AlfalfaGEDB | Msa0779090

M. sativa cultivar zhongmu-4 / Msa0779090

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF14009.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779090	sp\|Q6NLC8\|Y1648_ARATH	57.062	177	67	6	1	170	1	175	3.57e-58	186

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779090	G7KBN9	97.170	212	5	1	1	212	1	211	2.56e-145	412

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015460	Msa0779090	0.831483	1.627043e-55	-8.615850e-47
Msa0015480	Msa0779090	0.806579	7.680943e-50	-8.615850e-47
Msa0038870	Msa0779090	0.800575	1.351626e-48	-8.615850e-47
Msa0051450	Msa0779090	0.812603	3.901929e-51	-8.615850e-47
Msa0064700	Msa0779090	0.803965	2.709295e-49	-8.615850e-47
Msa0081650	Msa0779090	0.804262	2.350759e-49	-8.615850e-47
Msa0090390	Msa0779090	0.822082	2.865163e-53	-8.615850e-47
Msa0101830	Msa0779090	0.801617	8.275232e-49	-8.615850e-47
Msa0109590	Msa0779090	0.835348	1.767817e-56	-8.615850e-47
Msa0614510	Msa0779090	0.803296	3.730101e-49	-8.615850e-47
Msa0618200	Msa0779090	-0.802054	6.730374e-49	-8.615850e-47
Msa0620620	Msa0779090	0.838976	2.087815e-57	-8.615850e-47
Msa0626220	Msa0779090	0.802959	4.379954e-49	-8.615850e-47
Msa0689420	Msa0779090	0.801433	9.023999e-49	-8.615850e-47
Msa0715410	Msa0779090	0.816464	5.456483e-52	-8.615850e-47
Msa0737350	Msa0779090	0.881836	1.722864e-70	-8.615850e-47
Msa0738440	Msa0779090	0.813672	2.273728e-51	-8.615850e-47
Msa0748730	Msa0779090	0.809056	2.284318e-50	-8.615850e-47
Msa0756530	Msa0779090	0.806242	9.045555e-50	-8.615850e-47
Msa0777320	Msa0779090	0.802745	4.848731e-49	-8.615850e-47
Msa0779090	Msa0816510	0.863298	2.751555e-64	-8.615850e-47
Msa0779090	Msa0816540	0.861355	1.087523e-63	-8.615850e-47
Msa0779090	Msa0817650	0.805768	1.138139e-49	-8.615850e-47
Msa0779090	Msa0818170	0.829713	4.412841e-55	-8.615850e-47
Msa0779090	Msa0826760	0.826872	2.136730e-54	-8.615850e-47
Msa0779090	Msa0832090	0.802151	6.429070e-49	-8.615850e-47
Msa0779090	Msa0837780	0.801872	7.335476e-49	-8.615850e-47
Msa0779090	Msa0856710	0.901813	1.831961e-78	-8.615850e-47
Msa0779090	Msa0880040	0.811793	5.861137e-51	-8.615850e-47
Msa0779090	Msa0890550	0.800303	1.535674e-48	-8.615850e-47
Msa0779090	Msa0892570	0.801622	8.254310e-49	-8.615850e-47
Msa0779090	Msa0895310	0.803367	3.606374e-49	-8.615850e-47
Msa0779090	Msa0905380	0.808998	2.351426e-50	-8.615850e-47
Msa0779090	Msa0942550	-0.807342	5.296062e-50	-8.615850e-47
Msa0779090	Msa0945120	0.820394	7.020535e-53	-8.615850e-47
Msa0779090	Msa0960740	0.806102	9.681669e-50	-8.615850e-47
Msa0779090	Msa0994370	0.807300	5.406951e-50	-8.615850e-47
Msa0779090	Msa0994390	0.819882	9.196987e-53	-8.615850e-47
Msa0779090	Msa1000930	0.800141	1.656522e-48	-8.615850e-47
Msa0779090	Msa1087990	0.803122	4.053180e-49	-8.615850e-47
Msa0779090	Msa1190970	0.819116	1.374797e-52	-8.615850e-47
Msa0779090	Msa1204630	0.812032	5.199796e-51	-8.615850e-47
Msa0779090	Msa1206310	0.808041	3.763794e-50	-8.615850e-47
Msa0779090	Msa1206360	0.811303	7.488889e-51	-8.615850e-47
Msa0779090	Msa1215920	0.810186	1.306175e-50	-8.615850e-47
Msa0779090	Msa1244640	0.808026	3.791402e-50	-8.615850e-47
Msa0779090	Msa1276340	0.802889	4.528714e-49	-8.615850e-47
Msa0779090	Msa1293590	0.824501	7.800800e-54	-8.615850e-47
Msa0779090	Msa1305350	0.806934	6.463572e-50	-8.615850e-47
Msa0779090	Msa1335710	0.833110	6.438573e-56	-8.615850e-47
Msa0779090	Msa1376130	0.836715	7.953903e-57	-8.615850e-47
