AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1001390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001390 MtrunA17_Chr6g0488101 92.105 456 30 3 1 451 1 455 0.0 862
Msa1001390 MtrunA17_Chr6g0488271 92.530 415 29 1 39 451 1 415 0.0 798
Msa1001390 MtrunA17_Chr3g0112311 70.000 360 96 4 96 449 2 355 1.69e-175 495
Msa1001390 MtrunA17_Chr4g0075971 52.339 449 188 8 8 451 175 602 2.88e-148 435
Msa1001390 MtrunA17_Chr6g0452641 62.426 338 119 6 120 451 5 340 2.15e-141 408
Msa1001390 MtrunA17_Chr3g0077901 57.967 364 140 4 91 450 17 371 3.92e-141 409
Msa1001390 MtrunA17_Chr3g0077851 57.849 344 132 4 111 450 1 335 1.17e-130 380
Msa1001390 MtrunA17_Chr3g0077801 54.366 355 149 5 98 448 4 349 7.50e-130 379
Msa1001390 MtrunA17_Chr3g0122991 58.750 320 79 3 97 409 2 275 1.17e-121 355
Msa1001390 MtrunA17_Chr7g0252101 46.799 453 196 14 8 451 16 432 7.24e-115 344
Msa1001390 MtrunA17_Chr3g0093911 52.198 364 151 9 96 451 2 350 3.89e-110 329
Msa1001390 MtrunA17_Chr1g0207351 51.781 365 150 10 99 451 16 366 2.18e-106 320
Msa1001390 MtrunA17_Chr3g0123471 61.481 270 92 4 175 443 1 259 9.92e-106 314
Msa1001390 MtrunA17_Chr7g0243331 49.157 356 166 7 100 451 6 350 1.64e-100 304
Msa1001390 MtrunA17_Chr6g0486591 88.679 159 18 0 293 451 1 159 5.38e-97 288
Msa1001390 MtrunA17_Chr1g0209051 51.064 282 120 5 175 450 1 270 1.69e-81 253
Msa1001390 MtrunA17_Chr4g0075861 50.485 206 90 5 8 211 175 370 6.56e-53 182
Msa1001390 MtrunA17_Chr7g0243391 49.533 214 102 4 91 300 14 225 2.49e-51 173
Msa1001390 MtrunA17_Chr1g0202841 49.727 183 79 4 272 451 7 179 3.79e-48 163
Msa1001390 MtrunA17_Chr1g0196231 52.941 153 66 3 86 236 218 366 2.40e-42 153
Msa1001390 MtrunA17_Chr6g0486601 66.038 106 22 2 1 92 1 106 3.61e-36 129
Msa1001390 MtrunA17_Chr1g0206951 57.522 113 46 2 98 208 2 114 2.03e-35 127
Msa1001390 MtrunA17_Chr1g0187941 50.000 124 56 2 272 392 7 127 7.46e-27 105
Msa1001390 MtrunA17_Chr7g0238781 41.045 134 76 3 127 259 27 158 7.03e-24 97.4
Msa1001390 MtrunA17_Chr1g0209191 49.020 102 46 3 351 450 1 98 5.49e-22 90.1
Msa1001390 MtrunA17_Chr6g0459061 24.834 302 220 3 107 406 22 318 6.39e-21 94.0
Msa1001390 MtrunA17_Chr1g0196241 52.381 84 32 2 342 424 3 79 2.09e-20 85.5
Msa1001390 MtrunA17_Chr1g0209061 63.158 57 18 1 78 134 54 107 1.26e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCGTAATCGTTTAATTT+TGG 0.114594 6_4:+85161946 Msa1001390:CDS
TCGGATCTGAATCTGAATTT+TGG 0.148836 6_4:+85161677 None:intergenic
AGCATCTTTCTTCTTGTAAA+TGG 0.165071 6_4:-85163503 None:intergenic
TTCTTTGATTTGCGAATAAA+TGG 0.201776 6_4:+85164292 Msa1001390:three_prime_UTR
GACAAATTCCTTTGAGCCTT+TGG 0.209409 6_4:-85163591 None:intergenic
TTTGATGACCTCTTTCAATT+TGG 0.282653 6_4:+85163239 Msa1001390:CDS
GTGTAACTTCTACTTATTAT+TGG 0.283816 6_4:+85163819 Msa1001390:CDS
TTATGTCAAGTTGGAATCTT+TGG 0.283864 6_4:+85163943 Msa1001390:CDS
AAACCAGGAATAATGAATTC+TGG 0.300415 6_4:-85164112 None:intergenic
ATGCCAGAATTCATTATTCC+TGG 0.335290 6_4:+85164109 Msa1001390:CDS
AGGATGAATAAGGTACTTAA+AGG 0.337066 6_4:+85161926 Msa1001390:CDS
ATGGCAAACGAACATGGAAT+TGG 0.345392 6_4:+85161764 Msa1001390:CDS
TTTCAAAGAAAGGATGAATA+AGG 0.348934 6_4:+85161916 Msa1001390:CDS
ATCAATCTCGAAATCTTTGT+TGG 0.349123 6_4:+85163654 Msa1001390:CDS
TGCTTATTACTCTACACTTT+GGG 0.350846 6_4:+85164246 Msa1001390:three_prime_UTR
TGACCAACTCGTTGTCGAAT+TGG 0.361665 6_4:-85162007 None:intergenic
