Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856710 | XP_003616384.1 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 1.43e-141 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856710 | sp|Q6NLC8|Y1648_ARATH | 56.250 | 176 | 70 | 4 | 1 | 170 | 1 | 175 | 7.78e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856710 | G7KBN9 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 6.81e-142 | 404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0109590 | Msa0856710 | 0.811816 | 5.792571e-51 | -8.615850e-47 |
| Msa0620620 | Msa0856710 | 0.829107 | 6.194108e-55 | -8.615850e-47 |
| Msa0737350 | Msa0856710 | 0.871304 | 7.569136e-67 | -8.615850e-47 |
| Msa0779090 | Msa0856710 | 0.901813 | 1.831961e-78 | -8.615850e-47 |
| Msa0784380 | Msa0856710 | 0.801602 | 8.334495e-49 | -8.615850e-47 |
| Msa0816510 | Msa0856710 | 0.936352 | 1.991962e-97 | -8.615850e-47 |
| Msa0816540 | Msa0856710 | 0.925309 | 2.184245e-90 | -8.615850e-47 |
| Msa0818170 | Msa0856710 | 0.823971 | 1.039036e-53 | -8.615850e-47 |
| Msa0826760 | Msa0856710 | 0.816723 | 4.774973e-52 | -8.615850e-47 |
| Msa0378380 | Msa0856710 | 0.831332 | 1.772842e-55 | -8.615850e-47 |
| Msa0427980 | Msa0856710 | 0.801124 | 1.044044e-48 | -8.615850e-47 |
| Msa0474390 | Msa0856710 | 0.801416 | 9.096224e-49 | -8.615850e-47 |
| Msa0239800 | Msa0856710 | 0.806398 | 8.387954e-50 | -8.615850e-47 |
| Msa0340690 | Msa0856710 | 0.800267 | 1.561411e-48 | -8.615850e-47 |
| Msa0518560 | Msa0856710 | 0.822794 | 1.957441e-53 | -8.615850e-47 |
| Msa0541040 | Msa0856710 | 0.814013 | 1.911851e-51 | -8.615850e-47 |
| Msa0856710 | Msa1204630 | 0.804175 | 2.451028e-49 | -8.615850e-47 |
| Msa0856710 | Msa1293590 | 0.803615 | 3.202893e-49 | -8.615850e-47 |
| Msa0856710 | Msa1376130 | 0.814682 | 1.360327e-51 | -8.615850e-47 |
| Msa0856710 | Msa1377570 | 0.804979 | 1.665185e-49 | -8.615850e-47 |
| Msa0856710 | Msa1448770 | 0.802438 | 5.609103e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856710 | MtrunA17_Chr5g0435091 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 1.31e-145 | 404 |
| Msa0856710 | MtrunA17_Chr3g0111521 | 61.712 | 222 | 67 | 6 | 1 | 210 | 1 | 216 | 1.69e-79 | 236 |
| Msa0856710 | MtrunA17_Chr1g0160291 | 52.841 | 176 | 74 | 3 | 1 | 175 | 1 | 168 | 1.73e-56 | 178 |
| Msa0856710 | MtrunA17_Chr4g0044361 | 51.412 | 177 | 73 | 4 | 1 | 173 | 1 | 168 | 4.08e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856710 | AT1G66480.1 | 56.250 | 176 | 70 | 4 | 1 | 170 | 1 | 175 | 7.91e-60 | 187 |
| Msa0856710 | AT5G37840.1 | 51.196 | 209 | 85 | 5 | 1 | 198 | 1 | 203 | 2.38e-58 | 183 |
| Msa0856710 | AT2G01340.1 | 52.907 | 172 | 69 | 5 | 1 | 171 | 1 | 161 | 1.10e-53 | 171 |
| Msa0856710 | AT1G71015.1 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 3.68e-40 | 136 |
| Msa0856710 | AT1G71015.2 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 3.68e-40 | 136 |
Find 76 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATTGGTTTCTCTATT+AGG | 0.126642 | 5_4:-51700667 | None:intergenic |
| ACAACTTCGTTTGATGTTAT+TGG | 0.130160 | 5_4:-51700761 | None:intergenic |