Msa0779090	Msa1377570	0.824769	6.743919e-54	-8.615850e-47
Msa0779090	Msa1382790	0.809015	2.331020e-50	-8.615850e-47
Msa0779090	Msa1412930	-0.800826	1.201090e-48	-8.615850e-47
Msa0779090	Msa1437210	0.804415	2.183992e-49	-8.615850e-47
Msa0779090	Msa1439710	0.818598	1.803404e-52	-8.615850e-47
Msa0779090	Msa1443610	0.821403	4.112695e-53	-8.615850e-47
Msa0779090	Msa1448770	0.817027	4.080352e-52	-8.615850e-47
Msa0779090	Msa1462930	0.814740	1.320878e-51	-8.615850e-47
Msa0137570	Msa0779090	0.808726	2.687933e-50	-8.615850e-47
Msa0137870	Msa0779090	0.810699	1.012498e-50	-8.615850e-47
Msa0155880	Msa0779090	0.828858	7.114776e-55	-8.615850e-47
Msa0156700	Msa0779090	0.800648	1.305924e-48	-8.615850e-47
Msa0182570	Msa0779090	0.803386	3.573928e-49	-8.615850e-47
Msa0233370	Msa0779090	0.816298	5.942312e-52	-8.615850e-47
Msa0378380	Msa0779090	0.820726	5.890342e-53	-8.615850e-47
Msa0385490	Msa0779090	0.801090	1.060813e-48	-8.615850e-47
Msa0387050	Msa0779090	0.805411	1.352355e-49	-8.615850e-47
Msa0387370	Msa0779090	0.806465	8.119231e-50	-8.615850e-47
Msa0394340	Msa0779090	0.805573	1.250349e-49	-8.615850e-47
Msa0417330	Msa0779090	0.806727	7.146967e-50	-8.615850e-47
Msa0427980	Msa0779090	0.807624	4.615765e-50	-8.615850e-47
Msa0428050	Msa0779090	0.801556	8.517062e-49	-8.615850e-47
Msa0433410	Msa0779090	-0.812494	4.121782e-51	-8.615850e-47
Msa0437150	Msa0779090	0.802838	4.640422e-49	-8.615850e-47
Msa0438040	Msa0779090	0.815516	8.882676e-52	-8.615850e-47
Msa0468320	Msa0779090	0.810058	1.391967e-50	-8.615850e-47
Msa0472960	Msa0779090	-0.813945	1.979860e-51	-8.615850e-47
Msa0474390	Msa0779090	0.804627	1.972957e-49	-8.615850e-47
Msa0239800	Msa0779090	0.804273	2.338175e-49	-8.615850e-47
Msa0290760	Msa0779090	0.808576	2.893303e-50	-8.615850e-47
Msa0292170	Msa0779090	0.801612	8.292449e-49	-8.615850e-47
Msa0299060	Msa0779090	0.800499	1.400349e-48	-8.615850e-47
Msa0317510	Msa0779090	0.804857	1.766332e-49	-8.615850e-47
Msa0485490	Msa0779090	0.817038	4.056778e-52	-8.615850e-47
Msa0489610	Msa0779090	0.812822	3.494417e-51	-8.615850e-47
Msa0512870	Msa0779090	0.804048	2.603838e-49	-8.615850e-47
Msa0518440	Msa0779090	0.801029	1.091849e-48	-8.615850e-47
Msa0518560	Msa0779090	0.807688	4.474005e-50	-8.615850e-47
Msa0524600	Msa0779090	0.806849	6.737508e-50	-8.615850e-47
Msa0541040	Msa0779090	0.824984	6.001408e-54	-8.615850e-47
Msa0565620	Msa0779090	-0.814451	1.530347e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779090	MtrunA17_Chr5g0435091	97.170	212	5	1	1	212	1	211	4.92e-149	412
Msa0779090	MtrunA17_Chr3g0111521	61.261	222	68	6	1	210	1	216	7.72e-80	238
Msa0779090	MtrunA17_Chr1g0160291	48.077	208	92	4	1	200	1	200	3.94e-57	179
Msa0779090	MtrunA17_Chr4g0044361	50.282	177	75	4	1	173	1	168	5.22e-50	161

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779090	AT1G66480.1	57.062	177	67	6	1	170	1	175	3.63e-59	186
Msa0779090	AT5G37840.1	51.196	209	85	5	1	198	1	203	7.47e-58	182
Msa0779090	AT2G01340.1	52.632	171	71	4	1	171	1	161	4.28e-52	167
Msa0779090	AT1G71015.1	50.000	170	76	4	1	170	1	161	9.51e-39	132
Msa0779090	AT1G71015.2	50.000	170	76	4	1	170	1	161	9.51e-39	132

Find 73 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATGATTGGTTTCTCTATT+AGG	0.126642	5_2:+60262900	None:intergenic
GAAGCCACCGCCATCAAATT+TGG	0.176179	5_2:-60262522	Msa0779090:CDS
GTGGTTGTATTTATATATAT+TGG	0.213372	5_2:+60263005	None:intergenic
CCTCAATAGTACTGCCTCTT+AGG	0.217914	5_2:-60260325	Msa0779090:exon
GAAGATTATGAGTTTGTATA+TGG	0.227289	5_2:-60262393	Msa0779090:CDS
TCATCTTCGGGCTCAATCTT+AGG	0.235921	5_2:+60262659	None:intergenic
CCACTAGATCGTACCCTTCT+AGG	0.236490	5_2:+60262623	None:intergenic
CATCAAATTTGGGCTTTGAT+AGG	0.257197	5_2:-60262511	Msa0779090:CDS
CCTATGGTGTTTCCCATGAT+TGG	0.278242	5_2:+60262887	None:intergenic
TGGTTGTATTTATATATATT+GGG	0.301707	5_2:+60263006	None:intergenic
GGCTTTGATAGGCCCTTTGA+TGG	0.319942	5_2:-60262500	Msa0779090:CDS
GAGTTCTTGATTTGGCTCTA+AGG	0.329180	5_2:+60262715	None:intergenic
CAGTAAAACACTTCGGGCTT+AGG	0.337959	5_2:-60262745	Msa0779090:CDS
AAAACAATGGAGAGAGAAAA+AGG	0.360858	5_2:-60260218	Msa0779090:three_prime_UTR
GCTAAGATTATGAAGATAGA+TGG	0.365523	5_2:-60262851	Msa0779090:CDS
CTCAAGCAGTAAAACACTTC+GGG	0.366167	5_2:-60262751	Msa0779090:CDS
TTGGGCTTGAGTTCTTGATT+TGG	0.367392	5_2:+60262707	None:intergenic
GGGTACGATCTAGTGGAATA+AGG	0.370431	5_2:-60262616	Msa0779090:CDS
TATATATATTGGGATTGTTA+TGG	0.371220	5_2:+60263016	None:intergenic
TACATACCCCACGAGGCTTT+CGG	0.379415	5_2:+60262321	None:intergenic
AAGCCACCGCCATCAAATTT+GGG	0.379696	5_2:-60262521	Msa0779090:CDS
ACAACTTCGTTTGATGTTGT+TGG	0.390472	5_2:+60262806	None:intergenic
TCTTGTCTTGTGTTTGTTTG+TGG	0.400237	5_2:+60262930	None:intergenic
TCAACAAAGTTGTCATCAAA+TGG	0.417779	5_2:+60260272	None:intergenic
AGTTCTTGATTTGGCTCTAA+GGG	0.425177	5_2:+60262716	None:intergenic
AGTAAAACACTTCGGGCTTA+GGG	0.449480	5_2:-60262744	Msa0779090:CDS
CTATCAAAGCCCAAATTTGA+TGG	0.455193	5_2:+60262512	None:intergenic
TTGATGGAAGAGAGTAATGA+TGG	0.459985	5_2:-60262431	Msa0779090:CDS
TATTGAGGAGCTGCTTCAAC+AGG	0.462669	5_2:+60260340	None:intergenic
TGGTTGATTGGGTGAAAGTG+TGG	0.471214	5_2:+60262970	None:intergenic
GACTTTCTTCAATCTCCAAT+GGG	0.473989	5_2:+60260362	None:intergenic
CCTAATAGAGAAACCAATCA+TGG	0.475579	5_2:-60262900	Msa0779090:exon
CACTAACGAAATATCTGAAA+CGG	0.477598	5_2:+60262544	None:intergenic
AAGATTATGAGTTTGTATAT+GGG	0.479738	5_2:-60262392	Msa0779090:CDS
GGACTTTCTTCAATCTCCAA+TGG	0.495498	5_2:+60260361	None:intergenic
CACCCTCATGGACCCATCAA+AGG	0.503885	5_2:+60262487	None:intergenic
AATAAGGAACGTGGATGCTA+AGG	0.505115	5_2:-60262600	Msa0779090:CDS
AGAATCTAAGAGAACATGGT+TGG	0.514582	5_2:+60262772	None:intergenic
AAGCCTCATCTTCACCCTCA+TGG	0.515255	5_2:+60262475	None:intergenic
AAGCCCAAATTTGATGGCGG+TGG	0.515542	5_2:+60262518	None:intergenic
CCTAAGAGGCAGTACTATTG+AGG	0.519178	5_2:+60260325	None:intergenic
ACCCTCATGGACCCATCAAA+GGG	0.521258	5_2:+60262488	None:intergenic
GCTTTGATAGGCCCTTTGAT+GGG	0.524979	5_2:-60262499	Msa0779090:CDS
GGTTGATTGGGTGAAAGTGT+GGG	0.533520	5_2:+60262971	None:intergenic
CCTAGAAGGGTACGATCTAG+TGG	0.534238	5_2:-60262623	Msa0779090:CDS
TATGGGTGGCGGTGGTGATG+CGG	0.535186	5_2:-60262375	Msa0779090:CDS
GAATCTAAGAGAACATGGTT+GGG	0.536739	5_2:+60262773	None:intergenic
CTACATATATGATCTGCTAC+AGG	0.540159	5_2:+60259947	None:intergenic
ATTTGTATTCTGTATTGTAG+TGG	0.544055	5_2:-60260023	Msa0779090:three_prime_UTR
GGGTGGCGGTGGTGATGCGG+CGG	0.547156	5_2:-60262372	Msa0779090:CDS
ATTATGAGTTTGTATATGGG+TGG	0.558604	5_2:-60262389	Msa0779090:CDS
GAGGCTTCCTAAAGCCCAGT+TGG	0.560896	5_2:-60262459	Msa0779090:CDS
TCTCAAGCAGTAAAACACTT+CGG	0.563644	5_2:-60262752	Msa0779090:CDS
CTTGAGAATCTAAGAGAACA+TGG	0.563823	5_2:+60262768	None:intergenic
CCAATCATGGGAAACACCAT+AGG	0.564589	5_2:-60262887	Msa0779090:exon
GGCAAAACCGAAAGCCTCGT+GGG	0.575940	5_2:-60262328	Msa0779090:CDS
ATGAGTTTGTATATGGGTGG+CGG	0.586739	5_2:-60262386	Msa0779090:CDS
ATAAGGAACGTGGATGCTAA+GGG	0.588791	5_2:-60262599	Msa0779090:CDS
GGCCCTTTGATGGGTCCATG+AGG	0.590646	5_2:-60262490	Msa0779090:CDS
GGTCCATGAGGGTGAAGATG+AGG	0.594224	5_2:-60262478	Msa0779090:CDS
GAGTAATGATGGGTCTGAAG+TGG	0.600358	5_2:-60262420	Msa0779090:CDS
CTAATAGAGAAACCAATCAT+GGG	0.606619	5_2:-60262899	Msa0779090:exon
TAATGATGGGTCTGAAGTGG+CGG	0.609170	5_2:-60262417	Msa0779090:CDS
GCCCTTTGATGGGTCCATGA+GGG	0.621686	5_2:-60262489	Msa0779090:CDS
CGGCAAAACCGAAAGCCTCG+TGG	0.627272	5_2:-60262329	Msa0779090:CDS
GGTGATGCGGCGGAGCATGA+CGG	0.634118	5_2:-60262362	Msa0779090:CDS
CTGCTACAGGTCAAGCAATG+AGG	0.634852	5_2:+60259960	None:intergenic
TGATGGAAGAGAGTAATGAT+GGG	0.637875	5_2:-60262430	Msa0779090:CDS
AGTTTGTATATGGGTGGCGG+TGG	0.641348	5_2:-60262383	Msa0779090:CDS
GCAAAACCGAAAGCCTCGTG+GGG	0.670575	5_2:-60262327	Msa0779090:intron
ATCTAGTGGAATAAGGAACG+TGG	0.683798	5_2:-60262609	Msa0779090:CDS
TCAAAGCCCAAATTTGATGG+CGG	0.700240	5_2:+60262515	None:intergenic
ATACTTATACATACCCCACG+AGG	0.764323	5_2:+60262314	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACTATTACAAAATATTTAA+AGG	+	chr5_2:60261164-60261183	None:intergenic	10.0%
!!	TGGTTGTATTTATATATATT+GGG	+	chr5_2:60259948-60259967	None:intergenic	15.0%
!!!	TTTTGTTGTTATTATTATCT+TGG	-	chr5_2:60260678-60260697	Msa0779090:intron	15.0%
!!!	TTTTTGAAGGAAATATTTAA+AGG	+	chr5_2:60261135-60261154	None:intergenic	15.0%
!!!	TTAAAGGTTTTTTTTTTTGA+AGG	+	chr5_2:60261148-60261167	None:intergenic	15.0%
!!!	TTTTGTAATAGTTTCTTTTA+TGG	-	chr5_2:60261171-60261190	Msa0779090:intron	15.0%
!!!	ATTTTACTTGCTTAAAAATT+AGG	+	chr5_2:60261972-60261991	None:intergenic	15.0%
!!	TATATATATTGGGATTGTTA+TGG	+	chr5_2:60259938-60259957	None:intergenic	20.0%
!!	GTGGTTGTATTTATATATAT+TGG	+	chr5_2:60259949-60259968	None:intergenic	20.0%
!!!	ACTAAGAAGTAAATTTTCTT+GGG	+	chr5_2:60260265-60260284	None:intergenic	20.0%
!!!	TACTAAGAAGTAAATTTTCT+TGG	+	chr5_2:60260266-60260285	None:intergenic	20.0%
!!	AAGATTATGAGTTTGTATAT+GGG	-	chr5_2:60260559-60260578	Msa0779090:intron	20.0%
!!!	TACTTAATTTTTGGTGTAAT+CGG	+	chr5_2:60261038-60261057	None:intergenic	20.0%
!!	TAAATCAAATGAAGGAAAAT+CGG	+	chr5_2:60261229-60261248	None:intergenic	20.0%
!!	AAGAAGAATAAATCAAATGA+AGG	+	chr5_2:60261237-60261256	None:intergenic	20.0%
!!!	TGAACTCAATTACTTTTTTT+AGG	-	chr5_2:60261545-60261564	Msa0779090:intron	20.0%
!!!	GAACTCAATTACTTTTTTTA+GGG	-	chr5_2:60261546-60261565	Msa0779090:intron	20.0%
!!!	AACTCAATTACTTTTTTTAG+GGG	-	chr5_2:60261547-60261566	Msa0779090:intron	20.0%
!!!	AAGACTTTGGATTTTAATAA+AGG	-	chr5_2:60261708-60261727	Msa0779090:intron	20.0%
!!	ACTACTCACTATATATTTAA+GGG	+	chr5_2:60261762-60261781	None:intergenic	20.0%
!!	AACTACTCACTATATATTTA+AGG	+	chr5_2:60261763-60261782	None:intergenic	20.0%
!!	AAATTTCGCTACATTAAATT+TGG	-	chr5_2:60261811-60261830	Msa0779090:intron	20.0%
!!!	CATATATTGATTGCATTTTA+AGG	+	chr5_2:60261896-60261915	None:intergenic	20.0%
!!!	AAACTTATTAAAGGAGATTT+TGG	-	chr5_2:60262187-60262206	Msa0779090:intron	20.0%
!!!	AATAACATGTAGATTTTGTT+TGG	-	chr5_2:60262280-60262299	Msa0779090:intron	20.0%
!!!	TTAGATTAGTTTCCTATTTT+AGG	-	chr5_2:60262484-60262503	Msa0779090:CDS	20.0%
!!	AATAACTTAGTACCTAAAAT+AGG	+	chr5_2:60262499-60262518	None:intergenic	20.0%
!!!	AATTCATTAACACAATTTTC+TGG	+	chr5_2:60262525-60262544	None:intergenic	20.0%
!!	ATTTTTGTGTTTGGTTGATT+GGG	+	chr5_2:60259995-60260014	None:intergenic	25.0%
!!!	TATTTTTGTGTTTGGTTGAT+TGG	+	chr5_2:60259996-60260015	None:intergenic	25.0%
!!!	TGGTTTTGTATTTTTGTGTT+TGG	+	chr5_2:60260004-60260023	None:intergenic	25.0%
!	GAAGATTATGAGTTTGTATA+TGG	-	chr5_2:60260558-60260577	Msa0779090:intron	25.0%
!	ACATGATAACATTCTTCATA+AGG	-	chr5_2:60260743-60260762	Msa0779090:intron	25.0%
!!	ATGATAACATTCTTTGAAAG+TGG	-	chr5_2:60260782-60260801	Msa0779090:intron	25.0%
!	ACAACTATTGAATAGACTTT+AGG	-	chr5_2:60260917-60260936	Msa0779090:intron	25.0%
!	AATATGAGGGAGAAAAAAAA+AGG	+	chr5_2:60260977-60260996	None:intergenic	25.0%
!!!	ACTTAATTTTTGGTGTAATC+GGG	+	chr5_2:60261037-60261056	None:intergenic	25.0%
!	TAAATAAAAAATCGGCTACA+TGG	-	chr5_2:60261056-60261075	Msa0779090:intron	25.0%
!!	GTTTCTTTTATGGTTTTTCT+AGG	-	chr5_2:60261181-60261200	Msa0779090:intron	25.0%
!	AAATCAAATGAAGGAAAATC+GGG	+	chr5_2:60261228-60261247	None:intergenic	25.0%
!!	GAAAACAAGTTTATGTGTTT+TGG	+	chr5_2:60261293-60261312	None:intergenic	25.0%
!	TTCATGTTAGAATTCGAATT+TGG	-	chr5_2:60261482-60261501	Msa0779090:intron	25.0%
!	TACATTAAATTTGGTACACA+AGG	-	chr5_2:60261820-60261839	Msa0779090:intron	25.0%
!	TTTAATGTATAGTTTCTTCG+TGG	-	chr5_2:60261939-60261958	Msa0779090:intron	25.0%
!	GGCACAATAAAACTTATTAA+AGG	-	chr5_2:60262178-60262197	Msa0779090:intron	25.0%
!	ACTCAATAAAAAAACCTAAG+AGG	+	chr5_2:60262643-60262662	None:intergenic	25.0%
!	AATAAGAAGTGAGAAAAACA+AGG	+	chr5_2:60262708-60262727	None:intergenic	25.0%
!!!	TTGTTTTTCTCACTTCTTAT+TGG	-	chr5_2:60262707-60262726	Msa0779090:CDS	25.0%
!	TTCTTATTGGTCAAAAACAA+TGG	-	chr5_2:60262720-60262739	Msa0779090:CDS	25.0%
!	ATTTGTATTCTGTATTGTAG+TGG	-	chr5_2:60262928-60262947	Msa0779090:five_prime_UTR	25.0%
!!!	ATATATGTAGTGCTTGTTTT+TGG	-	chr5_2:60263017-60263036	Msa0779090:five_prime_UTR	25.0%
	CTAATAGAGAAACCAATCAT+GGG	-	chr5_2:60260052-60260071	Msa0779090:three_prime_UTR	30.0%
!!!	AGCTTTTTTGCTTTTTCCTA+TGG	+	chr5_2:60260083-60260102	None:intergenic	30.0%
	GCTAAGATTATGAAGATAGA+TGG	-	chr5_2:60260100-60260119	Msa0779090:three_prime_UTR	30.0%
!	TGTTGGAGTTTTTACTTTGA+AGG	+	chr5_2:60260131-60260150	None:intergenic	30.0%
	CACTAACGAAATATCTGAAA+CGG	+	chr5_2:60260410-60260429	None:intergenic	30.0%
!	TTCCATCAATTTTTCCAACT+GGG	+	chr5_2:60260509-60260528	None:intergenic	30.0%
	ATTATGAGTTTGTATATGGG+TGG	-	chr5_2:60260562-60260581	Msa0779090:intron	30.0%
	GTGATAAAACTAGACATGAT+AGG	+	chr5_2:60261376-60261395	None:intergenic	30.0%
	ATAGAAGCTTAACAAGACTT+TGG	-	chr5_2:60261695-60261714	Msa0779090:intron	30.0%
	GCAATCAATATATGAAGTAG+AGG	-	chr5_2:60261902-60261921	Msa0779090:intron	30.0%
!	CTATGTGAAAAGGATTTTGA+AGG	-	chr5_2:60262024-60262043	Msa0779090:intron	30.0%
	TTCAAATACCCAATTTAGCA+AGG	-	chr5_2:60262214-60262233	Msa0779090:intron	30.0%
	TCAAATACCCAATTTAGCAA+GGG	-	chr5_2:60262215-60262234	Msa0779090:intron	30.0%
!	ATTTTACCCCTTGCTAAATT+GGG	+	chr5_2:60262225-60262244	None:intergenic	30.0%
!	TATTTTACCCCTTGCTAAAT+TGG	+	chr5_2:60262226-60262245	None:intergenic	30.0%
!!	TCTACATGTTATTTCTTCTC+TGG	+	chr5_2:60262273-60262292	None:intergenic	30.0%
	TAGTGTATGTGTAAGAATCA+CGG	+	chr5_2:60262401-60262420	None:intergenic	30.0%
	TCAACAAAGTTGTCATCAAA+TGG	+	chr5_2:60262682-60262701	None:intergenic	30.0%
	AAAACAATGGAGAGAGAAAA+AGG	-	chr5_2:60262733-60262752	Msa0779090:CDS	30.0%
!!!	AACCACTTTTTGACAACTTT+TGG	+	chr5_2:60262805-60262824	None:intergenic	30.0%
	TCTTGTCTTGTGTTTGTTTG+TGG	+	chr5_2:60260024-60260043	None:intergenic	35.0%
!!	CCATGATTGGTTTCTCTATT+AGG	+	chr5_2:60260054-60260073	None:intergenic	35.0%
	CCTAATAGAGAAACCAATCA+TGG	-	chr5_2:60260051-60260070	Msa0779090:three_prime_UTR	35.0%
	ACAACTTCGTTTGATGTTGT+TGG	+	chr5_2:60260148-60260167	None:intergenic	35.0%
	GAATCTAAGAGAACATGGTT+GGG	+	chr5_2:60260181-60260200	None:intergenic	35.0%
	AGAATCTAAGAGAACATGGT+TGG	+	chr5_2:60260182-60260201	None:intergenic	35.0%
	CTTGAGAATCTAAGAGAACA+TGG	+	chr5_2:60260186-60260205	None:intergenic	35.0%
	TCTCAAGCAGTAAAACACTT+CGG	-	chr5_2:60260199-60260218	Msa0779090:three_prime_UTR	35.0%
!!	AGTTCTTGATTTGGCTCTAA+GGG	+	chr5_2:60260238-60260257	None:intergenic	35.0%
!!!	TAACGCCGTTTTTTCATCTT+CGG	+	chr5_2:60260308-60260327	None:intergenic	35.0%
	CTATCAAAGCCCAAATTTGA+TGG	+	chr5_2:60260442-60260461	None:intergenic	35.0%
!	CATCAAATTTGGGCTTTGAT+AGG	-	chr5_2:60260440-60260459	Msa0779090:intron	35.0%
!	AATTTTTCCAACTGGGCTTT+AGG	+	chr5_2:60260502-60260521	None:intergenic	35.0%
!	CTTCCATCAATTTTTCCAAC+TGG	+	chr5_2:60260510-60260529	None:intergenic	35.0%
	TTGATGGAAGAGAGTAATGA+TGG	-	chr5_2:60260520-60260539	Msa0779090:intron	35.0%
	TGATGGAAGAGAGTAATGAT+GGG	-	chr5_2:60260521-60260540	Msa0779090:intron	35.0%
	TTGATATCCGCAACAAGAAA+AGG	+	chr5_2:60260885-60260904	None:intergenic	35.0%
!	TTTGGTGTAATCGGGATATA+GGG	+	chr5_2:60261029-60261048	None:intergenic	35.0%
!!	TTTTGGTGTAATCGGGATAT+AGG	+	chr5_2:60261030-60261049	None:intergenic	35.0%
	TGTTTAGCGTAGCATAGATA+AGG	+	chr5_2:60261415-60261434	None:intergenic	35.0%
	GTCAAACATGCTATGTGAAA+AGG	-	chr5_2:60262014-60262033	Msa0779090:intron	35.0%
	AATACTCGTCGTTTACTTGT+TGG	-	chr5_2:60262152-60262171	Msa0779090:intron	35.0%
	CAAATACCCAATTTAGCAAG+GGG	-	chr5_2:60262216-60262235	Msa0779090:intron	35.0%
	TGTTTGGTATCACATTGAGT+AGG	-	chr5_2:60262296-60262315	Msa0779090:intron	35.0%
	GTAGCTTCTGCAAAAAATCA+CGG	-	chr5_2:60262368-60262387	Msa0779090:CDS	35.0%
	AAACAATTTAAGCGCGTGTT+TGG	+	chr5_2:60262429-60262448	None:intergenic	35.0%
	GACTTTCTTCAATCTCCAAT+GGG	+	chr5_2:60262592-60262611	None:intergenic	35.0%
	GTCCAAAAGTTGTCAAAAAG+TGG	-	chr5_2:60262800-60262819	Msa0779090:CDS	35.0%
	CTACATATATGATCTGCTAC+AGG	+	chr5_2:60263007-60263026	None:intergenic	35.0%
!!!	GTAGTGCTTGTTTTTGGTTA+CGG	-	chr5_2:60263023-60263042	Msa0779090:five_prime_UTR	35.0%
!!	AGTGTGGGTTATGAGTTTTG+TGG	+	chr5_2:60259968-60259987	None:intergenic	40.0%
	CTCAAGCAGTAAAACACTTC+GGG	-	chr5_2:60260200-60260219	Msa0779090:three_prime_UTR	40.0%
	AGTAAAACACTTCGGGCTTA+GGG	-	chr5_2:60260207-60260226	Msa0779090:three_prime_UTR	40.0%
!!	GAGTTCTTGATTTGGCTCTA+AGG	+	chr5_2:60260239-60260258	None:intergenic	40.0%
	TTGGGCTTGAGTTCTTGATT+TGG	+	chr5_2:60260247-60260266	None:intergenic	40.0%
	TGAGCCCGAAGATGAAAAAA+CGG	-	chr5_2:60260300-60260319	Msa0779090:three_prime_UTR	40.0%
!!!	AACGCCGTTTTTTCATCTTC+GGG	+	chr5_2:60260307-60260326	None:intergenic	40.0%
	AAAAAACGGCGTTACCTAGA+AGG	-	chr5_2:60260314-60260333	Msa0779090:three_prime_UTR	40.0%
	AAAAACGGCGTTACCTAGAA+GGG	-	chr5_2:60260315-60260334	Msa0779090:three_prime_UTR	40.0%
	ATCTAGTGGAATAAGGAACG+TGG	-	chr5_2:60260342-60260361	Msa0779090:CDS	40.0%
	AATAAGGAACGTGGATGCTA+AGG	-	chr5_2:60260351-60260370	Msa0779090:CDS	40.0%
	ATAAGGAACGTGGATGCTAA+GGG	-	chr5_2:60260352-60260371	Msa0779090:CDS	40.0%
	TCAAAGCCCAAATTTGATGG+CGG	+	chr5_2:60260439-60260458	None:intergenic	40.0%
	AGCCCAGTTGGAAAAATTGA+TGG	-	chr5_2:60260504-60260523	Msa0779090:intron	40.0%
	ATGAGTTTGTATATGGGTGG+CGG	-	chr5_2:60260565-60260584	Msa0779090:intron	40.0%