AATTTATTGGAGGAATTTCA+TGG 0.361680 6_4:+85163295 Msa1001390:CDS
TACTTCCGATTTGCCTATCA+TGG 0.378106 6_4:+85163422 Msa1001390:CDS
ATGTTCCATGTGGCAAATAC+AGG 0.390944 6_4:+85164062 Msa1001390:CDS
CTCAAAGGAATTTGTCTTGG+TGG 0.392911 6_4:+85163598 Msa1001390:CDS
GGCAAATACAGGGTGTATAA+AGG 0.407440 6_4:+85164073 Msa1001390:CDS
CAGTTCAAAATTTCAAAGAA+AGG 0.407992 6_4:+85161906 Msa1001390:CDS
ATGCTTATTACTCTACACTT+TGG 0.408617 6_4:+85164245 Msa1001390:three_prime_UTR
AAGAGAACTGTCAACTTCCT+TGG 0.409046 6_4:+85163183 Msa1001390:CDS
TATGTCAAGTTGGAATCTTT+GGG 0.417393 6_4:+85163944 Msa1001390:CDS
CAAAACAACGTTACATAGAT+TGG 0.418259 6_4:+85164173 Msa1001390:CDS
TGCTTATTCGACACCACATA+AGG 0.426056 6_4:+85163679 Msa1001390:CDS
ATTTCTCAAGAGCACACCTT+TGG 0.430884 6_4:-85163340 None:intergenic
TTGGACAAGTAATGGTTCTT+CGG 0.433887 6_4:-85163321 None:intergenic
AAAAGCAAGCAAGACTTTGC+AGG 0.442399 6_4:-85163567 None:intergenic
CGAACATGGAATTGGGTTTG+TGG 0.442412 6_4:+85161772 Msa1001390:CDS
TGATTCGATGATCATTCATC+AGG 0.445423 6_4:-85161874 None:intergenic
AGAGAACTGTCAACTTCCTT+GGG 0.449563 6_4:+85163184 Msa1001390:CDS
CTTATTATTGGTCACATGTA+GGG 0.454287 6_4:+85163831 Msa1001390:CDS
AATCTGTGTTTCATGGTAAG+AGG 0.457161 6_4:+85161804 Msa1001390:CDS
TATTACTCTACACTTTGGGT+TGG 0.470901 6_4:+85164250 Msa1001390:three_prime_UTR
TGGCAAACGAACATGGAATT+GGG 0.471607 6_4:+85161765 Msa1001390:CDS
GCATTTCTTGTTGTGGATTG+TGG 0.473401 6_4:+85164416 Msa1001390:three_prime_UTR
ACTTATTATTGGTCACATGT+AGG 0.485498 6_4:+85163830 Msa1001390:CDS
TTCGACAACGAGTTGGTCAT+AGG 0.491453 6_4:+85162011 Msa1001390:CDS
CACTGAGCAACCCGCACATG+TGG 0.491738 6_4:+85164008 Msa1001390:CDS
GAAGTAAAATCTGTGTTTCA+TGG 0.497275 6_4:+85161797 Msa1001390:CDS
GGATGAATAAGGTACTTAAA+GGG 0.501407 6_4:+85161927 Msa1001390:CDS
AATTCCATGTTCGTTTGCCA+TGG 0.506447 6_4:-85161762 None:intergenic
TTAGAATTGAAGAGTACTCC+TGG 0.509421 6_4:+85163797 Msa1001390:CDS
GCCTATCATGGGTCTTCTAG+TGG 0.510972 6_4:+85163434 Msa1001390:CDS
AGTTGTAGCATTTCTTGTTG+TGG 0.514265 6_4:+85164409 Msa1001390:three_prime_UTR
GTAGGGTTGGTTAGTTGTGA+TGG 0.514554 6_4:+85163848 Msa1001390:CDS
AGGCTCAAAGGAATTTGTCT+TGG 0.518897 6_4:+85163595 Msa1001390:CDS
ATCTGTGTTTCATGGTAAGA+GGG 0.519830 6_4:+85161805 Msa1001390:CDS
AAGACCCATGATAGGCAAAT+CGG 0.519986 6_4:-85163427 None:intergenic
TCCACTAGAAGACCCATGAT+AGG 0.522961 6_4:-85163435 None:intergenic
TCTCATAACCCCACATGTGC+GGG 0.524492 6_4:-85164018 None:intergenic
TACCATGGATTATGTCAAGT+TGG 0.524896 6_4:+85163934 Msa1001390:CDS
GCACACCTTTGGACAAGTAA+TGG 0.525599 6_4:-85163329 None:intergenic
GCCTCCATGGCAAACGAACA+TGG 0.527907 6_4:+85161758 Msa1001390:exon
AGCTAAGCAAGCAGCCTCCA+TGG 0.530098 6_4:+85161745 Msa1001390:exon
CAAGCTGAGTATCCCTATGC+TGG 0.530853 6_4:-85163753 None:intergenic
GAGCGGCAATAAATAGGATG+TGG 0.532946 6_4:-85164151 None:intergenic
TTATTGGTCACATGTAGGGT+TGG 0.540929 6_4:+85163835 Msa1001390:CDS
AAATGCTACAACTACAAGCT+AGG 0.548587 6_4:-85164399 None:intergenic
TTCTCATAACCCCACATGTG+CGG 0.553716 6_4:-85164019 None:intergenic
GTCACTGACAAGGCCAGCAT+AGG 0.559222 6_4:+85163740 Msa1001390:CDS
ATACACTACCAAATTGAAAG+AGG 0.560319 6_4:-85163247 None:intergenic
GCAAAGTCAACAACCTTATG+TGG 0.566743 6_4:-85163692 None:intergenic
TACACCCTGTATTTGCCACA+TGG 0.574023 6_4:-85164067 None:intergenic
TCCATGTTCGTTTGCCATGG+AGG 0.575112 6_4:-85161759 None:intergenic