| CCTCAATAGTATTTCCTCTT+AGG | 0.200768 | 5_4:+51703144 | Msa0856710:exon |
| GGTTGTATTTATATATATAT+TGG | 0.209013 | 5_4:-51700560 | None:intergenic |
| GAAGATTATGAGTTTGTATA+TGG | 0.218361 | 5_4:+51701174 | Msa0856710:CDS |
| ATATATGTAGTGCTTGATTT+TGG | 0.239755 | 5_4:+51703344 | Msa0856710:three_prime_UTR |
| CCTATGGTGTTTCCCATGAT+TGG | 0.278242 | 5_4:-51700680 | None:intergenic |
| GTTGTATTTATATATATATT+GGG | 0.310646 | 5_4:-51700559 | None:intergenic |
| GAGTTCTTGATTTGGCTCTA+AGG | 0.329180 | 5_4:-51700852 | None:intergenic |
| CATCAAATTTGAGCTTTGAT+AGG | 0.333943 | 5_4:+51701056 | Msa0856710:CDS |
| CAGTAAAACACTTCGGGCTT+AGG | 0.337959 | 5_4:+51700822 | Msa0856710:CDS |
| TCTTGTCTTGTGTTTCTTTG+TGG | 0.357395 | 5_4:-51700637 | None:intergenic |
| GCTAAGATTATGAAGATAGA+TGG | 0.365523 | 5_4:+51700716 | Msa0856710:CDS |
| CTCAAGCAGTAAAACACTTC+GGG | 0.366167 | 5_4:+51700816 | Msa0856710:CDS |
| AGCTTTGATAGGCCCTTTGA+TGG | 0.367331 | 5_4:+51701067 | Msa0856710:CDS |
| TTGGGCTTGAGTTCTTGATT+TGG | 0.367392 | 5_4:-51700860 | None:intergenic |
| TATATATATTGGGATTGTTA+TGG | 0.371220 | 5_4:-51700549 | None:intergenic |
| TACATACCCCACGAGGCTTT+CGG | 0.379415 | 5_4:-51701246 | None:intergenic |
| TTCATCTTCGGGCTGAACCT+TGG | 0.389122 | 5_4:-51700909 | None:intergenic |
| TCATCTTCGGGCTGAACCTT+GGG | 0.401043 | 5_4:-51700908 | None:intergenic |
| AGTTCTTGATTTGGCTCTAA+GGG | 0.425177 | 5_4:-51700851 | None:intergenic |
| GACTTTCTTCAATCTCCATT+GGG | 0.425939 | 5_4:-51703107 | None:intergenic |
| GGACTTTCTTCAATCTCCAT+TGG | 0.427544 | 5_4:-51703108 | None:intergenic |
| AGCCCAGTTGGAAAAGTTGA+TGG | 0.431835 | 5_4:+51701120 | Msa0856710:CDS |
| CTACATATATGATCTTCTAT+AGG | 0.447183 | 5_4:-51703331 | None:intergenic |
| AGTAAAACACTTCGGGCTTA+GGG | 0.449480 | 5_4:+51700823 | Msa0856710:CDS |
| TATTGAGGAGCTGCTTCAAC+AGG | 0.453324 | 5_4:-51703129 | None:intergenic |
| TTGATGGAAGAGAGTAATGA+TGG | 0.466806 | 5_4:+51701136 | Msa0856710:CDS |
| TGGTTGATTGGGTGAAAGTG+TGG | 0.471214 | 5_4:-51700597 | None:intergenic |
| CACTAACGAAATATCTGAAA+CGG | 0.473609 | 5_4:-51701023 | None:intergenic |
| GAATCAAGTAAAACATGGTT+GGG | 0.474525 | 5_4:-51700794 | None:intergenic |
| CCTAATAGAGAAACCAATCA+TGG | 0.475579 | 5_4:+51700667 | Msa0856710:exon |
| CCACTAGAACGTACCCTCCT+AGG | 0.477484 | 5_4:-51700944 | None:intergenic |
| AGAATCAAGTAAAACATGGT+TGG | 0.486013 | 5_4:-51700795 | None:intergenic |
| AGTAACAAGAAACAAGTTAG+AGG | 0.492403 | 5_4:-51700525 | None:intergenic |
| GAACCTTGGGTAAATCTACT+AGG | 0.494957 | 5_4:-51700895 | None:intergenic |
| TAATGATGGGTCTGAGGTGG+CGG | 0.497077 | 5_4:+51701150 | Msa0856710:CDS |
| CACCCTCATGGACCCATCAA+AGG | 0.503885 | 5_4:-51701080 | None:intergenic |
| GATAAGGAACGTGGATGCTA+AGG | 0.505115 | 5_4:+51700967 | Msa0856710:CDS |
| GGGTACGTTCTAGTGGGATA+AGG | 0.513180 | 5_4:+51700951 | Msa0856710:CDS |
| AAGATTATGAGTTTGTATAT+GGG | 0.514266 | 5_4:+51701175 | Msa0856710:CDS |
| AAGCCTCATCTTCACCCTCA+TGG | 0.515255 | 5_4:-51701092 | None:intergenic |
| ATGAGTTTGTATATGGGTAG+CGG | 0.520469 | 5_4:+51701181 | Msa0856710:CDS |
