Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737350 | XP_003616384.1 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 4.77e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737350 | sp|Q6NLC8|Y1648_ARATH | 57.062 | 177 | 67 | 6 | 1 | 170 | 1 | 175 | 3.40e-59 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737350 | G7KBN9 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 2.28e-141 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015460 | Msa0737350 | 0.810237 | 1.273478e-50 | -8.615850e-47 |
| Msa0109590 | Msa0737350 | 0.802246 | 6.143915e-49 | -8.615850e-47 |
| Msa0620620 | Msa0737350 | 0.800571 | 1.354223e-48 | -8.615850e-47 |
| Msa0737350 | Msa0779090 | 0.881836 | 1.722864e-70 | -8.615850e-47 |
| Msa0737350 | Msa0816510 | 0.858824 | 6.316720e-63 | -8.615850e-47 |
| Msa0737350 | Msa0816540 | 0.855360 | 6.646777e-62 | -8.615850e-47 |
| Msa0737350 | Msa0826760 | 0.802643 | 5.089539e-49 | -8.615850e-47 |
| Msa0737350 | Msa0856710 | 0.871304 | 7.569136e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737350 | MtrunA17_Chr5g0435091 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 4.38e-145 | 402 |
| Msa0737350 | MtrunA17_Chr3g0111521 | 62.162 | 222 | 66 | 6 | 1 | 210 | 1 | 216 | 2.13e-80 | 239 |
| Msa0737350 | MtrunA17_Chr1g0160291 | 54.023 | 174 | 71 | 3 | 1 | 173 | 1 | 166 | 2.91e-57 | 180 |
| Msa0737350 | MtrunA17_Chr4g0044361 | 51.412 | 177 | 73 | 4 | 1 | 173 | 1 | 168 | 6.57e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737350 | AT1G66480.1 | 57.062 | 177 | 67 | 6 | 1 | 170 | 1 | 175 | 3.46e-60 | 188 |
| Msa0737350 | AT5G37840.1 | 50.718 | 209 | 86 | 5 | 1 | 198 | 1 | 203 | 1.30e-56 | 179 |
| Msa0737350 | AT2G01340.1 | 52.907 | 172 | 69 | 5 | 1 | 171 | 1 | 161 | 3.26e-53 | 170 |
| Msa0737350 | AT1G71015.1 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 5.99e-40 | 135 |
| Msa0737350 | AT1G71015.2 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 5.99e-40 | 135 |
Find 75 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATTGGTTTCTCTATT+AGG | 0.126642 | 5_1:+54532205 | None:intergenic |
| ACAACTTCGTTTGATGTTAT+TGG | 0.130160 | 5_1:+54532111 | None:intergenic |
| GAAACCACCATCATCAAATT+TGG | 0.171380 | 5_1:-54531827 | Msa0737350:CDS |
| CCTCAATAGTATTTCCTCTT+AGG | 0.200768 | 5_1:-54529302 | Msa0737350:exon |
| GAAGATTATGAGTTTGTATA+TGG | 0.218361 | 5_1:-54531698 | Msa0737350:CDS |
| ATATATGTAGTGCTTGATTT+TGG | 0.239755 | 5_1:-54529105 | Msa0737350:three_prime_UTR |
| CCTATGGTGTTTCCCATGAT+TGG | 0.278242 | 5_1:+54532192 | None:intergenic |
| CATCAAATTTGGGCTTTGAT+AGG | 0.291266 | 5_1:-54531816 | Msa0737350:CDS |
| GGCTTTGATAGGCCCTTTGA+TGG | 0.319942 | 5_1:-54531805 | Msa0737350:CDS |
| GAGTTCTTGATTTGGCTCTA+AGG | 0.329180 | 5_1:+54532020 | None:intergenic |
| CAGTAAAACACTTCGGGCTT+AGG | 0.337959 | 5_1:-54532050 | Msa0737350:CDS |
| TCTTGTCTTGTGTTTCTTTG+TGG | 0.357395 | 5_1:+54532235 | None:intergenic |
| GCTAAGATTATGAAGATAGA+TGG | 0.365523 | 5_1:-54532156 | Msa0737350:CDS |
| CTCAAGCAGTAAAACACTTC+GGG | 0.366167 | 5_1:-54532056 | Msa0737350:CDS |
| TTGGGCTTGAGTTCTTGATT+TGG | 0.367392 | 5_1:+54532012 | None:intergenic |
| TATATATATTGGGATTGTTA+TGG | 0.373203 | 5_1:+54532327 | None:intergenic |
