AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620620 MtrunA17_Chr5g0448531 99.379 161 1 0 1 161 1 161 6.03e-118 330
Msa0620620 MtrunA17_Chr5g0440601 78.906 128 27 0 34 161 11 138 9.92e-75 219
Msa0620620 MtrunA17_Chr1g0156591 54.610 141 64 0 1 141 1 141 1.84e-53 166
Msa0620620 MtrunA17_Chr7g0263061 43.478 138 78 0 2 139 3 140 6.43e-40 131
Msa0620620 MtrunA17_Chr8g0389621 43.478 138 78 0 2 139 3 140 6.43e-40 131
Msa0620620 MtrunA17_Chr8g0373311 37.195 164 93 2 1 159 1 159 3.24e-32 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620620 AT2G17380.1 91.925 161 13 0 1 161 1 161 1.00e-111 314
Msa0620620 AT4G35410.2 90.683 161 15 0 1 161 1 161 2.35e-109 308
Msa0620620 AT4G35410.1 91.837 98 8 0 1 98 1 98 8.86e-66 196
Msa0620620 AT1G47830.1 53.191 141 66 0 1 141 1 141 1.87e-52 164
Msa0620620 AT2G19790.1 42.754 138 79 0 2 139 3 140 6.11e-39 129
Msa0620620 AT3G50860.1 37.342 158 88 2 1 153 1 152 7.80e-31 109
Msa0620620 AT3G50860.2 37.857 140 82 1 1 135 1 140 1.24e-30 108

Find 55 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGTCGGTCAGTTTCTTTC+TGG 0.155545 4_2:+72284352 None:intergenic
GATATAAAGTTGTTTATAAA+AGG 0.214674 4_2:-72282769 Msa0620620:intron
TTATATGCGTTGCAATTCTA+TGG 0.222882 4_2:-72281557 Msa0620620:three_prime_UTR
GAGATTCTTGATCGGTATTT+TGG 0.252220 4_2:-72282565 Msa0620620:CDS
AATTTCATCAAGTATATAAT+AGG 0.297509 4_2:+72282007 None:intergenic
TCTAATTGCTGGCGAGCTTC+AGG 0.306112 4_2:-72281985 Msa0620620:CDS
CATTGTCTTTCAGGATTCAT+TGG 0.310542 4_2:-72281850 Msa0620620:intron
ATCGCACAAGCTACTAAATA+AGG 0.320939 4_2:-72281786 Msa0620620:exon
CTTCTTTCCTTCTGAGTGTA+AGG 0.334840 4_2:+72283027 None:intergenic
CTTGATGAAATTCTAATTGC+TGG 0.336106 4_2:-72281996 Msa0620620:CDS
GATCTATTTGCTTGAGGATC+AGG 0.339130 4_2:-72281470 Msa0620620:three_prime_UTR
CAATTTACAGGTCTGTGAAT+TGG 0.339292 4_2:-72282435 Msa0620620:intron
TTGAGGAATGGAGAAATGTT+TGG 0.395006 4_2:-72281684 Msa0620620:three_prime_UTR
GTTAGAAGAAGATGAAGATC+TGG 0.396544 4_2:+72284332 None:intergenic
CTCTACAAAATTACAGAGCT+TGG 0.403422 4_2:+72282799 None:intergenic
GCTTTGAGATTGAATTTCAT+TGG 0.424235 4_2:-72281426 Msa0620620:three_prime_UTR
AGATTAAGATGAATATACTT+TGG 0.432197 4_2:-72284454 Msa0620620:five_prime_UTR
TTGTTGAATTGAAATTGAAA+TGG 0.434484 4_2:+72284275 None:intergenic
GGAAGGTTAGGCTCACAAAA+TGG 0.441892 4_2:-72283056 Msa0620620:CDS
ATATCCGCTGTTGTAATTGT+TGG 0.443732 4_2:-72281711 Msa0620620:three_prime_UTR
TTGCTGTTATATATTTGTAC+TGG 0.446155 4_2:-72281747 Msa0620620:three_prime_UTR
TGATGATGCTGACAACGAAT+TGG 0.451575 4_2:-72282617 Msa0620620:CDS