| ACCCTCATGGACCCATCAAA+GGG | 0.521258 | 5_4:-51701079 | None:intergenic |
| TCAAAGCTCAAATTTGATGA+TGG | 0.527565 | 5_4:-51701052 | None:intergenic |
| CCTAGGAGGGTACGTTCTAG+TGG | 0.533099 | 5_4:+51700944 | Msa0856710:CDS |
| GGTTGATTGGGTGAAAGTGT+GGG | 0.533520 | 5_4:-51700596 | None:intergenic |
| AAGCTCAAATTTGATGATGG+TGG | 0.537750 | 5_4:-51701049 | None:intergenic |
| ACAAGAAACAAGTTAGAGGT+TGG | 0.541035 | 5_4:-51700521 | None:intergenic |
| GGCTAAACCGAAAGCCTCGT+GGG | 0.541410 | 5_4:+51701239 | Msa0856710:CDS |
| GCTTTGATAGGCCCTTTGAT+GGG | 0.547818 | 5_4:+51701068 | Msa0856710:CDS |
| CCTAAGAGGAAATACTATTG+AGG | 0.556467 | 5_4:-51703144 | None:intergenic |
| GAGGCTTCCTAAAGCCCAGT+TGG | 0.560896 | 5_4:+51701108 | Msa0856710:CDS |
| TCTCAAGCAGTAAAACACTT+CGG | 0.563644 | 5_4:+51700815 | Msa0856710:CDS |
| CCAATCATGGGAAACACCAT+AGG | 0.564589 | 5_4:+51700680 | Msa0856710:exon |
| GGCCCTTTGATGGGTCCATG+AGG | 0.590646 | 5_4:+51701077 | Msa0856710:CDS |
| GGTCCATGAGGGTGAAGATG+AGG | 0.594224 | 5_4:+51701089 | Msa0856710:CDS |
| CTTGAGAATCAAGTAAAACA+TGG | 0.599048 | 5_4:-51700799 | None:intergenic |
| CTTCCTAGTAGATTTACCCA+AGG | 0.604663 | 5_4:+51700892 | Msa0856710:CDS |
| CTAATAGAGAAACCAATCAT+GGG | 0.606619 | 5_4:+51700668 | Msa0856710:exon |
| GGGTAGCGGTGGTGATGCGG+CGG | 0.614054 | 5_4:+51701195 | Msa0856710:CDS |
| ATAAGGAACGTGGATGCTAA+GGG | 0.617148 | 5_4:+51700968 | Msa0856710:CDS |
| GCCCTTTGATGGGTCCATGA+GGG | 0.621686 | 5_4:+51701078 | Msa0856710:CDS |
| CGGCTAAACCGAAAGCCTCG+TGG | 0.624658 | 5_4:+51701238 | Msa0856710:CDS |
| CTAGGAGGGTACGTTCTAGT+GGG | 0.625082 | 5_4:+51700945 | Msa0856710:CDS |
| GGTGATGCGGCGGAGCATGA+CGG | 0.634118 | 5_4:+51701205 | Msa0856710:CDS |
| TATGGGTAGCGGTGGTGATG+CGG | 0.636003 | 5_4:+51701192 | Msa0856710:CDS |
| GAGTAATGATGGGTCTGAGG+TGG | 0.637797 | 5_4:+51701147 | Msa0856710:CDS |
| AGAGAGTAATGATGGGTCTG+AGG | 0.645019 | 5_4:+51701144 | Msa0856710:CDS |
| TGATGGAAGAGAGTAATGAT+GGG | 0.646933 | 5_4:+51701137 | Msa0856710:CDS |
| TTCTAGTGGGATAAGGAACG+TGG | 0.684266 | 5_4:+51700958 | Msa0856710:CDS |
| GCTAAACCGAAAGCCTCGTG+GGG | 0.689080 | 5_4:+51701240 | Msa0856710:CDS |
| TGTACATTCTAACCATCATG+CGG | 0.714217 | 5_4:-51703181 | None:intergenic |
| AGTTTGTATATGGGTAGCGG+TGG | 0.722789 | 5_4:+51701184 | Msa0856710:CDS |
| ACGTACCCTCCTAGGTAACG+AGG | 0.744483 | 5_4:-51700936 | None:intergenic |
| ATACTTATACATACCCCACG+AGG | 0.764323 | 5_4:-51701253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGTATTTATATATATATT+GGG | - | chr5_4:51700562-51700581 | None:intergenic | 10.0% |
| !!! | TTTTGTAATAATTTCTTTTA+TGG | + | chr5_4:51701705-51701724 | Msa0856710:intron | 10.0% |
| !! | GGTTGTATTTATATATATAT+TGG | - | chr5_4:51700563-51700582 | None:intergenic | 15.0% |
| !!! | TTTTGTTGTTATTATTATCT+TGG | + | chr5_4:51701294-51701313 | Msa0856710:intron | 15.0% |
| !! | AATACAAGGAAAAAAAAATA+AGG | - | chr5_4:51701562-51701581 | None:intergenic | 15.0% |
| !!! | AACTCAATTACTTTTTTTTA+GGG | + | chr5_4:51702081-51702100 | Msa0856710:intron | 15.0% |
| !!! | ATTTTACTTGCTTAAAAATT+AGG | - | chr5_4:51702492-51702511 | None:intergenic | 15.0% |