| TACATACCCCACGAGGCTTT+CGG | 0.379415 | 5_1:+54531626 | None:intergenic |
| TTCATCTTCGGGCTGAACCT+TGG | 0.389122 | 5_1:+54531963 | None:intergenic |
| TCATCTTCGGGCTGAACCTT+GGG | 0.401043 | 5_1:+54531964 | None:intergenic |
| AAACCACCATCATCAAATTT+GGG | 0.402951 | 5_1:-54531826 | Msa0737350:CDS |
| AGTTCTTGATTTGGCTCTAA+GGG | 0.425177 | 5_1:+54532021 | None:intergenic |
| GACTTTCTTCAATCTCCATT+GGG | 0.425939 | 5_1:+54529339 | None:intergenic |
| GGACTTTCTTCAATCTCCAT+TGG | 0.427544 | 5_1:+54529338 | None:intergenic |
| AGCCCAGTTGGAAAAGTTGA+TGG | 0.431835 | 5_1:-54531752 | Msa0737350:CDS |
| ATATATGATCGATCTTCTAT+AGG | 0.440324 | 5_1:+54529122 | None:intergenic |
| AGTAAAACACTTCGGGCTTA+GGG | 0.449480 | 5_1:-54532049 | Msa0737350:CDS |
| TATTGAGGAGCTGCTTCAAC+AGG | 0.453324 | 5_1:+54529317 | None:intergenic |
| TTGATGGAAGAGAGTAATGA+TGG | 0.466806 | 5_1:-54531736 | Msa0737350:CDS |
| TGGTTGATTGGGTGAAAGTG+TGG | 0.471214 | 5_1:+54532275 | None:intergenic |
| CACTAACGAAATATCTGAAA+CGG | 0.473609 | 5_1:+54531849 | None:intergenic |
| GAATCAAGTAAAACATGGTT+GGG | 0.474525 | 5_1:+54532078 | None:intergenic |
| CCTAATAGAGAAACCAATCA+TGG | 0.475579 | 5_1:-54532205 | Msa0737350:exon |
| CCACTAGAACGTACCCTCCT+AGG | 0.477484 | 5_1:+54531928 | None:intergenic |
| AGAATCAAGTAAAACATGGT+TGG | 0.486013 | 5_1:+54532077 | None:intergenic |
| AGTAACAAGAAACAAGTTAG+AGG | 0.492403 | 5_1:+54532351 | None:intergenic |
| GAACCTTGGGTAAATCTACT+AGG | 0.494957 | 5_1:+54531977 | None:intergenic |
| TAATGATGGGTCTGAGGTGG+CGG | 0.497077 | 5_1:-54531722 | Msa0737350:CDS |
| CACCCTCATGGACCCATCAA+AGG | 0.503885 | 5_1:+54531792 | None:intergenic |
| GATAAGGAACGTGGATGCTA+AGG | 0.505115 | 5_1:-54531905 | Msa0737350:CDS |
| GGGTACGTTCTAGTGGGATA+AGG | 0.513180 | 5_1:-54531921 | Msa0737350:CDS |
| AAGATTATGAGTTTGTATAT+GGG | 0.514266 | 5_1:-54531697 | Msa0737350:CDS |
| AAGCCTCATCTTCACCCTCA+TGG | 0.515255 | 5_1:+54531780 | None:intergenic |
| ACCCTCATGGACCCATCAAA+GGG | 0.521258 | 5_1:+54531793 | None:intergenic |
| GCTTTGATAGGCCCTTTGAT+GGG | 0.524979 | 5_1:-54531804 | Msa0737350:CDS |
| CCTAGGAGGGTACGTTCTAG+TGG | 0.533099 | 5_1:-54531928 | Msa0737350:CDS |
| GGTTGATTGGGTGAAAGTGT+GGG | 0.533520 | 5_1:+54532276 | None:intergenic |
| AAGCCCAAATTTGATGATGG+TGG | 0.537750 | 5_1:+54531823 | None:intergenic |
| ACAAGAAACAAGTTAGAGGT+TGG | 0.541035 | 5_1:+54532355 | None:intergenic |
| GGCTAAACCGAAAGCCTCGT+GGG | 0.541410 | 5_1:-54531633 | Msa0737350:CDS |
| ATGAGTTTGTATATGGGTAG+CGG | 0.554997 | 5_1:-54531691 | Msa0737350:CDS |
| CCTAAGAGGAAATACTATTG+AGG | 0.556467 | 5_1:+54529302 | None:intergenic |
| GAGGCTTCCTAAAGCCCAGT+TGG | 0.560896 | 5_1:-54531764 | Msa0737350:CDS |
| TCAAAGCCCAAATTTGATGA+TGG | 0.561669 | 5_1:+54531820 | None:intergenic |
| TCTCAAGCAGTAAAACACTT+CGG | 0.563644 | 5_1:-54532057 | Msa0737350:CDS |
| CCAATCATGGGAAACACCAT+AGG | 0.564589 | 5_1:-54532192 | Msa0737350:exon |
| GGCCCTTTGATGGGTCCATG+AGG | 0.590646 | 5_1:-54531795 | Msa0737350:CDS |
| GGTCCATGAGGGTGAAGATG+AGG | 0.594224 | 5_1:-54531783 | Msa0737350:CDS |
| CTTGAGAATCAAGTAAAACA+TGG | 0.599048 | 5_1:+54532073 | None:intergenic |
| CTTCCTAGTAGATTTACCCA+AGG | 0.604663 | 5_1:-54531980 | Msa0737350:CDS |
| CTAATAGAGAAACCAATCAT+GGG | 0.606619 | 5_1:-54532204 | Msa0737350:exon |