CAACGAGTTGGTCATAGGAA+TGG 0.576946 6_4:+85162016 Msa1001390:CDS
TCACTGACAAGGCCAGCATA+GGG 0.582154 6_4:+85163741 Msa1001390:CDS
ACTTCCGATTTGCCTATCAT+GGG 0.586293 6_4:+85163423 Msa1001390:CDS
GAGTGATAAACTTTATCGTG+AGG 0.586533 6_4:-85163383 None:intergenic
TAGACATCTACAATATGAGG+TGG 0.595781 6_4:+85164201 Msa1001390:CDS
TTCCAACTTGACATAATCCA+TGG 0.602044 6_4:-85163936 None:intergenic
CTTCCAATTCGACAACGAGT+TGG 0.607277 6_4:+85162004 Msa1001390:CDS
TGTTCCATGTGGCAAATACA+GGG 0.612242 6_4:+85164063 Msa1001390:CDS
ACTGAGCAACCCGCACATGT+GGG 0.619433 6_4:+85164009 Msa1001390:CDS
CTGAGCAACCCGCACATGTG+GGG 0.626393 6_4:+85164010 Msa1001390:CDS
CATATATGTTGTCACTGACA+AGG 0.628257 6_4:+85163730 Msa1001390:CDS
ACATGGAATTGGGTTTGTGG+AGG 0.628720 6_4:+85161775 Msa1001390:CDS
CAAGATAGACTTCTCTACCA+TGG 0.632047 6_4:+85163919 Msa1001390:CDS
AAGAACCATTACTTGTCCAA+AGG 0.641369 6_4:+85163324 Msa1001390:CDS
AATACGACGATGCTTCATGT+AGG 0.643363 6_4:-85161978 None:intergenic
TTTGCCACATGGAACATCGA+TGG 0.643688 6_4:-85164056 None:intergenic
AGTTCACTAAGTTTAAAACC+AGG 0.645687 6_4:-85164127 None:intergenic
TAATAAGTAGAAGTTACACC+AGG 0.647803 6_4:-85163815 None:intergenic
GATTCGATGATCATTCATCA+GGG 0.648898 6_4:-85161873 None:intergenic
ATGATGTCAAGCAAATCCCA+AGG 0.658074 6_4:-85163200 None:intergenic
TATGCCATCGATGTTCCATG+TGG 0.717545 6_4:+85164052 Msa1001390:CDS
TCGATGATCATTCATCAGGG+TGG 0.722997 6_4:-85161870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATAATTATTTATATGT+TGG + chr6_4:85162973-85162992 Msa1001390:intron 10.0%
!!! GAGAATTTTATAAAATTTAT+TGG + chr6_4:85163282-85163301 Msa1001390:CDS 10.0%
!!! AATTTTATAAAATTTATTGG+AGG + chr6_4:85163285-85163304 Msa1001390:CDS 10.0%
!! CAGAAAAACATAAAAAAATA+AGG + chr6_4:85162947-85162966 Msa1001390:intron 15.0%
!!! AATCTGATATATGTATGTTT+TGG + chr6_4:85162152-85162171 Msa1001390:intron 20.0%
!!! ATCTGATATATGTATGTTTT+GGG + chr6_4:85162153-85162172 Msa1001390:intron 20.0%
!! GGAAAAGAAAAAAAAAACAA+AGG + chr6_4:85162391-85162410 Msa1001390:intron 20.0%
!! AAAGAAAAAAAAAACAAAGG+CGG + chr6_4:85162394-85162413 Msa1001390:intron 20.0%
!! TAAGTACAATATCAAATGAA+CGG - chr6_4:85162761-85162780 None:intergenic 20.0%
!! GATATTTGTTTCGAAAAAAT+GGG + chr6_4:85163000-85163019 Msa1001390:intron 20.0%
!! AAGAAAAAACAAATAGAACA+AGG - chr6_4:85164277-85164296 None:intergenic 20.0%
!! ATGATTGAAAAATGTTGTAA+TGG + chr6_4:85164317-85164336 Msa1001390:three_prime_UTR 20.0%
!!! ATGGTTTACAGTTTTATTAT+TGG + chr6_4:85164336-85164355 Msa1001390:three_prime_UTR 20.0%
!!! AATCTGAATTTTGGATTAGT+CGG + chr6_4:85161686-85161705 Msa1001390:five_prime_UTR 25.0%
!!! CTTTCTTTGAAATTTTGAAC+TGG - chr6_4:85161908-85161927 None:intergenic 25.0%
! CAGTTCAAAATTTCAAAGAA+AGG + chr6_4:85161906-85161925 Msa1001390:CDS 25.0%
! TTTCAAAGAAAGGATGAATA+AGG + chr6_4:85161916-85161935 Msa1001390:CDS 25.0%
!! TCTGATATATGTATGTTTTG+GGG + chr6_4:85162154-85162173 Msa1001390:intron 25.0%
! AATATTATTCGTTTGTAGCT+AGG + chr6_4:85162297-85162316 Msa1001390:intron 25.0%
!!! TTTTTTTTTCTTTTCCCTAG+CGG - chr6_4:85162387-85162406 None:intergenic 25.0%
!!! TATAGATTTTTCAGTTCTTG+CGG - chr6_4:85162672-85162691 None:intergenic 25.0%
! AAGTACAATATCAAATGAAC+GGG - chr6_4:85162760-85162779 None:intergenic 25.0%
! GAAATTAAACTACAACAACT+AGG + chr6_4:85162900-85162919 Msa1001390:intron 25.0%
! CGATATTTGTTTCGAAAAAA+TGG + chr6_4:85162999-85163018 Msa1001390:intron 25.0%