| !! | TATATATATTGGGATTGTTA+TGG | - | chr5_4:51700552-51700571 | None:intergenic | 20.0% |
| !! | AAGATTATGAGTTTGTATAT+GGG | + | chr5_4:51701175-51701194 | Msa0856710:CDS | 20.0% |
| !! | AAAATAACATTCTTTCAAAG+TGG | + | chr5_4:51701394-51701413 | Msa0856710:intron | 20.0% |
| !!! | CCGATTTTTTAATTACTTAA+GGG | - | chr5_4:51701614-51701633 | None:intergenic | 20.0% |
| !! | CCCTTAAGTAATTAAAAAAT+CGG | + | chr5_4:51701611-51701630 | Msa0856710:intron | 20.0% |
| !!! | ATTTCTTTTATGGTTTTTCT+AGG | + | chr5_4:51701715-51701734 | Msa0856710:intron | 20.0% |
| !! | TAAATCAAATGAAGGAAAAT+CGG | - | chr5_4:51701763-51701782 | None:intergenic | 20.0% |
| !! | AAGAAGAATAAATCAAATGA+AGG | - | chr5_4:51701771-51701790 | None:intergenic | 20.0% |
| !!! | GAACTCAATTACTTTTTTTT+AGG | + | chr5_4:51702080-51702099 | Msa0856710:intron | 20.0% |
| !!! | AAGACTTTGGATTTTAATAA+AGG | + | chr5_4:51702242-51702261 | Msa0856710:intron | 20.0% |
| !! | ACTACTCACTATATATTTAA+GGG | - | chr5_4:51702296-51702315 | None:intergenic | 20.0% |
| !! | AACTACTCACTATATATTTA+AGG | - | chr5_4:51702297-51702316 | None:intergenic | 20.0% |
| !!! | CATATATTGATTGCATTTTA+AGG | - | chr5_4:51702416-51702435 | None:intergenic | 20.0% |
| !!! | AAACTTATTAAAGGAGATTT+TGG | + | chr5_4:51702709-51702728 | Msa0856710:intron | 20.0% |
| !!! | AATAACATGTAGATTTTGTT+TGG | + | chr5_4:51702799-51702818 | Msa0856710:intron | 20.0% |
| !!! | ATTAGATAGTTTCCTATTTT+AGG | + | chr5_4:51703002-51703021 | Msa0856710:intron | 20.0% |
| !! | AATAACTTAGTACCTAAAAT+AGG | - | chr5_4:51703017-51703036 | None:intergenic | 20.0% |
| !!! | AATTCATTAACACAATTTTG+TGG | - | chr5_4:51703043-51703062 | None:intergenic | 20.0% |
| !! | TACTAAAAAAAAAACCTAAG+AGG | - | chr5_4:51703161-51703180 | None:intergenic | 20.0% |
| !! | ATTTTTGTGTTTGGTTGATT+GGG | - | chr5_4:51700611-51700630 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTTTGGTTGAT+TGG | - | chr5_4:51700612-51700631 | None:intergenic | 25.0% |
| !!! | TGGTTTTGTATTTTTGTGTT+TGG | - | chr5_4:51700620-51700639 | None:intergenic | 25.0% |
| !! | TATTGGAGTTTTTACTTTGA+AGG | - | chr5_4:51700747-51700766 | None:intergenic | 25.0% |
| !! | ACTAGGAAGTAAATTTTCTT+GGG | - | chr5_4:51700881-51700900 | None:intergenic | 25.0% |
| !! | TACTAGGAAGTAAATTTTCT+TGG | - | chr5_4:51700882-51700901 | None:intergenic | 25.0% |
| ! | GAAGATTATGAGTTTGTATA+TGG | + | chr5_4:51701174-51701193 | Msa0856710:CDS | 25.0% |
| !!! | GCCGATTTTTTAATTACTTA+AGG | - | chr5_4:51701615-51701634 | None:intergenic | 25.0% |
| ! | AAATCAAATGAAGGAAAATC+GGG | - | chr5_4:51701762-51701781 | None:intergenic | 25.0% |
| ! | AGCACATATAGTAGAAAAAT+TGG | - | chr5_4:51701852-51701871 | None:intergenic | 25.0% |
| ! | ATGATAAAACTAGACATGAT+AGG | - | chr5_4:51701910-51701929 | None:intergenic | 25.0% |
| ! | TTCATGTTAGAATTCGAATT+TGG | + | chr5_4:51702016-51702035 | Msa0856710:intron | 25.0% |
| ! | TTTAATGTATAGTTTCTTCG+TGG | + | chr5_4:51702459-51702478 | Msa0856710:intron | 25.0% |
| ! | TACTTCAAATAATGTCAAAC+AGG | + | chr5_4:51702521-51702540 | Msa0856710:intron | 25.0% |