| GGGTAGCGGTGTTGATGCGG+CGG | 0.614914 | 5_1:-54531677 | Msa0737350:CDS |
| ATAAGGAACGTGGATGCTAA+GGG | 0.617148 | 5_1:-54531904 | Msa0737350:CDS |
| GCCCTTTGATGGGTCCATGA+GGG | 0.621686 | 5_1:-54531794 | Msa0737350:CDS |
| CGGCTAAACCGAAAGCCTCG+TGG | 0.624658 | 5_1:-54531634 | Msa0737350:CDS |
| CTAGGAGGGTACGTTCTAGT+GGG | 0.625082 | 5_1:-54531927 | Msa0737350:CDS |
| GTTGATGCGGCGGAGCATGA+CGG | 0.634118 | 5_1:-54531667 | Msa0737350:CDS |
| GAGTAATGATGGGTCTGAGG+TGG | 0.637797 | 5_1:-54531725 | Msa0737350:CDS |
| AGAGAGTAATGATGGGTCTG+AGG | 0.645019 | 5_1:-54531728 | Msa0737350:CDS |
| TGATGGAAGAGAGTAATGAT+GGG | 0.646933 | 5_1:-54531735 | Msa0737350:CDS |
| TATGGGTAGCGGTGTTGATG+CGG | 0.674432 | 5_1:-54531680 | Msa0737350:CDS |
| TTCTAGTGGGATAAGGAACG+TGG | 0.684266 | 5_1:-54531914 | Msa0737350:CDS |
| GCTAAACCGAAAGCCTCGTG+GGG | 0.689080 | 5_1:-54531632 | Msa0737350:intron |
| TGTACATTCTAACCATCATG+CGG | 0.714217 | 5_1:+54529263 | None:intergenic |
| ACGTACCCTCCTAGGTAACG+AGG | 0.744483 | 5_1:+54531936 | None:intergenic |
| ATACTTATACATACCCCACG+AGG | 0.764323 | 5_1:+54531619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATATATATATATATT+GGG | + | chr5_1:54529165-54529184 | None:intergenic | 0.0% |
| !!! | CATAAGATTTTAAATAAATA+AGG | + | chr5_1:54530137-54530156 | None:intergenic | 10.0% |
| !!! | TGATTTTTTTTTTTTTTGAA+AGG | + | chr5_1:54530591-54530610 | None:intergenic | 10.0% |
| !!! | AAAGTATTATAAAAAATTAG+AGG | + | chr5_1:54530822-54530841 | None:intergenic | 10.0% |
| !! | ATTGTAAAAAAAATTATTGA+AGG | - | chr5_1:54531084-54531103 | Msa0737350:intron | 10.0% |
| !! | TTGTAAAAAAAATTATTGAA+GGG | - | chr5_1:54531085-54531104 | Msa0737350:intron | 10.0% |
| !!! | TCTATATTTTAATACTTAAT+TGG | - | chr5_1:54531269-54531288 | Msa0737350:intron | 10.0% |
| !!! | TTTAATAAAGGTTTTATTTT+TGG | - | chr5_1:54531367-54531386 | Msa0737350:intron | 10.0% |
| !!! | TTTTGTTGTTATTATTATCT+TGG | - | chr5_1:54529901-54529920 | Msa0737350:intron | 15.0% |
| !! | ACTACTCATTATATATTTAA+GGG | + | chr5_1:54531409-54531428 | None:intergenic | 15.0% |
| !! | AACTACTCATTATATATTTA+AGG | + | chr5_1:54531410-54531429 | None:intergenic | 15.0% |
| !!! | AAAACTTATATAGGATATTT+TGG | - | chr5_1:54531818-54531837 | Msa0737350:CDS | 15.0% |
| !! | TATATATATTGGGATTGTTA+TGG | + | chr5_1:54529155-54529174 | None:intergenic | 20.0% |
| !! | AAGATTATGAGTTTGTATAT+GGG | - | chr5_1:54529782-54529801 | Msa0737350:intron | 20.0% |
| !! | AAAATAACATTCTTTCAAAG+TGG | - | chr5_1:54530194-54530213 | Msa0737350:intron | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | - | chr5_1:54530527-54530546 | Msa0737350:intron | 20.0% |
| !! | AACCATATATAATAGACTTT+AGG | - | chr5_1:54530614-54530633 | Msa0737350:intron | 20.0% |
| !! | AACCTAAAGTCTATTATATA+TGG | + | chr5_1:54530619-54530638 | None:intergenic | 20.0% |
| !!! | CTTAATTTTTTGTTGTACTT+GGG | + | chr5_1:54530729-54530748 | None:intergenic | 20.0% |
| !!! | ACTTAATTTTTTGTTGTACT+TGG | + | chr5_1:54530730-54530749 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAGGAAAGACTT+AGG | + | chr5_1:54530858-54530877 | None:intergenic | 20.0% |
| !! | TGTTCGGTAAAAAAAAAAAA+AGG | + | chr5_1:54530869-54530888 | None:intergenic | 20.0% |
| !! | AGTAAGAAGAGTAAATTAAA+TGG | + | chr5_1:54530897-54530916 | None:intergenic | 20.0% |