!! CTCATTTTCTATGATGTTAT+GGG + chr6_4:85163044-85163063 Msa1001390:intron 25.0%
! AATTTATTGGAGGAATTTCA+TGG + chr6_4:85163295-85163314 Msa1001390:CDS 25.0%
! GTGTAACTTCTACTTATTAT+TGG + chr6_4:85163819-85163838 Msa1001390:CDS 25.0%
!! AGTGCTTAATTTTATGTCAA+AGG + chr6_4:85163880-85163899 Msa1001390:CDS 25.0%
!! TTTTAGACATCTACAATATG+AGG + chr6_4:85164198-85164217 Msa1001390:CDS 25.0%
!!! TTCTTTGATTTGCGAATAAA+TGG + chr6_4:85164292-85164311 Msa1001390:three_prime_UTR 25.0%
GAAGTAAAATCTGTGTTTCA+TGG + chr6_4:85161797-85161816 Msa1001390:CDS 30.0%
! AGGATGAATAAGGTACTTAA+AGG + chr6_4:85161926-85161945 Msa1001390:CDS 30.0%
! GGATGAATAAGGTACTTAAA+GGG + chr6_4:85161927-85161946 Msa1001390:CDS 30.0%
!! CTGATATATGTATGTTTTGG+GGG + chr6_4:85162155-85162174 Msa1001390:intron 30.0%
! CAATTTTGCAAATATCACAC+CGG - chr6_4:85162197-85162216 None:intergenic 30.0%
TTTGTAGCTAGGTATCATAA+TGG + chr6_4:85162308-85162327 Msa1001390:intron 30.0%
TGTTAGTAGATTTCTTAGGT+TGG - chr6_4:85162520-85162539 None:intergenic 30.0%
CATGTGTTAGTAGATTTCTT+AGG - chr6_4:85162524-85162543 None:intergenic 30.0%
GCAAGAACTGAAAAATCTAT+AGG + chr6_4:85162671-85162690 Msa1001390:intron 30.0%
ATTCATTGCAAGCTATAACT+AGG + chr6_4:85162869-85162888 Msa1001390:intron 30.0%
CCATAACATCATAGAAAATG+AGG - chr6_4:85163046-85163065 None:intergenic 30.0%
! CCTCATTTTCTATGATGTTA+TGG + chr6_4:85163043-85163062 Msa1001390:intron 30.0%
CAAAGGACAAAAAAAGAAGA+AGG + chr6_4:85163157-85163176 Msa1001390:intron 30.0%
! ATTTGCTTGACATCATTTTG+AGG + chr6_4:85163207-85163226 Msa1001390:CDS 30.0%
! TTTGATGACCTCTTTCAATT+TGG + chr6_4:85163239-85163258 Msa1001390:CDS 30.0%
ATACACTACCAAATTGAAAG+AGG - chr6_4:85163250-85163269 None:intergenic 30.0%
!! TTGGTAGTGTATGCAAAAAT+TGG + chr6_4:85163258-85163277 Msa1001390:CDS 30.0%
AGCATCTTTCTTCTTGTAAA+TGG - chr6_4:85163506-85163525 None:intergenic 30.0%
ATCAATCTCGAAATCTTTGT+TGG + chr6_4:85163654-85163673 Msa1001390:CDS 30.0%
TAATAAGTAGAAGTTACACC+AGG - chr6_4:85163818-85163837 None:intergenic 30.0%
ACTTATTATTGGTCACATGT+AGG + chr6_4:85163830-85163849 Msa1001390:CDS 30.0%
CTTATTATTGGTCACATGTA+GGG + chr6_4:85163831-85163850 Msa1001390:CDS 30.0%
!! TTATGTCAAGTTGGAATCTT+TGG + chr6_4:85163943-85163962 Msa1001390:CDS 30.0%
!! TATGTCAAGTTGGAATCTTT+GGG + chr6_4:85163944-85163963 Msa1001390:CDS 30.0%
AAACCAGGAATAATGAATTC+TGG - chr6_4:85164115-85164134 None:intergenic 30.0%
! AGTTCACTAAGTTTAAAACC+AGG - chr6_4:85164130-85164149 None:intergenic 30.0%
CAAAACAACGTTACATAGAT+TGG + chr6_4:85164173-85164192 Msa1001390:CDS 30.0%
ATGCTTATTACTCTACACTT+TGG + chr6_4:85164245-85164264 Msa1001390:three_prime_UTR 30.0%
TGCTTATTACTCTACACTTT+GGG + chr6_4:85164246-85164265 Msa1001390:three_prime_UTR 30.0%
!!! CAAGTTTTGAGATAGTATAG+AGG + chr6_4:85164360-85164379 Msa1001390:three_prime_UTR 30.0%
AATCTGTGTTTCATGGTAAG+AGG + chr6_4:85161804-85161823 Msa1001390:CDS 35.0%
ATCTGTGTTTCATGGTAAGA+GGG + chr6_4:85161805-85161824 Msa1001390:CDS 35.0%
GATTCGATGATCATTCATCA+GGG - chr6_4:85161876-85161895 None:intergenic 35.0%
TGATTCGATGATCATTCATC+AGG - chr6_4:85161877-85161896 None:intergenic 35.0%
! GAAATTTTGAACTGGAAGTC+TGG - chr6_4:85161900-85161919 None:intergenic 35.0%
!! AGGGCGTAATCGTTTAATTT+TGG + chr6_4:85161946-85161965 Msa1001390:CDS 35.0%
!! GGGCGTAATCGTTTAATTTT+GGG + chr6_4:85161947-85161966 Msa1001390:CDS 35.0%
