Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816510 | XP_003616384.1 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 1.43e-141 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816510 | sp|Q6NLC8|Y1648_ARATH | 56.250 | 176 | 70 | 4 | 1 | 170 | 1 | 175 | 7.78e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816510 | G7KBN9 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 6.81e-142 | 404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051450 | Msa0816510 | 0.801680 | 8.032423e-49 | -8.615850e-47 |
| Msa0065680 | Msa0816510 | -0.823782 | 1.150836e-53 | -8.615850e-47 |
| Msa0078480 | Msa0816510 | 0.801162 | 1.025509e-48 | -8.615850e-47 |
| Msa0078610 | Msa0816510 | 0.804351 | 2.252334e-49 | -8.615850e-47 |
| Msa0615220 | Msa0816510 | 0.812782 | 3.565376e-51 | -8.615850e-47 |
| Msa0620620 | Msa0816510 | 0.818935 | 1.511447e-52 | -8.615850e-47 |
| Msa0704920 | Msa0816510 | 0.800989 | 1.112287e-48 | -8.615850e-47 |
| Msa0711150 | Msa0816510 | 0.806511 | 7.938968e-50 | -8.615850e-47 |
| Msa0737350 | Msa0816510 | 0.858824 | 6.316720e-63 | -8.615850e-47 |
| Msa0738030 | Msa0816510 | 0.819584 | 1.075727e-52 | -8.615850e-47 |
| Msa0779090 | Msa0816510 | 0.863298 | 2.751555e-64 | -8.615850e-47 |
| Msa0816510 | Msa0816540 | 0.992339 | 1.067518e-192 | -8.615850e-47 |
| Msa0816510 | Msa0830230 | 0.810636 | 1.044499e-50 | -8.615850e-47 |
| Msa0816510 | Msa0856710 | 0.936352 | 1.991962e-97 | -8.615850e-47 |
| Msa0816510 | Msa1002850 | 0.808964 | 2.390696e-50 | -8.615850e-47 |
| Msa0816510 | Msa1204530 | 0.803299 | 3.724458e-49 | -8.615850e-47 |
| Msa0816510 | Msa1204630 | 0.812127 | 4.957304e-51 | -8.615850e-47 |
| Msa0816510 | Msa1335710 | 0.803250 | 3.812703e-49 | -8.615850e-47 |
| Msa0816510 | Msa1376130 | 0.827337 | 1.653903e-54 | -8.615850e-47 |
| Msa0816510 | Msa1377570 | 0.826205 | 3.082398e-54 | -8.615850e-47 |
| Msa0816510 | Msa1389880 | 0.805332 | 1.404894e-49 | -8.615850e-47 |
| Msa0154840 | Msa0816510 | -0.804071 | 2.575348e-49 | -8.615850e-47 |
| Msa0187250 | Msa0816510 | 0.807922 | 3.988474e-50 | -8.615850e-47 |
| Msa0197660 | Msa0816510 | 0.811324 | 7.411377e-51 | -8.615850e-47 |
| Msa0378380 | Msa0816510 | 0.818944 | 1.504938e-52 | -8.615850e-47 |
| Msa0428050 | Msa0816510 | 0.800426 | 1.449291e-48 | -8.615850e-47 |
| Msa0438040 | Msa0816510 | 0.800545 | 1.370739e-48 | -8.615850e-47 |
| Msa0472960 | Msa0816510 | -0.813988 | 1.936465e-51 | -8.615850e-47 |
| Msa0239800 | Msa0816510 | 0.813813 | 2.116668e-51 | -8.615850e-47 |
| Msa0241140 | Msa0816510 | 0.821320 | 4.299771e-53 | -8.615850e-47 |
| Msa0277820 | Msa0816510 | 0.803922 | 2.765565e-49 | -8.615850e-47 |
| Msa0292170 | Msa0816510 | 0.800206 | 1.606473e-48 | -8.615850e-47 |
| Msa0311720 | Msa0816510 | 0.801654 | 8.129536e-49 | -8.615850e-47 |
| Msa0317510 | Msa0816510 | 0.807889 | 4.054801e-50 | -8.615850e-47 |
| Msa0518380 | Msa0816510 | 0.801823 | 7.506369e-49 | -8.615850e-47 |
| Msa0518560 | Msa0816510 | 0.807892 | 4.047642e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816510 | MtrunA17_Chr5g0435091 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 1.31e-145 | 404 |