| !!! | AAGACTTTGGATTTTAATAA+AGG | - | chr5_1:54531355-54531374 | Msa0737350:intron | 20.0% |
| !! | TAATTTCGCTACATTAAAAT+TGG | - | chr5_1:54531458-54531477 | Msa0737350:intron | 20.0% |
| !!! | CATATATTGATTGCATTTTA+AGG | + | chr5_1:54531529-54531548 | None:intergenic | 20.0% |
| !! | TTGCACAATAAAACTTATAT+AGG | - | chr5_1:54531809-54531828 | Msa0737350:CDS | 20.0% |
| !!! | GTGTAGTTTTTGAAAAATTA+CGG | + | chr5_1:54531938-54531957 | None:intergenic | 20.0% |
| !!! | AATTCATTAACACAATTTTC+TGG | + | chr5_1:54532076-54532095 | None:intergenic | 20.0% |
| !! | CTAAAAAAAAAAAACCTAAG+AGG | + | chr5_1:54532194-54532213 | None:intergenic | 20.0% |
| !! | ATTTTTGTGTTTGGTTGATT+GGG | + | chr5_1:54529218-54529237 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTTTGGTTGAT+TGG | + | chr5_1:54529219-54529238 | None:intergenic | 25.0% |
| !!! | TGGTTTTGTATTTTTGTGTT+TGG | + | chr5_1:54529227-54529246 | None:intergenic | 25.0% |
| !! | TATTGGAGTTTTTACTTTGA+AGG | + | chr5_1:54529354-54529373 | None:intergenic | 25.0% |
| !! | ACTAGGAAGTAAATTTTCTT+GGG | + | chr5_1:54529488-54529507 | None:intergenic | 25.0% |
| !! | TACTAGGAAGTAAATTTTCT+TGG | + | chr5_1:54529489-54529508 | None:intergenic | 25.0% |
| ! | GAAGATTATGAGTTTGTATA+TGG | - | chr5_1:54529781-54529800 | Msa0737350:intron | 25.0% |
| ! | TTGTTTAACATATGTCCTTA+GGG | - | chr5_1:54530095-54530114 | Msa0737350:intron | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr5_1:54530540-54530559 | Msa0737350:intron | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr5_1:54530541-54530560 | Msa0737350:intron | 25.0% |
| !!! | AAATTAAATGGAGAAGTGTT+CGG | + | chr5_1:54530885-54530904 | None:intergenic | 25.0% |
| ! | TTCATGTTAGAATTCGAATT+TGG | - | chr5_1:54531128-54531147 | Msa0737350:intron | 25.0% |
| ! | TCATGTTAGAATTCGAATTT+GGG | - | chr5_1:54531129-54531148 | Msa0737350:intron | 25.0% |
| !! | ATTTTACTTGCTTCAATGTT+AGG | + | chr5_1:54531605-54531624 | None:intergenic | 25.0% |
| !!! | AGTTTTTGAAAAATTACGGT+TGG | + | chr5_1:54531934-54531953 | None:intergenic | 25.0% |
| ! | GCACTTTAGTATCATAATTA+TGG | + | chr5_1:54531970-54531989 | None:intergenic | 25.0% |
| !!! | AACACAATTTTCTGGAAAAA+TGG | + | chr5_1:54532068-54532087 | None:intergenic | 25.0% |
| ! | ATATATGATCGATCTTCTAT+AGG | + | chr5_1:54532360-54532379 | None:intergenic | 25.0% |
| !! | ATATATGTAGTGCTTGATTT+TGG | - | chr5_1:54532374-54532393 | Msa0737350:five_prime_UTR | 25.0% |
| AGTAACAAGAAACAAGTTAG+AGG | + | chr5_1:54529131-54529150 | None:intergenic | 30.0% | |
| CTAATAGAGAAACCAATCAT+GGG | - | chr5_1:54529275-54529294 | Msa0737350:three_prime_UTR | 30.0% | |
| !!! | AGCTTTTTTGCTTTTTCCTA+TGG | + | chr5_1:54529306-54529325 | None:intergenic | 30.0% |
| GCTAAGATTATGAAGATAGA+TGG | - | chr5_1:54529323-54529342 | Msa0737350:CDS | 30.0% | |
| ACAACTTCGTTTGATGTTAT+TGG | + | chr5_1:54529371-54529390 | None:intergenic | 30.0% | |
| GAATCAAGTAAAACATGGTT+GGG | + | chr5_1:54529404-54529423 | None:intergenic | 30.0% | |
| AGAATCAAGTAAAACATGGT+TGG | + | chr5_1:54529405-54529424 | None:intergenic | 30.0% | |
| CTTGAGAATCAAGTAAAACA+TGG | + | chr5_1:54529409-54529428 | None:intergenic | 30.0% | |
| !!! | TAACGAGGTTTTTTCATCTT+CGG | + | chr5_1:54529531-54529550 | None:intergenic | 30.0% |