!!! TGTCATTTTAGCATACACCA+AGG + chr6_4:85162226-85162245 Msa1001390:intron 35.0%
AAATTGTACTCAACTCTCCT+TGG - chr6_4:85162246-85162265 None:intergenic 35.0%
TTCTCCAACAAATAACTGTC+TGG + chr6_4:85162264-85162283 Msa1001390:intron 35.0%
AACACCAGACAGTTATTTGT+TGG - chr6_4:85162271-85162290 None:intergenic 35.0%
TTACACTAACTCACTCATGT+AGG - chr6_4:85162346-85162365 None:intergenic 35.0%
! AGTGGTTAGTTCCGATTATA+AGG - chr6_4:85162422-85162441 None:intergenic 35.0%
GTTCATTCATATTGTGACAG+TGG - chr6_4:85162440-85162459 None:intergenic 35.0%
TCACAATATGAATGAACAGC+AGG + chr6_4:85162443-85162462 Msa1001390:intron 35.0%
GGCTGCTTAATTGTATATGT+AGG - chr6_4:85162499-85162518 None:intergenic 35.0%
!! TTTTTCAGTTCTTGCGGTTT+TGG - chr6_4:85162666-85162685 None:intergenic 35.0%
! TTTGGAGTAATAAATGCGGA+AGG - chr6_4:85162706-85162725 None:intergenic 35.0%
TTCCGCATTTATTACTCCAA+AGG + chr6_4:85162705-85162724 Msa1001390:intron 35.0%
!! CACCTTTGGAGTAATAAATG+CGG - chr6_4:85162710-85162729 None:intergenic 35.0%
GTGTTAATAGTGTGAATGCT+AGG - chr6_4:85162815-85162834 None:intergenic 35.0%
CATTTCCAGATGGAATGATA+GGG - chr6_4:85162840-85162859 None:intergenic 35.0%
CTATCATTCCATCTGGAAAT+GGG + chr6_4:85162839-85162858 Msa1001390:intron 35.0%
! TATAGCTTGCAATGAATAGC+CGG - chr6_4:85162866-85162885 None:intergenic 35.0%
ATTGCAAGCTATAACTAGGT+AGG + chr6_4:85162873-85162892 Msa1001390:intron 35.0%
AAGCTATAACTAGGTAGGAT+TGG + chr6_4:85162878-85162897 Msa1001390:intron 35.0%
TTAAACTACAACAACTAGGC+AGG + chr6_4:85162904-85162923 Msa1001390:intron 35.0%
TCACAACAAACAACGATGTT+AGG - chr6_4:85163135-85163154 None:intergenic 35.0%
!! CGTTGTTTGTTGTGATACAA+AGG + chr6_4:85163140-85163159 Msa1001390:intron 35.0%
TTGGACAAGTAATGGTTCTT+CGG - chr6_4:85163324-85163343 None:intergenic 35.0%
AAGAACCATTACTTGTCCAA+AGG + chr6_4:85163324-85163343 Msa1001390:CDS 35.0%
GAGTGATAAACTTTATCGTG+AGG - chr6_4:85163386-85163405 None:intergenic 35.0%
CATATATGTTGTCACTGACA+AGG + chr6_4:85163730-85163749 Msa1001390:CDS 35.0%
!! TTAGAATTGAAGAGTACTCC+TGG + chr6_4:85163797-85163816 Msa1001390:CDS 35.0%
! TACCATGGATTATGTCAAGT+TGG + chr6_4:85163934-85163953 Msa1001390:CDS 35.0%
TTCCAACTTGACATAATCCA+TGG - chr6_4:85163939-85163958 None:intergenic 35.0%
! CTCAGTGCATAATACCTTTT+CGG - chr6_4:85163995-85164014 None:intergenic 35.0%
ATGCCAGAATTCATTATTCC+TGG + chr6_4:85164109-85164128 Msa1001390:CDS 35.0%
!! TGTTTTGAGCGGCAATAAAT+AGG - chr6_4:85164160-85164179 None:intergenic 35.0%
!!! CTATGTAACGTTGTTTTGAG+CGG - chr6_4:85164171-85164190 None:intergenic 35.0%
TAGACATCTACAATATGAGG+TGG + chr6_4:85164201-85164220 Msa1001390:CDS 35.0%
TATTACTCTACACTTTGGGT+TGG + chr6_4:85164250-85164269 Msa1001390:three_prime_UTR 35.0%
AAATGCTACAACTACAAGCT+AGG - chr6_4:85164402-85164421 None:intergenic 35.0%
AGTTGTAGCATTTCTTGTTG+TGG + chr6_4:85164409-85164428 Msa1001390:three_prime_UTR 35.0%
AATTCCATGTTCGTTTGCCA+TGG - chr6_4:85161765-85161784 None:intergenic 40.0%
ATGGCAAACGAACATGGAAT+TGG + chr6_4:85161764-85161783 Msa1001390:CDS 40.0%
TGGCAAACGAACATGGAATT+GGG + chr6_4:85161765-85161784 Msa1001390:CDS 40.0%
AATACGACGATGCTTCATGT+AGG - chr6_4:85161981-85162000 None:intergenic 40.0%
CTTATTTCACAAAATCCGCC+CGG + chr6_4:85162118-85162137 Msa1001390:intron 40.0%
TTATTTCACAAAATCCGCCC+GGG + chr6_4:85162119-85162138 Msa1001390:intron 40.0%