| Msa0816510 | MtrunA17_Chr3g0111521 | 61.712 | 222 | 67 | 6 | 1 | 210 | 1 | 216 | 1.69e-79 | 236 |
| Msa0816510 | MtrunA17_Chr1g0160291 | 52.841 | 176 | 74 | 3 | 1 | 175 | 1 | 168 | 1.73e-56 | 178 |
| Msa0816510 | MtrunA17_Chr4g0044361 | 51.412 | 177 | 73 | 4 | 1 | 173 | 1 | 168 | 4.08e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816510 | AT1G66480.1 | 56.250 | 176 | 70 | 4 | 1 | 170 | 1 | 175 | 7.91e-60 | 187 |
| Msa0816510 | AT5G37840.1 | 51.196 | 209 | 85 | 5 | 1 | 198 | 1 | 203 | 2.38e-58 | 183 |
| Msa0816510 | AT2G01340.1 | 52.907 | 172 | 69 | 5 | 1 | 171 | 1 | 161 | 1.10e-53 | 171 |
| Msa0816510 | AT1G71015.1 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 3.68e-40 | 136 |
| Msa0816510 | AT1G71015.2 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 3.68e-40 | 136 |
Find 76 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATTGGTTTCTCTATT+AGG | 0.126642 | 5_3:+50887135 | None:intergenic |
| ACAACTTCGTTTGATGTTAT+TGG | 0.130160 | 5_3:+50887041 | None:intergenic |
| CCTCAATAGTATTTCCTCTT+AGG | 0.200768 | 5_3:-50884658 | Msa0816510:exon |
| GGTTGTATTTATATATATAT+TGG | 0.209013 | 5_3:+50887242 | None:intergenic |
| GAAGATTATGAGTTTGTATA+TGG | 0.218361 | 5_3:-50886628 | Msa0816510:CDS |
| ATATATGTAGTGCTTGATTT+TGG | 0.239755 | 5_3:-50884458 | Msa0816510:three_prime_UTR |
| CCTATGGTGTTTCCCATGAT+TGG | 0.278242 | 5_3:+50887122 | None:intergenic |
| GTTGTATTTATATATATATT+GGG | 0.310646 | 5_3:+50887243 | None:intergenic |
| GAGTTCTTGATTTGGCTCTA+AGG | 0.329180 | 5_3:+50886950 | None:intergenic |
| CATCAAATTTGAGCTTTGAT+AGG | 0.333943 | 5_3:-50886746 | Msa0816510:CDS |
| CAGTAAAACACTTCGGGCTT+AGG | 0.337959 | 5_3:-50886980 | Msa0816510:CDS |
| TCTTGTCTTGTGTTTCTTTG+TGG | 0.357395 | 5_3:+50887165 | None:intergenic |
| GCTAAGATTATGAAGATAGA+TGG | 0.365523 | 5_3:-50887086 | Msa0816510:CDS |
| CTCAAGCAGTAAAACACTTC+GGG | 0.366167 | 5_3:-50886986 | Msa0816510:CDS |
| AGCTTTGATAGGCCCTTTGA+TGG | 0.367331 | 5_3:-50886735 | Msa0816510:CDS |
| TTGGGCTTGAGTTCTTGATT+TGG | 0.367392 | 5_3:+50886942 | None:intergenic |
| TATATATATTGGGATTGTTA+TGG | 0.371220 | 5_3:+50887253 | None:intergenic |
| TACATACCCCACGAGGCTTT+CGG | 0.379415 | 5_3:+50886556 | None:intergenic |
| TTCATCTTCGGGCTGAACCT+TGG | 0.389122 | 5_3:+50886893 | None:intergenic |
| TCATCTTCGGGCTGAACCTT+GGG | 0.401043 | 5_3:+50886894 | None:intergenic |
| AGTTCTTGATTTGGCTCTAA+GGG | 0.425177 | 5_3:+50886951 | None:intergenic |
| GACTTTCTTCAATCTCCATT+GGG | 0.425939 | 5_3:+50884695 | None:intergenic |
| GGACTTTCTTCAATCTCCAT+TGG | 0.427544 | 5_3:+50884694 | None:intergenic |
| AGCCCAGTTGGAAAAGTTGA+TGG | 0.431835 | 5_3:-50886682 | Msa0816510:CDS |
| CTACATATATGATCTTCTAT+AGG | 0.447183 | 5_3:+50884471 | None:intergenic |
| AGTAAAACACTTCGGGCTTA+GGG | 0.449480 | 5_3:-50886979 | Msa0816510:CDS |
| TATTGAGGAGCTGCTTCAAC+AGG | 0.453324 | 5_3:+50884673 | None:intergenic |
| TTGATGGAAGAGAGTAATGA+TGG | 0.466806 | 5_3:-50886666 | Msa0816510:CDS |
| TGGTTGATTGGGTGAAAGTG+TGG | 0.471214 | 5_3:+50887205 | None:intergenic |
| CACTAACGAAATATCTGAAA+CGG | 0.473609 | 5_3:+50886779 | None:intergenic |
| GAATCAAGTAAAACATGGTT+GGG | 0.474525 | 5_3:+50887008 | None:intergenic |