| CACTAACGAAATATCTGAAA+CGG | + | chr5_1:54529633-54529652 | None:intergenic | 30.0% | |
| AAACCACCATCATCAAATTT+GGG | - | chr5_1:54529653-54529672 | Msa0737350:intron | 30.0% | |
| !! | AATATTAACTTGTGCCCTTA+AGG | - | chr5_1:54529956-54529975 | Msa0737350:intron | 30.0% |
| !! | CACTAAAGTATTTCCACTTT+TGG | + | chr5_1:54529996-54530015 | None:intergenic | 30.0% |
| GTTGTTTAACATATGTCCTT+AGG | - | chr5_1:54530094-54530113 | Msa0737350:intron | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr5_1:54530337-54530356 | None:intergenic | 30.0% | |
| AATATGAGGAAAAGATAAGG+TGG | + | chr5_1:54530671-54530690 | None:intergenic | 30.0% | |
| GAGAATATGAGGAAAAGATA+AGG | + | chr5_1:54530674-54530693 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTTGTACTTGGGAT+GGG | + | chr5_1:54530724-54530743 | None:intergenic | 30.0% |
| !!! | ATTTTTTGTTGTACTTGGGA+TGG | + | chr5_1:54530725-54530744 | None:intergenic | 30.0% |
| GTAGAAAAATTGATAGAGAG+CGG | + | chr5_1:54530965-54530984 | None:intergenic | 30.0% | |
| GTGATAAGACTATACATGAT+AGG | + | chr5_1:54531033-54531052 | None:intergenic | 30.0% | |
| AATTATTGAAGGGTAACACT+TGG | - | chr5_1:54531095-54531114 | Msa0737350:intron | 30.0% | |
| GGGATTTGAACTTAATTACT+TGG | - | chr5_1:54531212-54531231 | Msa0737350:intron | 30.0% | |
| ! | ATAGAAGCATAACAAGACTT+TGG | - | chr5_1:54531342-54531361 | Msa0737350:intron | 30.0% |
| GCAATCAATATATGAAGTAG+AGG | - | chr5_1:54531535-54531554 | Msa0737350:intron | 30.0% | |
| ! | ATGCTATGTGAAAAGGATTT+TGG | - | chr5_1:54531654-54531673 | Msa0737350:CDS | 30.0% |
| AAACTGTAATTGTTCTCTAG+CGG | + | chr5_1:54531700-54531719 | None:intergenic | 30.0% | |
| AATGGCTTAGTAGCTAAAAT+AGG | + | chr5_1:54532050-54532069 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAGTACCGCATGA+TGG | - | chr5_1:54532204-54532223 | Msa0737350:exon | 30.0% |
| ACAAGAAACAAGTTAGAGGT+TGG | + | chr5_1:54529127-54529146 | None:intergenic | 35.0% | |
| TCTTGTCTTGTGTTTCTTTG+TGG | + | chr5_1:54529247-54529266 | None:intergenic | 35.0% | |
| !! | CCATGATTGGTTTCTCTATT+AGG | + | chr5_1:54529277-54529296 | None:intergenic | 35.0% |
| CCTAATAGAGAAACCAATCA+TGG | - | chr5_1:54529274-54529293 | Msa0737350:three_prime_UTR | 35.0% | |
| TCTCAAGCAGTAAAACACTT+CGG | - | chr5_1:54529422-54529441 | Msa0737350:intron | 35.0% | |
| !! | AGTTCTTGATTTGGCTCTAA+GGG | + | chr5_1:54529461-54529480 | None:intergenic | 35.0% |
| !!! | AACGAGGTTTTTTCATCTTC+GGG | + | chr5_1:54529530-54529549 | None:intergenic | 35.0% |
| ATGAAAAAACCTCGTTACCT+AGG | - | chr5_1:54529534-54529553 | Msa0737350:intron | 35.0% | |
| GAAACCACCATCATCAAATT+TGG | - | chr5_1:54529652-54529671 | Msa0737350:intron | 35.0% | |
| TCAAAGCCCAAATTTGATGA+TGG | + | chr5_1:54529662-54529681 | None:intergenic | 35.0% | |
| ! | CATCAAATTTGGGCTTTGAT+AGG | - | chr5_1:54529663-54529682 | Msa0737350:intron | 35.0% |
| ! | TTCCATCAACTTTTCCAACT+GGG | + | chr5_1:54529732-54529751 | None:intergenic | 35.0% |
| TTGATGGAAGAGAGTAATGA+TGG | - | chr5_1:54529743-54529762 | Msa0737350:intron | 35.0% | |
| TGATGGAAGAGAGTAATGAT+GGG | - | chr5_1:54529744-54529763 | Msa0737350:intron | 35.0% | |
| ATGAGTTTGTATATGGGTAG+CGG | - | chr5_1:54529788-54529807 | Msa0737350:intron | 35.0% | |