| ! | GGCACAATAAAACTTATTAA+AGG | + | chr5_4:51702700-51702719 | Msa0856710:intron | 25.0% |
| ! | CTACATATATGATCTTCTAT+AGG | - | chr5_4:51703334-51703353 | None:intergenic | 25.0% |
| !! | ATATATGTAGTGCTTGATTT+TGG | + | chr5_4:51703344-51703363 | Msa0856710:three_prime_UTR | 25.0% |
| AGTAACAAGAAACAAGTTAG+AGG | - | chr5_4:51700528-51700547 | None:intergenic | 30.0% | |
| CTAATAGAGAAACCAATCAT+GGG | + | chr5_4:51700668-51700687 | Msa0856710:exon | 30.0% | |
| !!! | AGCTTTTTTGCTTTTTCCTA+TGG | - | chr5_4:51700699-51700718 | None:intergenic | 30.0% |
| GCTAAGATTATGAAGATAGA+TGG | + | chr5_4:51700716-51700735 | Msa0856710:CDS | 30.0% | |
| ACAACTTCGTTTGATGTTAT+TGG | - | chr5_4:51700764-51700783 | None:intergenic | 30.0% | |
| GAATCAAGTAAAACATGGTT+GGG | - | chr5_4:51700797-51700816 | None:intergenic | 30.0% | |
| AGAATCAAGTAAAACATGGT+TGG | - | chr5_4:51700798-51700817 | None:intergenic | 30.0% | |
| CTTGAGAATCAAGTAAAACA+TGG | - | chr5_4:51700802-51700821 | None:intergenic | 30.0% | |
| !!! | TAACGAGGTTTTTTCATCTT+CGG | - | chr5_4:51700924-51700943 | None:intergenic | 30.0% |
| CACTAACGAAATATCTGAAA+CGG | - | chr5_4:51701026-51701045 | None:intergenic | 30.0% | |
| TCAAAGCTCAAATTTGATGA+TGG | - | chr5_4:51701055-51701074 | None:intergenic | 30.0% | |
| ! | CATCAAATTTGAGCTTTGAT+AGG | + | chr5_4:51701056-51701075 | Msa0856710:CDS | 30.0% |
| !!! | TTTTTTTCCTTGTATTCTCG+TGG | + | chr5_4:51701566-51701585 | Msa0856710:intron | 30.0% |
| ! | GAAAACAAGCTTATGTGTTT+TGG | - | chr5_4:51701827-51701846 | None:intergenic | 30.0% |
| ATAGAAGCTTAACAAGACTT+TGG | + | chr5_4:51702229-51702248 | Msa0856710:intron | 30.0% | |
| GCAATCAATATATGAAGTAG+AGG | + | chr5_4:51702422-51702441 | Msa0856710:intron | 30.0% | |
| ! | CTATGTGAAAAGGATTTTGA+AGG | + | chr5_4:51702544-51702563 | Msa0856710:intron | 30.0% |
| TTCAAATACCCAATTTAGCA+AGG | + | chr5_4:51702736-51702755 | Msa0856710:intron | 30.0% | |
| TCAAATACCCAATTTAGCAA+GGG | + | chr5_4:51702737-51702756 | Msa0856710:intron | 30.0% | |
| !! | TCTACATGTTATTTCTTCTC+TGG | - | chr5_4:51702792-51702811 | None:intergenic | 30.0% |
| GTAACTTCTGCAAAAAATCA+CGG | + | chr5_4:51702887-51702906 | Msa0856710:intron | 30.0% | |
| TAGTGTTTGTGTAAGAATCA+CGG | - | chr5_4:51702920-51702939 | None:intergenic | 30.0% | |
| AAACAATTTAAGTGCGTGTT+TGG | - | chr5_4:51702948-51702967 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAGTACCGCATGA+TGG | + | chr5_4:51703169-51703188 | Msa0856710:three_prime_UTR | 30.0% |
| ACAAGAAACAAGTTAGAGGT+TGG | - | chr5_4:51700524-51700543 | None:intergenic | 35.0% | |
| TCTTGTCTTGTGTTTCTTTG+TGG | - | chr5_4:51700640-51700659 | None:intergenic | 35.0% | |
| !! | CCATGATTGGTTTCTCTATT+AGG | - | chr5_4:51700670-51700689 | None:intergenic | 35.0% |
| CCTAATAGAGAAACCAATCA+TGG | + | chr5_4:51700667-51700686 | Msa0856710:exon | 35.0% | |
| TCTCAAGCAGTAAAACACTT+CGG | + | chr5_4:51700815-51700834 | Msa0856710:CDS | 35.0% | |
| !! | AGTTCTTGATTTGGCTCTAA+GGG | - | chr5_4:51700854-51700873 | None:intergenic | 35.0% |