CAGCGGATATCCTTACTTGA+TGG 0.456039 4_2:+72281724 None:intergenic
CTTGATATTCAACTTCCATA+AGG 0.468058 4_2:-72282411 Msa0620620:intron
GATAATATTACTCAAGGAAC+TGG 0.478446 4_2:+72281806 None:intergenic
TTAGTCGTCAAGGGAAGGTT+AGG 0.481414 4_2:-72283068 Msa0620620:CDS
TTTGTACTGGCCATCAAGTA+AGG 0.483903 4_2:-72281734 Msa0620620:three_prime_UTR
TATAACAGCAATTGCAACAT+TGG 0.485991 4_2:+72281759 None:intergenic
CACTCAGAAGGAAAGAAGTA+AGG 0.487202 4_2:-72283022 Msa0620620:intron
TAAGATGAATATACTTTGGA+GGG 0.496585 4_2:-72284450 Msa0620620:five_prime_UTR
AAAATCAAAATCAAAATCAA+TGG 0.504380 4_2:-72284198 Msa0620620:intron
TCTACAAAATTACAGAGCTT+GGG 0.509679 4_2:+72282800 None:intergenic
ATGCGTTGCAATTCTATGGA+TGG 0.526403 4_2:-72281553 Msa0620620:three_prime_UTR
GTGCTTCTCATTAGTCGTCA+AGG 0.528040 4_2:-72283078 Msa0620620:CDS
TTAAGATGAATATACTTTGG+AGG 0.532007 4_2:-72284451 Msa0620620:five_prime_UTR
TGCTCGGTTGATAGCTGCAC+AGG 0.540072 4_2:-72281943 Msa0620620:intron
TGTCTTTCAGGATTCATTGG+TGG 0.541167 4_2:-72281847 Msa0620620:intron
TGCTTCTCATTAGTCGTCAA+GGG 0.558103 4_2:-72283077 Msa0620620:CDS
AATTACAGAGCTTGGGAGCA+CGG 0.567062 4_2:+72282807 None:intergenic
GAATCACTCCACTGAGCTCA+CGG 0.569834 4_2:+72282834 None:intergenic
GGTGTTGATCTATTTGCTTG+AGG 0.579282 4_2:-72281476 Msa0620620:three_prime_UTR
TCTCATTAGTCGTCAAGGGA+AGG 0.585870 4_2:-72283073 Msa0620620:CDS
AGATGAATATACTTTGGAGG+GGG 0.599675 4_2:-72284448 Msa0620620:five_prime_UTR
TTGTGCGATAATATTACTCA+AGG 0.602166 4_2:+72281800 None:intergenic
ATTGGTGGAGACTGCTAAGG+AGG 0.602252 4_2:-72281832 Msa0620620:CDS
TTAGAAGAAGATGAAGATCT+GGG 0.603610 4_2:+72284333 None:intergenic
GTATTCACCTTACACTCAGA+AGG 0.607833 4_2:-72283034 Msa0620620:CDS
TTCATTGGTGGAGACTGCTA+AGG 0.613718 4_2:-72281835 Msa0620620:CDS
ATTCAACTTAACAATAAACA+TGG 0.633889 4_2:+72281623 None:intergenic
AAGAAGATGAAGATCTGGGT+CGG 0.649063 4_2:+72284337 None:intergenic
AAGATGAATATACTTTGGAG+GGG 0.650701 4_2:-72284449 Msa0620620:five_prime_UTR
AAGGTAATCCGTGAGCTCAG+TGG 0.653418 4_2:-72282842 Msa0620620:CDS
GTTTCTTTCTGGACTCACTG+TGG 0.659463 4_2:+72284363 None:intergenic
GCACAAGCTACTAAATAAGG+AGG 0.668635 4_2:-72281783 Msa0620620:exon
AATGCCAACAATTACAACAG+CGG 0.693532 4_2:+72281707 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAAAAATTTAAATACA+AGG + chr4_2:72282284-72282303 None:intergenic 10.0%
!! CAATAATAATAATAATAATC+AGG + chr4_2:72284319-72284338 None:intergenic 10.0%
!!! ATTGATTTTGATTTTGATTT+TGG + chr4_2:72281620-72281639 None:intergenic 15.0%
!! AAAATCAAAATCAAAATCAA+TGG - chr4_2:72281619-72281638 Msa0620620:three_prime_UTR 15.0%
!!! TATTTTCAAATAAAATGAGA+GGG + chr4_2:72282072-72282091 None:intergenic 15.0%