| TTGAAATCCGCAACAAGAAA+AGG | + | chr5_1:54530296-54530315 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr5_1:54530338-54530357 | None:intergenic | 35.0% | |
| ! | ATCTTTTCCTCATATTCTCG+TGG | - | chr5_1:54530675-54530694 | Msa0737350:intron | 35.0% |
| !! | TTTTTGTTGTACTTGGGATG+GGG | + | chr5_1:54530723-54530742 | None:intergenic | 35.0% |
| ! | GAGAGCGGATTTAAATGATT+TGG | + | chr5_1:54530950-54530969 | None:intergenic | 35.0% |
| TTGAGCTCTTACTTTCTTGT+AGG | - | chr5_1:54531190-54531209 | Msa0737350:intron | 35.0% | |
| TGAGCTCTTACTTTCTTGTA+GGG | - | chr5_1:54531191-54531210 | Msa0737350:intron | 35.0% | |
| GTCAAACATGCTATGTGAAA+AGG | - | chr5_1:54531647-54531666 | Msa0737350:CDS | 35.0% | |
| ! | CTATGTGAAAAGGATTTTGG+AGG | - | chr5_1:54531657-54531676 | Msa0737350:CDS | 35.0% |
| AATACTCGTCGTTTACTTGT+TGG | - | chr5_1:54531784-54531803 | Msa0737350:CDS | 35.0% | |
| !! | TTTTTGCCACTTGCCAAATT+GGG | + | chr5_1:54531856-54531875 | None:intergenic | 35.0% |
| !!! | TTTTTTGCCACTTGCCAAAT+TGG | + | chr5_1:54531857-54531876 | None:intergenic | 35.0% |
| GACTTTCTTCAATCTCCATT+GGG | + | chr5_1:54532143-54532162 | None:intergenic | 35.0% | |
| CCTAAGAGGAAATACTATTG+AGG | + | chr5_1:54532180-54532199 | None:intergenic | 35.0% | |
| CCTCAATAGTATTTCCTCTT+AGG | - | chr5_1:54532177-54532196 | Msa0737350:CDS | 35.0% | |
| TGTACATTCTAACCATCATG+CGG | + | chr5_1:54532219-54532238 | None:intergenic | 35.0% | |
| !!! | GTAGTGCTTGATTTTGGTTA+CGG | - | chr5_1:54532380-54532399 | Msa0737350:five_prime_UTR | 35.0% |
| !! | AGTGTGGGTTATGAGTTTTG+TGG | + | chr5_1:54529191-54529210 | None:intergenic | 40.0% |
| CTCAAGCAGTAAAACACTTC+GGG | - | chr5_1:54529423-54529442 | Msa0737350:intron | 40.0% | |
| AGTAAAACACTTCGGGCTTA+GGG | - | chr5_1:54529430-54529449 | Msa0737350:intron | 40.0% | |
| !! | GAGTTCTTGATTTGGCTCTA+AGG | + | chr5_1:54529462-54529481 | None:intergenic | 40.0% |
| TTGGGCTTGAGTTCTTGATT+TGG | + | chr5_1:54529470-54529489 | None:intergenic | 40.0% | |
| CTTCCTAGTAGATTTACCCA+AGG | - | chr5_1:54529499-54529518 | Msa0737350:intron | 40.0% | |
| GAACCTTGGGTAAATCTACT+AGG | + | chr5_1:54529505-54529524 | None:intergenic | 40.0% | |
| AAAAAACCTCGTTACCTAGG+AGG | - | chr5_1:54529537-54529556 | Msa0737350:intron | 40.0% | |
| AAAAACCTCGTTACCTAGGA+GGG | - | chr5_1:54529538-54529557 | Msa0737350:intron | 40.0% | |
| ATAAGGAACGTGGATGCTAA+GGG | - | chr5_1:54529575-54529594 | Msa0737350:intron | 40.0% | |
| !! | AAGCCCAAATTTGATGATGG+TGG | + | chr5_1:54529659-54529678 | None:intergenic | 40.0% |
| ! | AACTTTTCCAACTGGGCTTT+AGG | + | chr5_1:54529725-54529744 | None:intergenic | 40.0% |
| ! | CTTCCATCAACTTTTCCAAC+TGG | + | chr5_1:54529733-54529752 | None:intergenic | 40.0% |
| ATACTTATACATACCCCACG+AGG | + | chr5_1:54529863-54529882 | None:intergenic | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr5_1:54530113-54530132 | None:intergenic | 40.0% |
| TTCGTTGTGGCGTTTCATAA+TGG | - | chr5_1:54530225-54530244 | Msa0737350:intron | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr5_1:54530333-54530352 | None:intergenic | 40.0% | |
| GTCAAGTAATATGGGACAGA+GGG | - | chr5_1:54530549-54530568 | Msa0737350:intron | 40.0% | |
| GAGCTCTTACTTTCTTGTAG+GGG | - | chr5_1:54531192-54531211 | Msa0737350:intron | 40.0% | |
| GCGTATACAAATGCCCAATT+TGG | - | chr5_1:54531840-54531859 | Msa0737350:CDS | 40.0% | |