| CCTAATAGAGAAACCAATCA+TGG | 0.475579 | 5_3:-50887135 | Msa0816510:exon |
| CCACTAGAACGTACCCTCCT+AGG | 0.477484 | 5_3:+50886858 | None:intergenic |
| AGAATCAAGTAAAACATGGT+TGG | 0.486013 | 5_3:+50887007 | None:intergenic |
| AGTAACAAGAAACAAGTTAG+AGG | 0.492403 | 5_3:+50887277 | None:intergenic |
| GAACCTTGGGTAAATCTACT+AGG | 0.494957 | 5_3:+50886907 | None:intergenic |
| TAATGATGGGTCTGAGGTGG+CGG | 0.497077 | 5_3:-50886652 | Msa0816510:CDS |
| CACCCTCATGGACCCATCAA+AGG | 0.503885 | 5_3:+50886722 | None:intergenic |
| GATAAGGAACGTGGATGCTA+AGG | 0.505115 | 5_3:-50886835 | Msa0816510:CDS |
| GGGTACGTTCTAGTGGGATA+AGG | 0.513180 | 5_3:-50886851 | Msa0816510:CDS |
| AAGATTATGAGTTTGTATAT+GGG | 0.514266 | 5_3:-50886627 | Msa0816510:CDS |
| AAGCCTCATCTTCACCCTCA+TGG | 0.515255 | 5_3:+50886710 | None:intergenic |
| ATGAGTTTGTATATGGGTAG+CGG | 0.520469 | 5_3:-50886621 | Msa0816510:CDS |
| ACCCTCATGGACCCATCAAA+GGG | 0.521258 | 5_3:+50886723 | None:intergenic |
| TCAAAGCTCAAATTTGATGA+TGG | 0.527565 | 5_3:+50886750 | None:intergenic |
| CCTAGGAGGGTACGTTCTAG+TGG | 0.533099 | 5_3:-50886858 | Msa0816510:CDS |
| GGTTGATTGGGTGAAAGTGT+GGG | 0.533520 | 5_3:+50887206 | None:intergenic |
| AAGCTCAAATTTGATGATGG+TGG | 0.537750 | 5_3:+50886753 | None:intergenic |
| ACAAGAAACAAGTTAGAGGT+TGG | 0.541035 | 5_3:+50887281 | None:intergenic |
| GGCTAAACCGAAAGCCTCGT+GGG | 0.541410 | 5_3:-50886563 | Msa0816510:CDS |
| GCTTTGATAGGCCCTTTGAT+GGG | 0.547818 | 5_3:-50886734 | Msa0816510:CDS |
| CCTAAGAGGAAATACTATTG+AGG | 0.556467 | 5_3:+50884658 | None:intergenic |
| GAGGCTTCCTAAAGCCCAGT+TGG | 0.560896 | 5_3:-50886694 | Msa0816510:CDS |
| TCTCAAGCAGTAAAACACTT+CGG | 0.563644 | 5_3:-50886987 | Msa0816510:CDS |
| CCAATCATGGGAAACACCAT+AGG | 0.564589 | 5_3:-50887122 | Msa0816510:exon |
| GGCCCTTTGATGGGTCCATG+AGG | 0.590646 | 5_3:-50886725 | Msa0816510:CDS |
| GGTCCATGAGGGTGAAGATG+AGG | 0.594224 | 5_3:-50886713 | Msa0816510:CDS |
| CTTGAGAATCAAGTAAAACA+TGG | 0.599048 | 5_3:+50887003 | None:intergenic |
| CTTCCTAGTAGATTTACCCA+AGG | 0.604663 | 5_3:-50886910 | Msa0816510:CDS |
| CTAATAGAGAAACCAATCAT+GGG | 0.606619 | 5_3:-50887134 | Msa0816510:exon |
| GGGTAGCGGTGGTGATGCGG+CGG | 0.614054 | 5_3:-50886607 | Msa0816510:CDS |
| ATAAGGAACGTGGATGCTAA+GGG | 0.617148 | 5_3:-50886834 | Msa0816510:CDS |
| GCCCTTTGATGGGTCCATGA+GGG | 0.621686 | 5_3:-50886724 | Msa0816510:CDS |
| CGGCTAAACCGAAAGCCTCG+TGG | 0.624658 | 5_3:-50886564 | Msa0816510:CDS |
| CTAGGAGGGTACGTTCTAGT+GGG | 0.625082 | 5_3:-50886857 | Msa0816510:CDS |
| GGTGATGCGGCGGAGCATGA+CGG | 0.634118 | 5_3:-50886597 | Msa0816510:CDS |
| TATGGGTAGCGGTGGTGATG+CGG | 0.636003 | 5_3:-50886610 | Msa0816510:CDS |
| GAGTAATGATGGGTCTGAGG+TGG | 0.637797 | 5_3:-50886655 | Msa0816510:CDS |
| AGAGAGTAATGATGGGTCTG+AGG | 0.645019 | 5_3:-50886658 | Msa0816510:CDS |
| TGATGGAAGAGAGTAATGAT+GGG | 0.646933 | 5_3:-50886665 | Msa0816510:CDS |
| TTCTAGTGGGATAAGGAACG+TGG | 0.684266 | 5_3:-50886844 | Msa0816510:CDS |
| GCTAAACCGAAAGCCTCGTG+GGG | 0.689080 | 5_3:-50886562 | Msa0816510:intron |
| TGTACATTCTAACCATCATG+CGG | 0.714217 | 5_3:+50884621 | None:intergenic |
| AGTTTGTATATGGGTAGCGG+TGG | 0.722789 | 5_3:-50886618 | Msa0816510:CDS |
