AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 142 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTAGTTAATGGATTT+TGG 0.112017 1_4:-60043808 None:intergenic
GATTTCAATGTCTCCGAAAT+TGG 0.127642 1_4:-60044988 None:intergenic
GATTGGGGAAAATTAGTTAA+TGG 0.230090 1_4:-60043815 None:intergenic
AGGATCAGCATGCCTGTTAC+AGG 0.285876 1_4:+60047567 Msa0174390:five_prime_UTR
AGATCCTGAGCCATTCATTT+TGG 0.291747 1_4:+60048750 Msa0174390:CDS
CTCGCCGGTAACTTCATTTC+CGG 0.297204 1_4:-60044115 None:intergenic
TACCAGGATATTGATCAAAT+AGG 0.319035 1_4:+60046669 Msa0174390:five_prime_UTR
TTGATGCCATTGAAGGGGTT+AGG 0.320295 1_4:-60043910 None:intergenic
TTGCAGGAGGGAGAGATAGA+TGG 0.331677 1_4:+60044625 Msa0174390:intron
AAACGCAGGAAAATTTGATT+TGG 0.341618 1_4:-60043766 None:intergenic
CAGAAGTAAAATCAACCTTT+TGG 0.345206 1_4:-60047509 None:intergenic
ACGCTTACGATAGTTGATTA+TGG 0.346865 1_4:+60044213 Msa0174390:five_prime_UTR
ATTTCCTGCTTCAGCTGGTC+TGG 0.348800 1_4:+60048891 Msa0174390:CDS
ATTTCAATGTCTCCGAAATT+GGG 0.352225 1_4:-60044987 None:intergenic
CGACAACAGCGACGACGATA+TGG 0.354188 1_4:+60043976 Msa0174390:five_prime_UTR
AGTGTTGATGTTTAACGATT+GGG 0.359843 1_4:-60043831 None:intergenic
GGAGTGTTAGCTTGATTGTT+AGG 0.363684 1_4:-60044965 None:intergenic
AAGCTAACACTCCCCAATTT+CGG 0.373763 1_4:+60044975 Msa0174390:five_prime_UTR
TCCTCTGCCCTCTGTGGGGC+AGG 0.375291 1_4:+60047902 Msa0174390:CDS
TTCTTCTTTGATGCCATTGA+AGG 0.378186 1_4:-60043917 None:intergenic
CTGCTGTCACACAGGAATAA+AGG 0.380075 1_4:-60048915 None:intergenic
GGTAGTGGTAGAGTTATGTT+TGG 0.384601 1_4:+60044646 Msa0174390:five_prime_UTR
TGTAACAGGCATGCTGATCC+TGG 0.390154 1_4:-60047565 None:intergenic
TGATGCCATTGAAGGGGTTA+GGG 0.393288 1_4:-60043909 None:intergenic
GGAGCACCAAGCACAATTCC+TGG 0.394854 1_4:-60047543 None:intergenic
GTAGTGGTAGAGTTATGTTT+GGG 0.398710 1_4:+60044647 Msa0174390:five_prime_UTR
TCCTCTGAGCATTTAACTTC+GGG 0.399431 1_4:-60045123 None:intergenic
AACTACAGGTGGTTTGCATT+TGG 0.399484 1_4:+60047715 Msa0174390:five_prime_UTR
AAGATCTAGTGAAAGGAGGT+TGG 0.401837 1_4:+60048722 Msa0174390:CDS
TCGCCGGTAACTTCATTTCC+GGG 0.402289 1_4:-60044114 None:intergenic
GTGATTTCTAAACCTGTAAC+AGG 0.404398 1_4:-60047579 None:intergenic
TCTCCAAGCTCTGCATCATC+AGG 0.407205 1_4:-60045042 None:intergenic
CGGCGTCATCTTGCTCCTCC+TGG 0.418490 1_4:-60044030 None:intergenic
AAGAAATTTCCTGCTTCAGC+TGG 0.420662 1_4:+60048886 Msa0174390:CDS
TTCCCGCTGGTTGATTGGTT+GGG 0.421989 1_4:+60048979 Msa0174390:three_prime_UTR
CAGCGGGAACAACTATTTCA+TGG 0.424196 1_4:-60048965 None:intergenic
GTCGCTGTTGTCGTTGTACA+TGG 0.428690 1_4:-60043966 None:intergenic
CTCCTCTGAGCATTTAACTT+CGG 0.432251 1_4:-60045124 None:intergenic
TTTCTGGAAGAGATGAAATT+CGG 0.434072 1_4:-60043863 None:intergenic
CTTTATTCCTGTGTGACAGC+AGG 0.435632 1_4:+60048916 Msa0174390:CDS
ACCAGGATATTGATCAAATA+GGG 0.451137 1_4:+60046670 Msa0174390:five_prime_UTR
ACAGCATGCAGTAAGAAGTC+AGG 0.452748 1_4:-60046642 None:intergenic
ATATGAGGCGAGAAAGTGAT+AGG 0.455219 1_4:+60047457 Msa0174390:five_prime_UTR
CAAAACCCTAACCCCTTCAA+TGG 0.456860 1_4:+60043904 Msa0174390:five_prime_UTR
GTTCCCGCTGGTTGATTGGT+TGG 0.461343 1_4:+60048978 Msa0174390:three_prime_UTR
CAGGATTCTGTATCTACAGC+AGG 0.461924 1_4:+60047921 Msa0174390:CDS
TAGAATGACCGTGCTGATCC+CGG 0.464581 1_4:+60044096 Msa0174390:five_prime_UTR
AAGTGTTGATGTTTAACGAT+TGG 0.465643 1_4:-60043832 None:intergenic
TCTTCTTTGATGCCATTGAA+GGG 0.466002 1_4:-60043916 None:intergenic
AAAATTCCTCTGCCCTCTGT+GGG 0.466045 1_4:+60047897 Msa0174390:CDS
GGTGGTTCTGCTGCAACTAC+AGG 0.474888 1_4:+60047701 Msa0174390:intron
AGACCTGATGATGCAGAGCT+TGG 0.477379 1_4:+60045039 Msa0174390:five_prime_UTR
ACCGGCGAAAACAATCTATT+CGG 0.477813 1_4:-60044147 None:intergenic
AGTTGTTCCCGCTGGTTGAT+TGG 0.481772 1_4:+60048974 Msa0174390:three_prime_UTR
TTGCTAGATAGAACATCATC+AGG 0.482498 1_4:+60044923 Msa0174390:five_prime_UTR
TTAATGCAGAAGTTCGCAAC+AGG 0.487042 1_4:+60046604 Msa0174390:five_prime_UTR
ACCCGTTGTTGCTCTTGCAC+CGG 0.489660 1_4:-60044165 None:intergenic
GGAAGATTTGACTGCCGATA+CGG 0.495294 1_4:+60044072 Msa0174390:five_prime_UTR
CATTTAACTTCGGGTGGAGG+AGG 0.495435 1_4:-60045114 None:intergenic
TACCATTGGTTACATGATGT+TGG 0.503613 1_4:-60044672 None:intergenic
ACAAAGCAGAAGCTGATATG+AGG 0.508051 1_4:+60047442 Msa0174390:intron
GAGCATTTAACTTCGGGTGG+AGG 0.509611 1_4:-60045117 None:intergenic
CGTCGCTGAACAAGCGGCGG+AGG 0.511380 1_4:+60044051 Msa0174390:five_prime_UTR
TAAATTTCTGGAGTATAAGA+AGG 0.512451 1_4:+60046569 Msa0174390:five_prime_UTR
AAAGATGTATTTGATCCTCA+TGG 0.513183 1_4:+60046705 Msa0174390:five_prime_UTR
AGAAGAAGACGTGAATCGCC+AGG 0.516902 1_4:+60044012 Msa0174390:five_prime_UTR
GTGTTGATGTTTAACGATTG+GGG 0.519587 1_4:-60043830 None:intergenic
AATCACATCGTCATTATTCA+CGG 0.520386 1_4:-60045016 None:intergenic
TATCAAACAGTGTTATAAGC+GGG 0.521026 1_4:+60048780 Msa0174390:CDS
GTGTTATCTGCTACTAATGC+TGG 0.522239 1_4:+60047957 Msa0174390:CDS
GAATTGTGCTTGGTGCTCCC+AGG 0.522243 1_4:+60047547 Msa0174390:five_prime_UTR
GCCGGTGCAAGAGCAACAAC+GGG 0.522968 1_4:+60044164 Msa0174390:five_prime_UTR
CGCCGGTGCAAGAGCAACAA+CGG 0.525944 1_4:+60044163 Msa0174390:five_prime_UTR
GGCATCAAAGAAGAAACAAT+CGG 0.534768 1_4:+60043925 Msa0174390:five_prime_UTR