| CGATGAACATGTGAGAATCA+CGG | - | chr5_1:54531905-54531924 | Msa0737350:CDS | 40.0% | |
| GATGAACATGTGAGAATCAC+GGG | - | chr5_1:54531906-54531925 | Msa0737350:CDS | 40.0% | |
| ATGAACATGTGAGAATCACG+GGG | - | chr5_1:54531907-54531926 | Msa0737350:CDS | 40.0% | |
| GGACTTTCTTCAATCTCCAT+TGG | + | chr5_1:54532144-54532163 | None:intergenic | 40.0% | |
| ! | GGTTGATTGGGTGAAAGTGT+GGG | + | chr5_1:54529206-54529225 | None:intergenic | 45.0% |
| TGGTTGATTGGGTGAAAGTG+TGG | + | chr5_1:54529207-54529226 | None:intergenic | 45.0% | |
| CCTATGGTGTTTCCCATGAT+TGG | + | chr5_1:54529290-54529309 | None:intergenic | 45.0% | |
| CCAATCATGGGAAACACCAT+AGG | - | chr5_1:54529287-54529306 | Msa0737350:three_prime_UTR | 45.0% | |
| CAGTAAAACACTTCGGGCTT+AGG | - | chr5_1:54529429-54529448 | Msa0737350:intron | 45.0% | |
| TTCTAGTGGGATAAGGAACG+TGG | - | chr5_1:54529565-54529584 | Msa0737350:intron | 45.0% | |
| GATAAGGAACGTGGATGCTA+AGG | - | chr5_1:54529574-54529593 | Msa0737350:intron | 45.0% | |
| GCTTTGATAGGCCCTTTGAT+GGG | - | chr5_1:54529675-54529694 | Msa0737350:intron | 45.0% | |
| AGCCCAGTTGGAAAAGTTGA+TGG | - | chr5_1:54529727-54529746 | Msa0737350:intron | 45.0% | |
| !! | AGAGAGTAATGATGGGTCTG+AGG | - | chr5_1:54529751-54529770 | Msa0737350:intron | 45.0% |
| ! | AGCATGACGGTGATGTTTTG+CGG | - | chr5_1:54529825-54529844 | Msa0737350:intron | 45.0% |
| !! | CTCGTTAACTTGCGCCTTAA+GGG | + | chr5_1:54529973-54529992 | None:intergenic | 45.0% |
| GCAAGTTAACGAGCCAAAAG+TGG | - | chr5_1:54529980-54529999 | Msa0737350:intron | 45.0% | |
| AGTGGCTTGAAGTTTCGTTG+TGG | - | chr5_1:54530212-54530231 | Msa0737350:intron | 45.0% | |
| GACTTGCGTGAAATTGCATG+TGG | - | chr5_1:54530255-54530274 | Msa0737350:intron | 45.0% | |
| TTGCATGTGGTTGCAAAGAC+AGG | - | chr5_1:54530268-54530287 | Msa0737350:intron | 45.0% | |
| TGCATGTGGTTGCAAAGACA+GGG | - | chr5_1:54530269-54530288 | Msa0737350:intron | 45.0% | |
| ! | ACAGGGTCCTTTTCTTGTTG+CGG | - | chr5_1:54530286-54530305 | Msa0737350:intron | 45.0% |
| CATACGTGACAGAGTCAACT+AGG | + | chr5_1:54530351-54530370 | None:intergenic | 45.0% | |
| GGTCAAGTAATATGGGACAG+AGG | - | chr5_1:54530548-54530567 | Msa0737350:intron | 45.0% | |
| CCAATTGCCACGAGAATATG+AGG | + | chr5_1:54530685-54530704 | None:intergenic | 45.0% | |
| CCTCATATTCTCGTGGCAAT+TGG | - | chr5_1:54530682-54530701 | Msa0737350:intron | 45.0% | |
| ATTCTCGTGGCAATTGGCAA+AGG | - | chr5_1:54530688-54530707 | Msa0737350:intron | 45.0% | |
| CAAATGCCCAATTTGGCAAG+TGG | - | chr5_1:54531847-54531866 | Msa0737350:CDS | 45.0% | |
| !! | ACGAGTGAGTTTTAGCCCAA+TGG | - | chr5_1:54532125-54532144 | Msa0737350:CDS | 45.0% |
| TATTGAGGAGCTGCTTCAAC+AGG | + | chr5_1:54532165-54532184 | None:intergenic | 45.0% | |
| !! | GTATTTATATATATATATAT+TGG | + | chr5_1:54529166-54529185 | None:intergenic | 5.0% |
| !!! | ATAAGATTTTAAATAAATAA+GGG | + | chr5_1:54530136-54530155 | None:intergenic | 5.0% |
| !!! | ATAAAAAATAAATAAACTTT+TGG | - | chr5_1:54530645-54530664 | Msa0737350:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAAAAAG+AGG | - | chr5_1:54531872-54531891 | Msa0737350:CDS | 5.0% |
| TCATCTTCGGGCTGAACCTT+GGG | + | chr5_1:54529518-54529537 | None:intergenic | 50.0% | |
| TTCATCTTCGGGCTGAACCT+TGG | + | chr5_1:54529519-54529538 | None:intergenic | 50.0% | |
| ! | CTAGGAGGGTACGTTCTAGT+GGG | - | chr5_1:54529552-54529571 | Msa0737350:intron | 50.0% |
| GGGTACGTTCTAGTGGGATA+AGG | - | chr5_1:54529558-54529577 | Msa0737350:intron | 50.0% | |
| ! | GGCTTTGATAGGCCCTTTGA+TGG | - | chr5_1:54529674-54529693 | Msa0737350:intron | 50.0% |
| ACCCTCATGGACCCATCAAA+GGG | + | chr5_1:54529689-54529708 | None:intergenic | 50.0% | |
| AAGCCTCATCTTCACCCTCA+TGG | + | chr5_1:54529702-54529721 | None:intergenic | 50.0% | |
| !! | GAGTAATGATGGGTCTGAGG+TGG | - | chr5_1:54529754-54529773 | Msa0737350:intron | 50.0% |
| !! | TAATGATGGGTCTGAGGTGG+CGG | - | chr5_1:54529757-54529776 | Msa0737350:intron | 50.0% |
| !! | TATGGGTAGCGGTGTTGATG+CGG | - | chr5_1:54529799-54529818 | Msa0737350:intron | 50.0% |
| TACATACCCCACGAGGCTTT+CGG | + | chr5_1:54529856-54529875 | None:intergenic | 50.0% | |
| !! | GCTCGTTAACTTGCGCCTTA+AGG | + | chr5_1:54529974-54529993 | None:intergenic | 50.0% |
| GGTCAAGTAATATGGGACGG+AGG | + | chr5_1:54530330-54530349 | None:intergenic | 50.0% | |
| ACGTACCCTCCTAGGTAACG+AGG | + | chr5_1:54529546-54529565 | None:intergenic | 55.0% | |
| CCACTAGAACGTACCCTCCT+AGG | + | chr5_1:54529554-54529573 | None:intergenic | 55.0% | |
| ! | CCTAGGAGGGTACGTTCTAG+TGG | - | chr5_1:54529551-54529570 | Msa0737350:intron | 55.0% |
| ! | GCCCTTTGATGGGTCCATGA+GGG | - | chr5_1:54529685-54529704 | Msa0737350:intron | 55.0% |
| CACCCTCATGGACCCATCAA+AGG | + | chr5_1:54529690-54529709 | None:intergenic | 55.0% | |
| GGTCCATGAGGGTGAAGATG+AGG | - | chr5_1:54529696-54529715 | Msa0737350:intron | 55.0% | |
| GAGGCTTCCTAAAGCCCAGT+TGG | - | chr5_1:54529715-54529734 | Msa0737350:intron | 55.0% | |
| GGCTAAACCGAAAGCCTCGT+GGG | - | chr5_1:54529846-54529865 | Msa0737350:intron | 55.0% | |
| GCTAAACCGAAAGCCTCGTG+GGG | - | chr5_1:54529847-54529866 | Msa0737350:intron | 55.0% | |
| ! | GGCCCTTTGATGGGTCCATG+AGG | - | chr5_1:54529684-54529703 | Msa0737350:intron | 60.0% |
| GTTGATGCGGCGGAGCATGA+CGG | - | chr5_1:54529812-54529831 | Msa0737350:intron | 60.0% | |
| CGGCTAAACCGAAAGCCTCG+TGG | - | chr5_1:54529845-54529864 | Msa0737350:intron | 60.0% | |
| !! | GGGTAGCGGTGTTGATGCGG+CGG | - | chr5_1:54529802-54529821 | Msa0737350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54529098 | 54532403 | 54529098 | ID=Msa0737350;Name=Msa0737350 |
| chr5_1 | mRNA | 54529098 | 54532403 | 54529098 | ID=Msa0737350-mRNA-1;Parent=Msa0737350;Name=Msa0737350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=195|1|1|1|1|1|2|218|212 |
| chr5_1 | exon | 54529098 | 54529378 | 54529098 | ID=Msa0737350-mRNA-1:exon:15300;Parent=Msa0737350-mRNA-1 |
| chr5_1 | exon | 54531633 | 54532403 | 54531633 | ID=Msa0737350-mRNA-1:exon:15299;Parent=Msa0737350-mRNA-1 |
| chr5_1 | five_prime_UTR | 54532209 | 54532403 | 54532209 | ID=Msa0737350-mRNA-1:five_prime_utr;Parent=Msa0737350-mRNA-1 |
| chr5_1 | CDS | 54531633 | 54532208 | 54531633 | ID=Msa0737350-mRNA-1:cds;Parent=Msa0737350-mRNA-1 |
| chr5_1 | CDS | 54529316 | 54529378 | 54529316 | ID=Msa0737350-mRNA-1:cds;Parent=Msa0737350-mRNA-1 |
| chr5_1 | three_prime_UTR | 54529098 | 54529315 | 54529098 | ID=Msa0737350-mRNA-1:three_prime_utr;Parent=Msa0737350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