!!! TTATTTTCAAATAAAATGAG+AGG + chr4_2:72282073-72282092 None:intergenic 15.0%
!!! AATTGGATGTATTTTTTATA+CGG - chr4_2:72282403-72282422 Msa0620620:intron 15.0%
!! GATATAAAGTTGTTTATAAA+AGG - chr4_2:72283048-72283067 Msa0620620:CDS 15.0%
!! ATATTATATCCTTAAGAAAA+GGG + chr4_2:72283317-72283336 None:intergenic 15.0%
!! TATATTATATCCTTAAGAAA+AGG + chr4_2:72283318-72283337 None:intergenic 15.0%
!! TATATCCATAATTCAAAATA+AGG - chr4_2:72283451-72283470 Msa0620620:intron 15.0%
!! GAAATATATTACATTAAACT+TGG + chr4_2:72283625-72283644 None:intergenic 15.0%
!! AATTTCATCAAGTATATAAT+AGG + chr4_2:72283813-72283832 None:intergenic 15.0%
!! AGATTAAGATGAATATACTT+TGG - chr4_2:72281363-72281382 Msa0620620:three_prime_UTR 20.0%
!! TTGTTGAATTGAAATTGAAA+TGG + chr4_2:72281545-72281564 None:intergenic 20.0%
!! AAGCTCATAACTTATTTAAA+CGG - chr4_2:72281964-72281983 Msa0620620:CDS 20.0%
!!! TCTAAGAACTTTTAAATGAA+TGG - chr4_2:72282628-72282647 Msa0620620:CDS 20.0%
!! ATAAGAAATCCTATTAACAA+CGG + chr4_2:72282673-72282692 None:intergenic 20.0%
!! ATTATCTGTATGTATTAACA+TGG - chr4_2:72282863-72282882 Msa0620620:intron 20.0%
!!! ATCTCATATTTTTATTGACA+AGG - chr4_2:72282956-72282975 Msa0620620:intron 20.0%
!! TATTTCCATAATTCAAAACA+AGG - chr4_2:72283639-72283658 Msa0620620:intron 20.0%
!! ATTCAACTTAACAATAAACA+TGG + chr4_2:72284197-72284216 None:intergenic 20.0%
! TTAAGATGAATATACTTTGG+AGG - chr4_2:72281366-72281385 Msa0620620:three_prime_UTR 25.0%
! TAAGATGAATATACTTTGGA+GGG - chr4_2:72281367-72281386 Msa0620620:three_prime_UTR 25.0%
!!! ACTTGACTATCTCTTTTTTT+CGG + chr4_2:72281431-72281450 None:intergenic 25.0%
!!! TGAATAACCTTAGTTAGTTT+TGG - chr4_2:72281832-72281851 Msa0620620:CDS 25.0%
! TCACAAAAAAAAGACTCATT+CGG - chr4_2:72281923-72281942 Msa0620620:intron 25.0%
! AGCTCATAACTTATTTAAAC+GGG - chr4_2:72281965-72281984 Msa0620620:CDS 25.0%
!!! GTAGTGTTGATTAAAATTAG+CGG + chr4_2:72282143-72282162 None:intergenic 25.0%
! AATCACTTGAACACTTAAAT+TGG - chr4_2:72282386-72282405 Msa0620620:intron 25.0%
! ATTCCAAGTACAAAAATACA+AGG + chr4_2:72282561-72282580 None:intergenic 25.0%
!! AGAACTTTTAAATGAATGGT+AGG - chr4_2:72282632-72282651 Msa0620620:CDS 25.0%
! TAAGAAATCCTATTAACAAC+GGG + chr4_2:72282672-72282691 None:intergenic 25.0%
! TAATAAAGAGAATAAGCGAT+AGG + chr4_2:72282831-72282850 None:intergenic 25.0%
! ATCGCTTATTCTCTTTATTA+TGG - chr4_2:72282831-72282850 Msa0620620:CDS 25.0%
! AGATGTAAATACACATATCA+AGG + chr4_2:72282940-72282959 None:intergenic 25.0%
!! TGAAATGATTCATCATTTTG+TGG - chr4_2:72283230-72283249 Msa0620620:intron 25.0%