| !!! | AACGAGGTTTTTTCATCTTC+GGG | - | chr5_4:51700923-51700942 | None:intergenic | 35.0% |
| ATGAAAAAACCTCGTTACCT+AGG | + | chr5_4:51700927-51700946 | Msa0856710:CDS | 35.0% | |
| !! | AAGCTCAAATTTGATGATGG+TGG | - | chr5_4:51701052-51701071 | None:intergenic | 35.0% |
| ! | TTCCATCAACTTTTCCAACT+GGG | - | chr5_4:51701125-51701144 | None:intergenic | 35.0% |
| TTGATGGAAGAGAGTAATGA+TGG | + | chr5_4:51701136-51701155 | Msa0856710:CDS | 35.0% | |
| TGATGGAAGAGAGTAATGAT+GGG | + | chr5_4:51701137-51701156 | Msa0856710:CDS | 35.0% | |
| ATGAGTTTGTATATGGGTAG+CGG | + | chr5_4:51701181-51701200 | Msa0856710:CDS | 35.0% | |
| TTGAAATCCGCAACAAGAAA+AGG | - | chr5_4:51701496-51701515 | None:intergenic | 35.0% | |
| TGTTTAGCGTAGCATAGATA+AGG | - | chr5_4:51701949-51701968 | None:intergenic | 35.0% | |
| GGGATTTGAACTCAATTACT+TGG | + | chr5_4:51702101-51702120 | Msa0856710:intron | 35.0% | |
| AATACTCGTCGTTTACTTGT+TGG | + | chr5_4:51702674-51702693 | Msa0856710:intron | 35.0% | |
| CAAATACCCAATTTAGCAAG+GGG | + | chr5_4:51702738-51702757 | Msa0856710:intron | 35.0% | |
| ! | ATTTTGCCCCTTGCTAAATT+GGG | - | chr5_4:51702747-51702766 | None:intergenic | 35.0% |
| ! | TATTTTGCCCCTTGCTAAAT+TGG | - | chr5_4:51702748-51702767 | None:intergenic | 35.0% |
| TGTTTGGTATCACATTGAGT+AGG | + | chr5_4:51702815-51702834 | Msa0856710:intron | 35.0% | |
| GACTTTCTTCAATCTCCATT+GGG | - | chr5_4:51703110-51703129 | None:intergenic | 35.0% | |
| CCTAAGAGGAAATACTATTG+AGG | - | chr5_4:51703147-51703166 | None:intergenic | 35.0% | |
| CCTCAATAGTATTTCCTCTT+AGG | + | chr5_4:51703144-51703163 | Msa0856710:exon | 35.0% | |
| TGTACATTCTAACCATCATG+CGG | - | chr5_4:51703184-51703203 | None:intergenic | 35.0% | |
| !!! | GTAGTGCTTGATTTTGGTTA+CGG | + | chr5_4:51703350-51703369 | Msa0856710:three_prime_UTR | 35.0% |
| !! | AGTGTGGGTTATGAGTTTTG+TGG | - | chr5_4:51700584-51700603 | None:intergenic | 40.0% |
| CTCAAGCAGTAAAACACTTC+GGG | + | chr5_4:51700816-51700835 | Msa0856710:CDS | 40.0% | |
| AGTAAAACACTTCGGGCTTA+GGG | + | chr5_4:51700823-51700842 | Msa0856710:CDS | 40.0% | |
| !! | GAGTTCTTGATTTGGCTCTA+AGG | - | chr5_4:51700855-51700874 | None:intergenic | 40.0% |
| TTGGGCTTGAGTTCTTGATT+TGG | - | chr5_4:51700863-51700882 | None:intergenic | 40.0% | |
| CTTCCTAGTAGATTTACCCA+AGG | + | chr5_4:51700892-51700911 | Msa0856710:CDS | 40.0% | |
| GAACCTTGGGTAAATCTACT+AGG | - | chr5_4:51700898-51700917 | None:intergenic | 40.0% | |
| AAAAAACCTCGTTACCTAGG+AGG | + | chr5_4:51700930-51700949 | Msa0856710:CDS | 40.0% | |
| AAAAACCTCGTTACCTAGGA+GGG | + | chr5_4:51700931-51700950 | Msa0856710:CDS | 40.0% | |
| ATAAGGAACGTGGATGCTAA+GGG | + | chr5_4:51700968-51700987 | Msa0856710:CDS | 40.0% | |
| ! | AACTTTTCCAACTGGGCTTT+AGG | - | chr5_4:51701118-51701137 | None:intergenic | 40.0% |
| ! | CTTCCATCAACTTTTCCAAC+TGG | - | chr5_4:51701126-51701145 | None:intergenic | 40.0% |
| ATACTTATACATACCCCACG+AGG | - | chr5_4:51701256-51701275 | None:intergenic | 40.0% | |
| TTCGTTGTGGCGTTTCATAA+TGG | + | chr5_4:51701425-51701444 | Msa0856710:intron | 40.0% | |
| AATCGGGTCAAAAGAGAAAG+AGG | - | chr5_4:51701746-51701765 | None:intergenic | 40.0% | |
| CATAGATAAGGATGTTGCGT+TGG | - | chr5_4:51701937-51701956 | None:intergenic | 40.0% | |
| GTCAAACAGGCTATGTGAAA+AGG | + | chr5_4:51702534-51702553 | Msa0856710:intron | 40.0% | |
| ! | TTGTTCTCTAGCGGTTTGTT+AGG | - | chr5_4:51702578-51702597 | None:intergenic | 40.0% |
| AACTGCAAGTTGTTCTCTAG+CGG | - | chr5_4:51702587-51702606 | None:intergenic | 40.0% | |
| GGACTTTCTTCAATCTCCAT+TGG | - | chr5_4:51703111-51703130 | None:intergenic | 40.0% | |
| ! | GGTTGATTGGGTGAAAGTGT+GGG | - | chr5_4:51700599-51700618 | None:intergenic | 45.0% |
| TGGTTGATTGGGTGAAAGTG+TGG | - | chr5_4:51700600-51700619 | None:intergenic | 45.0% | |
| CCTATGGTGTTTCCCATGAT+TGG | - | chr5_4:51700683-51700702 | None:intergenic | 45.0% | |
| CCAATCATGGGAAACACCAT+AGG | + | chr5_4:51700680-51700699 | Msa0856710:exon | 45.0% | |
| CAGTAAAACACTTCGGGCTT+AGG | + | chr5_4:51700822-51700841 | Msa0856710:CDS | 45.0% | |
| TTCTAGTGGGATAAGGAACG+TGG | + | chr5_4:51700958-51700977 | Msa0856710:CDS | 45.0% | |
| GATAAGGAACGTGGATGCTA+AGG | + | chr5_4:51700967-51700986 | Msa0856710:CDS | 45.0% | |
| ! | AGCTTTGATAGGCCCTTTGA+TGG | + | chr5_4:51701067-51701086 | Msa0856710:CDS | 45.0% |
| GCTTTGATAGGCCCTTTGAT+GGG | + | chr5_4:51701068-51701087 | Msa0856710:CDS | 45.0% | |
| AGCCCAGTTGGAAAAGTTGA+TGG | + | chr5_4:51701120-51701139 | Msa0856710:CDS | 45.0% | |
| !! | AGAGAGTAATGATGGGTCTG+AGG | + | chr5_4:51701144-51701163 | Msa0856710:CDS | 45.0% |
| ! | AGTTTGTATATGGGTAGCGG+TGG | + | chr5_4:51701184-51701203 | Msa0856710:CDS | 45.0% |
| ! | AGCATGACGGTGATGTTTTG+CGG | + | chr5_4:51701218-51701237 | Msa0856710:CDS | 45.0% |
| AGTGGCTTGAAGTTTCGTTG+TGG | + | chr5_4:51701412-51701431 | Msa0856710:intron | 45.0% | |
| GACTTGCGTGAAATTGCATG+TGG | + | chr5_4:51701455-51701474 | Msa0856710:intron | 45.0% | |
| TTGCATGTGGTTGCAAAGAC+AGG | + | chr5_4:51701468-51701487 | Msa0856710:intron | 45.0% | |
| TGCATGTGGTTGCAAAGACA+GGG | + | chr5_4:51701469-51701488 | Msa0856710:intron | 45.0% | |
| ! | ACAGGGTCCTTTTCTTGTTG+CGG | + | chr5_4:51701486-51701505 | Msa0856710:intron | 45.0% |
| CCAAATGCCACGAGAATACA+AGG | - | chr5_4:51701576-51701595 | None:intergenic | 45.0% | |
| CCTTGTATTCTCGTGGCATT+TGG | + | chr5_4:51701573-51701592 | Msa0856710:intron | 45.0% | |
| ATTCTCGTGGCATTTGGCAA+AGG | + | chr5_4:51701579-51701598 | Msa0856710:intron | 45.0% | |
| ! | TCGTCGTTTACTTGTTGGTC+TGG | + | chr5_4:51702679-51702698 | Msa0856710:intron | 45.0% |
| !! | ACGAGTGAGTTTTAGCCCAA+TGG | + | chr5_4:51703092-51703111 | Msa0856710:CDS | 45.0% |
| TATTGAGGAGCTGCTTCAAC+AGG | - | chr5_4:51703132-51703151 | None:intergenic | 45.0% | |
| !!! | ATAAAAAATAAATAAACTTT+TGG | + | chr5_4:51701533-51701552 | Msa0856710:intron | 5.0% |
| !! | AATTATTACAAAATATTTAA+AGG | - | chr5_4:51701698-51701717 | None:intergenic | 5.0% |
| !! | TAAAAATAAAATATTATTGA+AGG | + | chr5_4:51701972-51701991 | Msa0856710:intron | 5.0% |
| !! | AAAAATAAAATATTATTGAA+GGG | + | chr5_4:51701973-51701992 | Msa0856710:intron | 5.0% |
| !!! | TTTATATTTTAATACTTAAT+TGG | + | chr5_4:51702158-51702177 | Msa0856710:intron | 5.0% |