ACCCTATTTGATCAATATCC+TGG 0.535620 1_4:-60046671 None:intergenic
GCATAAATCTGAAGATCCAT+TGG 0.537067 1_4:+60045080 Msa0174390:five_prime_UTR
GATCCCGGAAATGAAGTTAC+CGG 0.539683 1_4:+60044111 Msa0174390:five_prime_UTR
GTCTTTGAGTTTGTTGTACG+AGG 0.539915 1_4:+60049070 Msa0174390:three_prime_UTR
CTTCTTTGATGCCATTGAAG+GGG 0.540176 1_4:-60043915 None:intergenic
AGAGAAGATCTAGTGAAAGG+AGG 0.544423 1_4:+60048718 Msa0174390:CDS
AGGACCAGACCAGCTGAAGC+AGG 0.545059 1_4:-60048895 None:intergenic
CTCCGCCGCTTGTTCAGCGA+CGG 0.547266 1_4:-60044050 None:intergenic
GGAGGAAGAAATTTATCCAA+TGG 0.548886 1_4:-60045096 None:intergenic
TTTCTGGAGTATAAGAAGGC+AGG 0.549624 1_4:+60046573 Msa0174390:five_prime_UTR
GAAAATTCCTCTGCCCTCTG+TGG 0.551062 1_4:+60047896 Msa0174390:CDS
TCTGAGCATTTAACTTCGGG+TGG 0.551073 1_4:-60045120 None:intergenic
ATACAACAGACCAAAATGAA+TGG 0.551605 1_4:-60048760 None:intergenic
GAAGAAAGCACAGAACCAAA+AGG 0.553830 1_4:+60047494 Msa0174390:five_prime_UTR
CATGAAATAGTTGTTCCCGC+TGG 0.555488 1_4:+60048966 Msa0174390:three_prime_UTR
ACTGCATGCTGTGAGGTACC+AGG 0.556776 1_4:+60046653 Msa0174390:five_prime_UTR
GGAAATGAAGTTACCGGCGA+GGG 0.557957 1_4:+60044117 Msa0174390:five_prime_UTR
TCCTGCCCCACAGAGGGCAG+AGG 0.560130 1_4:-60047903 None:intergenic
AAGTAGCAATGTCACCTGAC+CGG 0.561859 1_4:+60044244 Msa0174390:five_prime_UTR
AACCCAACCAATCAACCAGC+GGG 0.566375 1_4:-60048981 None:intergenic
GCTGATTCTATTAATCGAGA+TGG 0.567276 1_4:+60047749 Msa0174390:exon
CAGACCAAAATGAATGGCTC+AGG 0.567736 1_4:-60048754 None:intergenic
CACGGTCATTCTATCCGTAT+CGG 0.568376 1_4:-60044086 None:intergenic
GTAACAGGCATGCTGATCCT+GGG 0.568611 1_4:-60047564 None:intergenic
GAGGGAGAGATAGATGGTAG+TGG 0.568695 1_4:+60044631 Msa0174390:five_prime_UTR
TTTCAATGTCTCCGAAATTG+GGG 0.573064 1_4:-60044986 None:intergenic
CGATTAATAGAATCAGCTGT+AGG 0.576341 1_4:-60047743 None:intergenic
GGTTCTGCTGCAACTACAGG+TGG 0.576883 1_4:+60047704 Msa0174390:five_prime_UTR
CATAAATCCTGCTGTCACAC+AGG 0.580263 1_4:-60048923 None:intergenic
TCTGCTACTAATGCTGGCAG+TGG 0.582850 1_4:+60047963 Msa0174390:CDS
AGCGGGAACAACTATTTCAT+GGG 0.585351 1_4:-60048964 None:intergenic
GCAGTAAGAAGTCAGGGTTT+CGG 0.587267 1_4:-60046635 None:intergenic
AGGAGAGAAGATCTAGTGAA+AGG 0.588994 1_4:+60048715 Msa0174390:CDS
ACAGAATCCTGCCCCACAGA+GGG 0.590054 1_4:-60047909 None:intergenic
CAGCATGCAGTAAGAAGTCA+GGG 0.593688 1_4:-60046641 None:intergenic
ACACAACCAGGAATTGTGCT+TGG 0.599473 1_4:+60047537 Msa0174390:five_prime_UTR
GGTGCAAGAGCAACAACGGG+TGG 0.600004 1_4:+60044167 Msa0174390:five_prime_UTR
ATCAAACAGTGTTATAAGCG+GGG 0.607271 1_4:+60048781 Msa0174390:CDS
GAAGAGATGAAATTCGGTGA+GGG 0.609024 1_4:-60043857 None:intergenic
TGACGCCGTCGCTGAACAAG+CGG 0.612156 1_4:+60044045 Msa0174390:five_prime_UTR
GACCAACATCATGTAACCAA+TGG 0.613962 1_4:+60044670 Msa0174390:five_prime_UTR
AGGATTCTGTATCTACAGCA+GGG 0.614180 1_4:+60047922 Msa0174390:CDS
CGCCGTCGCTGAACAAGCGG+CGG 0.615904 1_4:+60044048 Msa0174390:five_prime_UTR
TCTTTGAGTTTGTTGTACGA+GGG 0.616155 1_4:+60049071 Msa0174390:three_prime_UTR
TTAATAGAATCAGCTGTAGG+AGG 0.622006 1_4:-60047740 None:intergenic
TCAAAGAAGAAACAATCGGA+AGG 0.625279 1_4:+60043929 Msa0174390:five_prime_UTR
TGCAGAAGTTCGCAACAGGA+AGG 0.625826 1_4:+60046608 Msa0174390:five_prime_UTR
AATGACAGGTGGATGGTGAT+CGG 0.628132 1_4:+60047874 Msa0174390:intron
AAACCCAACCAATCAACCAG+CGG 0.649693 1_4:-60048982 None:intergenic
ATTCGGAGTAAAACCCTCGC+CGG 0.650709 1_4:-60044130 None:intergenic
CTTCATTTCCGGGATCAGCA+CGG 0.652286 1_4:-60044104 None:intergenic
TCAAACAGTGTTATAAGCGG+GGG 0.653381 1_4:+60048782 Msa0174390:CDS
CGGAAATGAAGTTACCGGCG+AGG 0.662317 1_4:+60044116 Msa0174390:five_prime_UTR
ATAATCAACTATCGTAAGCG+TGG 0.663759 1_4:-60044211 None:intergenic
AAATTCCTCTGCCCTCTGTG+GGG 0.665822 1_4:+60047898 Msa0174390:CDS
TAGTGGTAGAGTTATGTTTG+GGG 0.667952 1_4:+60044648 Msa0174390:five_prime_UTR
ACTTCTTACTGCATGCTGTG+AGG 0.672975 1_4:+60046646 Msa0174390:five_prime_UTR
TCTAGTGAATGACAGGTGGA+TGG 0.676721 1_4:+60047867 Msa0174390:intron
GTATCAAACAGTGTTATAAG+CGG 0.679287 1_4:+60048779 Msa0174390:CDS
ATGAAAATAGGAGAAAACGC+AGG 0.681830 1_4:-60043780 None:intergenic
GGAAGAGATGAAATTCGGTG+AGG 0.681935 1_4:-60043858 None:intergenic
TAGCAATGTCACCTGACCGG+AGG 0.693440 1_4:+60044247 Msa0174390:five_prime_UTR
GGATTCTGTATCTACAGCAG+GGG 0.695787 1_4:+60047923 Msa0174390:CDS
TACAGAATCCTGCCCCACAG+AGG 0.701178 1_4:-60047910 None:intergenic
ACCCGAAGTTAAATGCTCAG+AGG 0.706953 1_4:+60045122 Msa0174390:five_prime_UTR
AGAAGACGTGAATCGCCAGG+AGG 0.711297 1_4:+60044015 Msa0174390:five_prime_UTR
TCACTTGAATCATATCCATG+AGG 0.732824 1_4:-60046720 None:intergenic
CAAACTCAAAGACAATACAG+TGG 0.753185 1_4:-60049060 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTTATCAAATTCAT+TGG - chr1_4:60045285-60045304 None:intergenic 15.0%
!! ATTTGATAAAAAAGAAACTT+TGG + chr1_4:60045289-60045308 Msa0174390:intron 15.0%
!! GAGAAAAATAAATAAATTTC+TGG + chr1_4:60046557-60046576 Msa0174390:intron 15.0%
!! ACAGAATAAAAAATCAAAAT+GGG + chr1_4:60047775-60047794 Msa0174390:CDS 15.0%
!! TTCTTTAATTAAATGATAAC+AGG - chr1_4:60048136-60048155 None:intergenic 15.0%
!!! TAAAAAGCATTATTTAACAT+AGG - chr1_4:60048319-60048338 None:intergenic 15.0%