| ACGTACCCTCCTAGGTAACG+AGG | 0.744483 | 5_3:+50886866 | None:intergenic |
| ATACTTATACATACCCCACG+AGG | 0.764323 | 5_3:+50886549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGTATTTATATATATATT+GGG | + | chr5_3:50884518-50884537 | None:intergenic | 10.0% |
| !!! | TTTTGTAATAATTTCTTTTA+TGG | - | chr5_3:50885661-50885680 | Msa0816510:intron | 10.0% |
| !! | GGTTGTATTTATATATATAT+TGG | + | chr5_3:50884519-50884538 | None:intergenic | 15.0% |
| !!! | TTTTGTTGTTATTATTATCT+TGG | - | chr5_3:50885250-50885269 | Msa0816510:intron | 15.0% |
| !! | AATACAAGGAAAAAAAAATA+AGG | + | chr5_3:50885518-50885537 | None:intergenic | 15.0% |
| !!! | AACTCAATTACTTTTTTTTA+GGG | - | chr5_3:50886037-50886056 | Msa0816510:intron | 15.0% |
| !!! | ATTTTACTTGCTTAAAAATT+AGG | + | chr5_3:50886448-50886467 | None:intergenic | 15.0% |
| !! | TATATATATTGGGATTGTTA+TGG | + | chr5_3:50884508-50884527 | None:intergenic | 20.0% |
| !! | AAGATTATGAGTTTGTATAT+GGG | - | chr5_3:50885131-50885150 | Msa0816510:intron | 20.0% |
| !! | AAAATAACATTCTTTCAAAG+TGG | - | chr5_3:50885350-50885369 | Msa0816510:intron | 20.0% |
| !!! | CCGATTTTTTAATTACTTAA+GGG | + | chr5_3:50885570-50885589 | None:intergenic | 20.0% |
| !! | CCCTTAAGTAATTAAAAAAT+CGG | - | chr5_3:50885567-50885586 | Msa0816510:intron | 20.0% |
| !!! | ATTTCTTTTATGGTTTTTCT+AGG | - | chr5_3:50885671-50885690 | Msa0816510:intron | 20.0% |
| !! | TAAATCAAATGAAGGAAAAT+CGG | + | chr5_3:50885719-50885738 | None:intergenic | 20.0% |
| !! | AAGAAGAATAAATCAAATGA+AGG | + | chr5_3:50885727-50885746 | None:intergenic | 20.0% |
| !!! | GAACTCAATTACTTTTTTTT+AGG | - | chr5_3:50886036-50886055 | Msa0816510:intron | 20.0% |
| !!! | AAGACTTTGGATTTTAATAA+AGG | - | chr5_3:50886198-50886217 | Msa0816510:intron | 20.0% |
| !! | ACTACTCACTATATATTTAA+GGG | + | chr5_3:50886252-50886271 | None:intergenic | 20.0% |
| !! | AACTACTCACTATATATTTA+AGG | + | chr5_3:50886253-50886272 | None:intergenic | 20.0% |
| !!! | CATATATTGATTGCATTTTA+AGG | + | chr5_3:50886372-50886391 | None:intergenic | 20.0% |
| !!! | AAACTTATTAAAGGAGATTT+TGG | - | chr5_3:50886665-50886684 | Msa0816510:CDS | 20.0% |
| !!! | AATAACATGTAGATTTTGTT+TGG | - | chr5_3:50886755-50886774 | Msa0816510:CDS | 20.0% |
| !!! | ATTAGATAGTTTCCTATTTT+AGG | - | chr5_3:50886958-50886977 | Msa0816510:CDS | 20.0% |
| !! | AATAACTTAGTACCTAAAAT+AGG | + | chr5_3:50886973-50886992 | None:intergenic | 20.0% |
| !!! | AATTCATTAACACAATTTTG+TGG | + | chr5_3:50886999-50887018 | None:intergenic | 20.0% |
| !! | TACTAAAAAAAAAACCTAAG+AGG | + | chr5_3:50887117-50887136 | None:intergenic | 20.0% |
| !! | ATTTTTGTGTTTGGTTGATT+GGG | + | chr5_3:50884567-50884586 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTTTGGTTGAT+TGG | + | chr5_3:50884568-50884587 | None:intergenic | 25.0% |
| !!! | TGGTTTTGTATTTTTGTGTT+TGG | + | chr5_3:50884576-50884595 | None:intergenic | 25.0% |
| !! | TATTGGAGTTTTTACTTTGA+AGG | + | chr5_3:50884703-50884722 | None:intergenic | 25.0% |
| !! | ACTAGGAAGTAAATTTTCTT+GGG | + | chr5_3:50884837-50884856 | None:intergenic | 25.0% |
| !! | TACTAGGAAGTAAATTTTCT+TGG | + | chr5_3:50884838-50884857 | None:intergenic | 25.0% |