! GATATATATCGCATTAAACT+TGG + chr4_2:72283437-72283456 None:intergenic 25.0%
! GATTATTAATAGGAGTTACA+GGG + chr4_2:72283488-72283507 None:intergenic 25.0%
! TCCTATTAATAATCCTTTCA+TGG - chr4_2:72283494-72283513 Msa0620620:intron 25.0%
! ACCATGAAAGGATTATTAAT+AGG + chr4_2:72283498-72283517 None:intergenic 25.0%
! TATTAATAATCCTTTCATGG+TGG - chr4_2:72283497-72283516 Msa0620620:intron 25.0%
! GATTATTAATAGGAGTTACA+GGG + chr4_2:72283488-72283507 None:intergenic 25.0%
! TCCTATTAATAATCCTTTCA+TGG - chr4_2:72283494-72283513 Msa0620620:intron 25.0%
! ACCATGAAAGGATTATTAAT+AGG + chr4_2:72283498-72283517 None:intergenic 25.0%
! TATTAATAATCCTTTCATGG+TGG - chr4_2:72283497-72283516 Msa0620620:intron 25.0%
! CATGATTAAAAACAAAGAAC+AGG + chr4_2:72283785-72283804 None:intergenic 25.0%
!!! CTGTTCTTTGTTTTTAATCA+TGG - chr4_2:72283783-72283802 Msa0620620:intron 25.0%
!!! TCTTTGTTTTTAATCATGGA+AGG - chr4_2:72283787-72283806 Msa0620620:intron 25.0%
! AAGACAATGTCATACAAATT+TGG + chr4_2:72283956-72283975 None:intergenic 25.0%
!! TTGCTGTTATATATTTGTAC+TGG - chr4_2:72284070-72284089 Msa0620620:intron 25.0%
! AAGATGAATATACTTTGGAG+GGG - chr4_2:72281368-72281387 Msa0620620:three_prime_UTR 30.0%
GTGTTAAAATGAAAAAGGGA+GGG - chr4_2:72281391-72281410 Msa0620620:three_prime_UTR 30.0%
TTAGAAGAAGATGAAGATCT+GGG + chr4_2:72281487-72281506 None:intergenic 30.0%
TCAATCGAATGAAGTAACTA+AGG + chr4_2:72281815-72281834 None:intergenic 30.0%
CGATAATTGATGAGCTTATA+GGG + chr4_2:72282214-72282233 None:intergenic 30.0%
ACGATAATTGATGAGCTTAT+AGG + chr4_2:72282215-72282234 None:intergenic 30.0%
CTATGAATCATGACTAACTA+AGG + chr4_2:72282258-72282277 None:intergenic 30.0%
!! TCACCTTGTATTTTTGTACT+TGG - chr4_2:72282555-72282574 Msa0620620:intron 30.0%
AAGAAATCCTATTAACAACG+GGG + chr4_2:72282671-72282690 None:intergenic 30.0%
CACAAAGTGTATCTACATTT+AGG + chr4_2:72282722-72282741 None:intergenic 30.0%
! TATTAACATGGTGATAGTGA+TGG - chr4_2:72282875-72282894 Msa0620620:intron 30.0%
TCTACAAAATTACAGAGCTT+GGG + chr4_2:72283020-72283039 None:intergenic 30.0%
AGCAGATATTCATTATACCA+TGG + chr4_2:72283146-72283165 None:intergenic 30.0%
! ATTTTGTGGAGATTCTTGAT+CGG - chr4_2:72283244-72283263 Msa0620620:intron 30.0%
CTTGATATTCAACTTCCATA+AGG - chr4_2:72283406-72283425 Msa0620620:intron 30.0%
TTAAACTTGGACATACCTTA+TGG + chr4_2:72283424-72283443 None:intergenic 30.0%
!!! GTAGGCCTTATTTTGAATTA+TGG + chr4_2:72283459-72283478 None:intergenic 30.0%
GGATTATTAATAGGAGTTAC+AGG + chr4_2:72283489-72283508 None:intergenic 30.0%
GAATATAATGACAGGTGATA+TGG + chr4_2:72283552-72283571 None:intergenic 30.0%