!!! TTTTTGCTTGTTTATTATTT+CGG + chr1_4:60048826-60048845 Msa0174390:CDS 15.0%
!!! GAAAATTAGTTAATGGATTT+TGG - chr1_4:60043811-60043830 None:intergenic 20.0%
!!! GTTTTGAAATTTGTTGAATT+GGG - chr1_4:60043890-60043909 None:intergenic 20.0%
!! AAAAGTAAGTTAGTATGAAA+TGG + chr1_4:60044356-60044375 Msa0174390:intron 20.0%
!!! TTCAAGTTAGAATCAAATTT+TGG + chr1_4:60044453-60044472 Msa0174390:intron 20.0%
!!! AAAATTGATTTTGACATGTA+TGG - chr1_4:60044507-60044526 None:intergenic 20.0%
!! TTTAATCTGTGACAAATATA+TGG + chr1_4:60044764-60044783 Msa0174390:intron 20.0%
!!! ACTTTTTCTAAACAAAACAA+TGG - chr1_4:60044803-60044822 None:intergenic 20.0%
!! TTAATCTTATATTTCAGCTT+AGG - chr1_4:60045508-60045527 None:intergenic 20.0%
!!! CATAAATTTTATTTATCGAG+TGG - chr1_4:60045746-60045765 None:intergenic 20.0%
!!! AGTTTTATTATGTTGAAACT+TGG + chr1_4:60045887-60045906 Msa0174390:intron 20.0%
!! ATACAATAATCTACATAATG+TGG - chr1_4:60045920-60045939 None:intergenic 20.0%
!! TATGTAGATAAAGAATACTA+AGG + chr1_4:60046005-60046024 Msa0174390:intron 20.0%
!! ATGTAGATAAAGAATACTAA+GGG + chr1_4:60046006-60046025 Msa0174390:intron 20.0%
!! TAAAGATTTATGTTCTATGT+AGG + chr1_4:60046412-60046431 Msa0174390:intron 20.0%
!! AAAGATTTATGTTCTATGTA+GGG + chr1_4:60046413-60046432 Msa0174390:intron 20.0%
!! ACAAAATTTGTCAAAAATGA+GGG - chr1_4:60047233-60047252 None:intergenic 20.0%
!! AACAAAATTTGTCAAAAATG+AGG - chr1_4:60047234-60047253 None:intergenic 20.0%
!!! TCATTTTTGACAAATTTTGT+TGG + chr1_4:60047233-60047252 Msa0174390:intron 20.0%
!! AATAATAAAGTAGTTGAGAT+TGG - chr1_4:60047322-60047341 None:intergenic 20.0%
!! GACAGAATAAAAAATCAAAA+TGG + chr1_4:60047774-60047793 Msa0174390:CDS 20.0%
!! TAAAAAATCAAAATGGGATA+AGG + chr1_4:60047781-60047800 Msa0174390:CDS 20.0%
!!! TTCTATCTTTCTTTTGATTT+TGG + chr1_4:60048036-60048055 Msa0174390:intron 20.0%
!! TTAAATAGTTTCATTTCTCT+GGG + chr1_4:60048256-60048275 Msa0174390:intron 20.0%
!!! GTATCAACATTTAATTTTAG+TGG - chr1_4:60048650-60048669 None:intergenic 20.0%
!!! CAAGCAATGATATTTTTATA+CGG - chr1_4:60049019-60049038 None:intergenic 20.0%
!!! ATTTTGGAGAGAATGAAAAT+AGG - chr1_4:60043795-60043814 None:intergenic 25.0%
!!! GGTTTTGAAATTTGTTGAAT+TGG - chr1_4:60043891-60043910 None:intergenic 25.0%
! GAAAAAAAAAAAACTACCTC+CGG - chr1_4:60044266-60044285 None:intergenic 25.0%
!!! TTTTTTTTTTCCCTTTCTCT+TGG + chr1_4:60044275-60044294 Msa0174390:intron 25.0%
! AGTATGAAATGGTATATGTT+TGG + chr1_4:60044367-60044386 Msa0174390:intron 25.0%
!! AAGTTAGAATCAAATTTTGG+AGG + chr1_4:60044456-60044475 Msa0174390:intron 25.0%
! AATCTAACTAAACCTATGTT+TGG - chr1_4:60044569-60044588 None:intergenic 25.0%
! TAGTTAGATTATACACTGAA+AGG + chr1_4:60044579-60044598 Msa0174390:intron 25.0%
! ATTATACACTGAAAGGTAAT+GGG + chr1_4:60044586-60044605 Msa0174390:intron 25.0%
! AAATATATGGAAACTTCCAA+AGG + chr1_4:60044777-60044796 Msa0174390:intron 25.0%
! CACGAAAAAATTGTAACAAA+CGG + chr1_4:60044831-60044850 Msa0174390:intron 25.0%
! ACGAAAAAATTGTAACAAAC+GGG + chr1_4:60044832-60044851 Msa0174390:intron 25.0%
! TACAAGTAAGTTCTCTTTAA+TGG + chr1_4:60045148-60045167 Msa0174390:intron 25.0%
!!! GTTTATATTGCCTTTGTTTT+GGG + chr1_4:60045482-60045501 Msa0174390:intron 25.0%
!! CTAACACCAATTTTTACATA+GGG - chr1_4:60045719-60045738 None:intergenic 25.0%
!! ACTAACACCAATTTTTACAT+AGG - chr1_4:60045720-60045739 None:intergenic 25.0%
! GGAGAAAAATAAGTGTTTAA+TGG - chr1_4:60045957-60045976 None:intergenic 25.0%
! TGTAGATAAAGAATACTAAG+GGG + chr1_4:60046007-60046026 Msa0174390:intron 25.0%
! ATAAATCCTATCATATCACT+AGG - chr1_4:60046319-60046338 None:intergenic 25.0%
! AAGATTTATGTTCTATGTAG+GGG + chr1_4:60046414-60046433 Msa0174390:intron 25.0%
!! GTAAATTGAATCTTTTGCTT+TGG + chr1_4:60046458-60046477 Msa0174390:intron 25.0%
! GATATCATGAAAATTGACAA+GGG - chr1_4:60046518-60046537 None:intergenic 25.0%
! CTCTGCAATAATCAATTTAA+AGG - chr1_4:60046540-60046559 None:intergenic 25.0%
!!! TAAATTTCTGGAGTATAAGA+AGG + chr1_4:60046569-60046588 Msa0174390:five_prime_UTR 25.0%
!! AGTGACTTTTATGATCAAAT+AGG + chr1_4:60046738-60046757 Msa0174390:five_prime_UTR 25.0%
! GGAAAACAAAATTCTAATAC+TGG - chr1_4:60047016-60047035 None:intergenic 25.0%
! CAAAATTTGTCAAAAATGAG+GGG - chr1_4:60047232-60047251 None:intergenic 25.0%
!! AATTAATGTTAGCGTTGTTT+TGG + chr1_4:60047369-60047388 Msa0174390:intron 25.0%
!!! AAAAGGTTGATTTTACTTCT+GGG + chr1_4:60047511-60047530 Msa0174390:five_prime_UTR 25.0%
!!! TTTATGTTGACTTTTTGCAT+AGG + chr1_4:60047680-60047699 Msa0174390:intron 25.0%
! GTTAAATAGTTTCATTTCTC+TGG + chr1_4:60048255-60048274 Msa0174390:intron 25.0%
!!! GTATTTTTGCTGTAATTGTA+TGG + chr1_4:60048352-60048371 Msa0174390:intron 25.0%
!! TTTACAAACTCTGTTTTGTA+TGG + chr1_4:60048499-60048518 Msa0174390:intron 25.0%
!!! TAGATTTTGAAATCAAACTG+AGG - chr1_4:60048562-60048581 None:intergenic 25.0%
! CATAACATTGACAATAAACA+AGG - chr1_4:60048599-60048618 None:intergenic 25.0%
AAGCAGAAAAAGAATGAAGA+CGG - chr1_4:60043727-60043746 None:intergenic 30.0%
AAACGCAGGAAAATTTGATT+TGG - chr1_4:60043769-60043788 None:intergenic 30.0%
GATTGGGGAAAATTAGTTAA+TGG - chr1_4:60043818-60043837 None:intergenic 30.0%
!! AGTGTTGATGTTTAACGATT+GGG - chr1_4:60043834-60043853 None:intergenic 30.0%
