AlfalfaGEDB | Msa0737350

M. sativa cultivar zhongmu-4 / Msa0737350

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF14009.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737350	XP_003616384.1	95.283	212	9	1	1	212	1	211	4.77e-141	402

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737350	sp\|Q6NLC8\|Y1648_ARATH	57.062	177	67	6	1	170	1	175	3.40e-59	188

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737350	G7KBN9	95.283	212	9	1	1	212	1	211	2.28e-141	402

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015460	Msa0737350	0.810237	1.273478e-50	-8.615850e-47
Msa0109590	Msa0737350	0.802246	6.143915e-49	-8.615850e-47
Msa0620620	Msa0737350	0.800571	1.354223e-48	-8.615850e-47
Msa0737350	Msa0779090	0.881836	1.722864e-70	-8.615850e-47
Msa0737350	Msa0816510	0.858824	6.316720e-63	-8.615850e-47
Msa0737350	Msa0816540	0.855360	6.646777e-62	-8.615850e-47
Msa0737350	Msa0826760	0.802643	5.089539e-49	-8.615850e-47
Msa0737350	Msa0856710	0.871304	7.569136e-67	-8.615850e-47

Showing 1 to 8 of 8 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737350	MtrunA17_Chr5g0435091	95.283	212	9	1	1	212	1	211	4.38e-145	402
Msa0737350	MtrunA17_Chr3g0111521	62.162	222	66	6	1	210	1	216	2.13e-80	239
Msa0737350	MtrunA17_Chr1g0160291	54.023	174	71	3	1	173	1	166	2.91e-57	180
Msa0737350	MtrunA17_Chr4g0044361	51.412	177	73	4	1	173	1	168	6.57e-52	166

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737350	AT1G66480.1	57.062	177	67	6	1	170	1	175	3.46e-60	188
Msa0737350	AT5G37840.1	50.718	209	86	5	1	198	1	203	1.30e-56	179
Msa0737350	AT2G01340.1	52.907	172	69	5	1	171	1	161	3.26e-53	170
Msa0737350	AT1G71015.1	50.000	170	76	4	1	170	1	161	5.99e-40	135
Msa0737350	AT1G71015.2	50.000	170	76	4	1	170	1	161	5.99e-40	135

Showing 1 to 5 of 5 entries

Previous1Next

Find 75 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACCATCATCAAATTT+GGG	0.402951	5_1:-54531826	Msa0737350:CDS
AAGATTATGAGTTTGTATAT+GGG	0.514266	5_1:-54531697	Msa0737350:CDS
AAGCCCAAATTTGATGATGG+TGG	0.537750	5_1:+54531823	None:intergenic
AAGCCTCATCTTCACCCTCA+TGG	0.515255	5_1:+54531780	None:intergenic
ACAACTTCGTTTGATGTTAT+TGG	0.130160	5_1:+54532111	None:intergenic
ACAAGAAACAAGTTAGAGGT+TGG	0.541035	5_1:+54532355	None:intergenic
ACCCTCATGGACCCATCAAA+GGG	0.521258	5_1:+54531793	None:intergenic
ACGTACCCTCCTAGGTAACG+AGG	0.744483	5_1:+54531936	None:intergenic
AGAATCAAGTAAAACATGGT+TGG	0.486013	5_1:+54532077	None:intergenic
AGAGAGTAATGATGGGTCTG+AGG	0.645019	5_1:-54531728	Msa0737350:CDS