ACTAGACTGAATATAATGAC+AGG + chr4_2:72283560-72283579 None:intergenic 30.0%
GGATTATTAATAGGAGTTAC+AGG + chr4_2:72283489-72283508 None:intergenic 30.0%
ACTAGACCAATAATAATGAC+AGG + chr4_2:72283748-72283767 None:intergenic 30.0%
CTTGATGAAATTCTAATTGC+TGG - chr4_2:72283821-72283840 Msa0620620:intron 30.0%
! TATCAATGGTCTTTCTCTTT+TGG - chr4_2:72283897-72283916 Msa0620620:intron 30.0%
! ATCAATGGTCTTTCTCTTTT+GGG - chr4_2:72283898-72283917 Msa0620620:intron 30.0%
TTTGTATGACATTGTCTTTC+AGG - chr4_2:72283958-72283977 Msa0620620:intron 30.0%
GATAATATTACTCAAGGAAC+TGG + chr4_2:72284014-72284033 None:intergenic 30.0%
TTGTGCGATAATATTACTCA+AGG + chr4_2:72284020-72284039 None:intergenic 30.0%
TATAACAGCAATTGCAACAT+TGG + chr4_2:72284061-72284080 None:intergenic 30.0%
! TTGTAATTGTTGGCATTTTG+AGG - chr4_2:72284116-72284135 Msa0620620:intron 30.0%
TTATATGCGTTGCAATTCTA+TGG - chr4_2:72284260-72284279 Msa0620620:five_prime_UTR 30.0%
!! GCTTTGAGATTGAATTTCAT+TGG - chr4_2:72284391-72284410 Msa0620620:five_prime_UTR 30.0%
! AGATGAATATACTTTGGAGG+GGG - chr4_2:72281369-72281388 Msa0620620:three_prime_UTR 35.0%
!! AGGGGGTGTTAAAATGAAAA+AGG - chr4_2:72281386-72281405 Msa0620620:three_prime_UTR 35.0%
!! GGGGGTGTTAAAATGAAAAA+GGG - chr4_2:72281387-72281406 Msa0620620:three_prime_UTR 35.0%
GGTGTTAAAATGAAAAAGGG+AGG - chr4_2:72281390-72281409 Msa0620620:three_prime_UTR 35.0%
GTTAGAAGAAGATGAAGATC+TGG + chr4_2:72281488-72281507 None:intergenic 35.0%
CGAAAGTAGAAGAAGAAGAA+AGG + chr4_2:72281657-72281676 None:intergenic 35.0%
ATCAAGTCTTAGGTTCTGTT+TGG - chr4_2:72281862-72281881 Msa0620620:intron 35.0%
! GCTTATAAGCTAGCTTATAG+CGG + chr4_2:72282187-72282206 None:intergenic 35.0%
! TTTTGACACCAAGTTTGACA+TGG - chr4_2:72282310-72282329 Msa0620620:intron 35.0%
!! TATACGGTGTCAACTTTTTG+CGG - chr4_2:72282419-72282438 Msa0620620:CDS 35.0%
AAAGAATGCTGTTATGTTGG+AGG + chr4_2:72282483-72282502 None:intergenic 35.0%
ACGAAAGAATGCTGTTATGT+TGG + chr4_2:72282486-72282505 None:intergenic 35.0%
ACAAGGTGAAAATCACTTTC+AGG + chr4_2:72282544-72282563 None:intergenic 35.0%
AGGATGTTTATCATGCAATG+TGG + chr4_2:72282920-72282939 None:intergenic 35.0%
CTCTACAAAATTACAGAGCT+TGG + chr4_2:72283021-72283040 None:intergenic 35.0%
! AGCTCTGTAATTTTGTAGAG+TGG - chr4_2:72283021-72283040 Msa0620620:intron 35.0%
! TGTAATTTTGTAGAGTGGAG+AGG - chr4_2:72283026-72283045 Msa0620620:CDS 35.0%
!! CAGCTTTATAGTCTTTTGCA+AGG - chr4_2:72283089-72283108 Msa0620620:CDS 35.0%
GCTTGATGTTTAATTGACCA+TGG - chr4_2:72283126-72283145 Msa0620620:intron 35.0%
! GAGATTCTTGATCGGTATTT+TGG - chr4_2:72283252-72283271 Msa0620620:intron 35.0%