ATCAGATTCTCTATTCGACC+CGG - chr6_4:85162140-85162159 None:intergenic 40.0%
GGGAAAATTTGACTCACTTC+CGG + chr6_4:85162175-85162194 Msa1001390:intron 40.0%
ACTAACTCACTCATGTAGGA+AGG - chr6_4:85162342-85162361 None:intergenic 40.0%
ACCCAAAACCAAACACAATG+AGG + chr6_4:85162473-85162492 Msa1001390:intron 40.0%
!!! GCCTCATTGTGTTTGGTTTT+GGG - chr6_4:85162477-85162496 None:intergenic 40.0%
TATGTAGGCCTCATTGTGTT+TGG - chr6_4:85162484-85162503 None:intergenic 40.0%
! GGTTTGGTTTCAAAGGCTTT+GGG - chr6_4:85162557-85162576 None:intergenic 40.0%
CGCATTTATTACTCCAAAGG+TGG + chr6_4:85162708-85162727 Msa1001390:intron 40.0%
TGAACGGGATGTTCATGAAT+GGG - chr6_4:85162745-85162764 None:intergenic 40.0%
ATGAACGGGATGTTCATGAA+TGG - chr6_4:85162746-85162765 None:intergenic 40.0%
GCTATACAACACATTGCTTC+CGG + chr6_4:85162782-85162801 Msa1001390:intron 40.0%
CTATACAACACATTGCTTCC+GGG + chr6_4:85162783-85162802 Msa1001390:intron 40.0%
CCATTTCCAGATGGAATGAT+AGG - chr6_4:85162841-85162860 None:intergenic 40.0%
CCTATCATTCCATCTGGAAA+TGG + chr6_4:85162838-85162857 Msa1001390:intron 40.0%
AAGAGAACTGTCAACTTCCT+TGG + chr6_4:85163183-85163202 Msa1001390:CDS 40.0%
AGAGAACTGTCAACTTCCTT+GGG + chr6_4:85163184-85163203 Msa1001390:CDS 40.0%
ATGATGTCAAGCAAATCCCA+AGG - chr6_4:85163203-85163222 None:intergenic 40.0%
! ATTTCTCAAGAGCACACCTT+TGG - chr6_4:85163343-85163362 None:intergenic 40.0%
! TACTTCCGATTTGCCTATCA+TGG + chr6_4:85163422-85163441 Msa1001390:CDS 40.0%
! ACTTCCGATTTGCCTATCAT+GGG + chr6_4:85163423-85163442 Msa1001390:CDS 40.0%
AAGACCCATGATAGGCAAAT+CGG - chr6_4:85163430-85163449 None:intergenic 40.0%
AAAAGCAAGCAAGACTTTGC+AGG - chr6_4:85163570-85163589 None:intergenic 40.0%
!!! GTCTTGCTTGCTTTTTCCAA+AGG + chr6_4:85163575-85163594 Msa1001390:CDS 40.0%
!!! TGCTTTTTCCAAAGGCTCAA+AGG + chr6_4:85163583-85163602 Msa1001390:CDS 40.0%
GACAAATTCCTTTGAGCCTT+TGG - chr6_4:85163594-85163613 None:intergenic 40.0%
AGGCTCAAAGGAATTTGTCT+TGG + chr6_4:85163595-85163614 Msa1001390:CDS 40.0%
CTCAAAGGAATTTGTCTTGG+TGG + chr6_4:85163598-85163617 Msa1001390:CDS 40.0%
TGCTTATTCGACACCACATA+AGG + chr6_4:85163679-85163698 Msa1001390:CDS 40.0%
GCAAAGTCAACAACCTTATG+TGG - chr6_4:85163695-85163714 None:intergenic 40.0%
TTATTGGTCACATGTAGGGT+TGG + chr6_4:85163835-85163854 Msa1001390:CDS 40.0%
CAAGATAGACTTCTCTACCA+TGG + chr6_4:85163919-85163938 Msa1001390:CDS 40.0%
! TATTTTGTGTTCCGCCGAAA+AGG + chr6_4:85163978-85163997 Msa1001390:CDS 40.0%
! AGTGCATAATACCTTTTCGG+CGG - chr6_4:85163992-85164011 None:intergenic 40.0%
ATGTTCCATGTGGCAAATAC+AGG + chr6_4:85164062-85164081 Msa1001390:CDS 40.0%
TGTTCCATGTGGCAAATACA+GGG + chr6_4:85164063-85164082 Msa1001390:CDS 40.0%
GGCAAATACAGGGTGTATAA+AGG + chr6_4:85164073-85164092 Msa1001390:CDS 40.0%
! GCATTTCTTGTTGTGGATTG+TGG + chr6_4:85164416-85164435 Msa1001390:three_prime_UTR 40.0%
CGAACATGGAATTGGGTTTG+TGG + chr6_4:85161772-85161791 Msa1001390:CDS 45.0%
ACATGGAATTGGGTTTGTGG+AGG + chr6_4:85161775-85161794 Msa1001390:CDS 45.0%
TCGATGATCATTCATCAGGG+TGG - chr6_4:85161873-85161892 None:intergenic 45.0%
CTTCCAATTCGACAACGAGT+TGG + chr6_4:85162004-85162023 Msa1001390:CDS 45.0%
TGACCAACTCGTTGTCGAAT+TGG - chr6_4:85162010-85162029 None:intergenic 45.0%
!! TTCGACAACGAGTTGGTCAT+AGG + chr6_4:85162011-85162030 Msa1001390:CDS 45.0%
!! CAACGAGTTGGTCATAGGAA+TGG + chr6_4:85162016-85162035 Msa1001390:CDS 45.0%
