AAGGGTTTGATTCCACCCGG+TGG + chr4_2:57828353-57828372 Msa0610130:intron 55.0%
AGGGTTTGATTCCACCCGGT+GGG + chr4_2:57828354-57828373 Msa0610130:intron 55.0%
! TCCACCCGGTGGGTTTACAT+TGG + chr4_2:57828364-57828383 Msa0610130:intron 55.0%
TCCAATGTAAACCCACCGGG+TGG - chr4_2:57828368-57828387 None:intergenic 55.0%
AGGGGTTTGATTCCTCCCGA+TGG + chr4_2:57828389-57828408 Msa0610130:intron 55.0%
GGGGTTTGATTCCTCCCGAT+GGG + chr4_2:57828390-57828409 Msa0610130:intron 55.0%
GTTTGATTCCTCCCGATGGG+CGG + chr4_2:57828393-57828412 Msa0610130:intron 55.0%
TCTCAAGAGTCACCGCCCAT+CGG - chr4_2:57828408-57828427 None:intergenic 55.0%
TCCACTGGAAGGGTCGAGAT+AGG + chr4_2:57829218-57829237 Msa0610130:CDS 55.0%
ACCTATCTCGACCCTTCCAG+TGG - chr4_2:57829222-57829241 None:intergenic 55.0%
CAAGACTATCGTCGTCGCTC+AGG + chr4_2:57829346-57829365 Msa0610130:CDS 55.0%
! CAGGGAGTGCAGTTCCTGGT+TGG + chr4_2:57826275-57826294 Msa0610130:CDS 60.0%
CTCAAGAGTCACCGCCCATC+GGG - chr4_2:57828407-57828426 None:intergenic 60.0%
!! GAGGCATTGCAGGGCAAACC+TGG + chr4_2:57828495-57828514 Msa0610130:intron 60.0%
AAGAGTCACCGCCCATCGGG+AGG - chr4_2:57828404-57828423 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 57825988 57829447 57825988 ID=Msa0610130;Name=Msa0610130
chr4_2 mRNA 57825988 57829447 57825988 ID=Msa0610130-mRNA-1;Parent=Msa0610130;Name=Msa0610130-mRNA-1;_AED=0.20;_eAED=0.33;_QI=0|0|0|1|0|0.5|4|0|285
chr4_2 exon 57825988 57826077 57825988 ID=Msa0610130-mRNA-1:exon:15048;Parent=Msa0610130-mRNA-1
chr4_2 exon 57826109 57826324 57826109 ID=Msa0610130-mRNA-1:exon:15049;Parent=Msa0610130-mRNA-1
chr4_2 exon 57827090 57827200 57827090 ID=Msa0610130-mRNA-1:exon:15050;Parent=Msa0610130-mRNA-1
chr4_2 exon 57829007 57829447 57829007 ID=Msa0610130-mRNA-1:exon:15051;Parent=Msa0610130-mRNA-1
chr4_2 CDS 57825988 57826077 57825988 ID=Msa0610130-mRNA-1:cds;Parent=Msa0610130-mRNA-1
chr4_2 CDS 57826109 57826324 57826109 ID=Msa0610130-mRNA-1:cds;Parent=Msa0610130-mRNA-1
chr4_2 CDS 57827090 57827200 57827090 ID=Msa0610130-mRNA-1:cds;Parent=Msa0610130-mRNA-1
chr4_2 CDS 57829007 57829447 57829007 ID=Msa0610130-mRNA-1:cds;Parent=Msa0610130-mRNA-1
Gene Sequence

>Msa0610130

ATGGCTCATCTCTCAAGTTTGAAATCACTTGATTTAAGTGACTGCAAAAGGCTTGAATGTATTCCAAAGCTTCCACAAAATATAAACCAGAGAGTGGTGCCAAATTCAAGGTTGAAACTCCTGTCTGATTCCAAAGAATGTACCTTCAAATTTTATTTCACCAATAGTCAACAGCACGATGCATACTTTTGGGGTGGTATTGGAGACGAAGCATGGATCATGATCAATGAATATAAGTCAGTGTTCTTCTGTTTTTCAGGGAGTGCAGTTCCTGGTTGGTTCCCTTATCGTTGCCAAGGACATTCAGGTTCATGGATTGAAGATGGAGAATTGGGAATCAAAGTAGAAATTGAAGAAATTAGGAGCAAGGAAAGAATGATTGAAGCTTTAATCGTCAGTTTCAGCCTAGAATTAGAGTTTAAAATCTCTGGTTGTTACAAATGCTCTGAATATGTGGATTACACAAGAACAAGAGATAGTGACTTTACATACAGACTAGCATTTGAATCTGAGGGACTTGAAGGTATGGATTACAAAAGAACAAGAGGTGGTAAATTTACCTTCAGACTATCATTTGAATCTCAGGGCCAAAGACACTTTCTTCCCAAACATGAGCTAAAAAACTATTTCCACTGGAAGGGTCGAGATAGGTTTTCTGTCCAAGAAGATCACACATTTCTTTGGAAATATCAATTGGACTTTGAAAGAATTGGCAGCAAGCTATTTCATGCCCAACACTTCATTTTTGAGATCCAACAAGACTATCGTCGTCGCTCAGGTGTCCAAAATCATTATCTCTCATGTTTTCAATCAACGGTGGTGAAAGAGTGTGGAATATGTCCTCTGTATGCCAAATAA

Protein sequence

>Msa0610130

MAHLSSLKSLDLSDCKRLECIPKLPQNINQRVVPNSRLKLLSDSKECTFKFYFTNSQQHDAYFWGGIGDEAWIMINEYKSVFFCFSGSAVPGWFPYRCQGHSGSWIEDGELGIKVEIEEIRSKERMIEALIVSFSLELEFKISGCYKCSEYVDYTRTRDSDFTYRLAFESEGLEGMDYKRTRGGKFTFRLSFESQGQRHFLPKHELKNYFHWKGRDRFSVQEDHTFLWKYQLDFERIGSKLFHAQHFIFEIQQDYRRRSGVQNHYLSCFQSTVVKECGICPLYAK*