!! AAGTGTTGATGTTTAACGAT+TGG - chr1_4:60043835-60043854 None:intergenic 30.0%
! TTTCTGGAAGAGATGAAATT+CGG - chr1_4:60043866-60043885 None:intergenic 30.0%
!! ATTTGTTGAATTGGGTTTTC+TGG - chr1_4:60043882-60043901 None:intergenic 30.0%
GATTATACACTGAAAGGTAA+TGG + chr1_4:60044585-60044604 Msa0174390:intron 30.0%
CTGAAAATTGAACTTACCAT+TGG - chr1_4:60044689-60044708 None:intergenic 30.0%
CTGCAGAAAAATTTCATGTT+GGG - chr1_4:60044898-60044917 None:intergenic 30.0%
ATTTCAATGTCTCCGAAATT+GGG - chr1_4:60044990-60045009 None:intergenic 30.0%
AATCACATCGTCATTATTCA+CGG - chr1_4:60045019-60045038 None:intergenic 30.0%
!! CTATAGTTGATGAATGCATT+TGG + chr1_4:60045179-60045198 Msa0174390:intron 30.0%
AGAATATTGAATGCTTGATC+AGG - chr1_4:60045256-60045275 None:intergenic 30.0%
AAAGAAACTTTGGCAATTAG+AGG + chr1_4:60045299-60045318 Msa0174390:intron 30.0%
AAGAAACTTTGGCAATTAGA+GGG + chr1_4:60045300-60045319 Msa0174390:intron 30.0%
ATCTTATTACCTTTCTTTGC+TGG + chr1_4:60045343-60045362 Msa0174390:intron 30.0%
! CTGTAATTTTCACATTAGAG+TGG + chr1_4:60045460-60045479 Msa0174390:intron 30.0%
!! GGTTTATATTGCCTTTGTTT+TGG + chr1_4:60045481-60045500 Msa0174390:intron 30.0%
CTCGGTGAAAAATAAACATT+GGG - chr1_4:60045626-60045645 None:intergenic 30.0%
! ACTCGGTGAAAAATAAACAT+TGG - chr1_4:60045627-60045646 None:intergenic 30.0%
! TTTTTCACCGAGTAAAAAGA+TGG + chr1_4:60045634-60045653 Msa0174390:intron 30.0%
! TTTTCACCGAGTAAAAAGAT+GGG + chr1_4:60045635-60045654 Msa0174390:intron 30.0%
TCTTTCCGATTATTAGCAAA+AGG + chr1_4:60045815-60045834 Msa0174390:intron 30.0%
CTTTCCGATTATTAGCAAAA+GGG + chr1_4:60045816-60045835 Msa0174390:intron 30.0%
TTTCCGATTATTAGCAAAAG+GGG + chr1_4:60045817-60045836 Msa0174390:intron 30.0%
CAACATAATAAAACTTTGCC+TGG - chr1_4:60045882-60045901 None:intergenic 30.0%
ATTATGTTGAAACTTGGAAG+TGG + chr1_4:60045893-60045912 Msa0174390:intron 30.0%
AATGGTGAGTAAGTTATACA+AGG + chr1_4:60046069-60046088 Msa0174390:intron 30.0%
TAAGTTATACAAGGAACAAG+AGG + chr1_4:60046078-60046097 Msa0174390:intron 30.0%
AAGTTATACAAGGAACAAGA+GGG + chr1_4:60046079-60046098 Msa0174390:intron 30.0%
TATACTATAGAGAGTTAGTC+AGG + chr1_4:60046127-60046146 Msa0174390:intron 30.0%
AAGATCGAAGATTCAAATAC+TGG - chr1_4:60046250-60046269 None:intergenic 30.0%
ATCACTAGGTATTACATTTC+TGG - chr1_4:60046305-60046324 None:intergenic 30.0%
GTAATACCTAGTGATATGAT+AGG + chr1_4:60046310-60046329 Msa0174390:intron 30.0%
AGATTTATGTTCTATGTAGG+GGG + chr1_4:60046415-60046434 Msa0174390:intron 30.0%
! AATTGAATCTTTTGCTTTGG+TGG + chr1_4:60046461-60046480 Msa0174390:intron 30.0%
GGATATCATGAAAATTGACA+AGG - chr1_4:60046519-60046538 None:intergenic 30.0%
TACCAGGATATTGATCAAAT+AGG + chr1_4:60046669-60046688 Msa0174390:five_prime_UTR 30.0%
ACCAGGATATTGATCAAATA+GGG + chr1_4:60046670-60046689 Msa0174390:five_prime_UTR 30.0%
AAAGATGTATTTGATCCTCA+TGG + chr1_4:60046705-60046724 Msa0174390:five_prime_UTR 30.0%
TTAGATAAAAGATGGAGAGA+GGG - chr1_4:60046775-60046794 None:intergenic 30.0%
ACTAACGCTTAGATAAAAGA+TGG - chr1_4:60046783-60046802 None:intergenic 30.0%
! ATCTTTTATCTAAGCGTTAG+TGG + chr1_4:60046782-60046801 Msa0174390:intron 30.0%
TATACTTTAAATCAGCCTTC+AGG - chr1_4:60046965-60046984 None:intergenic 30.0%
!! ATACTTTGAGGTTATCATTC+AGG + chr1_4:60047046-60047065 Msa0174390:intron 30.0%
GAACTTGTGTTAGAGTAATT+AGG + chr1_4:60047081-60047100 Msa0174390:intron 30.0%
TAGAGTAATTAGGATAAGCT+TGG + chr1_4:60047091-60047110 Msa0174390:intron 30.0%
TGATAGTCAAAATAGTAGTC+TGG - chr1_4:60047135-60047154 None:intergenic 30.0%
GGAAAGTAGTGTAAAAACAA+CGG - chr1_4:60047395-60047414 None:intergenic 30.0%
!!! TTCTGCTTTGTTTTAGACAA+CGG - chr1_4:60047433-60047452 None:intergenic 30.0%
! CAGAAGTAAAATCAACCTTT+TGG - chr1_4:60047512-60047531 None:intergenic 30.0%
!! CAAAAGGTTGATTTTACTTC+TGG + chr1_4:60047510-60047529 Msa0174390:five_prime_UTR 30.0%
!! AAAGGTTGATTTTACTTCTG+GGG + chr1_4:60047512-60047531 Msa0174390:five_prime_UTR 30.0%
ACTAAATTCTAGTGAATGAC+AGG + chr1_4:60047860-60047879 Msa0174390:intron 30.0%
! CAGTTTGTAAGATTTGAGTT+TGG + chr1_4:60048068-60048087 Msa0174390:intron 30.0%
! TGTAAGATTTGAGTTTGGTT+TGG + chr1_4:60048073-60048092 Msa0174390:intron 30.0%
!! TTGGAGTATTGAATTGAGAA+TGG + chr1_4:60048282-60048301 Msa0174390:intron 30.0%
!! TGGAGTATTGAATTGAGAAT+GGG + chr1_4:60048283-60048302 Msa0174390:intron 30.0%
GATTAGATGAAAGACTACAA+TGG - chr1_4:60048398-60048417 None:intergenic 30.0%
! AAAACTCTAAAAGAAGCACA+AGG - chr1_4:60048429-60048448 None:intergenic 30.0%
ATACAACAGACCAAAATGAA+TGG - chr1_4:60048763-60048782 None:intergenic 30.0%
GTATCAAACAGTGTTATAAG+CGG + chr1_4:60048779-60048798 Msa0174390:CDS 30.0%
TATCAAACAGTGTTATAAGC+GGG + chr1_4:60048780-60048799 Msa0174390:CDS 30.0%
ATGAAAATAGGAGAAAACGC+AGG - chr1_4:60043783-60043802 None:intergenic 35.0%
! GTGTTGATGTTTAACGATTG+GGG - chr1_4:60043833-60043852 None:intergenic 35.0%
TCTTCTTTGATGCCATTGAA+GGG - chr1_4:60043919-60043938 None:intergenic 35.0%
TTCTTCTTTGATGCCATTGA+AGG - chr1_4:60043920-60043939 None:intergenic 35.0%
GGCATCAAAGAAGAAACAAT+CGG + chr1_4:60043925-60043944 Msa0174390:five_prime_UTR 35.0%
TCAAAGAAGAAACAATCGGA+AGG + chr1_4:60043929-60043948 Msa0174390:five_prime_UTR 35.0%
ATAATCAACTATCGTAAGCG+TGG - chr1_4:60044214-60044233 None:intergenic 35.0%
ACGCTTACGATAGTTGATTA+TGG + chr1_4:60044213-60044232 Msa0174390:five_prime_UTR 35.0%
TACACCTCTTGAATCAGTTA+TGG + chr1_4:60044526-60044545 Msa0174390:intron 35.0%
!!! TGTTAGTTGGTTTTTGTTGC+AGG + chr1_4:60044609-60044628 Msa0174390:intron 35.0%
GTAGTGGTAGAGTTATGTTT+GGG + chr1_4:60044647-60044666 Msa0174390:five_prime_UTR 35.0%
TAGTGGTAGAGTTATGTTTG+GGG + chr1_4:60044648-60044667 Msa0174390:five_prime_UTR 35.0%
! TACCATTGGTTACATGATGT+TGG - chr1_4:60044675-60044694 None:intergenic 35.0%
CTAAACAAAACAATGGCCTT+TGG - chr1_4:60044796-60044815 None:intergenic 35.0%
ATTGTAACAAACGGGATCTT+AGG + chr1_4:60044840-60044859 Msa0174390:intron 35.0%
CCTGCAGAAAAATTTCATGT+TGG - chr1_4:60044899-60044918 None:intergenic 35.0%
! CCAACATGAAATTTTTCTGC+AGG + chr1_4:60044896-60044915 Msa0174390:intron 35.0%
TTGCTAGATAGAACATCATC+AGG + chr1_4:60044923-60044942 Msa0174390:five_prime_UTR 35.0%
TTTCAATGTCTCCGAAATTG+GGG - chr1_4:60044989-60045008 None:intergenic 35.0%
GATTTCAATGTCTCCGAAAT+TGG - chr1_4:60044991-60045010 None:intergenic 35.0%
GCATAAATCTGAAGATCCAT+TGG + chr1_4:60045080-60045099 Msa0174390:five_prime_UTR 35.0%
GGAGGAAGAAATTTATCCAA+TGG - chr1_4:60045099-60045118 None:intergenic 35.0%
AGTTTAACTCAGCAATTGCA+TGG - chr1_4:60045220-60045239 None:intergenic 35.0%
ATGCAATTGCTGAGTTAAAC+TGG + chr1_4:60045219-60045238 Msa0174390:intron 35.0%
TCTATGCATTTCATGGAGAT+AGG + chr1_4:60045372-60045391 Msa0174390:intron 35.0%
AGGGTAAAGTAAAACAACAG+AGG - chr1_4:60045592-60045611 None:intergenic 35.0%
ACATTGGGATTCTACTATCA+GGG - chr1_4:60045611-60045630 None:intergenic 35.0%
AACATTGGGATTCTACTATC+AGG - chr1_4:60045612-60045631 None:intergenic 35.0%
! TTTCCACCCATCTTTTTACT+CGG - chr1_4:60045644-60045663 None:intergenic 35.0%
! TTGGTGCCCTATGTAAAAAT+TGG + chr1_4:60045710-60045729 Msa0174390:intron 35.0%
! CTTCCCCTTTTGCTAATAAT+CGG - chr1_4:60045823-60045842 None:intergenic 35.0%
TATTAGCAAAAGGGGAAGAA+AGG + chr1_4:60045825-60045844 Msa0174390:intron 35.0%
ACTACCATTGTTCAATAACC+AGG + chr1_4:60045861-60045880 Msa0174390:intron 35.0%
TTTGCCTGGTTATTGAACAA+TGG - chr1_4:60045868-60045887 None:intergenic 35.0%
ATAAAACTTCCAAGTAGCAG+AGG - chr1_4:60045982-60046001 None:intergenic 35.0%
AGTTATACAAGGAACAAGAG+GGG + chr1_4:60046080-60046099 Msa0174390:intron 35.0%
!!! CTTTTCCAGAGAAGTATTCT+CGG - chr1_4:60046156-60046175 None:intergenic 35.0%
! GAGAATACTTCTCTGGAAAA+GGG + chr1_4:60046155-60046174 Msa0174390:intron 35.0%
! ACAATCCAACTCTTTTTCCT+AGG + chr1_4:60046272-60046291 Msa0174390:intron 35.0%
ATATAATTGACCCCATCTAC+TGG + chr1_4:60046354-60046373 Msa0174390:intron 35.0%
ACCCTATTTGATCAATATCC+TGG - chr1_4:60046674-60046693 None:intergenic 35.0%
TCACTTGAATCATATCCATG+AGG - chr1_4:60046723-60046742 None:intergenic 35.0%
CTTAGATAAAAGATGGAGAG+AGG - chr1_4:60046776-60046795 None:intergenic 35.0%
ATCAATAGCATAACTCTCAG+TGG - chr1_4:60046924-60046943 None:intergenic 35.0%
! TTAAATCAGCCTTCAGGTTA+GGG - chr1_4:60046959-60046978 None:intergenic 35.0%
! TTTAAATCAGCCTTCAGGTT+AGG - chr1_4:60046960-60046979 None:intergenic 35.0%
! ATACTGGCATCGAAAATATG+AGG - chr1_4:60047000-60047019 None:intergenic 35.0%
CAAATTAGTAGATGCATGCA+AGG - chr1_4:60047264-60047283 None:intergenic 35.0%
!! AAGGTTGATTTTACTTCTGG+GGG + chr1_4:60047513-60047532 Msa0174390:five_prime_UTR 35.0%
GTGATTTCTAAACCTGTAAC+AGG - chr1_4:60047582-60047601 None:intergenic 35.0%
! CAGCACTGAACAAATAAACT+AGG - chr1_4:60047604-60047623 None:intergenic 35.0%
!!! ATGTTGACTTTTTGCATAGG+TGG + chr1_4:60047683-60047702 Msa0174390:intron 35.0%
TTAATAGAATCAGCTGTAGG+AGG - chr1_4:60047743-60047762 None:intergenic 35.0%
CGATTAATAGAATCAGCTGT+AGG - chr1_4:60047746-60047765 None:intergenic 35.0%
! GCTGATTCTATTAATCGAGA+TGG + chr1_4:60047749-60047768 Msa0174390:exon 35.0%
AAATTCTAGTGAATGACAGG+TGG + chr1_4:60047863-60047882 Msa0174390:intron 35.0%
AGAATGCAGAAAGAAGTTCA+AGG - chr1_4:60048020-60048039 None:intergenic 35.0%
!! GTTTCATTTCTCTGGGATAT+TGG + chr1_4:60048263-60048282 Msa0174390:intron 35.0%
!! AATGCTTTTTAGTGTAGCAG+TGG + chr1_4:60048328-60048347 Msa0174390:intron 35.0%
! TTTGCTGTAATTGTATGGCT+CGG + chr1_4:60048357-60048376 Msa0174390:intron 35.0%
CTACAATGGAACAATCACAT+TGG - chr1_4:60048384-60048403 None:intergenic 35.0%
! TCTGTTTTGTATGGAGAAGA+TGG + chr1_4:60048508-60048527 Msa0174390:intron 35.0%
GATACAATTACCACTGTTGT+CGG + chr1_4:60048665-60048684 Msa0174390:intron 35.0%
ATCAAACAGTGTTATAAGCG+GGG + chr1_4:60048781-60048800 Msa0174390:CDS 35.0%
CAAACTCAAAGACAATACAG+TGG - chr1_4:60049063-60049082 None:intergenic 35.0%
!! TCTTTGAGTTTGTTGTACGA+GGG + chr1_4:60049071-60049090 Msa0174390:three_prime_UTR 35.0%
! GAAGAGATGAAATTCGGTGA+GGG - chr1_4:60043860-60043879 None:intergenic 40.0%
CTTCTTTGATGCCATTGAAG+GGG - chr1_4:60043918-60043937 None:intergenic 40.0%
! TCCGAATAGATTGTTTTCGC+CGG + chr1_4:60044146-60044165 Msa0174390:five_prime_UTR 40.0%
ACCGGCGAAAACAATCTATT+CGG - chr1_4:60044150-60044169 None:intergenic 40.0%
AAAAAAAACTACCTCCGGTC+AGG - chr1_4:60044261-60044280 None:intergenic 40.0%
AGAGAATGCTCCAAGAGAAA+GGG - chr1_4:60044288-60044307 None:intergenic 40.0%
AAGAGAATGCTCCAAGAGAA+AGG - chr1_4:60044289-60044308 None:intergenic 40.0%