| ! | GAAGATTATGAGTTTGTATA+TGG | - | chr5_3:50885130-50885149 | Msa0816510:intron | 25.0% |
| !!! | GCCGATTTTTTAATTACTTA+AGG | + | chr5_3:50885571-50885590 | None:intergenic | 25.0% |
| ! | AAATCAAATGAAGGAAAATC+GGG | + | chr5_3:50885718-50885737 | None:intergenic | 25.0% |
| ! | AGCACATATAGTAGAAAAAT+TGG | + | chr5_3:50885808-50885827 | None:intergenic | 25.0% |
| ! | ATGATAAAACTAGACATGAT+AGG | + | chr5_3:50885866-50885885 | None:intergenic | 25.0% |
| ! | TTCATGTTAGAATTCGAATT+TGG | - | chr5_3:50885972-50885991 | Msa0816510:intron | 25.0% |
| ! | TTTAATGTATAGTTTCTTCG+TGG | - | chr5_3:50886415-50886434 | Msa0816510:intron | 25.0% |
| ! | TACTTCAAATAATGTCAAAC+AGG | - | chr5_3:50886477-50886496 | Msa0816510:intron | 25.0% |
| ! | GGCACAATAAAACTTATTAA+AGG | - | chr5_3:50886656-50886675 | Msa0816510:CDS | 25.0% |
| ! | CTACATATATGATCTTCTAT+AGG | + | chr5_3:50887290-50887309 | None:intergenic | 25.0% |
| !! | ATATATGTAGTGCTTGATTT+TGG | - | chr5_3:50887300-50887319 | Msa0816510:five_prime_UTR | 25.0% |
| AGTAACAAGAAACAAGTTAG+AGG | + | chr5_3:50884484-50884503 | None:intergenic | 30.0% | |
| CTAATAGAGAAACCAATCAT+GGG | - | chr5_3:50884624-50884643 | Msa0816510:three_prime_UTR | 30.0% | |
| !!! | AGCTTTTTTGCTTTTTCCTA+TGG | + | chr5_3:50884655-50884674 | None:intergenic | 30.0% |
| GCTAAGATTATGAAGATAGA+TGG | - | chr5_3:50884672-50884691 | Msa0816510:CDS | 30.0% | |
| ACAACTTCGTTTGATGTTAT+TGG | + | chr5_3:50884720-50884739 | None:intergenic | 30.0% | |
| GAATCAAGTAAAACATGGTT+GGG | + | chr5_3:50884753-50884772 | None:intergenic | 30.0% | |
| AGAATCAAGTAAAACATGGT+TGG | + | chr5_3:50884754-50884773 | None:intergenic | 30.0% | |
| CTTGAGAATCAAGTAAAACA+TGG | + | chr5_3:50884758-50884777 | None:intergenic | 30.0% | |
| !!! | TAACGAGGTTTTTTCATCTT+CGG | + | chr5_3:50884880-50884899 | None:intergenic | 30.0% |
| CACTAACGAAATATCTGAAA+CGG | + | chr5_3:50884982-50885001 | None:intergenic | 30.0% | |
| TCAAAGCTCAAATTTGATGA+TGG | + | chr5_3:50885011-50885030 | None:intergenic | 30.0% | |
| ! | CATCAAATTTGAGCTTTGAT+AGG | - | chr5_3:50885012-50885031 | Msa0816510:intron | 30.0% |
| !!! | TTTTTTTCCTTGTATTCTCG+TGG | - | chr5_3:50885522-50885541 | Msa0816510:intron | 30.0% |
| ! | GAAAACAAGCTTATGTGTTT+TGG | + | chr5_3:50885783-50885802 | None:intergenic | 30.0% |
| ATAGAAGCTTAACAAGACTT+TGG | - | chr5_3:50886185-50886204 | Msa0816510:intron | 30.0% | |
| GCAATCAATATATGAAGTAG+AGG | - | chr5_3:50886378-50886397 | Msa0816510:intron | 30.0% | |
| ! | CTATGTGAAAAGGATTTTGA+AGG | - | chr5_3:50886500-50886519 | Msa0816510:intron | 30.0% |
| TTCAAATACCCAATTTAGCA+AGG | - | chr5_3:50886692-50886711 | Msa0816510:CDS | 30.0% | |
| TCAAATACCCAATTTAGCAA+GGG | - | chr5_3:50886693-50886712 | Msa0816510:CDS | 30.0% | |
| !! | TCTACATGTTATTTCTTCTC+TGG | + | chr5_3:50886748-50886767 | None:intergenic | 30.0% |
| GTAACTTCTGCAAAAAATCA+CGG | - | chr5_3:50886843-50886862 | Msa0816510:CDS | 30.0% | |
| TAGTGTTTGTGTAAGAATCA+CGG | + | chr5_3:50886876-50886895 | None:intergenic | 30.0% | |
| AAACAATTTAAGTGCGTGTT+TGG | + | chr5_3:50886904-50886923 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAGTACCGCATGA+TGG | - | chr5_3:50887125-50887144 | Msa0816510:exon | 30.0% |