! TTGAAGAGTCCCTTTTCTTA+AGG - chr4_2:72283305-72283324 Msa0620620:intron 35.0%
GTGTCACACTAACTTGATAA+TGG - chr4_2:72283351-72283370 Msa0620620:intron 35.0%
ATGGTCACTTGTCAATTTAC+AGG - chr4_2:72283370-72283389 Msa0620620:intron 35.0%
CAATTTACAGGTCTGTGAAT+TGG - chr4_2:72283382-72283401 Msa0620620:intron 35.0%
GGTGATATGGTCAATAATCA+AGG + chr4_2:72283539-72283558 None:intergenic 35.0%
AAACAAAGAACAGGTCAGAA+GGG + chr4_2:72283588-72283607 None:intergenic 35.0%
CATGATCACAAACAAAGAAC+AGG + chr4_2:72283597-72283616 None:intergenic 35.0%
! CTGTTCTTTGTTTGTGATCA+TGG - chr4_2:72283595-72283614 Msa0620620:intron 35.0%
! TCTTTGTTTGTGATCATGGA+AGG - chr4_2:72283599-72283618 Msa0620620:intron 35.0%
!!! GTAGGCCTTGTTTTGAATTA+TGG + chr4_2:72283647-72283666 None:intergenic 35.0%
AATAATAATGACAGGCGATG+TGG + chr4_2:72283740-72283759 None:intergenic 35.0%
ACATCGCCTGTCATTATTAT+TGG - chr4_2:72283739-72283758 Msa0620620:intron 35.0%
AAACAAAGAACAGGTCAGAA+GGG + chr4_2:72283588-72283607 None:intergenic 35.0%
AAAACAAAGAACAGGTCAGA+AGG + chr4_2:72283777-72283796 None:intergenic 35.0%
CATTGTCTTTCAGGATTCAT+TGG - chr4_2:72283967-72283986 Msa0620620:intron 35.0%
ATCGCACAAGCTACTAAATA+AGG - chr4_2:72284031-72284050 Msa0620620:intron 35.0%
ATATCCGCTGTTGTAATTGT+TGG - chr4_2:72284106-72284125 Msa0620620:intron 35.0%
AATGCCAACAATTACAACAG+CGG + chr4_2:72284113-72284132 None:intergenic 35.0%
!! ATTGTTGGCATTTTGAGGAA+TGG - chr4_2:72284121-72284140 Msa0620620:intron 35.0%
TTGAGGAATGGAGAAATGTT+TGG - chr4_2:72284133-72284152 Msa0620620:intron 35.0%
AAGAAGATGAAGATCTGGGT+CGG + chr4_2:72281483-72281502 None:intergenic 40.0%
CGCATCACCAAAACTAACTA+AGG + chr4_2:72281842-72281861 None:intergenic 40.0%
TAGGTTCTGTTTGGCAATGA+CGG - chr4_2:72281871-72281890 Msa0620620:intron 40.0%
!! TAAGCTAGCTTATAGCGGAT+AGG + chr4_2:72282182-72282201 None:intergenic 40.0%
TGACTAACTAAGGCTCTGTT+TGG + chr4_2:72282248-72282267 None:intergenic 40.0%
AACAGCATTCTTTCGTGTTC+TGG - chr4_2:72282490-72282509 Msa0620620:intron 40.0%
ACAGCATTCTTTCGTGTTCT+GGG - chr4_2:72282491-72282510 Msa0620620:intron 40.0%
TGCTTCTCATTAGTCGTCAA+GGG - chr4_2:72282740-72282759 Msa0620620:intron 40.0%
GTATTCACCTTACACTCAGA+AGG - chr4_2:72282783-72282802 Msa0620620:CDS 40.0%
CTTCTTTCCTTCTGAGTGTA+AGG + chr4_2:72282793-72282812 None:intergenic 40.0%
CACTCAGAAGGAAAGAAGTA+AGG - chr4_2:72282795-72282814 Msa0620620:CDS 40.0%
TTGCAAGGCAATCTTCTGTT+TGG - chr4_2:72283104-72283123 Msa0620620:intron 40.0%
! TGATGATGCTGACAACGAAT+TGG - chr4_2:72283200-72283219 Msa0620620:intron 40.0%
GGAGTTACAGGGAAATAAGT+AGG + chr4_2:72283477-72283496 None:intergenic 40.0%