| TCATCTTCGGGCTGAACCTT+GGG | - | chr5_4:51700911-51700930 | None:intergenic | 50.0% | |
| TTCATCTTCGGGCTGAACCT+TGG | - | chr5_4:51700912-51700931 | None:intergenic | 50.0% | |
| ! | CTAGGAGGGTACGTTCTAGT+GGG | + | chr5_4:51700945-51700964 | Msa0856710:CDS | 50.0% |
| GGGTACGTTCTAGTGGGATA+AGG | + | chr5_4:51700951-51700970 | Msa0856710:CDS | 50.0% | |
| ACCCTCATGGACCCATCAAA+GGG | - | chr5_4:51701082-51701101 | None:intergenic | 50.0% | |
| AAGCCTCATCTTCACCCTCA+TGG | - | chr5_4:51701095-51701114 | None:intergenic | 50.0% | |
| !! | GAGTAATGATGGGTCTGAGG+TGG | + | chr5_4:51701147-51701166 | Msa0856710:CDS | 50.0% |
| !! | TAATGATGGGTCTGAGGTGG+CGG | + | chr5_4:51701150-51701169 | Msa0856710:CDS | 50.0% |
| TACATACCCCACGAGGCTTT+CGG | - | chr5_4:51701249-51701268 | None:intergenic | 50.0% | |
| ACGTACCCTCCTAGGTAACG+AGG | - | chr5_4:51700939-51700958 | None:intergenic | 55.0% | |
| CCACTAGAACGTACCCTCCT+AGG | - | chr5_4:51700947-51700966 | None:intergenic | 55.0% | |
| ! | CCTAGGAGGGTACGTTCTAG+TGG | + | chr5_4:51700944-51700963 | Msa0856710:CDS | 55.0% |
| ! | GCCCTTTGATGGGTCCATGA+GGG | + | chr5_4:51701078-51701097 | Msa0856710:CDS | 55.0% |
| CACCCTCATGGACCCATCAA+AGG | - | chr5_4:51701083-51701102 | None:intergenic | 55.0% | |
| GGTCCATGAGGGTGAAGATG+AGG | + | chr5_4:51701089-51701108 | Msa0856710:CDS | 55.0% | |
| GAGGCTTCCTAAAGCCCAGT+TGG | + | chr5_4:51701108-51701127 | Msa0856710:CDS | 55.0% | |
| ! | TATGGGTAGCGGTGGTGATG+CGG | + | chr5_4:51701192-51701211 | Msa0856710:CDS | 55.0% |
| GGCTAAACCGAAAGCCTCGT+GGG | + | chr5_4:51701239-51701258 | Msa0856710:CDS | 55.0% | |
| GCTAAACCGAAAGCCTCGTG+GGG | + | chr5_4:51701240-51701259 | Msa0856710:CDS | 55.0% | |
| ! | GGCCCTTTGATGGGTCCATG+AGG | + | chr5_4:51701077-51701096 | Msa0856710:CDS | 60.0% |
| CGGCTAAACCGAAAGCCTCG+TGG | + | chr5_4:51701238-51701257 | Msa0856710:CDS | 60.0% | |
| GGTGATGCGGCGGAGCATGA+CGG | + | chr5_4:51701205-51701224 | Msa0856710:CDS | 65.0% | |
| ! | GGGTAGCGGTGGTGATGCGG+CGG | + | chr5_4:51701195-51701214 | Msa0856710:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 51700495 | 51703373 | 51700495 | ID=Msa0856710;Name=Msa0856710 |
| chr5_4 | mRNA | 51700495 | 51703373 | 51700495 | ID=Msa0856710-mRNA-1;Parent=Msa0856710;Name=Msa0856710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|2|221|212 |
| chr5_4 | exon | 51700495 | 51701261 | 51700495 | ID=Msa0856710-mRNA-1:exon:16093;Parent=Msa0856710-mRNA-1 |
| chr5_4 | exon | 51703090 | 51703373 | 51703090 | ID=Msa0856710-mRNA-1:exon:16094;Parent=Msa0856710-mRNA-1 |
| chr5_4 | five_prime_UTR | 51700495 | 51700685 | 51700495 | ID=Msa0856710-mRNA-1:five_prime_utr;Parent=Msa0856710-mRNA-1 |
| chr5_4 | CDS | 51700686 | 51701261 | 51700686 | ID=Msa0856710-mRNA-1:cds;Parent=Msa0856710-mRNA-1 |
| chr5_4 | CDS | 51703090 | 51703152 | 51703090 | ID=Msa0856710-mRNA-1:cds;Parent=Msa0856710-mRNA-1 |
| chr5_4 | three_prime_UTR | 51703153 | 51703373 | 51703153 | ID=Msa0856710-mRNA-1:three_prime_utr;Parent=Msa0856710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