| ACAAGAAACAAGTTAGAGGT+TGG | + | chr5_3:50884480-50884499 | None:intergenic | 35.0% | |
| TCTTGTCTTGTGTTTCTTTG+TGG | + | chr5_3:50884596-50884615 | None:intergenic | 35.0% | |
| !! | CCATGATTGGTTTCTCTATT+AGG | + | chr5_3:50884626-50884645 | None:intergenic | 35.0% |
| CCTAATAGAGAAACCAATCA+TGG | - | chr5_3:50884623-50884642 | Msa0816510:three_prime_UTR | 35.0% | |
| TCTCAAGCAGTAAAACACTT+CGG | - | chr5_3:50884771-50884790 | Msa0816510:intron | 35.0% | |
| !! | AGTTCTTGATTTGGCTCTAA+GGG | + | chr5_3:50884810-50884829 | None:intergenic | 35.0% |
| !!! | AACGAGGTTTTTTCATCTTC+GGG | + | chr5_3:50884879-50884898 | None:intergenic | 35.0% |
| ATGAAAAAACCTCGTTACCT+AGG | - | chr5_3:50884883-50884902 | Msa0816510:intron | 35.0% | |
| !! | AAGCTCAAATTTGATGATGG+TGG | + | chr5_3:50885008-50885027 | None:intergenic | 35.0% |
| ! | TTCCATCAACTTTTCCAACT+GGG | + | chr5_3:50885081-50885100 | None:intergenic | 35.0% |
| TTGATGGAAGAGAGTAATGA+TGG | - | chr5_3:50885092-50885111 | Msa0816510:intron | 35.0% | |
| TGATGGAAGAGAGTAATGAT+GGG | - | chr5_3:50885093-50885112 | Msa0816510:intron | 35.0% | |
| ATGAGTTTGTATATGGGTAG+CGG | - | chr5_3:50885137-50885156 | Msa0816510:intron | 35.0% | |
| TTGAAATCCGCAACAAGAAA+AGG | + | chr5_3:50885452-50885471 | None:intergenic | 35.0% | |
| TGTTTAGCGTAGCATAGATA+AGG | + | chr5_3:50885905-50885924 | None:intergenic | 35.0% | |
| GGGATTTGAACTCAATTACT+TGG | - | chr5_3:50886057-50886076 | Msa0816510:intron | 35.0% | |
| AATACTCGTCGTTTACTTGT+TGG | - | chr5_3:50886630-50886649 | Msa0816510:CDS | 35.0% | |
| CAAATACCCAATTTAGCAAG+GGG | - | chr5_3:50886694-50886713 | Msa0816510:CDS | 35.0% | |
| ! | ATTTTGCCCCTTGCTAAATT+GGG | + | chr5_3:50886703-50886722 | None:intergenic | 35.0% |
| ! | TATTTTGCCCCTTGCTAAAT+TGG | + | chr5_3:50886704-50886723 | None:intergenic | 35.0% |
| TGTTTGGTATCACATTGAGT+AGG | - | chr5_3:50886771-50886790 | Msa0816510:CDS | 35.0% | |
| GACTTTCTTCAATCTCCATT+GGG | + | chr5_3:50887066-50887085 | None:intergenic | 35.0% | |
| CCTAAGAGGAAATACTATTG+AGG | + | chr5_3:50887103-50887122 | None:intergenic | 35.0% | |
| CCTCAATAGTATTTCCTCTT+AGG | - | chr5_3:50887100-50887119 | Msa0816510:CDS | 35.0% | |
| TGTACATTCTAACCATCATG+CGG | + | chr5_3:50887140-50887159 | None:intergenic | 35.0% | |
| !!! | GTAGTGCTTGATTTTGGTTA+CGG | - | chr5_3:50887306-50887325 | Msa0816510:five_prime_UTR | 35.0% |
| !! | AGTGTGGGTTATGAGTTTTG+TGG | + | chr5_3:50884540-50884559 | None:intergenic | 40.0% |
| CTCAAGCAGTAAAACACTTC+GGG | - | chr5_3:50884772-50884791 | Msa0816510:intron | 40.0% | |
| AGTAAAACACTTCGGGCTTA+GGG | - | chr5_3:50884779-50884798 | Msa0816510:intron | 40.0% | |
| !! | GAGTTCTTGATTTGGCTCTA+AGG | + | chr5_3:50884811-50884830 | None:intergenic | 40.0% |
| TTGGGCTTGAGTTCTTGATT+TGG | + | chr5_3:50884819-50884838 | None:intergenic | 40.0% | |
| CTTCCTAGTAGATTTACCCA+AGG | - | chr5_3:50884848-50884867 | Msa0816510:intron | 40.0% | |
| GAACCTTGGGTAAATCTACT+AGG | + | chr5_3:50884854-50884873 | None:intergenic | 40.0% | |
| AAAAAACCTCGTTACCTAGG+AGG | - | chr5_3:50884886-50884905 | Msa0816510:intron | 40.0% | |
| AAAAACCTCGTTACCTAGGA+GGG | - | chr5_3:50884887-50884906 | Msa0816510:intron | 40.0% | |