TAATCAAGGCTCATTCAGTG+TGG + chr4_2:72283525-72283544 None:intergenic 40.0%
CAAACAAAGAACAGGTCAGA+AGG + chr4_2:72283589-72283608 None:intergenic 40.0%
GGAGTTACAGGGAATTAAGT+AGG + chr4_2:72283665-72283684 None:intergenic 40.0%
TAATTGAGGCTCATTCAGTG+TGG + chr4_2:72283713-72283732 None:intergenic 40.0%
CGAGCAAAAAAACTGTTGCT+CGG - chr4_2:72283858-72283877 Msa0620620:intron 40.0%
TGTCTTTCAGGATTCATTGG+TGG - chr4_2:72283970-72283989 Msa0620620:intron 40.0%
GCACAAGCTACTAAATAAGG+AGG - chr4_2:72284034-72284053 Msa0620620:intron 40.0%
! TTTGTACTGGCCATCAAGTA+AGG - chr4_2:72284083-72284102 Msa0620620:intron 40.0%
ATGCGTTGCAATTCTATGGA+TGG - chr4_2:72284264-72284283 Msa0620620:five_prime_UTR 40.0%
!! GGTGTTGATCTATTTGCTTG+AGG - chr4_2:72284341-72284360 Msa0620620:five_prime_UTR 40.0%
GATCTATTTGCTTGAGGATC+AGG - chr4_2:72284347-72284366 Msa0620620:five_prime_UTR 40.0%
GTTTCTTTCTGGACTCACTG+TGG + chr4_2:72281457-72281476 None:intergenic 45.0%
! TGGTGATGCGATCAAGTCTT+AGG - chr4_2:72281852-72281871 Msa0620620:intron 45.0%
ACCAAGTTTGACATGGACAC+TGG - chr4_2:72282317-72282336 Msa0620620:intron 45.0%
TCCAGTGTCCATGTCAAACT+TGG + chr4_2:72282321-72282340 None:intergenic 45.0%
GTGCTTCTCATTAGTCGTCA+AGG - chr4_2:72282739-72282758 Msa0620620:intron 45.0%
TCTCATTAGTCGTCAAGGGA+AGG - chr4_2:72282744-72282763 Msa0620620:intron 45.0%
TTAGTCGTCAAGGGAAGGTT+AGG - chr4_2:72282749-72282768 Msa0620620:intron 45.0%
GGAAGGTTAGGCTCACAAAA+TGG - chr4_2:72282761-72282780 Msa0620620:intron 45.0%
AATTACAGAGCTTGGGAGCA+CGG + chr4_2:72283013-72283032 None:intergenic 45.0%
GGCGATGTGGTCAATAATTG+AGG + chr4_2:72283727-72283746 None:intergenic 45.0%
GATAGCTGCACAGGTATCAA+TGG - chr4_2:72283883-72283902 Msa0620620:intron 45.0%
TTCATTGGTGGAGACTGCTA+AGG - chr4_2:72283982-72284001 Msa0620620:intron 45.0%
CAGCGGATATCCTTACTTGA+TGG + chr4_2:72284096-72284115 None:intergenic 45.0%
!! ATTATTATTATTATTATTGT+TGG - chr4_2:72284320-72284339 Msa0620620:five_prime_UTR 5.0%
TGGGTCGGTCAGTTTCTTTC+TGG + chr4_2:72281468-72281487 None:intergenic 50.0%
CCTATTAACAACGGGGAGAG+AGG + chr4_2:72282664-72282683 None:intergenic 50.0%
CCTCTCTCCCCGTTGTTAAT+AGG - chr4_2:72282661-72282680 Msa0620620:intron 50.0%
AAGGTAATCCGTGAGCTCAG+TGG - chr4_2:72282975-72282994 Msa0620620:intron 50.0%
GAATCACTCCACTGAGCTCA+CGG + chr4_2:72282986-72283005 None:intergenic 50.0%
CAGTGTGGATCCACCATGAA+AGG + chr4_2:72283510-72283529 None:intergenic 50.0%
CAGTGTGGATCCACCATGAA+AGG + chr4_2:72283510-72283529 None:intergenic 50.0%
TCTAATTGCTGGCGAGCTTC+AGG - chr4_2:72283832-72283851 Msa0620620:intron 50.0%
ATTGGTGGAGACTGCTAAGG+AGG - chr4_2:72283985-72284004 Msa0620620:intron 50.0%