! TTCTCTTGGAGCATTCTCTT+TGG + chr1_4:60044289-60044308 Msa0174390:intron 40.0%
! GCAACCATAACTGATTCAAG+AGG - chr1_4:60044533-60044552 None:intergenic 40.0%
AGTTATGGTTGCTCCAAATG+TGG + chr1_4:60044541-60044560 Msa0174390:intron 40.0%
! CCTATGTTTGGTTCCACATT+TGG - chr1_4:60044557-60044576 None:intergenic 40.0%
CCAAATGTGGAACCAAACAT+AGG + chr1_4:60044554-60044573 Msa0174390:intron 40.0%
!! GAAAGGTAATGGGTGTTAGT+TGG + chr1_4:60044596-60044615 Msa0174390:intron 40.0%
!!! TAGTTGGTTTTTGTTGCAGG+AGG + chr1_4:60044612-60044631 Msa0174390:intron 40.0%
!!! AGTTGGTTTTTGTTGCAGGA+GGG + chr1_4:60044613-60044632 Msa0174390:intron 40.0%
! GGTAGTGGTAGAGTTATGTT+TGG + chr1_4:60044646-60044665 Msa0174390:five_prime_UTR 40.0%
GACCAACATCATGTAACCAA+TGG + chr1_4:60044670-60044689 Msa0174390:five_prime_UTR 40.0%
! GGAGTGTTAGCTTGATTGTT+AGG - chr1_4:60044968-60044987 None:intergenic 40.0%
AAGCTAACACTCCCCAATTT+CGG + chr1_4:60044975-60044994 Msa0174390:five_prime_UTR 40.0%
! TCCTCTGAGCATTTAACTTC+GGG - chr1_4:60045126-60045145 None:intergenic 40.0%
! CTCCTCTGAGCATTTAACTT+CGG - chr1_4:60045127-60045146 None:intergenic 40.0%
GTCAGCATCTATGCATTTCA+TGG + chr1_4:60045365-60045384 Msa0174390:intron 40.0%
CAGATTATTGTTGCTGAGAC+AGG - chr1_4:60045431-60045450 None:intergenic 40.0%
CTGTCTCAGCAACAATAATC+TGG + chr1_4:60045429-60045448 Msa0174390:intron 40.0%
! CCATTTTCTAATGCTGAGAG+CGG + chr1_4:60045680-60045699 Msa0174390:intron 40.0%
! CATTTTCTAATGCTGAGAGC+GGG + chr1_4:60045681-60045700 Msa0174390:intron 40.0%
! ATTTTCTAATGCTGAGAGCG+GGG + chr1_4:60045682-60045701 Msa0174390:intron 40.0%
AAGGGGAAGAAAGGAAAACA+AGG + chr1_4:60045834-60045853 Msa0174390:intron 40.0%
GGAGGAAAATCAGTGTCTAA+TGG + chr1_4:60046051-60046070 Msa0174390:intron 40.0%
GTTATACAAGGAACAAGAGG+GGG + chr1_4:60046081-60046100 Msa0174390:intron 40.0%
! CGAGAATACTTCTCTGGAAA+AGG + chr1_4:60046154-60046173 Msa0174390:intron 40.0%
TTATGTTCTATGTAGGGGGT+AGG + chr1_4:60046419-60046438 Msa0174390:intron 40.0%
!! TTTCTGGAGTATAAGAAGGC+AGG + chr1_4:60046573-60046592 Msa0174390:five_prime_UTR 40.0%
TTAATGCAGAAGTTCGCAAC+AGG + chr1_4:60046604-60046623 Msa0174390:five_prime_UTR 40.0%
GATGGAGAGAGGGAAAATTA+CGG - chr1_4:60046765-60046784 None:intergenic 40.0%
! TAAATCAGCCTTCAGGTTAG+GGG - chr1_4:60046958-60046977 None:intergenic 40.0%
! CCTCAAAGTATCTTGAGAAC+AGG - chr1_4:60047037-60047056 None:intergenic 40.0%
CCTGTTCTCAAGATACTTTG+AGG + chr1_4:60047034-60047053 Msa0174390:intron 40.0%
! TTTGAGGTTATCATTCAGGC+TGG + chr1_4:60047050-60047069 Msa0174390:intron 40.0%
TTGTCAAAAATGAGGGGAGA+GGG - chr1_4:60047226-60047245 None:intergenic 40.0%
TTTGTCAAAAATGAGGGGAG+AGG - chr1_4:60047227-60047246 None:intergenic 40.0%
CAACGGACAAAAGCAAATGA+GGG - chr1_4:60047416-60047435 None:intergenic 40.0%
ACAACGGACAAAAGCAAATG+AGG - chr1_4:60047417-60047436 None:intergenic 40.0%
ACAAAGCAGAAGCTGATATG+AGG + chr1_4:60047442-60047461 Msa0174390:intron 40.0%
ATATGAGGCGAGAAAGTGAT+AGG + chr1_4:60047457-60047476 Msa0174390:five_prime_UTR 40.0%
! GAAGAAAGCACAGAACCAAA+AGG + chr1_4:60047494-60047513 Msa0174390:five_prime_UTR 40.0%
! AACTACAGGTGGTTTGCATT+TGG + chr1_4:60047715-60047734 Msa0174390:five_prime_UTR 40.0%
AGGATTCTGTATCTACAGCA+GGG + chr1_4:60047922-60047941 Msa0174390:CDS 40.0%
GTGTTATCTGCTACTAATGC+TGG + chr1_4:60047957-60047976 Msa0174390:CDS 40.0%
TTGCTGTAATTGTATGGCTC+GGG + chr1_4:60048358-60048377 Msa0174390:intron 40.0%
AGGAGAGAAGATCTAGTGAA+AGG + chr1_4:60048715-60048734 Msa0174390:CDS 40.0%
AGAGAAGATCTAGTGAAAGG+AGG + chr1_4:60048718-60048737 Msa0174390:CDS 40.0%
AAGATCTAGTGAAAGGAGGT+TGG + chr1_4:60048722-60048741 Msa0174390:CDS 40.0%
! AGATCCTGAGCCATTCATTT+TGG + chr1_4:60048750-60048769 Msa0174390:CDS 40.0%
TCAAACAGTGTTATAAGCGG+GGG + chr1_4:60048782-60048801 Msa0174390:CDS 40.0%
AAGAAATTTCCTGCTTCAGC+TGG + chr1_4:60048886-60048905 Msa0174390:CDS 40.0%
AGCGGGAACAACTATTTCAT+GGG - chr1_4:60048967-60048986 None:intergenic 40.0%
!! GTCTTTGAGTTTGTTGTACG+AGG + chr1_4:60049070-60049089 Msa0174390:three_prime_UTR 40.0%
! GGAAGAGATGAAATTCGGTG+AGG - chr1_4:60043861-60043880 None:intergenic 45.0%
CAAAACCCTAACCCCTTCAA+TGG + chr1_4:60043904-60043923 Msa0174390:five_prime_UTR 45.0%
TGATGCCATTGAAGGGGTTA+GGG - chr1_4:60043912-60043931 None:intergenic 45.0%
TTGATGCCATTGAAGGGGTT+AGG - chr1_4:60043913-60043932 None:intergenic 45.0%
GGAAGATTTGACTGCCGATA+CGG + chr1_4:60044072-60044091 Msa0174390:five_prime_UTR 45.0%
CACGGTCATTCTATCCGTAT+CGG - chr1_4:60044089-60044108 None:intergenic 45.0%
GATCCCGGAAATGAAGTTAC+CGG + chr1_4:60044111-60044130 Msa0174390:five_prime_UTR 45.0%
AAGTAGCAATGTCACCTGAC+CGG + chr1_4:60044244-60044263 Msa0174390:five_prime_UTR 45.0%
! TCTGAGCATTTAACTTCGGG+TGG - chr1_4:60045123-60045142 None:intergenic 45.0%
ACCCGAAGTTAAATGCTCAG+AGG + chr1_4:60045122-60045141 Msa0174390:five_prime_UTR 45.0%
AGATGCTGACCAGCAAAGAA+AGG - chr1_4:60045355-60045374 None:intergenic 45.0%
TCAGCTTAGGCCCAAAACAA+AGG - chr1_4:60045495-60045514 None:intergenic 45.0%
TCACCGAGTAAAAAGATGGG+TGG + chr1_4:60045638-60045657 Msa0174390:intron 45.0%
CCGCTCTCAGCATTAGAAAA+TGG - chr1_4:60045683-60045702 None:intergenic 45.0%
TTTCTCCTACCTCTGCTACT+TGG + chr1_4:60045970-60045989 Msa0174390:intron 45.0%
AACTTCCAAGTAGCAGAGGT+AGG - chr1_4:60045978-60045997 None:intergenic 45.0%
GAATACTAAGGGGCTGAACT+AGG + chr1_4:60046017-60046036 Msa0174390:intron 45.0%
GGGAAGAGAGAGATCAATTC+AGG + chr1_4:60046101-60046120 Msa0174390:intron 45.0%
CCATGCCTAGGAAAAAGAGT+TGG - chr1_4:60046280-60046299 None:intergenic 45.0%
! CCAACTCTTTTTCCTAGGCA+TGG + chr1_4:60046277-60046296 Msa0174390:intron 45.0%
!! ACATTTCTGGTACCATGCCT+AGG - chr1_4:60046292-60046311 None:intergenic 45.0%
ATTGACCCCATCTACTGGAA+TGG + chr1_4:60046359-60046378 Msa0174390:intron 45.0%
TTGACCCCATCTACTGGAAT+GGG + chr1_4:60046360-60046379 Msa0174390:intron 45.0%
CTTTCCCATTCCAGTAGATG+GGG - chr1_4:60046367-60046386 None:intergenic 45.0%
GCTTTCCCATTCCAGTAGAT+GGG - chr1_4:60046368-60046387 None:intergenic 45.0%
TCTATGTAGGGGGTAGGAAT+AGG + chr1_4:60046425-60046444 Msa0174390:intron 45.0%
GCAGTAAGAAGTCAGGGTTT+CGG - chr1_4:60046638-60046657 None:intergenic 45.0%
CAGCATGCAGTAAGAAGTCA+GGG - chr1_4:60046644-60046663 None:intergenic 45.0%
ACAGCATGCAGTAAGAAGTC+AGG - chr1_4:60046645-60046664 None:intergenic 45.0%
ACTTCTTACTGCATGCTGTG+AGG + chr1_4:60046646-60046665 Msa0174390:five_prime_UTR 45.0%
!!! TGCTTTTTCCCCTAACCTGA+AGG + chr1_4:60046947-60046966 Msa0174390:intron 45.0%
! TGGCATCGAAAATATGAGGC+AGG - chr1_4:60046996-60047015 None:intergenic 45.0%
CACTATGTTAACGATGCCTC+TGG + chr1_4:60047187-60047206 Msa0174390:intron 45.0%
ACACAACCAGGAATTGTGCT+TGG + chr1_4:60047537-60047556 Msa0174390:five_prime_UTR 45.0%
TCTAGTGAATGACAGGTGGA+TGG + chr1_4:60047867-60047886 Msa0174390:intron 45.0%
AATGACAGGTGGATGGTGAT+CGG + chr1_4:60047874-60047893 Msa0174390:intron 45.0%
AAAATTCCTCTGCCCTCTGT+GGG + chr1_4:60047897-60047916 Msa0174390:CDS 45.0%
CAGGATTCTGTATCTACAGC+AGG + chr1_4:60047921-60047940 Msa0174390:CDS 45.0%
GGATTCTGTATCTACAGCAG+GGG + chr1_4:60047923-60047942 Msa0174390:CDS 45.0%
CTGACACGCAAATCACACAA+AGG - chr1_4:60048173-60048192 None:intergenic 45.0%
! AAAGAAGCACAAGGTGTGCA+AGG - chr1_4:60048420-60048439 None:intergenic 45.0%
AATTACCACTGTTGTCGGAC+AGG + chr1_4:60048670-60048689 Msa0174390:intron 45.0%
ACAAAAACGACGAGAAGCAG+AGG + chr1_4:60048695-60048714 Msa0174390:CDS 45.0%
CAGACCAAAATGAATGGCTC+AGG - chr1_4:60048757-60048776 None:intergenic 45.0%
CTGCTGTCACACAGGAATAA+AGG - chr1_4:60048918-60048937 None:intergenic 45.0%
CTTTATTCCTGTGTGACAGC+AGG + chr1_4:60048916-60048935 Msa0174390:CDS 45.0%
CATAAATCCTGCTGTCACAC+AGG - chr1_4:60048926-60048945 None:intergenic 45.0%
CAGCGGGAACAACTATTTCA+TGG - chr1_4:60048968-60048987 None:intergenic 45.0%
CATGAAATAGTTGTTCCCGC+TGG + chr1_4:60048966-60048985 Msa0174390:three_prime_UTR 45.0%
AAACCCAACCAATCAACCAG+CGG - chr1_4:60048985-60049004 None:intergenic 45.0%
!! TTGAATAAATAAATTAATTA+AGG - chr1_4:60046843-60046862 None:intergenic 5.0%
GTCGCTGTTGTCGTTGTACA+TGG - chr1_4:60043969-60043988 None:intergenic 50.0%
AGAAGAAGACGTGAATCGCC+AGG + chr1_4:60044012-60044031 Msa0174390:five_prime_UTR 50.0%
! TAGAATGACCGTGCTGATCC+CGG + chr1_4:60044096-60044115 Msa0174390:five_prime_UTR 50.0%
CTTCATTTCCGGGATCAGCA+CGG - chr1_4:60044107-60044126 None:intergenic 50.0%
TCGCCGGTAACTTCATTTCC+GGG - chr1_4:60044117-60044136 None:intergenic 50.0%
CTCGCCGGTAACTTCATTTC+CGG - chr1_4:60044118-60044137 None:intergenic 50.0%
GGAAATGAAGTTACCGGCGA+GGG + chr1_4:60044117-60044136 Msa0174390:five_prime_UTR 50.0%
ATTCGGAGTAAAACCCTCGC+CGG - chr1_4:60044133-60044152 None:intergenic 50.0%
TTGCAGGAGGGAGAGATAGA+TGG + chr1_4:60044625-60044644 Msa0174390:intron 50.0%
GAGGGAGAGATAGATGGTAG+TGG + chr1_4:60044631-60044650 Msa0174390:five_prime_UTR 50.0%
! AGACCTGATGATGCAGAGCT+TGG + chr1_4:60045039-60045058 Msa0174390:five_prime_UTR 50.0%
TCTCCAAGCTCTGCATCATC+AGG - chr1_4:60045045-60045064 None:intergenic 50.0%
! CATTTAACTTCGGGTGGAGG+AGG - chr1_4:60045117-60045136 None:intergenic 50.0%
! GAGCATTTAACTTCGGGTGG+AGG - chr1_4:60045120-60045139 None:intergenic 50.0%
CTGAACTAGGAGAGGTAGGT+AGG + chr1_4:60046030-60046049 Msa0174390:intron 50.0%
AACTAGGAGAGGTAGGTAGG+AGG + chr1_4:60046033-60046052 Msa0174390:intron 50.0%
GGTCACCGAGAATACTTCTC+TGG + chr1_4:60046148-60046167 Msa0174390:intron 50.0%
CGCTTTCCCATTCCAGTAGA+TGG - chr1_4:60046369-60046388 None:intergenic 50.0%
!! TACTGGAATGGGAAAGCGCT+CGG + chr1_4:60046371-60046390 Msa0174390:intron 50.0%
TGCAGAAGTTCGCAACAGGA+AGG + chr1_4:60046608-60046627 Msa0174390:five_prime_UTR 50.0%
GGGAGGAAAGCAAAATCCAG+AGG - chr1_4:60047206-60047225 None:intergenic 50.0%
TCAAAAATGAGGGGAGAGGG+AGG - chr1_4:60047223-60047242 None:intergenic 50.0%
GTAACAGGCATGCTGATCCT+GGG - chr1_4:60047567-60047586 None:intergenic 50.0%
TGTAACAGGCATGCTGATCC+TGG - chr1_4:60047568-60047587 None:intergenic 50.0%
AGGATCAGCATGCCTGTTAC+AGG + chr1_4:60047567-60047586 Msa0174390:five_prime_UTR 50.0%
GAAAATTCCTCTGCCCTCTG+TGG + chr1_4:60047896-60047915 Msa0174390:CDS 50.0%
AAATTCCTCTGCCCTCTGTG+GGG + chr1_4:60047898-60047917 Msa0174390:CDS 50.0%
TCTGCTACTAATGCTGGCAG+TGG + chr1_4:60047963-60047982 Msa0174390:CDS 50.0%
ATTTCCTGCTTCAGCTGGTC+TGG + chr1_4:60048891-60048910 Msa0174390:CDS 50.0%
! AGTTGTTCCCGCTGGTTGAT+TGG + chr1_4:60048974-60048993 Msa0174390:three_prime_UTR 50.0%
! TTCCCGCTGGTTGATTGGTT+GGG + chr1_4:60048979-60048998 Msa0174390:three_prime_UTR 50.0%
AACCCAACCAATCAACCAGC+GGG - chr1_4:60048984-60049003 None:intergenic 50.0%
CGACAACAGCGACGACGATA+TGG + chr1_4:60043976-60043995 Msa0174390:five_prime_UTR 55.0%
AGAAGACGTGAATCGCCAGG+AGG + chr1_4:60044015-60044034 Msa0174390:five_prime_UTR 55.0%
CGGAAATGAAGTTACCGGCG+AGG + chr1_4:60044116-60044135 Msa0174390:five_prime_UTR 55.0%
ACCCGTTGTTGCTCTTGCAC+CGG - chr1_4:60044168-60044187 None:intergenic 55.0%
TAGCAATGTCACCTGACCGG+AGG + chr1_4:60044247-60044266 Msa0174390:five_prime_UTR 55.0%
CTAAGGGGCTGAACTAGGAG+AGG + chr1_4:60046022-60046041 Msa0174390:intron 55.0%
! ACTGCATGCTGTGAGGTACC+AGG + chr1_4:60046653-60046672 Msa0174390:five_prime_UTR 55.0%
! ACTTCTGGGGGTACACAACC+AGG + chr1_4:60047525-60047544 Msa0174390:five_prime_UTR 55.0%
! GGAGCACCAAGCACAATTCC+TGG - chr1_4:60047546-60047565 None:intergenic 55.0%
!! GAATTGTGCTTGGTGCTCCC+AGG + chr1_4:60047547-60047566 Msa0174390:five_prime_UTR 55.0%
! GGTGGTTCTGCTGCAACTAC+AGG + chr1_4:60047701-60047720 Msa0174390:intron 55.0%
GGTTCTGCTGCAACTACAGG+TGG + chr1_4:60047704-60047723 Msa0174390:five_prime_UTR 55.0%
ACAGAATCCTGCCCCACAGA+GGG - chr1_4:60047912-60047931 None:intergenic 55.0%
TACAGAATCCTGCCCCACAG+AGG - chr1_4:60047913-60047932 None:intergenic 55.0%
TGTTGCCTGTCCGACAACAG+TGG - chr1_4:60048678-60048697 None:intergenic 55.0%
! GTTCCCGCTGGTTGATTGGT+TGG + chr1_4:60048978-60048997 Msa0174390:three_prime_UTR 55.0%
TGACGCCGTCGCTGAACAAG+CGG + chr1_4:60044045-60044064 Msa0174390:five_prime_UTR 60.0%
CGCCGGTGCAAGAGCAACAA+CGG + chr1_4:60044163-60044182 Msa0174390:five_prime_UTR 60.0%
GCCGGTGCAAGAGCAACAAC+GGG + chr1_4:60044164-60044183 Msa0174390:five_prime_UTR 60.0%
GGTGCAAGAGCAACAACGGG+TGG + chr1_4:60044167-60044186 Msa0174390:five_prime_UTR 60.0%
TGCTGAGAGCGGGGATGTCT+TGG + chr1_4:60045691-60045710 Msa0174390:intron 60.0%
GGGGCTGAACTAGGAGAGGT+AGG + chr1_4:60046026-60046045 Msa0174390:intron 60.0%
AGGACCAGACCAGCTGAAGC+AGG - chr1_4:60048898-60048917 None:intergenic 60.0%
CGGCGTCATCTTGCTCCTCC+TGG - chr1_4:60044033-60044052 None:intergenic 65.0%
CTCCGCCGCTTGTTCAGCGA+CGG - chr1_4:60044053-60044072 None:intergenic 65.0%
CGCCGTCGCTGAACAAGCGG+CGG + chr1_4:60044048-60044067 Msa0174390:five_prime_UTR 70.0%
CGTCGCTGAACAAGCGGCGG+AGG + chr1_4:60044051-60044070 Msa0174390:five_prime_UTR 70.0%
TCCTCTGCCCTCTGTGGGGC+AGG + chr1_4:60047902-60047921 Msa0174390:CDS 70.0%
TCCTGCCCCACAGAGGGCAG+AGG - chr1_4:60047906-60047925 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 60043711 60049141 60043711 ID=Msa0174390;Name=Msa0174390
chr1_4 mRNA 60043711 60049141 60043711 ID=Msa0174390-mRNA-1;Parent=Msa0174390;Name=Msa0174390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1260|1|1|1|0.71|0.75|8|184|139
chr1_4 exon 60043711 60044268 60043711 ID=Msa0174390-mRNA-1:exon:18842;Parent=Msa0174390-mRNA-1
chr1_4 exon 60044631 60044691 60044631 ID=Msa0174390-mRNA-1:exon:18843;Parent=Msa0174390-mRNA-1
chr1_4 exon 60044918 60045152 60044918 ID=Msa0174390-mRNA-1:exon:18844;Parent=Msa0174390-mRNA-1
chr1_4 exon 60046558 60046759 60046558 ID=Msa0174390-mRNA-1:exon:18845;Parent=Msa0174390-mRNA-1
chr1_4 exon 60047451 60047588 60047451 ID=Msa0174390-mRNA-1:exon:18846;Parent=Msa0174390-mRNA-1
chr1_4 exon 60047702 60047802 60047702 ID=Msa0174390-mRNA-1:exon:18847;Parent=Msa0174390-mRNA-1
chr1_4 exon 60047882 60048000 60047882 ID=Msa0174390-mRNA-1:exon:18848;Parent=Msa0174390-mRNA-1
chr1_4 exon 60048692 60049141 60048692 ID=Msa0174390-mRNA-1:exon:18849;Parent=Msa0174390-mRNA-1
chr1_4 five_prime_UTR 60043711 60044268 60043711 ID=Msa0174390-mRNA-1:five_prime_utr;Parent=Msa0174390-mRNA-1
chr1_4 five_prime_UTR 60044631 60044691 60044631 ID=Msa0174390-mRNA-1:five_prime_utr;Parent=Msa0174390-mRNA-1
chr1_4 five_prime_UTR 60044918 60045152 60044918 ID=Msa0174390-mRNA-1:five_prime_utr;Parent=Msa0174390-mRNA-1
chr1_4 five_prime_UTR 60046558 60046759 60046558 ID=Msa0174390-mRNA-1:five_prime_utr;Parent=Msa0174390-mRNA-1
chr1_4 five_prime_UTR 60047451 60047588 60047451 ID=Msa0174390-mRNA-1:five_prime_utr;Parent=Msa0174390-mRNA-1
chr1_4 five_prime_UTR 60047702 60047767 60047702 ID=Msa0174390-mRNA-1:five_prime_utr;Parent=Msa0174390-mRNA-1
chr1_4 CDS 60047768 60047802 60047768 ID=Msa0174390-mRNA-1:cds;Parent=Msa0174390-mRNA-1
chr1_4 CDS 60047882 60048000 60047882 ID=Msa0174390-mRNA-1:cds;Parent=Msa0174390-mRNA-1
chr1_4 CDS 60048692 60048957 60048692 ID=Msa0174390-mRNA-1:cds;Parent=Msa0174390-mRNA-1
chr1_4 three_prime_UTR 60048958 60049141 60048958 ID=Msa0174390-mRNA-1:three_prime_utr;Parent=Msa0174390-mRNA-1
Gene Sequence

>Msa0174390

ATGGTAGACAGAATAAAAAATCAAAATGGGATAAGGTGGATGGTGATCGGAAAATTCCTCTGCCCTCTGTGGGGCAGGATTCTGTATCTACAGCAGGGGCTCATGCAGCAGTGTTATCTGCTACTAATGCTGGCAGTGGATACATGCTATTTGCGCAACAAAAACGACGAGAAGCAGAGGAGAGAAGATCTAGTGAAAGGAGGTTGGAGAGAAGATCCTGAGCCATTCATTTTGGTCTGTTGTATCAAACAGTGTTATAAGCGGGGGTTGAGATTTTGCTGCGTTACATTTTTGCTTGTTTATTATTTCGGCAACGCTAAGATACACTGTATATTCTCAAAAAATGAAAAGAAATTTCCTGCTTCAGCTGGTCTGGTCCTTTATTCCTGTGTGACAGCAGGATTTATGATTTATTTATAA

Protein sequence

>Msa0174390

MVDRIKNQNGIRWMVIGKFLCPLWGRILYLQQGLMQQCYLLLMLAVDTCYLRNKNDEKQRREDLVKGGWREDPEPFILVCCIKQCYKRGLRFCCVTFLLVYYFGNAKIHCIFSKNEKKFPASAGLVLYSCVTAGFMIYL*