TCAGATTCTCTATTCGACCC+GGG - chr6_4:85162139-85162158 None:intergenic 45.0%
CAAAGGCGGTGCCTTATAAT+CGG + chr6_4:85162408-85162427 Msa1001390:intron 45.0%
ATGAATGAACAGCAGGCCAA+AGG + chr6_4:85162450-85162469 Msa1001390:intron 45.0%
!!! GTGTTTGGTTTTGGGTCCTT+TGG - chr6_4:85162469-85162488 None:intergenic 45.0%
!! GGCCTCATTGTGTTTGGTTT+TGG - chr6_4:85162478-85162497 None:intergenic 45.0%
!! CGGTTTGGTTTCAAAGGCTT+TGG - chr6_4:85162558-85162577 None:intergenic 45.0%
!! GTTCTGCGGTTTGGTTTCAA+AGG - chr6_4:85162564-85162583 None:intergenic 45.0%
! GAGGTTTTTGTTCTGCGGTT+TGG - chr6_4:85162573-85162592 None:intergenic 45.0%
! CTCAGGAGGTTTTTGTTCTG+CGG - chr6_4:85162578-85162597 None:intergenic 45.0%
AAAAACCTCCTGAGCAAAGC+TGG + chr6_4:85162584-85162603 Msa1001390:intron 45.0%
AAAACCTCCTGAGCAAAGCT+GGG + chr6_4:85162585-85162604 Msa1001390:intron 45.0%
! GATTGGCATTGTGTTGCTGT+GGG - chr6_4:85162619-85162638 None:intergenic 45.0%
! TGATTGGCATTGTGTTGCTG+TGG - chr6_4:85162620-85162639 None:intergenic 45.0%
GAGGATTGCTTCAAGCTGAT+TGG - chr6_4:85162636-85162655 None:intergenic 45.0%
!!! TTGCGGTTTTGGAGGTTTTG+AGG - chr6_4:85162655-85162674 None:intergenic 45.0%
!! TTCAGTTCTTGCGGTTTTGG+AGG - chr6_4:85162663-85162682 None:intergenic 45.0%
ATGTTCATGAATGGGTGTGG+GGG - chr6_4:85162737-85162756 None:intergenic 45.0%
GATGTTCATGAATGGGTGTG+GGG - chr6_4:85162738-85162757 None:intergenic 45.0%
GGATGTTCATGAATGGGTGT+GGG - chr6_4:85162739-85162758 None:intergenic 45.0%
CACAACCCTATCATTCCATC+TGG + chr6_4:85162832-85162851 Msa1001390:intron 45.0%
ATTCCATCTGGAAATGGGAC+CGG + chr6_4:85162844-85162863 Msa1001390:intron 45.0%
CTACAACAACTAGGCAGGAT+TGG + chr6_4:85162909-85162928 Msa1001390:intron 45.0%
GCACACCTTTGGACAAGTAA+TGG - chr6_4:85163332-85163351 None:intergenic 45.0%
TCCACTAGAAGACCCATGAT+AGG - chr6_4:85163438-85163457 None:intergenic 45.0%
!! GTAGGGTTGGTTAGTTGTGA+TGG + chr6_4:85163848-85163867 Msa1001390:CDS 45.0%
TTCTCATAACCCCACATGTG+CGG - chr6_4:85164022-85164041 None:intergenic 45.0%
TATGCCATCGATGTTCCATG+TGG + chr6_4:85164052-85164071 Msa1001390:CDS 45.0%
TTTGCCACATGGAACATCGA+TGG - chr6_4:85164059-85164078 None:intergenic 45.0%
TACACCCTGTATTTGCCACA+TGG - chr6_4:85164070-85164089 None:intergenic 45.0%
GAGCGGCAATAAATAGGATG+TGG - chr6_4:85164154-85164173 None:intergenic 45.0%
!!! ATGATTTTTTATTATTATTA+TGG - chr6_4:85163071-85163090 None:intergenic 5.0%
TCCATGTTCGTTTGCCATGG+AGG - chr6_4:85161762-85161781 None:intergenic 50.0%
ACACTAACACACTCTCCGCT+AGG + chr6_4:85162369-85162388 Msa1001390:intron 50.0%
CACTAACACACTCTCCGCTA+GGG + chr6_4:85162370-85162389 Msa1001390:intron 50.0%
! GTTTTTGCCCAGCTTTGCTC+AGG - chr6_4:85162595-85162614 None:intergenic 50.0%
GGGATGTTCATGAATGGGTG+TGG - chr6_4:85162740-85162759 None:intergenic 50.0%
GTGAATGCTAGGTCGTATCC+CGG - chr6_4:85162804-85162823 None:intergenic 50.0%
GCCTATCATGGGTCTTCTAG+TGG + chr6_4:85163434-85163453 Msa1001390:CDS 50.0%
TCACTGACAAGGCCAGCATA+GGG + chr6_4:85163741-85163760 Msa1001390:CDS 50.0%
CAAGCTGAGTATCCCTATGC+TGG - chr6_4:85163756-85163775 None:intergenic 50.0%
TCTCATAACCCCACATGTGC+GGG - chr6_4:85164021-85164040 None:intergenic 50.0%
AGCTAAGCAAGCAGCCTCCA+TGG + chr6_4:85161745-85161764 Msa1001390:exon 55.0%
GCCTCCATGGCAAACGAACA+TGG + chr6_4:85161758-85161777 Msa1001390:exon 55.0%
GATTCTCTATTCGACCCGGG+CGG - chr6_4:85162136-85162155 None:intergenic 55.0%