| ATAAGGAACGTGGATGCTAA+GGG | - | chr5_3:50884924-50884943 | Msa0816510:intron | 40.0% | |
| ! | AACTTTTCCAACTGGGCTTT+AGG | + | chr5_3:50885074-50885093 | None:intergenic | 40.0% |
| ! | CTTCCATCAACTTTTCCAAC+TGG | + | chr5_3:50885082-50885101 | None:intergenic | 40.0% |
| ATACTTATACATACCCCACG+AGG | + | chr5_3:50885212-50885231 | None:intergenic | 40.0% | |
| TTCGTTGTGGCGTTTCATAA+TGG | - | chr5_3:50885381-50885400 | Msa0816510:intron | 40.0% | |
| AATCGGGTCAAAAGAGAAAG+AGG | + | chr5_3:50885702-50885721 | None:intergenic | 40.0% | |
| CATAGATAAGGATGTTGCGT+TGG | + | chr5_3:50885893-50885912 | None:intergenic | 40.0% | |
| GTCAAACAGGCTATGTGAAA+AGG | - | chr5_3:50886490-50886509 | Msa0816510:intron | 40.0% | |
| ! | TTGTTCTCTAGCGGTTTGTT+AGG | + | chr5_3:50886534-50886553 | None:intergenic | 40.0% |
| AACTGCAAGTTGTTCTCTAG+CGG | + | chr5_3:50886543-50886562 | None:intergenic | 40.0% | |
| GGACTTTCTTCAATCTCCAT+TGG | + | chr5_3:50887067-50887086 | None:intergenic | 40.0% | |
| ! | GGTTGATTGGGTGAAAGTGT+GGG | + | chr5_3:50884555-50884574 | None:intergenic | 45.0% |
| TGGTTGATTGGGTGAAAGTG+TGG | + | chr5_3:50884556-50884575 | None:intergenic | 45.0% | |
| CCTATGGTGTTTCCCATGAT+TGG | + | chr5_3:50884639-50884658 | None:intergenic | 45.0% | |
| CCAATCATGGGAAACACCAT+AGG | - | chr5_3:50884636-50884655 | Msa0816510:three_prime_UTR | 45.0% | |
| CAGTAAAACACTTCGGGCTT+AGG | - | chr5_3:50884778-50884797 | Msa0816510:intron | 45.0% | |
| TTCTAGTGGGATAAGGAACG+TGG | - | chr5_3:50884914-50884933 | Msa0816510:intron | 45.0% | |
| GATAAGGAACGTGGATGCTA+AGG | - | chr5_3:50884923-50884942 | Msa0816510:intron | 45.0% | |
| ! | AGCTTTGATAGGCCCTTTGA+TGG | - | chr5_3:50885023-50885042 | Msa0816510:intron | 45.0% |
| GCTTTGATAGGCCCTTTGAT+GGG | - | chr5_3:50885024-50885043 | Msa0816510:intron | 45.0% | |
| AGCCCAGTTGGAAAAGTTGA+TGG | - | chr5_3:50885076-50885095 | Msa0816510:intron | 45.0% | |
| !! | AGAGAGTAATGATGGGTCTG+AGG | - | chr5_3:50885100-50885119 | Msa0816510:intron | 45.0% |
| ! | AGTTTGTATATGGGTAGCGG+TGG | - | chr5_3:50885140-50885159 | Msa0816510:intron | 45.0% |
| ! | AGCATGACGGTGATGTTTTG+CGG | - | chr5_3:50885174-50885193 | Msa0816510:intron | 45.0% |
| AGTGGCTTGAAGTTTCGTTG+TGG | - | chr5_3:50885368-50885387 | Msa0816510:intron | 45.0% | |
| GACTTGCGTGAAATTGCATG+TGG | - | chr5_3:50885411-50885430 | Msa0816510:intron | 45.0% | |
| TTGCATGTGGTTGCAAAGAC+AGG | - | chr5_3:50885424-50885443 | Msa0816510:intron | 45.0% | |
| TGCATGTGGTTGCAAAGACA+GGG | - | chr5_3:50885425-50885444 | Msa0816510:intron | 45.0% | |
| ! | ACAGGGTCCTTTTCTTGTTG+CGG | - | chr5_3:50885442-50885461 | Msa0816510:intron | 45.0% |
| CCAAATGCCACGAGAATACA+AGG | + | chr5_3:50885532-50885551 | None:intergenic | 45.0% | |
| CCTTGTATTCTCGTGGCATT+TGG | - | chr5_3:50885529-50885548 | Msa0816510:intron | 45.0% | |
| ATTCTCGTGGCATTTGGCAA+AGG | - | chr5_3:50885535-50885554 | Msa0816510:intron | 45.0% | |
| ! | TCGTCGTTTACTTGTTGGTC+TGG | - | chr5_3:50886635-50886654 | Msa0816510:CDS | 45.0% |
| !! | ACGAGTGAGTTTTAGCCCAA+TGG | - | chr5_3:50887048-50887067 | Msa0816510:CDS | 45.0% |
| TATTGAGGAGCTGCTTCAAC+AGG | + | chr5_3:50887088-50887107 | None:intergenic | 45.0% | |