	ATACTTATACATACCCCACG+AGG	+	chr5_2:60260640-60260659	None:intergenic	40.0%
	AGTGGCTTGAAATTTCGTTG+TGG	-	chr5_2:60260800-60260819	Msa0779090:intron	40.0%
	TTCGTTGTGGCGTTTCATAA+TGG	-	chr5_2:60260813-60260832	Msa0779090:intron	40.0%
!	TTTTCTCCCTCATATTCTCG+TGG	-	chr5_2:60260981-60261000	Msa0779090:intron	40.0%
	CAATTGCCACGAGAATATGA+GGG	+	chr5_2:60260990-60261009	None:intergenic	40.0%
	AATCGGGTCAAAAGAAGAAG+AGG	+	chr5_2:60261212-60261231	None:intergenic	40.0%
!	TTGTTCTCTAGCGGTTTGTT+AGG	+	chr5_2:60262058-60262077	None:intergenic	40.0%
	AACTGCAAGTTGTTCTCTAG+CGG	+	chr5_2:60262067-60262086	None:intergenic	40.0%
	GGACTTTCTTCAATCTCCAA+TGG	+	chr5_2:60262593-60262612	None:intergenic	40.0%
	AGAGAGAAAAAGGAAGAGAG+AGG	-	chr5_2:60262743-60262762	Msa0779090:CDS	40.0%
!	GGTTGATTGGGTGAAAGTGT+GGG	+	chr5_2:60259983-60260002	None:intergenic	45.0%
	TGGTTGATTGGGTGAAAGTG+TGG	+	chr5_2:60259984-60260003	None:intergenic	45.0%
	CCTATGGTGTTTCCCATGAT+TGG	+	chr5_2:60260067-60260086	None:intergenic	45.0%
	CCAATCATGGGAAACACCAT+AGG	-	chr5_2:60260064-60260083	Msa0779090:three_prime_UTR	45.0%
	CAGTAAAACACTTCGGGCTT+AGG	-	chr5_2:60260206-60260225	Msa0779090:three_prime_UTR	45.0%
	TCATCTTCGGGCTCAATCTT+AGG	+	chr5_2:60260295-60260314	None:intergenic	45.0%
	GGGTACGATCTAGTGGAATA+AGG	-	chr5_2:60260335-60260354	Msa0779090:exon	45.0%
	AAGCCACCGCCATCAAATTT+GGG	-	chr5_2:60260430-60260449	Msa0779090:intron	45.0%
	GCTTTGATAGGCCCTTTGAT+GGG	-	chr5_2:60260452-60260471	Msa0779090:intron	45.0%
!!	GAGTAATGATGGGTCTGAAG+TGG	-	chr5_2:60260531-60260550	Msa0779090:intron	45.0%
!!	TAATGATGGGTCTGAAGTGG+CGG	-	chr5_2:60260534-60260553	Msa0779090:intron	45.0%
!	AGCATGACGGTGATGTTTTG+CGG	-	chr5_2:60260602-60260621	Msa0779090:intron	45.0%
	GACTTGCGTGAAATTGCATG+TGG	-	chr5_2:60260843-60260862	Msa0779090:intron	45.0%
	TGCATGTGGTTGCAAAAGAC+AGG	-	chr5_2:60260857-60260876	Msa0779090:intron	45.0%
	GCATGTGGTTGCAAAAGACA+GGG	-	chr5_2:60260858-60260877	Msa0779090:intron	45.0%
!	ACAGGGTCCTTTTCTTGTTG+CGG	-	chr5_2:60260875-60260894	Msa0779090:intron	45.0%
	CCAATTGCCACGAGAATATG+AGG	+	chr5_2:60260991-60261010	None:intergenic	45.0%
	CCTCATATTCTCGTGGCAAT+TGG	-	chr5_2:60260988-60261007	Msa0779090:intron	45.0%
	ATTCTCGTGGCAATTGGCAA+AGG	-	chr5_2:60260994-60261013	Msa0779090:intron	45.0%
	CATAGATAAGGATGCTGCGT+TGG	+	chr5_2:60261403-60261422	None:intergenic	45.0%
!	TCGTCGTTTACTTGTTGGTC+TGG	-	chr5_2:60262157-60262176	Msa0779090:intron	45.0%
!!	ACGAGTGAGTTTTAGCCCAT+TGG	-	chr5_2:60262574-60262593	Msa0779090:CDS	45.0%
	TATTGAGGAGCTGCTTCAAC+AGG	+	chr5_2:60262614-60262633	None:intergenic	45.0%
	CCTAAGAGGCAGTACTATTG+AGG	+	chr5_2:60262629-60262648	None:intergenic	45.0%
	CCTCAATAGTACTGCCTCTT+AGG	-	chr5_2:60262626-60262645	Msa0779090:CDS	45.0%
!!!	ATAAAAAATAAATAAACTTT+TGG	-	chr5_2:60260948-60260967	Msa0779090:intron	5.0%
!!!	TTTTTTATTTACTTAATTTT+TGG	+	chr5_2:60261047-60261066	None:intergenic	5.0%
!!	AAATTAAGTAAATAAAAAAT+CGG	-	chr5_2:60261048-60261067	Msa0779090:intron	5.0%
!!	TAAAAATAAAATATTATTGA+AGG	-	chr5_2:60261438-60261457	Msa0779090:intron	5.0%
!!	AAAAATAAAATATTATTGAA+GGG	-	chr5_2:60261439-60261458	Msa0779090:intron	5.0%
!!!	TTTATATTTTAATACTTAAT+TGG	-	chr5_2:60261624-60261643	Msa0779090:intron	5.0%
!!	AATAAAATATAAGAAAAAAA+AGG	-	chr5_2:60262242-60262261	Msa0779090:intron	5.0%
!!	ATAAAATATAAGAAAAAAAA+GGG	-	chr5_2:60262243-60262262	Msa0779090:intron	5.0%