!! CAAAGGCTTTGGGTGATGCG+AGG - chr6_4:85162547-85162566 None:intergenic 55.0%
TTTGCCCAGCTTTGCTCAGG+AGG - chr6_4:85162592-85162611 None:intergenic 55.0%
TAGCCGGTCCCATTTCCAGA+TGG - chr6_4:85162850-85162869 None:intergenic 55.0%
GTCACTGACAAGGCCAGCAT+AGG + chr6_4:85163740-85163759 Msa1001390:CDS 55.0%
ACTGAGCAACCCGCACATGT+GGG + chr6_4:85164009-85164028 Msa1001390:CDS 55.0%
GGTGTGGGGGTTTCCACCTT+TGG - chr6_4:85162724-85162743 None:intergenic 60.0%
CACTGAGCAACCCGCACATG+TGG + chr6_4:85164008-85164027 Msa1001390:CDS 60.0%
CTGAGCAACCCGCACATGTG+GGG + chr6_4:85164010-85164029 Msa1001390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 85161679 85164457 85161679 ID=Msa1001390;Name=Msa1001390
chr6_4 mRNA 85161679 85164457 85161679 ID=Msa1001390-mRNA-1;Parent=Msa1001390;Name=Msa1001390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=85|1|1|1|1|1|2|214|451
chr6_4 exon 85161679 85162037 85161679 ID=Msa1001390-mRNA-1:exon:16624;Parent=Msa1001390-mRNA-1
chr6_4 exon 85163162 85164457 85163162 ID=Msa1001390-mRNA-1:exon:16625;Parent=Msa1001390-mRNA-1
chr6_4 five_prime_UTR 85161679 85161763 85161679 ID=Msa1001390-mRNA-1:five_prime_utr;Parent=Msa1001390-mRNA-1
chr6_4 CDS 85161764 85162037 85161764 ID=Msa1001390-mRNA-1:cds;Parent=Msa1001390-mRNA-1
chr6_4 CDS 85163162 85164243 85163162 ID=Msa1001390-mRNA-1:cds;Parent=Msa1001390-mRNA-1
chr6_4 three_prime_UTR 85164244 85164457 85164244 ID=Msa1001390-mRNA-1:three_prime_utr;Parent=Msa1001390-mRNA-1
Gene Sequence

>Msa1001390

ATGGCAAACGAACATGGAATTGGGTTTGTGGAGGAAGTAAAATCTGTGTTTCATGGTAAGAGGGAAGAGTATGAAGAGTTTATAAAAGACATAAATGCTTTTAAGACCACCCTGATGAATGATCATCGAATCACCAGACTTCCAGTTCAAAATTTCAAAGAAAGGATGAATAAGGTACTTAAAGGGCGTAATCGTTTAATTTTGGGATTCAACGCCTACATGAAGCATCGTCGTATTACACTTCCAATTCGACAACGAGTTGGTCATAGGAATGGACAAAAAAAGAAGAAGGTAGAAGAGAACTGTCAACTTCCTTGGGATTTGCTTGACATCATTTTGAGGAATCTAGATTTTGATGACCTCTTTCAATTTGGTAGTGTATGCAAAAATTGGCGAGAATTTTATAAAATTTATTGGAGGAATTTCATGGCATCCGAAGAACCATTACTTGTCCAAAGGTGTGCTCTTGAGAAATCTTTCAACTTCTTCAACTTACCTCACGATAAAGTTTATCACTCAAAGATGATCAATAACTACTTCCGATTTGCCTATCATGGGTCTTCTAGTGGATATTTCATCATGACACGAAAAGATAATTCATTTATACTTATTAATCCATTTACAAGAAGAAAGATGCTAATCAATAACTCAGTCTTCAAAGTTGATTTCAAATTTTTTTCCTGCAAAGTCTTGCTTGCTTTTTCCAAAGGCTCAAAGGAATTTGTCTTGGTGGTTTCATGTAGAAATTCTGATAATTTGCATGTCTATCAATCTCGAAATCTTTGTTGGACTGCTTATTCGACACCACATAAGGTTGTTGACTTTGCTGTTTTAAATTATATCATATATGTTGTCACTGACAAGGCCAGCATAGGGATACTCAGCTTGAAATATGCAAATATAAATTTTTTAGAATTGAAGAGTACTCCTGGTGTAACTTCTACTTATTATTGGTCACATGTAGGGTTGGTTAGTTGTGATGGATATCTTTTAGTGCTTAATTTTATGTCAAAGGTAACGTATAACGTGTACAAGATAGACTTCTCTACCATGGATTATGTCAAGTTGGAATCTTTGGGTGACATTGCAATATTTTGTGTTCCGCCGAAAAGGTATTATGCACTGAGCAACCCGCACATGTGGGGTTATGAGAACAATTCTATCTATGCCATCGATGTTCCATGTGGCAAATACAGGGTGTATAAAGGAGATAACAAAAAAATGCCAGAATTCATTATTCCTGGTTTTAAACTTAGTGAACTTCCACATCCTATTTATTGCCGCTCAAAACAACGTTACATAGATTGGTGTTTTAGACATCTACAATATGAGGTGGATTATACTCTCGTTGAGTAG

Protein sequence

>Msa1001390

MANEHGIGFVEEVKSVFHGKREEYEEFIKDINAFKTTLMNDHRITRLPVQNFKERMNKVLKGRNRLILGFNAYMKHRRITLPIRQRVGHRNGQKKKKVEENCQLPWDLLDIILRNLDFDDLFQFGSVCKNWREFYKIYWRNFMASEEPLLVQRCALEKSFNFFNLPHDKVYHSKMINNYFRFAYHGSSSGYFIMTRKDNSFILINPFTRRKMLINNSVFKVDFKFFSCKVLLAFSKGSKEFVLVVSCRNSDNLHVYQSRNLCWTAYSTPHKVVDFAVLNYIIYVVTDKASIGILSLKYANINFLELKSTPGVTSTYYWSHVGLVSCDGYLLVLNFMSKVTYNVYKIDFSTMDYVKLESLGDIAIFCVPPKRYYALSNPHMWGYENNSIYAIDVPCGKYRVYKGDNKKMPEFIIPGFKLSELPHPIYCRSKQRYIDWCFRHLQYEVDYTLVE*