!! TGCTCGGTTGATAGCTGCAC+AGG - chr4_2:72283874-72283893 Msa0620620:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 72281360 72284479 72281360 ID=Msa0620620;Name=Msa0620620
chr4_2 mRNA 72281360 72284479 72281360 ID=Msa0620620-mRNA-1;Parent=Msa0620620;Name=Msa0620620-mRNA-1;_AED=0.08;_eAED=0.08;_QI=278|1|1|1|0.83|0.85|7|428|161
chr4_2 exon 72281360 72281859 72281360 ID=Msa0620620-mRNA-1:exon:21511;Parent=Msa0620620-mRNA-1
chr4_2 exon 72281944 72282030 72281944 ID=Msa0620620-mRNA-1:exon:21510;Parent=Msa0620620-mRNA-1
chr4_2 exon 72282412 72282447 72282412 ID=Msa0620620-mRNA-1:exon:21509;Parent=Msa0620620-mRNA-1
chr4_2 exon 72282561 72282669 72282561 ID=Msa0620620-mRNA-1:exon:21508;Parent=Msa0620620-mRNA-1
chr4_2 exon 72282770 72282861 72282770 ID=Msa0620620-mRNA-1:exon:21507;Parent=Msa0620620-mRNA-1
chr4_2 exon 72283023 72283109 72283023 ID=Msa0620620-mRNA-1:exon:21506;Parent=Msa0620620-mRNA-1
chr4_2 exon 72284199 72284479 72284199 ID=Msa0620620-mRNA-1:exon:21505;Parent=Msa0620620-mRNA-1
chr4_2 five_prime_UTR 72284202 72284479 72284202 ID=Msa0620620-mRNA-1:five_prime_utr;Parent=Msa0620620-mRNA-1
chr4_2 CDS 72284199 72284201 72284199 ID=Msa0620620-mRNA-1:cds;Parent=Msa0620620-mRNA-1
chr4_2 CDS 72283023 72283109 72283023 ID=Msa0620620-mRNA-1:cds;Parent=Msa0620620-mRNA-1
chr4_2 CDS 72282770 72282861 72282770 ID=Msa0620620-mRNA-1:cds;Parent=Msa0620620-mRNA-1
chr4_2 CDS 72282561 72282669 72282561 ID=Msa0620620-mRNA-1:cds;Parent=Msa0620620-mRNA-1
chr4_2 CDS 72282412 72282447 72282412 ID=Msa0620620-mRNA-1:cds;Parent=Msa0620620-mRNA-1
chr4_2 CDS 72281944 72282030 72281944 ID=Msa0620620-mRNA-1:cds;Parent=Msa0620620-mRNA-1
chr4_2 CDS 72281788 72281859 72281788 ID=Msa0620620-mRNA-1:cds;Parent=Msa0620620-mRNA-1
chr4_2 three_prime_UTR 72281360 72281787 72281360 ID=Msa0620620-mRNA-1:three_prime_utr;Parent=Msa0620620-mRNA-1
Gene Sequence

>Msa0620620

ATGATACACTTTGTGCTTCTCATTAGTCGTCAAGGGAAGGTTAGGCTCACAAAATGGTATTCACCTTACACTCAGAAGGAAAGAAGTAAGGTAATCCGTGAGCTCAGTGGAGTGATTCTTAGCCGTGCTCCCAAGCTCTGTAATTTTGTAGAGTGGAGAGGATATAAAGTTGTTTATAAAAGATATGCTAGTCTATATTTCTGTATGTGTATTGATGATGCTGACAACGAATTGGAAGTACTTGAAATGATTCATCATTTTGTGGAGATTCTTGATCGGTATTTTGGCAGTGTCTGTGAATTGGACTTGATATTCAACTTCCATAAGGCCTATTATATACTTGATGAAATTCTAATTGCTGGCGAGCTTCAGGAGTCGAGCAAAAAAACTGTTGCTCGGTTGATAGCTGCACAGGATTCATTGGTGGAGACTGCTAAGGAGGAAGCCAGTTCCTTGAGTAATATTATCGCACAAGCTACTAAATAA

Protein sequence

>Msa0620620

MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILSRAPKLCNFVEWRGYKVVYKRYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATK*