AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030300 MtrunA17_Chr1g0187991 76.338 355 24 5 1 299 1 351 3.91e-156 445
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030300 AT1G04230.1 44.558 294 92 8 1 229 1 288 7.38e-50 171
Msa0030300 AT1G04230.2 44.558 294 91 9 1 229 1 287 6.41e-48 166
Msa0030300 AT5G43720.1 45.946 296 90 9 1 231 1 291 1.81e-44 157

Find 119 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAATTCCAATTTGTTTA+TGG 0.071395 1_1:-56445451 Msa0030300:three_prime_UTR
ATCTCTGTTTAGATGAATTT+TGG 0.177579 1_1:+56446922 None:intergenic
AGGAACATATTTCTCATTCT+TGG 0.273222 1_1:+56448448 None:intergenic
TGCAGGAATGATGGATAAAC+TGG 0.294568 1_1:-56445703 Msa0030300:intron
TATTATTGTATTACCAGATA+TGG 0.294749 1_1:-56445393 Msa0030300:three_prime_UTR
CAGTGAGGATGACGGTCTTC+TGG 0.295263 1_1:-56447385 Msa0030300:CDS
AACGGGTGGTTTGAATTTCT+TGG 0.296653 1_1:+56450103 None:intergenic
GAGCAGGCTTCTAGTGCTTC+TGG 0.304491 1_1:-56447177 Msa0030300:CDS
GTTGTTGTCCATAAACAAAT+TGG 0.312485 1_1:+56445443 None:intergenic
TGCGTTCGGCGGATCGGATT+TGG 0.330713 1_1:+56450069 None:intergenic
AGAAGCACAGGTGCAGAAAC+TGG 0.342086 1_1:-56449942 Msa0030300:CDS
TGTAAGATTGATTCATTTGA+AGG 0.344448 1_1:-56445232 Msa0030300:three_prime_UTR
CGTTCAAAACCTTCTTCAAT+AGG 0.346677 1_1:+56445342 None:intergenic
CAAACAAGTTGTCAAGGTTT+GGG 0.346944 1_1:-56446953 Msa0030300:CDS
TCAAACAAGTTGTCAAGGTT+TGG 0.348252 1_1:-56446954 Msa0030300:CDS
GAGCTGGTCCCTGCTCTTGA+AGG 0.354743 1_1:+56446792 None:intergenic
AAATATGTTCCTTTATTTAG+TGG 0.364448 1_1:-56448437 Msa0030300:CDS
GGAACATATTTCTCATTCTT+GGG 0.369244 1_1:+56448449 None:intergenic
CAGTTTATTTGTTCATCAAA+TGG 0.375593 1_1:-56445796 Msa0030300:CDS
GTAAGGGAACCCTCAAGATC+AGG 0.387740 1_1:-56446843 Msa0030300:CDS
CATATATGTACTGACTTGTT+AGG 0.388670 1_1:-56445551 Msa0030300:three_prime_UTR
AGGAAATTACACACCATATC+TGG 0.393462 1_1:+56445380 None:intergenic
GTAAGGGAACCCTCAAGATC+AGG 0.395899 1_1:-56446759 Msa0030300:CDS
TTATCTGTGGCTGCTGCAAC+TGG 0.397239 1_1:-56448353 Msa0030300:CDS
AACCTTGACAACTTGTTTGA+AGG 0.398124 1_1:+56446957 None:intergenic
TGGGCATTGCTATGGCCATT+TGG 0.400600 1_1:-56445683 Msa0030300:CDS
TCATCAGTTCCACTAAATAA+AGG 0.410177 1_1:+56448428 None:intergenic
TTCTCCACCTGCAGGAATGA+TGG 0.414705 1_1:-56445712 Msa0030300:intron
GAGATAGTTGACAAGCGAAA+TGG 0.426687 1_1:-56448401 Msa0030300:CDS
TTGTCAAGGTTTGGGTCTGC+AGG 0.427670 1_1:-56446945 Msa0030300:CDS
TACCTTTCGGAGCATGCGTT+CGG 0.429821 1_1:+56450055 None:intergenic
ATGTTCTGTGGTGGACCTGC+AGG 0.431299 1_1:-56445603 Msa0030300:CDS
AGCGCCATGGCTCACGGCGG+CGG 0.433460 1_1:-56450182 Msa0030300:exon
TTGTATTGGTTGCAGAGAGC+AGG 0.434704 1_1:-56447193 Msa0030300:intron
GCTTCATCACTAGAACTTCC+AGG 0.434881 1_1:+56447336 None:intergenic
GGGGTCTTCATATCTGACCC+TGG 0.446822 1_1:-56445484 Msa0030300:three_prime_UTR
GAGCTGGTCCCTGATCTTGA+GGG 0.447815 1_1:+56446834 None:intergenic
TGGGAGACAAATCATTGAAC+TGG 0.455247 1_1:-56445310 Msa0030300:three_prime_UTR
AAGAACTTGCCTATTGAAGA+AGG 0.456869 1_1:-56445351 Msa0030300:three_prime_UTR
CTGATCATGAATTTAGTTCA+CGG 0.459991 1_1:+56445282 None:intergenic
ACCTTGACAACTTGTTTGAA+GGG 0.465270 1_1:+56446958 None:intergenic
GCAACTGGCAAGGATTTAGA+AGG 0.471858 1_1:-56448338 Msa0030300:intron
TTGTCTTCAGTAGACTACTT+AGG 0.475102 1_1:-56445821 Msa0030300:CDS
ATGACTGGTCCCTGATCTTG+AGG 0.475131 1_1:+56446749 None:intergenic
GTAAGGGAACCTTCAAGAGC+AGG 0.475623 1_1:-56446801 Msa0030300:CDS
GCAGCTCAGACTTCAGAGTA+AGG 0.479250 1_1:-56446860 Msa0030300:CDS
AGATAGTTGACAAGCGAAAT+GGG 0.480235 1_1:-56448400 Msa0030300:CDS
TGAGCTGGTCCCTGATCTTG+AGG 0.482216 1_1:+56446833 None:intergenic
TTGTTTGAAGGGCGAGGAGG+AGG 0.487851 1_1:+56446969 None:intergenic
TTTGCTGTTTGATGCGTAGC+GGG 0.489522 1_1:+56446884 None:intergenic
TGACTGGTCCCTGATCTTGA+GGG 0.490656 1_1:+56446750 None:intergenic
AGGAGGAGGCATCAAAGCTC+TGG 0.493369 1_1:+56446983 None:intergenic
TGGTTTGAATTTCTTGGCGG+TGG 0.495559 1_1:+56450109 None:intergenic
CCTTACTCTGAAGTCTGAGC+TGG 0.495940 1_1:+56446818 None:intergenic
GACACCGCCGCCGTGAGCCA+TGG 0.496302 1_1:+56450178 None:intergenic
CCAGCTCAGACTTTAGAGTA+AGG 0.498575 1_1:-56446776 Msa0030300:CDS
CCAGCTCAGACTTCAGAGTA+AGG 0.500871 1_1:-56446818 Msa0030300:CDS
GCTTCTGGAAAAGCTGTGTC+TGG 0.504121 1_1:-56447162 Msa0030300:CDS
AGCGGAGGTTAGAGAAGCAC+AGG 0.504954 1_1:-56449954 Msa0030300:CDS
AAAAGTAACTCTACAACAGA+TGG 0.517629 1_1:+56445842 None:intergenic
ACAATCAGAAAACCTAATCA+AGG 0.527811 1_1:-56450226 Msa0030300:five_prime_UTR
TGACTTGTTAGGATAGATTG+AGG 0.528078 1_1:-56445540 Msa0030300:three_prime_UTR
CACAAGCCTCGGACAGGTCA+TGG 0.529184 1_1:-56446696 Msa0030300:CDS
CAGTAAAAGAAGCTCCCTGC+AGG 0.530166 1_1:+56445588 None:intergenic
GATGCTCACAAGCCTCGGAC+AGG 0.531903 1_1:-56446702 Msa0030300:CDS
GGGTGGTTTGAATTTCTTGG+CGG 0.533885 1_1:+56450106 None:intergenic
GGAGCATGCGTTCGGCGGAT+CGG 0.538352 1_1:+56450063 None:intergenic
ACTCTGATGCTCACAAGCCT+CGG 0.541640 1_1:-56446656 Msa0030300:CDS
GGGTCTTCATATCTGACCCT+GGG 0.541800 1_1:-56445483 Msa0030300:three_prime_UTR
CTATTGCTTTCTTCATCTCG+AGG 0.546011 1_1:+56450249 None:intergenic
ACTCTGATGCTCACAAGCCT+CGG 0.546671 1_1:-56446707 Msa0030300:CDS
GAAATAGAATATCCCTCCGT+CGG 0.547155 1_1:-56450275 None:intergenic
ATCTCGAGGAACCCGACGGA+GGG 0.548194 1_1:+56450263 None:intergenic
GCCCTTCAAACAAGTTGTCA+AGG 0.549834 1_1:-56446959 Msa0030300:CDS
CCTTACTCTAAAGTCTGAGC+TGG 0.551248 1_1:+56446776 None:intergenic
CTTCATCTCGAGGAACCCGA+CGG 0.555144 1_1:+56450259 None:intergenic
GAAAACAGCGCCATGGCTCA+CGG 0.561570 1_1:-56450188 Msa0030300:exon
GACAACTTGTTTGAAGGGCG+AGG 0.563882 1_1:+56446963 None:intergenic
AAATAGAATATCCCTCCGTC+GGG 0.568977 1_1:-56450274 None:intergenic
GGATAAACTGGGCATTGCTA+TGG 0.570200 1_1:-56445691 Msa0030300:CDS
TGTGCTTCTCTAACCTCCGC+TGG 0.571924 1_1:+56449956 None:intergenic
CGCCGAACGCATGCTCCGAA+AGG 0.581830 1_1:-56450057 Msa0030300:intron
CTTTCGGAGCATGCGTTCGG+CGG 0.585097 1_1:+56450058 None:intergenic
AGGCTTGTGAGCATCAGAGT+TGG 0.585984 1_1:+56446659 None:intergenic
AGGCTTGTGAGCATCAGAGT+TGG 0.585984 1_1:+56446710 None:intergenic
TCAAGATCAGGGACCAGTCA+TGG 0.587180 1_1:-56446747 Msa0030300:CDS
TAAGGGAACCCTCAAGATCA+GGG 0.588906 1_1:-56446758 Msa0030300:CDS
TAAGGGAACCCTCAAGATCA+GGG 0.588906 1_1:-56446842 Msa0030300:CDS
TGTGAAGAAGCTGATCCAAA+TGG 0.588926 1_1:+56445668 None:intergenic
TGTGGCTGCTGCAACTGGCA+AGG 0.589859 1_1:-56448348 Msa0030300:CDS
CGGCGGGGTTGACCCTCTCG+CGG 0.596977 1_1:+56450147 None:intergenic
TGTCAACAAGCGCCGCGAGA+GGG 0.597156 1_1:-56450159 Msa0030300:CDS
CAGCTCAGACTTCAGAGTAA+GGG 0.598053 1_1:-56446859 Msa0030300:CDS
GGAAGCATTGAAGAAACAGC+AGG 0.598422 1_1:-56449921 Msa0030300:CDS
TAAGGGAACCTTCAAGAGCA+GGG 0.607477 1_1:-56446800 Msa0030300:CDS
GCTTAGACTACTACCATGAC+TGG 0.607754 1_1:+56446734 None:intergenic
GTGTCAACAAGCGCCGCGAG+AGG 0.608335 1_1:-56450160 Msa0030300:CDS
ATTTAGTGGAACTGATGATG+CGG 0.619368 1_1:-56448423 Msa0030300:CDS
ACTGGACGGGACATGTTCTG+TGG 0.622245 1_1:-56445615 Msa0030300:CDS
CAGCTCAGACTTTAGAGTAA+GGG 0.622748 1_1:-56446775 Msa0030300:CDS
AACTTGTTTGAAGGGCGAGG+AGG 0.639014 1_1:+56446966 None:intergenic
CAGCTCAGACTTCAGAGTAA+GGG 0.639698 1_1:-56446817 Msa0030300:CDS
GGACGGGACATGTTCTGTGG+TGG 0.643991 1_1:-56445612 Msa0030300:CDS
TATTATGTATCAAACAGCGT+GGG 0.644024 1_1:-56445897 Msa0030300:CDS
ACTGCAGAATTTACCAGCGG+AGG 0.647921 1_1:-56449969 Msa0030300:intron
TTAGGTCTTCTCTTTCTCCG+AGG 0.650734 1_1:+56446639 None:intergenic
TGTTCTGTGGTGGACCTGCA+GGG 0.651190 1_1:-56445602 Msa0030300:CDS
TACTACCGAAAACAGCGCCA+TGG 0.654784 1_1:-56450195 Msa0030300:exon
AATTGACAGACAAAAGTACC+AGG 0.657399 1_1:-56447299 Msa0030300:intron
GATTGAAGAGAGGTTATCTG+TGG 0.668869 1_1:-56448366 Msa0030300:CDS
GAGACTGGCAGTGAGGATGA+CGG 0.672293 1_1:-56447393 Msa0030300:CDS
CATCTCGAGGAACCCGACGG+AGG 0.680902 1_1:+56450262 None:intergenic
GCAGGAATGATGGATAAACT+GGG 0.686471 1_1:-56445702 Msa0030300:intron
AACAGCGCCATGGCTCACGG+CGG 0.693190 1_1:-56450185 Msa0030300:exon
CTACTGCCATGACCTGTCCG+AGG 0.693261 1_1:+56446690 None:intergenic
GTATTATGTATCAAACAGCG+TGG 0.694143 1_1:-56445898 Msa0030300:CDS
TGCGCAAACAGATTGAAGAG+AGG 0.706610 1_1:-56448376 Msa0030300:CDS
TGTTACAGAGACTGGCAGTG+AGG 0.712205 1_1:-56447400 Msa0030300:intron
TGAACTGCAGAATTTACCAG+CGG 0.715021 1_1:-56449972 Msa0030300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTGAATTTATTTATAAAT+AGG + chr1_1:56449117-56449136 None:intergenic 10.0%
!! ACTTAAATATTAAATAAAAC+AGG - chr1_1:56449546-56449565 Msa0030300:intron 10.0%
!! AGCAAGTATAAATAAATATA+AGG + chr1_1:56446333-56446352 None:intergenic 15.0%
!!! TTTTGTCTTTTAAGTTTTTA+AGG - chr1_1:56446575-56446594 Msa0030300:intron 15.0%
!!! TTTGTATTGATTTTAGAATT+AGG - chr1_1:56447310-56447329 Msa0030300:CDS 15.0%
!!! TTGTATTGATTTTAGAATTA+GGG - chr1_1:56447311-56447330 Msa0030300:CDS 15.0%
!! AATAAACTGAAAATAGTTTA+TGG + chr1_1:56447432-56447451 None:intergenic 15.0%
!! TAAAGAAAGATGAAAAATTA+GGG + chr1_1:56447673-56447692 None:intergenic 15.0%
!!! TTCTTTGTAAAATTATTTTG+TGG - chr1_1:56447696-56447715 Msa0030300:intron 15.0%
!!! TCAAAATTAAAAGCTTTTAA+TGG + chr1_1:56449022-56449041 None:intergenic 15.0%
!!! ATTAAATTCCAATTTGTTTA+TGG - chr1_1:56450028-56450047 Msa0030300:intron 15.0%
!! AAAATTATACTATGCTTGTT+TGG - chr1_1:56445806-56445825 Msa0030300:CDS 20.0%
!!! TTTATTTCTATAAGCTCTTA+AGG - chr1_1:56446173-56446192 Msa0030300:intron 20.0%
!!! ATAAATATAAGGCTTTGTTT+TGG + chr1_1:56446322-56446341 None:intergenic 20.0%
!!! AAGACATATTTTTCATTCTT+GGG + chr1_1:56446417-56446436 None:intergenic 20.0%
!!! AAAGACATATTTTTCATTCT+TGG + chr1_1:56446418-56446437 None:intergenic 20.0%
!!! GTTTTTGACAAATTATATCT+AGG - chr1_1:56446729-56446748 Msa0030300:CDS 20.0%
!! AACTTATAACTTATATGATG+AGG - chr1_1:56446897-56446916 Msa0030300:CDS 20.0%
!! ACTTATAACTTATATGATGA+GGG - chr1_1:56446898-56446917 Msa0030300:CDS 20.0%
!!! AAATATGTTCCTTTATTTAG+TGG - chr1_1:56447042-56447061 Msa0030300:intron 20.0%
!!! ATTAAGTTGTTTATGTAAAC+AGG - chr1_1:56447595-56447614 Msa0030300:intron 20.0%
!!! TTAAGTTGTTTATGTAAACA+GGG - chr1_1:56447596-56447615 Msa0030300:intron 20.0%
!! AAAGAAAGATGAAAAATTAG+GGG + chr1_1:56447672-56447691 None:intergenic 20.0%
!! GTAAAGAAAGATGAAAAATT+AGG + chr1_1:56447674-56447693 None:intergenic 20.0%
!!! TTTATCACTTTCTTTTATCT+TGG - chr1_1:56447836-56447855 Msa0030300:intron 20.0%
!!! AGTTATCTCAATAAGTTTTT+TGG - chr1_1:56448230-56448249 Msa0030300:intron 20.0%
!!! AGTGGATAAATTTTTTGTAT+TGG - chr1_1:56448272-56448291 Msa0030300:intron 20.0%
!! TAAACTAAAAGATATGAGAA+AGG + chr1_1:56449165-56449184 None:intergenic 20.0%
!!! TTTCAATTTTGCATTTAAAG+TGG - chr1_1:56449191-56449210 Msa0030300:intron 20.0%
!! CACATTCAAATAGTTATTAT+AGG + chr1_1:56449277-56449296 None:intergenic 20.0%
!! CTATAATAACTATTTGAATG+TGG - chr1_1:56449275-56449294 Msa0030300:intron 20.0%
!! ACAACAATAAATTGGAAATA+AGG + chr1_1:56449435-56449454 None:intergenic 20.0%
!! ATAAATGTGCATTACAATTA+GGG + chr1_1:56449748-56449767 None:intergenic 20.0%
!! AATAAATGTGCATTACAATT+AGG + chr1_1:56449749-56449768 None:intergenic 20.0%
!!! ATTTAATTTTAAGTAACCCA+GGG + chr1_1:56450015-56450034 None:intergenic 20.0%
!!! AATTTAATTTTAAGTAACCC+AGG + chr1_1:56450016-56450035 None:intergenic 20.0%
!! TATTATTGTATTACCAGATA+TGG - chr1_1:56450086-56450105 Msa0030300:CDS 20.0%
! GAGAATAAATAACCGAATTA+GGG + chr1_1:56445480-56445499 None:intergenic 25.0%
! AGAGAATAAATAACCGAATT+AGG + chr1_1:56445481-56445500 None:intergenic 25.0%
! ACAAGATCTTCAATATGTTA+TGG - chr1_1:56445756-56445775 Msa0030300:intron 25.0%
!! AATAAGTTGAAAACAGCTTA+AGG + chr1_1:56445913-56445932 None:intergenic 25.0%
! ATTAAGCTGTATATCTGAAT+AGG - chr1_1:56446028-56446047 Msa0030300:intron 25.0%
! TTAAGCTGTATATCTGAATA+GGG - chr1_1:56446029-56446048 Msa0030300:intron 25.0%
!! GAGTTTATGGAAACATTTTA+TGG - chr1_1:56446125-56446144 Msa0030300:intron 25.0%
! TCTTATAGCCTATATGAAAA+TGG - chr1_1:56446212-56446231 Msa0030300:intron 25.0%
!! AAAGCAAACCATTTTCATAT+AGG + chr1_1:56446223-56446242 None:intergenic 25.0%
!! AAATATGTCTTTCAGTGTTT+TGG - chr1_1:56446426-56446445 Msa0030300:intron 25.0%
!! AATATGTCTTTCAGTGTTTT+GGG - chr1_1:56446427-56446446 Msa0030300:intron 25.0%
! GGTGACAAAAAATATGTTTA+GGG - chr1_1:56446448-56446467 Msa0030300:intron 25.0%
! AAATTATATCTAGGTCTGTT+TGG - chr1_1:56446738-56446757 Msa0030300:CDS 25.0%
! ATTAGTTGAAAACAGCTTAT+GGG + chr1_1:56446844-56446863 None:intergenic 25.0%
! AATTAGTTGAAAACAGCTTA+TGG + chr1_1:56446845-56446864 None:intergenic 25.0%
! ATTAAGCTGTTTATCTAAAC+AGG - chr1_1:56446931-56446950 Msa0030300:CDS 25.0%
! TTAAGCTGTTTATCTAAACA+GGG - chr1_1:56446932-56446951 Msa0030300:CDS 25.0%
!! TTGTTGTTGATGTATTATGT+TGG - chr1_1:56447207-56447226 Msa0030300:intron 25.0%
!!! TTTTAGAATTAGGGTTTGTT+TGG - chr1_1:56447320-56447339 Msa0030300:CDS 25.0%
!!! TAAAATAAAGCTGTTTTCGT+AGG + chr1_1:56447478-56447497 None:intergenic 25.0%
! ATCATTAGTGTAAATGCTAT+AGG - chr1_1:56447536-56447555 Msa0030300:intron 25.0%
!! CTATGTGACTTTACAATTTT+TGG - chr1_1:56447750-56447769 Msa0030300:intron 25.0%
! TAAACACAGAATATTAAGGA+AGG + chr1_1:56447820-56447839 None:intergenic 25.0%
! GTGATAAACACAGAATATTA+AGG + chr1_1:56447824-56447843 None:intergenic 25.0%
! AATAGAAACATTATATGCAG+GGG + chr1_1:56447897-56447916 None:intergenic 25.0%
! CAATAGAAACATTATATGCA+GGG + chr1_1:56447898-56447917 None:intergenic 25.0%
!! TTGTTGACATTTTATCAAAC+AGG + chr1_1:56448046-56448065 None:intergenic 25.0%
! ATTATATCGATGAAAAGTAG+TGG - chr1_1:56448254-56448273 Msa0030300:intron 25.0%
! ATAATGTGTGACTATCTATT+CGG + chr1_1:56448427-56448446 None:intergenic 25.0%
!! ATCTCTGTTTAGATGAATTT+TGG + chr1_1:56448560-56448579 None:intergenic 25.0%
! TAATTACCATTCATTCTAAC+TGG - chr1_1:56448930-56448949 Msa0030300:intron 25.0%
!!! AAAGTTGAGACTTTTTTAAG+TGG - chr1_1:56448980-56448999 Msa0030300:intron 25.0%
! TCACTTATGATTGTATGATA+AGG - chr1_1:56449046-56449065 Msa0030300:intron 25.0%
! AAAAGATATGAGAAAGGTAA+GGG + chr1_1:56449159-56449178 None:intergenic 25.0%
! TAAAAGATATGAGAAAGGTA+AGG + chr1_1:56449160-56449179 None:intergenic 25.0%
! TTATTATAGGCATTTACACA+TGG + chr1_1:56449264-56449283 None:intergenic 25.0%
!! TTTCCAATTTATTGTTGTTG+TGG - chr1_1:56449437-56449456 Msa0030300:intron 25.0%
! CAGTTTATTTGTTCATCAAA+TGG - chr1_1:56449683-56449702 Msa0030300:intron 25.0%
!!! TCTTACAATTACGTTTTAAC+TGG - chr1_1:56449846-56449865 Msa0030300:intron 25.0%
!!! AGATTAATAGCTTTTGACTA+TGG - chr1_1:56449974-56449993 Msa0030300:intron 25.0%
!!! GATTAATAGCTTTTGACTAT+GGG - chr1_1:56449975-56449994 Msa0030300:intron 25.0%
!!! ATTAATAGCTTTTGACTATG+GGG - chr1_1:56449976-56449995 Msa0030300:intron 25.0%
!! TGTAAGATTGATTCATTTGA+AGG - chr1_1:56450247-56450266 Msa0030300:five_prime_UTR 25.0%
ACAATCAGAAAACCTAATCA+AGG - chr1_1:56445253-56445272 Msa0030300:three_prime_UTR 30.0%
! AGTATTTTGCTTCCTTGATT+AGG + chr1_1:56445268-56445287 None:intergenic 30.0%
!!! ATTTGGTTTTTGAGAGAAAC+GGG + chr1_1:56445396-56445415 None:intergenic 30.0%
!!! GATTTGGTTTTTGAGAGAAA+CGG + chr1_1:56445397-56445416 None:intergenic 30.0%
AGAAGATTAAGTTCTTTGAG+AGG - chr1_1:56445629-56445648 Msa0030300:CDS 30.0%
TTGAGAGGAGAAAAATTGAA+CGG - chr1_1:56445644-56445663 Msa0030300:CDS 30.0%
TATACTATGCTTGTTTGGAT+TGG - chr1_1:56445811-56445830 Msa0030300:CDS 30.0%
GCTTATTCGAGCTTATTTAT+TGG - chr1_1:56445833-56445852 Msa0030300:CDS 30.0%
!! CTTATTTTCATAAGCTCTCT+AGG - chr1_1:56445927-56445946 Msa0030300:intron 30.0%
TAAGCTGTATATCTGAATAG+GGG - chr1_1:56446030-56446049 Msa0030300:intron 30.0%
AAACTGAAAAACACAGCTTA+TGG + chr1_1:56446156-56446175 None:intergenic 30.0%
! ACTTGCTGCTGTAAATAAAT+AGG - chr1_1:56446346-56446365 Msa0030300:intron 30.0%
GGGTGACAAAAAATATGTTT+AGG - chr1_1:56446447-56446466 Msa0030300:intron 30.0%
! AAAATATGTTTAGGGTCTGT+CGG - chr1_1:56446456-56446475 Msa0030300:intron 30.0%
! AGGATAGCTTATAGCTTTTA+TGG - chr1_1:56446595-56446614 Msa0030300:intron 30.0%
TAAGCTGTTTATCTAAACAG+GGG - chr1_1:56446933-56446952 Msa0030300:CDS 30.0%
GGAACATATTTCTCATTCTT+GGG + chr1_1:56447033-56447052 None:intergenic 30.0%
AGGAACATATTTCTCATTCT+TGG + chr1_1:56447034-56447053 None:intergenic 30.0%
TCATCAGTTCCACTAAATAA+AGG + chr1_1:56447054-56447073 None:intergenic 30.0%
!! TTTATTTTCATAAGCTCTCC+AGG - chr1_1:56447446-56447465 Msa0030300:intron 30.0%
! CACTTTCTTTTATCTTGGTT+TGG - chr1_1:56447841-56447860 Msa0030300:intron 30.0%
GCAATAGAAACATTATATGC+AGG + chr1_1:56447899-56447918 None:intergenic 30.0%
AAACCAAGCACTTGAAATAA+GGG + chr1_1:56447928-56447947 None:intergenic 30.0%
AAAACCAAGCACTTGAAATA+AGG + chr1_1:56447929-56447948 None:intergenic 30.0%
! TGACATTTTATCAAACAGGA+AGG + chr1_1:56448042-56448061 None:intergenic 30.0%
!!! GATGATGATTTTTTTCTTCC+TGG - chr1_1:56448125-56448144 Msa0030300:intron 30.0%
!!! AGCAAAGATGTTTTAGTACT+TGG - chr1_1:56448205-56448224 Msa0030300:intron 30.0%
!!! GCAAAGATGTTTTAGTACTT+GGG - chr1_1:56448206-56448225 Msa0030300:intron 30.0%
ATTGCTAGTTGTTACTCTTA+CGG + chr1_1:56448373-56448392 None:intergenic 30.0%
AAATCTGCCTCTACAAAAAT+GGG + chr1_1:56448473-56448492 None:intergenic 30.0%
AAGTTTCCAGTTAGAATGAA+TGG + chr1_1:56448939-56448958 None:intergenic 30.0%
TAAGGATTTACTCTTATCAC+TGG - chr1_1:56449064-56449083 Msa0030300:intron 30.0%
AATAGGAATGCATTTCAAGA+CGG + chr1_1:56449100-56449119 None:intergenic 30.0%
!! CAATTTTGCATTTAAAGTGG+TGG - chr1_1:56449194-56449213 Msa0030300:intron 30.0%
AATCATGAGAATATGATGAC+AGG - chr1_1:56449361-56449380 Msa0030300:intron 30.0%
TTGCCACAACAACAATAAAT+TGG + chr1_1:56449443-56449462 None:intergenic 30.0%
GATAGTTACTGTGTTCAATT+TGG + chr1_1:56449492-56449511 None:intergenic 30.0%
TATTATGTATCAAACAGCGT+GGG - chr1_1:56449582-56449601 Msa0030300:intron 30.0%
AAAAGTAACTCTACAACAGA+TGG + chr1_1:56449640-56449659 None:intergenic 30.0%
!!! ACAATTACGTTTTAACTGGA+CGG - chr1_1:56449850-56449869 Msa0030300:intron 30.0%
!! CATATATGTACTGACTTGTT+AGG - chr1_1:56449928-56449947 Msa0030300:CDS 30.0%
GTTGTTGTCCATAAACAAAT+TGG + chr1_1:56450039-56450058 None:intergenic 30.0%
! ATAGGCAAGTTCTTTTGTAA+AGG + chr1_1:56450122-56450141 None:intergenic 30.0%
! CTGATCATGAATTTAGTTCA+CGG + chr1_1:56450200-56450219 None:intergenic 30.0%
! ATTAAGGGGGTTTTACCTTT+CGG + chr1_1:56445440-56445459 None:intergenic 35.0%
AGACAGTTTGATTGAGCTTA+TGG - chr1_1:56445870-56445889 Msa0030300:CDS 35.0%
TCCACTAAATAAGTCCAAAC+AGG + chr1_1:56446065-56446084 None:intergenic 35.0%
CACACAAGTACTTATGTTAG+TGG + chr1_1:56446094-56446113 None:intergenic 35.0%
TAAGTACTTGTGTGACAGTT+TGG - chr1_1:56446100-56446119 Msa0030300:intron 35.0%
AAGTACTTGTGTGACAGTTT+GGG - chr1_1:56446101-56446120 Msa0030300:intron 35.0%
! AAATATGTTTAGGGTCTGTC+GGG - chr1_1:56446457-56446476 Msa0030300:intron 35.0%
! ATTTAGTGGAACTGATGATG+CGG - chr1_1:56447056-56447075 Msa0030300:intron 35.0%
AGATAGTTGACAAGCGAAAT+GGG - chr1_1:56447079-56447098 Msa0030300:intron 35.0%
TAACTCAAGTGGTTGATCTA+GGG + chr1_1:56447248-56447267 None:intergenic 35.0%
TATCCAAAGTGTAACTCAAG+TGG + chr1_1:56447259-56447278 None:intergenic 35.0%
TACTAACATAAGCACTTGTG+AGG - chr1_1:56447364-56447383 Msa0030300:CDS 35.0%
ACTAACATAAGCACTTGTGA+GGG - chr1_1:56447365-56447384 Msa0030300:CDS 35.0%
GTTTATGGACATACCATAAG+AGG + chr1_1:56447417-56447436 None:intergenic 35.0%
TGAAAAATTAGGGGTTGCAT+TGG + chr1_1:56447663-56447682 None:intergenic 35.0%
! ATCAATTGACTGAAAGTGCA+GGG + chr1_1:56447788-56447807 None:intergenic 35.0%
! TTACCCTTATTTCAAGTGCT+TGG - chr1_1:56447922-56447941 Msa0030300:intron 35.0%
!!! TTCAAGTGCTTGGTTTTAGT+TGG - chr1_1:56447932-56447951 Msa0030300:intron 35.0%
! TCTGTTTGAAATTGGTGACT+GGG - chr1_1:56447967-56447986 Msa0030300:intron 35.0%
! CATTTTATCAAACAGGAAGG+AGG + chr1_1:56448039-56448058 None:intergenic 35.0%
!! AATTGACAGACAAAAGTACC+AGG - chr1_1:56448180-56448199 Msa0030300:intron 35.0%
!!! AACCTGATTTTTTTCATCGC+TGG + chr1_1:56448348-56448367 None:intergenic 35.0%
!! ATCTTAGCCCATTTTTGTAG+AGG - chr1_1:56448463-56448482 Msa0030300:intron 35.0%
GAAATCTGCCTCTACAAAAA+TGG + chr1_1:56448474-56448493 None:intergenic 35.0%
! ACCTTGACAACTTGTTTGAA+GGG + chr1_1:56448524-56448543 None:intergenic 35.0%
! AACCTTGACAACTTGTTTGA+AGG + chr1_1:56448525-56448544 None:intergenic 35.0%
TCAAACAAGTTGTCAAGGTT+TGG - chr1_1:56448525-56448544 Msa0030300:intron 35.0%
CAAACAAGTTGTCAAGGTTT+GGG - chr1_1:56448526-56448545 Msa0030300:intron 35.0%
ACCTAAGAAGAAAAAGAAGC+AGG - chr1_1:56448857-56448876 Msa0030300:intron 35.0%
! ACCTGCTTCTTTTTCTTCTT+AGG + chr1_1:56448861-56448880 None:intergenic 35.0%
! CACTTATGTCTTTTGTGTTC+AGG - chr1_1:56449132-56449151 Msa0030300:intron 35.0%
TACTGTCTTCCTTGAAAGAA+AGG - chr1_1:56449322-56449341 Msa0030300:intron 35.0%
ACTGTCTTCCTTGAAAGAAA+GGG - chr1_1:56449323-56449342 Msa0030300:intron 35.0%
TTCATATCCCCTTTCTTTCA+AGG + chr1_1:56449334-56449353 None:intergenic 35.0%
!! ATAAGGTGTCAAGTGTGTTT+TGG + chr1_1:56449418-56449437 None:intergenic 35.0%
GTATTATGTATCAAACAGCG+TGG - chr1_1:56449581-56449600 Msa0030300:intron 35.0%
TTGTCTTCAGTAGACTACTT+AGG - chr1_1:56449658-56449677 Msa0030300:intron 35.0%
!!! CAATTACGTTTTAACTGGAC+GGG - chr1_1:56449851-56449870 Msa0030300:intron 35.0%
!! TGACTTGTTAGGATAGATTG+AGG - chr1_1:56449939-56449958 Msa0030300:CDS 35.0%
AGGAAATTACACACCATATC+TGG + chr1_1:56450102-56450121 None:intergenic 35.0%
AAGAACTTGCCTATTGAAGA+AGG - chr1_1:56450128-56450147 Msa0030300:CDS 35.0%
CGTTCAAAACCTTCTTCAAT+AGG + chr1_1:56450140-56450159 None:intergenic 35.0%
CTATTGCTTTCTTCATCTCG+AGG + chr1_1:56445233-56445252 None:intergenic 40.0%
AACGGGTGGTTTGAATTTCT+TGG + chr1_1:56445379-56445398 None:intergenic 40.0%
AGTGTAAGGGTTGGGATTAA+GGG + chr1_1:56445455-56445474 None:intergenic 40.0%
TAGTGTAAGGGTTGGGATTA+AGG + chr1_1:56445456-56445475 None:intergenic 40.0%
! TTAGGGTTAGTGTAAGGGTT+GGG + chr1_1:56445463-56445482 None:intergenic 40.0%
! ATTAGGGTTAGTGTAAGGGT+TGG + chr1_1:56445464-56445483 None:intergenic 40.0%
! CCGAATTAGGGTTAGTGTAA+GGG + chr1_1:56445468-56445487 None:intergenic 40.0%
CCCTTACACTAACCCTAATT+CGG - chr1_1:56445465-56445484 Msa0030300:three_prime_UTR 40.0%
! ACCGAATTAGGGTTAGTGTA+AGG + chr1_1:56445469-56445488 None:intergenic 40.0%
TGAACTGCAGAATTTACCAG+CGG - chr1_1:56445507-56445526 Msa0030300:three_prime_UTR 40.0%
GTTTGATTGAGCTTATGGAC+CGG - chr1_1:56445875-56445894 Msa0030300:CDS 40.0%
CTTAAGGTCATGTCATTAGC+CGG + chr1_1:56445897-56445916 None:intergenic 40.0%
GCCTGTTTGGACTTATTTAG+TGG - chr1_1:56446061-56446080 Msa0030300:intron 40.0%
TGACAGTTTGGGAGAGTTTA+TGG - chr1_1:56446112-56446131 Msa0030300:intron 40.0%
! AATTTCCCAAGCGCTTTTGT+CGG + chr1_1:56446506-56446525 None:intergenic 40.0%
! AAAGCGCTTGGGAAATTGTT+TGG - chr1_1:56446509-56446528 Msa0030300:intron 40.0%
AAGCGCTTGGGAAATTGTTT+GGG - chr1_1:56446510-56446529 Msa0030300:intron 40.0%
AAATTGTTTGGGAGAGCTAG+TGG - chr1_1:56446521-56446540 Msa0030300:intron 40.0%
! CTAATTTTCGCAAGCTGTCT+AGG - chr1_1:56446859-56446878 Msa0030300:CDS 40.0%
GAGATAGTTGACAAGCGAAA+TGG - chr1_1:56447078-56447097 Msa0030300:intron 40.0%
GATTGAAGAGAGGTTATCTG+TGG - chr1_1:56447113-56447132 Msa0030300:intron 40.0%
GTAACTCAAGTGGTTGATCT+AGG + chr1_1:56447249-56447268 None:intergenic 40.0%
CAACCACTTGAGTTACACTT+TGG - chr1_1:56447253-56447272 Msa0030300:intron 40.0%
TTGTGAGGGAGACTACTTTA+GGG - chr1_1:56447379-56447398 Msa0030300:CDS 40.0%
! AGACTACTTTAGGGAGCTTA+AGG - chr1_1:56447388-56447407 Msa0030300:CDS 40.0%
GAGCTTAAGGAAACCTCTTA+TGG - chr1_1:56447401-56447420 Msa0030300:intron 40.0%
! TGTTTTCGTAGGAACTATCC+TGG + chr1_1:56447467-56447486 None:intergenic 40.0%
! GATCAATTGACTGAAAGTGC+AGG + chr1_1:56447789-56447808 None:intergenic 40.0%
AGAAACATTATATGCAGGGG+CGG + chr1_1:56447894-56447913 None:intergenic 40.0%
! AGCTGAGCTCTGTTTGAAAT+TGG - chr1_1:56447959-56447978 Msa0030300:intron 40.0%
! CTCTGTTTGAAATTGGTGAC+TGG - chr1_1:56447966-56447985 Msa0030300:intron 40.0%
! GGAAGGAGGCATAAATACAA+AGG + chr1_1:56448025-56448044 None:intergenic 40.0%
CTAAAACATCTTTGCTCACC+TGG + chr1_1:56448201-56448220 None:intergenic 40.0%
GTCCAGCGATGAAAAAAATC+AGG - chr1_1:56448343-56448362 Msa0030300:CDS 40.0%
!!! TTTTGCTGTTTGATGCGTAG+CGG + chr1_1:56448599-56448618 None:intergenic 40.0%
!! CAGCTCAGACTTTAGAGTAA+GGG - chr1_1:56448704-56448723 Msa0030300:intron 40.0%
CTGTCTTCCTTGAAAGAAAG+GGG - chr1_1:56449324-56449343 Msa0030300:intron 40.0%
AGTTAGCTCAAGCTTTACTG+TGG - chr1_1:56449520-56449539 Msa0030300:intron 40.0%
GCATTACAATTAGGGACATC+AGG + chr1_1:56449740-56449759 None:intergenic 40.0%
AGTTTATCCATCATTCCTGC+AGG + chr1_1:56449777-56449796 None:intergenic 40.0%
!! TGCAGGAATGATGGATAAAC+TGG - chr1_1:56449776-56449795 Msa0030300:intron 40.0%
!! GCAGGAATGATGGATAAACT+GGG - chr1_1:56449777-56449796 Msa0030300:intron 40.0%
TGTGAAGAAGCTGATCCAAA+TGG + chr1_1:56449814-56449833 None:intergenic 40.0%
!! GTTTTGAACGAGCTGCATAT+GGG - chr1_1:56450150-56450169 Msa0030300:CDS 40.0%
TGGGAGACAAATCATTGAAC+TGG - chr1_1:56450169-56450188 Msa0030300:CDS 40.0%
! GGTGGTTTTTCTACGGTTTG+CGG + chr1_1:56445355-56445374 None:intergenic 45.0%
! TCTTGGCGGTGGTTTTTCTA+CGG + chr1_1:56445362-56445381 None:intergenic 45.0%
TGGTTTGAATTTCTTGGCGG+TGG + chr1_1:56445373-56445392 None:intergenic 45.0%
GGGTGGTTTGAATTTCTTGG+CGG + chr1_1:56445376-56445395 None:intergenic 45.0%
!! TGGTTTTTGAGAGAAACGGG+TGG + chr1_1:56445393-56445412 None:intergenic 45.0%
TGTAAGGGTTGGGATTAAGG+GGG + chr1_1:56445453-56445472 None:intergenic 45.0%
GTGTAAGGGTTGGGATTAAG+GGG + chr1_1:56445454-56445473 None:intergenic 45.0%
!! GGAAGCATTGAAGAAACAGC+AGG - chr1_1:56445558-56445577 Msa0030300:exon 45.0%
AGCTTCTTCGTCGTCTTCTT+CGG - chr1_1:56445696-56445715 Msa0030300:CDS 45.0%
TTAAGCGAAGCAAGCTGATC+AGG + chr1_1:56445736-56445755 None:intergenic 45.0%
AGGGGTTTATACTGCCTGTT+TGG - chr1_1:56446048-56446067 Msa0030300:intron 45.0%
!! TATCTACCGACAAAAGCGCT+TGG - chr1_1:56446497-56446516 Msa0030300:intron 45.0%
!! ATCTACCGACAAAAGCGCTT+GGG - chr1_1:56446498-56446517 Msa0030300:intron 45.0%
TCAGCACTTGTGAGACAGTT+TGG - chr1_1:56446790-56446809 Msa0030300:CDS 45.0%
TGCGCAAACAGATTGAAGAG+AGG - chr1_1:56447103-56447122 Msa0030300:intron 45.0%
GCAACTGGCAAGGATTTAGA+AGG - chr1_1:56447141-56447160 Msa0030300:CDS 45.0%
ACTGGCAAGGATTTAGAAGG+TGG - chr1_1:56447144-56447163 Msa0030300:CDS 45.0%
CTTGTGAGGGAGACTACTTT+AGG - chr1_1:56447378-56447397 Msa0030300:CDS 45.0%
GGCGGATGGAAAAATTATCC+AGG + chr1_1:56447876-56447895 None:intergenic 45.0%
! TGTGCTACTGTTACAGAGAC+TGG - chr1_1:56448071-56448090 Msa0030300:intron 45.0%
GCTTCATCACTAGAACTTCC+AGG + chr1_1:56448146-56448165 None:intergenic 45.0%
!! TTGTATTGGTTGCAGAGAGC+AGG - chr1_1:56448286-56448305 Msa0030300:intron 45.0%
GCCCTTCAAACAAGTTGTCA+AGG - chr1_1:56448520-56448539 Msa0030300:intron 45.0%
!! TTTGCTGTTTGATGCGTAGC+GGG + chr1_1:56448598-56448617 None:intergenic 45.0%
CAGCTCAGACTTCAGAGTAA+GGG - chr1_1:56448620-56448639 Msa0030300:intron 45.0%
TAAGGGAACCCTCAAGATCA+GGG - chr1_1:56448637-56448656 Msa0030300:intron 45.0%
CAGCTCAGACTTCAGAGTAA+GGG - chr1_1:56448620-56448639 Msa0030300:intron 45.0%
TAAGGGAACCTTCAAGAGCA+GGG - chr1_1:56448679-56448698 Msa0030300:intron 45.0%
!! CCTTACTCTAAAGTCTGAGC+TGG + chr1_1:56448706-56448725 None:intergenic 45.0%
!! CCAGCTCAGACTTTAGAGTA+AGG - chr1_1:56448703-56448722 Msa0030300:intron 45.0%
TAAGGGAACCCTCAAGATCA+GGG - chr1_1:56448637-56448656 Msa0030300:intron 45.0%
GCTTAGACTACTACCATGAC+TGG + chr1_1:56448748-56448767 None:intergenic 45.0%
TTAGGTCTTCTCTTTCTCCG+AGG + chr1_1:56448843-56448862 None:intergenic 45.0%
GTTGTTGTGGCAACTACGTT+TGG - chr1_1:56449450-56449469 Msa0030300:intron 45.0%
CACATTTATTCTCCACCTGC+AGG - chr1_1:56449759-56449778 Msa0030300:intron 45.0%
TTATCCATCATTCCTGCAGG+TGG + chr1_1:56449774-56449793 None:intergenic 45.0%
! GGATAAACTGGGCATTGCTA+TGG - chr1_1:56449788-56449807 Msa0030300:intron 45.0%
!!! GGTTTTGAACGAGCTGCATA+TGG - chr1_1:56450149-56450168 Msa0030300:CDS 45.0%
!!! TTAATTTTTTGTTATAAAAA+TGG - chr1_1:56446634-56446653 Msa0030300:CDS 5.0%
TACTACCGAAAACAGCGCCA+TGG - chr1_1:56445284-56445303 Msa0030300:three_prime_UTR 50.0%
! TTTTTCTACGGTTTGCGGCG+GGG + chr1_1:56445350-56445369 None:intergenic 50.0%
! GTTTTTCTACGGTTTGCGGC+GGG + chr1_1:56445351-56445370 None:intergenic 50.0%
! GGTTTTTCTACGGTTTGCGG+CGG + chr1_1:56445352-56445371 None:intergenic 50.0%
TACCTTTCGGAGCATGCGTT+CGG + chr1_1:56445427-56445446 None:intergenic 50.0%
ACTGCAGAATTTACCAGCGG+AGG - chr1_1:56445510-56445529 Msa0030300:three_prime_UTR 50.0%
! AGAAGCACAGGTGCAGAAAC+TGG - chr1_1:56445537-56445556 Msa0030300:three_prime_UTR 50.0%
ATATCTTCCGTTCCACAGCG+AGG + chr1_1:56445597-56445616 None:intergenic 50.0%
TTATCTGTGGCTGCTGCAAC+TGG - chr1_1:56447126-56447145 Msa0030300:intron 50.0%
AAACAGGGCCATAGAACCAG+AGG - chr1_1:56447611-56447630 Msa0030300:intron 50.0%
!! TTGGTTTGGTTGTGCACTCC+TGG - chr1_1:56447855-56447874 Msa0030300:intron 50.0%
ACATTATATGCAGGGGCGGA+TGG + chr1_1:56447890-56447909 None:intergenic 50.0%
TGTTACAGAGACTGGCAGTG+AGG - chr1_1:56448079-56448098 Msa0030300:intron 50.0%
! GCTTCTGGAAAAGCTGTGTC+TGG - chr1_1:56448317-56448336 Msa0030300:intron 50.0%
! AACTTGTTTGAAGGGCGAGG+AGG + chr1_1:56448516-56448535 None:intergenic 50.0%
! GACAACTTGTTTGAAGGGCG+AGG + chr1_1:56448519-56448538 None:intergenic 50.0%
TTGTCAAGGTTTGGGTCTGC+AGG - chr1_1:56448534-56448553 Msa0030300:intron 50.0%
GCAGCTCAGACTTCAGAGTA+AGG - chr1_1:56448619-56448638 Msa0030300:intron 50.0%
GTAAGGGAACCCTCAAGATC+AGG - chr1_1:56448636-56448655 Msa0030300:intron 50.0%
!! CCTTACTCTGAAGTCTGAGC+TGG + chr1_1:56448622-56448641 None:intergenic 50.0%
CCAGCTCAGACTTCAGAGTA+AGG - chr1_1:56448661-56448680 Msa0030300:intron 50.0%
GTAAGGGAACCTTCAAGAGC+AGG - chr1_1:56448678-56448697 Msa0030300:intron 50.0%
GTAAGGGAACCCTCAAGATC+AGG - chr1_1:56448636-56448655 Msa0030300:intron 50.0%
! TGACTGGTCCCTGATCTTGA+GGG + chr1_1:56448732-56448751 None:intergenic 50.0%
! ATGACTGGTCCCTGATCTTG+AGG + chr1_1:56448733-56448752 None:intergenic 50.0%
TCAAGATCAGGGACCAGTCA+TGG - chr1_1:56448732-56448751 Msa0030300:intron 50.0%
AGGCTTGTGAGCATCAGAGT+TGG + chr1_1:56448772-56448791 None:intergenic 50.0%
ACTCTGATGCTCACAAGCCT+CGG - chr1_1:56448772-56448791 Msa0030300:intron 50.0%
AGGCTTGTGAGCATCAGAGT+TGG + chr1_1:56448772-56448791 None:intergenic 50.0%
ACTCTGATGCTCACAAGCCT+CGG - chr1_1:56448772-56448791 Msa0030300:intron 50.0%
TTCTCCACCTGCAGGAATGA+TGG - chr1_1:56449767-56449786 Msa0030300:intron 50.0%
! TGGGCATTGCTATGGCCATT+TGG - chr1_1:56449796-56449815 Msa0030300:intron 50.0%
CAGTAAAAGAAGCTCCCTGC+AGG + chr1_1:56449894-56449913 None:intergenic 50.0%
! CTGCAGGGAGCTTCTTTTAC+TGG - chr1_1:56449892-56449911 Msa0030300:intron 50.0%
GGGTCTTCATATCTGACCCT+GGG - chr1_1:56449996-56450015 Msa0030300:intron 50.0%
CTTCATCTCGAGGAACCCGA+CGG + chr1_1:56445223-56445242 None:intergenic 55.0%
!! GTGAGCCATGGCGCTGTTTT+CGG + chr1_1:56445292-56445311 None:intergenic 55.0%
GAAAACAGCGCCATGGCTCA+CGG - chr1_1:56445291-56445310 Msa0030300:three_prime_UTR 55.0%
TGTGCTTCTCTAACCTCCGC+TGG + chr1_1:56445526-56445545 None:intergenic 55.0%
! AGCGGAGGTTAGAGAAGCAC+AGG - chr1_1:56445525-56445544 Msa0030300:three_prime_UTR 55.0%
TATTCACACTCGCCTCGCTG+TGG - chr1_1:56445582-56445601 Msa0030300:CDS 55.0%
TTGGGAGAGCTAGTGGAGAC+AGG - chr1_1:56446528-56446547 Msa0030300:intron 55.0%
!! TGGCTCCACCTCTGGTTCTA+TGG + chr1_1:56447622-56447641 None:intergenic 55.0%
TAGAACCAGAGGTGGAGCCA+AGG - chr1_1:56447622-56447641 Msa0030300:intron 55.0%
AGAACCAGAGGTGGAGCCAA+GGG - chr1_1:56447623-56447642 Msa0030300:intron 55.0%
GAGACTGGCAGTGAGGATGA+CGG - chr1_1:56448086-56448105 Msa0030300:intron 55.0%
! CAGTGAGGATGACGGTCTTC+TGG - chr1_1:56448094-56448113 Msa0030300:intron 55.0%
GAGCAGGCTTCTAGTGCTTC+TGG - chr1_1:56448302-56448321 Msa0030300:intron 55.0%
!! AGGAGGAGGCATCAAAGCTC+TGG + chr1_1:56448499-56448518 None:intergenic 55.0%
TTGTTTGAAGGGCGAGGAGG+AGG + chr1_1:56448513-56448532 None:intergenic 55.0%
GAGCTGGTCCCTGATCTTGA+GGG + chr1_1:56448648-56448667 None:intergenic 55.0%
TGAGCTGGTCCCTGATCTTG+AGG + chr1_1:56448649-56448668 None:intergenic 55.0%
ACTGGACGGGACATGTTCTG+TGG - chr1_1:56449864-56449883 Msa0030300:intron 55.0%
!! ATGTTCTGTGGTGGACCTGC+AGG - chr1_1:56449876-56449895 Msa0030300:intron 55.0%
!! TGTTCTGTGGTGGACCTGCA+GGG - chr1_1:56449877-56449896 Msa0030300:intron 55.0%
GGGGTCTTCATATCTGACCC+TGG - chr1_1:56449995-56450014 Msa0030300:intron 55.0%
ATCTCGAGGAACCCGACGGA+GGG + chr1_1:56445219-56445238 None:intergenic 60.0%
! TGTCAACAAGCGCCGCGAGA+GGG - chr1_1:56445320-56445339 Msa0030300:three_prime_UTR 60.0%
TGCGTTCGGCGGATCGGATT+TGG + chr1_1:56445413-56445432 None:intergenic 60.0%
CTTTCGGAGCATGCGTTCGG+CGG + chr1_1:56445424-56445443 None:intergenic 60.0%
ACACTCGCCTCGCTGTGGAA+CGG - chr1_1:56445587-56445606 Msa0030300:CDS 60.0%
TGTGGCTGCTGCAACTGGCA+AGG - chr1_1:56447131-56447150 Msa0030300:intron 60.0%
CAGGGCCATAGAACCAGAGG+TGG - chr1_1:56447614-56447633 Msa0030300:intron 60.0%
GAACCAGAGGTGGAGCCAAG+GGG - chr1_1:56447624-56447643 Msa0030300:intron 60.0%
AGCCAAGGGGTGGCCTATGT+GGG - chr1_1:56447637-56447656 Msa0030300:intron 60.0%
! GGGGTTGCATTGGCCCACAT+AGG + chr1_1:56447653-56447672 None:intergenic 60.0%
GAGCTGGTCCCTGCTCTTGA+AGG + chr1_1:56448690-56448709 None:intergenic 60.0%
GATGCTCACAAGCCTCGGAC+AGG - chr1_1:56448777-56448796 Msa0030300:intron 60.0%
CACAAGCCTCGGACAGGTCA+TGG - chr1_1:56448783-56448802 Msa0030300:intron 60.0%
CTACTGCCATGACCTGTCCG+AGG + chr1_1:56448792-56448811 None:intergenic 60.0%
GGACGGGACATGTTCTGTGG+TGG - chr1_1:56449867-56449886 Msa0030300:intron 60.0%
CATCTCGAGGAACCCGACGG+AGG + chr1_1:56445220-56445239 None:intergenic 65.0%
AACAGCGCCATGGCTCACGG+CGG - chr1_1:56445294-56445313 Msa0030300:three_prime_UTR 65.0%
! GTGTCAACAAGCGCCGCGAG+AGG - chr1_1:56445319-56445338 Msa0030300:three_prime_UTR 65.0%
GGAGCATGCGTTCGGCGGAT+CGG + chr1_1:56445419-56445438 None:intergenic 65.0%
CGCCGAACGCATGCTCCGAA+AGG - chr1_1:56445422-56445441 Msa0030300:three_prime_UTR 65.0%
GAGCCAAGGGGTGGCCTATG+TGG - chr1_1:56447636-56447655 Msa0030300:intron 65.0%
CCACCCCTTGGCTCCACCTC+TGG + chr1_1:56447630-56447649 None:intergenic 70.0%
CCAGAGGTGGAGCCAAGGGG+TGG - chr1_1:56447627-56447646 Msa0030300:intron 70.0%
GGCCCACATAGGCCACCCCT+TGG + chr1_1:56447642-56447661 None:intergenic 70.0%
AGCGCCATGGCTCACGGCGG+CGG - chr1_1:56445297-56445316 Msa0030300:three_prime_UTR 75.0%
GACACCGCCGCCGTGAGCCA+TGG + chr1_1:56445304-56445323 None:intergenic 75.0%
CGGCGGGGTTGACCCTCTCG+CGG + chr1_1:56445335-56445354 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56445209 56450292 56445209 ID=Msa0030300;Name=Msa0030300
chr1_1 mRNA 56445209 56450292 56445209 ID=Msa0030300-mRNA-1;Parent=Msa0030300;Name=Msa0030300-mRNA-1;_AED=0.13;_eAED=0.13;_QI=94|0.57|0.75|0.87|0.71|0.75|8|366|410
chr1_1 exon 56445209 56445720 56445209 ID=Msa0030300-mRNA-1:exon:16950;Parent=Msa0030300-mRNA-1
chr1_1 exon 56445786 56445933 56445786 ID=Msa0030300-mRNA-1:exon:16949;Parent=Msa0030300-mRNA-1
chr1_1 exon 56446623 56447018 56446623 ID=Msa0030300-mRNA-1:exon:16948;Parent=Msa0030300-mRNA-1
chr1_1 exon 56447137 56447200 56447137 ID=Msa0030300-mRNA-1:exon:16947;Parent=Msa0030300-mRNA-1
chr1_1 exon 56447300 56447414 56447300 ID=Msa0030300-mRNA-1:exon:16946;Parent=Msa0030300-mRNA-1
chr1_1 exon 56448339 56448477 56448339 ID=Msa0030300-mRNA-1:exon:16945;Parent=Msa0030300-mRNA-1
chr1_1 exon 56449901 56449984 56449901 ID=Msa0030300-mRNA-1:exon:16944;Parent=Msa0030300-mRNA-1
chr1_1 exon 56450058 56450292 56450058 ID=Msa0030300-mRNA-1:exon:16943;Parent=Msa0030300-mRNA-1
chr1_1 five_prime_UTR 56450199 56450292 56450199 ID=Msa0030300-mRNA-1:five_prime_utr;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56450058 56450198 56450058 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56449901 56449984 56449901 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56448339 56448477 56448339 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56447300 56447414 56447300 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56447137 56447200 56447137 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56446623 56447018 56446623 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56445786 56445933 56445786 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 CDS 56445575 56445720 56445575 ID=Msa0030300-mRNA-1:cds;Parent=Msa0030300-mRNA-1
chr1_1 three_prime_UTR 56445209 56445574 56445209 ID=Msa0030300-mRNA-1:three_prime_utr;Parent=Msa0030300-mRNA-1
Gene Sequence

>Msa0030300

ATGGCTCACGGCGGCGGTGTCAACAAGCGCCGCGAGAGGGTCAACCCCGCCGCAAACCGTAGAAAAACCACCGCCAAGAAATTCAAACCACCCGTTTCTCTCAAAAACCAAATCCGATCCGCCGAACGCATGCTCCGAAAGAATTTACCAGCGGAGGTTAGAGAAGCACAGGTGCAGAAACTGGAAGCATTGAAGAAACAGCAGGATATTCACACTCGCCTCGCTTACTTTCCCAAGAATGAGAAATATGTTCCTTTATTTAGTGGAACTGATGATGCGGAGATAGTTGACAAGCGAAATGGGCTGCGCAAACAGATTGAAGAGAGGTTATCTGTGGCTGCTGCAACTGGCAAGGATTTAGAAGAGACTGGCAGTGAGGATGACGGTCTTCTGGATCTCAGTGATGATGATTTTTTTCTTCCTGGAAGTTCTAGTGATGAAGCTGACGCAGATGATGAATTGACAGACAAAAGTACCAGAGAGCAGGCTTCTAGTGCTTCTGGAAAAGCTGTGTCTGGCATGTCCAGCGATGAAAAAAATCAGAGGCAGATTTCTGCCAGAGCTTTGATGCCTCCTCCTCGCCCTTCAAACAAGTTGTCAAGGTTTGGGTCTGCAGGCCAAAATTCATCTAAACAGAGATCTGATATTTCTACATCCCGCTACGCATCAAACAGCAAAAGCAGCTCAGACTTCAGAGTAAGGGAACCCTCAAGATCAGGGACCAGCTCAGACTTCAGAGTAAGGGAACCTTCAAGAGCAGGGACCAGCTCAGACTTTAGAGTAAGGGAACCCTCAAGATCAGGGACCAGTCATGGTAGTAGTCTAAGCTCCAACTCTGATGCTCACAAGCCTCGGACAGGTCATGGCAGTAGTCTAAGCTCCAACTCTGATGCTCACAAGCCTCGGAGAAAGAGAAGACCTAAGAAGAAAAAGAAGCAGGATGATACAATATGTATTATGTATCAAACAGCGTGGGCTGCGCATCAATACTTACATGTTATACATGTTCCATCTGTTGTAGAGTTACTTTTGTCTTCAGTAGACTACTTAGGATCAGTTTATTTGTTCATCAAATGGAATACATCAAGAATGATGGATAAACTGGGCATTGCTATGGCCATTTGGATCAGCTTCTTCACATTCATTCAAGATTCTTACAATTACGTTTTAACTGGACGGGACATGTTCTGTGGTGGACCTGCAGGGAGCTTCTTTTACTGGTCATTGTTATGA

Protein sequence

>Msa0030300

MAHGGGVNKRRERVNPAANRRKTTAKKFKPPVSLKNQIRSAERMLRKNLPAEVREAQVQKLEALKKQQDIHTRLAYFPKNEKYVPLFSGTDDAEIVDKRNGLRKQIEERLSVAAATGKDLEETGSEDDGLLDLSDDDFFLPGSSSDEADADDELTDKSTREQASSASGKAVSGMSSDEKNQRQISARALMPPPRPSNKLSRFGSAGQNSSKQRSDISTSRYASNSKSSSDFRVREPSRSGTSSDFRVREPSRAGTSSDFRVREPSRSGTSHGSSLSSNSDAHKPRTGHGSSLSSNSDAHKPRRKRRPKKKKKQDDTICIMYQTAWAAHQYLHVIHVPSVVELLLSSVDYLGSVYLFIKWNTSRMMDKLGIAMAIWISFFTFIQDSYNYVLTGRDMFCGGPAGSFFYWSLL*