	CCACTAGATCGTACCCTTCT+AGG	+	chr5_2:60260331-60260350	None:intergenic	50.0%
!	CCTAGAAGGGTACGATCTAG+TGG	-	chr5_2:60260328-60260347	Msa0779090:exon	50.0%
	GAAGCCACCGCCATCAAATT+TGG	-	chr5_2:60260429-60260448	Msa0779090:intron	50.0%
!!	AAGCCCAAATTTGATGGCGG+TGG	+	chr5_2:60260436-60260455	None:intergenic	50.0%
!	GGCTTTGATAGGCCCTTTGA+TGG	-	chr5_2:60260451-60260470	Msa0779090:intron	50.0%
	ACCCTCATGGACCCATCAAA+GGG	+	chr5_2:60260466-60260485	None:intergenic	50.0%
	AAGCCTCATCTTCACCCTCA+TGG	+	chr5_2:60260479-60260498	None:intergenic	50.0%
!	AGTTTGTATATGGGTGGCGG+TGG	-	chr5_2:60260568-60260587	Msa0779090:intron	50.0%
	TACATACCCCACGAGGCTTT+CGG	+	chr5_2:60260633-60260652	None:intergenic	50.0%
	CTGCTACAGGTCAAGCAATG+AGG	+	chr5_2:60262994-60263013	None:intergenic	50.0%
!	GCCCTTTGATGGGTCCATGA+GGG	-	chr5_2:60260462-60260481	Msa0779090:intron	55.0%
	CACCCTCATGGACCCATCAA+AGG	+	chr5_2:60260467-60260486	None:intergenic	55.0%
	GGTCCATGAGGGTGAAGATG+AGG	-	chr5_2:60260473-60260492	Msa0779090:intron	55.0%
	GAGGCTTCCTAAAGCCCAGT+TGG	-	chr5_2:60260492-60260511	Msa0779090:intron	55.0%
	GGCAAAACCGAAAGCCTCGT+GGG	-	chr5_2:60260623-60260642	Msa0779090:intron	55.0%
	GCAAAACCGAAAGCCTCGTG+GGG	-	chr5_2:60260624-60260643	Msa0779090:intron	55.0%
!	GGCCCTTTGATGGGTCCATG+AGG	-	chr5_2:60260461-60260480	Msa0779090:intron	60.0%
!	TATGGGTGGCGGTGGTGATG+CGG	-	chr5_2:60260576-60260595	Msa0779090:intron	60.0%
	CGGCAAAACCGAAAGCCTCG+TGG	-	chr5_2:60260622-60260641	Msa0779090:intron	60.0%
	GGTGATGCGGCGGAGCATGA+CGG	-	chr5_2:60260589-60260608	Msa0779090:intron	65.0%
!	GGGTGGCGGTGGTGATGCGG+CGG	-	chr5_2:60260579-60260598	Msa0779090:intron	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	60259921	60263052	60259921	ID=Msa0779090;Name=Msa0779090
chr5_2	mRNA	60259921	60263052	60259921	ID=Msa0779090-mRNA-1;Parent=Msa0779090;Name=Msa0779090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=149\|1\|1\|1\|1\|1\|2\|418\|212
chr5_2	exon	60259921	60260401	60259921	ID=Msa0779090-mRNA-1:exon:17617;Parent=Msa0779090-mRNA-1
chr5_2	exon	60262328	60263052	60262328	ID=Msa0779090-mRNA-1:exon:17616;Parent=Msa0779090-mRNA-1
chr5_2	five_prime_UTR	60262904	60263052	60262904	ID=Msa0779090-mRNA-1:five_prime_utr;Parent=Msa0779090-mRNA-1
chr5_2	CDS	60262328	60262903	60262328	ID=Msa0779090-mRNA-1:cds;Parent=Msa0779090-mRNA-1
chr5_2	CDS	60260339	60260401	60260339	ID=Msa0779090-mRNA-1:cds;Parent=Msa0779090-mRNA-1
chr5_2	three_prime_UTR	60259921	60260338	60259921	ID=Msa0779090-mRNA-1:three_prime_utr;Parent=Msa0779090-mRNA-1

Gene Sequence

>Msa0779090

ATGGGAAACACCATAGGAAAAAGCAAAAAAGCTAAGATTATGAAGATAGATGGAGAAACCTTCAAAGTAAAAACTCCAACAACATCAAACGAAGTTGTCAAAGATTATCCCAACCATGTTCTCTTAGATTCTCAAGCAGTAAAACACTTCGGGCTTAGGGCAAAACCCTTAGAGCCAAATCAAGAACTCAAGCCCAAGAAAATTTACTTCTTAGTAGATTTACCTAAGATTGAGCCCGAAGATGAAAAAACGGCGTTACCTAGAAGGGTACGATCTAGTGGAATAAGGAACGTGGATGCTAAGGGTAGACTTGAATTATTGATGCTATCTAAACGCTCCGTTTCAGATATTTCGTTAGTGAAGCCACCGCCATCAAATTTGGGCTTTGATAGGCCCTTTGATGGGTCCATGAGGGTGAAGATGAGGCTTCCTAAAGCCCAGTTGGAAAAATTGATGGAAGAGAGTAATGATGGGTCTGAAGTGGCGGAGAAGATTATGAGTTTGTATATGGGTGGCGGTGGTGATGCGGCGGAGCATGACGGTGATGTTTTGCGGCAAAACCGAAAGCCTCGTGGGAAACGAGTGAGTTTTAGCCCATTGGAGATTGAAGAAAGTCCTGTTGAAGCAGCTCCTCAATAG

Protein sequence

>Msa0779090

MGNTIGKSKKAKIMKIDGETFKVKTPTTSNEVVKDYPNHVLLDSQAVKHFGLRAKPLEPNQELKPKKIYFLVDLPKIEPEDEKTALPRRVRSSGIRNVDAKGRLELLMLSKRSVSDISLVKPPPSNLGFDRPFDGSMRVKMRLPKAQLEKLMEESNDGSEVAEKIMSLYMGGGGDAAEHDGDVLRQNRKPRGKRVSFSPLEIEESPVEAAPQ*