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGTAACAAGAAACAAGTTAG+AGG	+	chr5_1:54529131-54529150	None:intergenic	30.0%
CTAATAGAGAAACCAATCAT+GGG	-	chr5_1:54529275-54529294	Msa0737350:three_prime_UTR	30.0%
GCTAAGATTATGAAGATAGA+TGG	-	chr5_1:54529323-54529342	Msa0737350:CDS	30.0%
ACAACTTCGTTTGATGTTAT+TGG	+	chr5_1:54529371-54529390	None:intergenic	30.0%
GAATCAAGTAAAACATGGTT+GGG	+	chr5_1:54529404-54529423	None:intergenic	30.0%
AGAATCAAGTAAAACATGGT+TGG	+	chr5_1:54529405-54529424	None:intergenic	30.0%
CTTGAGAATCAAGTAAAACA+TGG	+	chr5_1:54529409-54529428	None:intergenic	30.0%
CACTAACGAAATATCTGAAA+CGG	+	chr5_1:54529633-54529652	None:intergenic	30.0%
AAACCACCATCATCAAATTT+GGG	-	chr5_1:54529653-54529672	Msa0737350:intron	30.0%
GTTGTTTAACATATGTCCTT+AGG	-	chr5_1:54530094-54530113	Msa0737350:intron	30.0%

Showing 1 to 10 of 190 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	54529098	54532403	54529098	ID=Msa0737350;Name=Msa0737350
chr5_1	mRNA	54529098	54532403	54529098	ID=Msa0737350-mRNA-1;Parent=Msa0737350;Name=Msa0737350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=195\|1\|1\|1\|1\|1\|2\|218\|212
chr5_1	exon	54529098	54529378	54529098	ID=Msa0737350-mRNA-1:exon:15300;Parent=Msa0737350-mRNA-1
chr5_1	exon	54531633	54532403	54531633	ID=Msa0737350-mRNA-1:exon:15299;Parent=Msa0737350-mRNA-1
chr5_1	five_prime_UTR	54532209	54532403	54532209	ID=Msa0737350-mRNA-1:five_prime_utr;Parent=Msa0737350-mRNA-1
chr5_1	CDS	54531633	54532208	54531633	ID=Msa0737350-mRNA-1:cds;Parent=Msa0737350-mRNA-1
chr5_1	CDS	54529316	54529378	54529316	ID=Msa0737350-mRNA-1:cds;Parent=Msa0737350-mRNA-1
chr5_1	three_prime_UTR	54529098	54529315	54529098	ID=Msa0737350-mRNA-1:three_prime_utr;Parent=Msa0737350-mRNA-1

Gene Sequence

>Msa0737350

ATGGGAAACACCATAGGAAAAAGCAAAAAAGCTAAGATTATGAAGATAGATGGAGAAACCTTCAAAGTAAAAACTCCAATAACATCAAACGAAGTTGTCAAAGACTATCCCAACCATGTTTTACTTGATTCTCAAGCAGTAAAACACTTCGGGCTTAGGGCAAAACCCTTAGAGCCAAATCAAGAACTCAAGCCCAAGAAAATTTACTTCCTAGTAGATTTACCCAAGGTTCAGCCCGAAGATGAAAAAACCTCGTTACCTAGGAGGGTACGTTCTAGTGGGATAAGGAACGTGGATGCTAAGGGTAGACTTGAATTATTGATGCTATCTAAACGCTCCGTTTCAGATATTTCGTTAGTGAAACCACCATCATCAAATTTGGGCTTTGATAGGCCCTTTGATGGGTCCATGAGGGTGAAGATGAGGCTTCCTAAAGCCCAGTTGGAAAAGTTGATGGAAGAGAGTAATGATGGGTCTGAGGTGGCGGAGAAGATTATGAGTTTGTATATGGGTAGCGGTGTTGATGCGGCGGAGCATGACGGTGATGTTTTGCGGCTAAACCGAAAGCCTCGTGGGAAACGAGTGAGTTTTAGCCCAATGGAGATTGAAGAAAGTCCTGTTGAAGCAGCTCCTCAATAG

Protein sequence

>Msa0737350

MGNTIGKSKKAKIMKIDGETFKVKTPITSNEVVKDYPNHVLLDSQAVKHFGLRAKPLEPNQELKPKKIYFLVDLPKVQPEDEKTSLPRRVRSSGIRNVDAKGRLELLMLSKRSVSDISLVKPPSSNLGFDRPFDGSMRVKMRLPKAQLEKLMEESNDGSEVAEKIMSLYMGSGVDAAEHDGDVLRLNRKPRGKRVSFSPMEIEESPVEAAPQ*