| !!! | ATAAAAAATAAATAAACTTT+TGG | - | chr5_3:50885489-50885508 | Msa0816510:intron | 5.0% |
| !! | AATTATTACAAAATATTTAA+AGG | + | chr5_3:50885654-50885673 | None:intergenic | 5.0% |
| !! | TAAAAATAAAATATTATTGA+AGG | - | chr5_3:50885928-50885947 | Msa0816510:intron | 5.0% |
| !! | AAAAATAAAATATTATTGAA+GGG | - | chr5_3:50885929-50885948 | Msa0816510:intron | 5.0% |
| !!! | TTTATATTTTAATACTTAAT+TGG | - | chr5_3:50886114-50886133 | Msa0816510:intron | 5.0% |
| TCATCTTCGGGCTGAACCTT+GGG | + | chr5_3:50884867-50884886 | None:intergenic | 50.0% | |
| TTCATCTTCGGGCTGAACCT+TGG | + | chr5_3:50884868-50884887 | None:intergenic | 50.0% | |
| ! | CTAGGAGGGTACGTTCTAGT+GGG | - | chr5_3:50884901-50884920 | Msa0816510:intron | 50.0% |
| GGGTACGTTCTAGTGGGATA+AGG | - | chr5_3:50884907-50884926 | Msa0816510:intron | 50.0% | |
| ACCCTCATGGACCCATCAAA+GGG | + | chr5_3:50885038-50885057 | None:intergenic | 50.0% | |
| AAGCCTCATCTTCACCCTCA+TGG | + | chr5_3:50885051-50885070 | None:intergenic | 50.0% | |
| !! | GAGTAATGATGGGTCTGAGG+TGG | - | chr5_3:50885103-50885122 | Msa0816510:intron | 50.0% |
| !! | TAATGATGGGTCTGAGGTGG+CGG | - | chr5_3:50885106-50885125 | Msa0816510:intron | 50.0% |
| TACATACCCCACGAGGCTTT+CGG | + | chr5_3:50885205-50885224 | None:intergenic | 50.0% | |
| ACGTACCCTCCTAGGTAACG+AGG | + | chr5_3:50884895-50884914 | None:intergenic | 55.0% | |
| CCACTAGAACGTACCCTCCT+AGG | + | chr5_3:50884903-50884922 | None:intergenic | 55.0% | |
| ! | CCTAGGAGGGTACGTTCTAG+TGG | - | chr5_3:50884900-50884919 | Msa0816510:intron | 55.0% |
| ! | GCCCTTTGATGGGTCCATGA+GGG | - | chr5_3:50885034-50885053 | Msa0816510:intron | 55.0% |
| CACCCTCATGGACCCATCAA+AGG | + | chr5_3:50885039-50885058 | None:intergenic | 55.0% | |
| GGTCCATGAGGGTGAAGATG+AGG | - | chr5_3:50885045-50885064 | Msa0816510:intron | 55.0% | |
| GAGGCTTCCTAAAGCCCAGT+TGG | - | chr5_3:50885064-50885083 | Msa0816510:intron | 55.0% | |
| ! | TATGGGTAGCGGTGGTGATG+CGG | - | chr5_3:50885148-50885167 | Msa0816510:intron | 55.0% |
| GGCTAAACCGAAAGCCTCGT+GGG | - | chr5_3:50885195-50885214 | Msa0816510:intron | 55.0% | |
| GCTAAACCGAAAGCCTCGTG+GGG | - | chr5_3:50885196-50885215 | Msa0816510:intron | 55.0% | |
| ! | GGCCCTTTGATGGGTCCATG+AGG | - | chr5_3:50885033-50885052 | Msa0816510:intron | 60.0% |
| CGGCTAAACCGAAAGCCTCG+TGG | - | chr5_3:50885194-50885213 | Msa0816510:intron | 60.0% | |
| GGTGATGCGGCGGAGCATGA+CGG | - | chr5_3:50885161-50885180 | Msa0816510:intron | 65.0% | |
| ! | GGGTAGCGGTGGTGATGCGG+CGG | - | chr5_3:50885151-50885170 | Msa0816510:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 50884451 | 50887329 | 50884451 | ID=Msa0816510;Name=Msa0816510 |
| chr5_3 | mRNA | 50884451 | 50887329 | 50884451 | ID=Msa0816510-mRNA-1;Parent=Msa0816510;Name=Msa0816510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|2|221|212 |
| chr5_3 | exon | 50884451 | 50884734 | 50884451 | ID=Msa0816510-mRNA-1:exon:15266;Parent=Msa0816510-mRNA-1 |
| chr5_3 | exon | 50886563 | 50887329 | 50886563 | ID=Msa0816510-mRNA-1:exon:15265;Parent=Msa0816510-mRNA-1 |
| chr5_3 | five_prime_UTR | 50887139 | 50887329 | 50887139 | ID=Msa0816510-mRNA-1:five_prime_utr;Parent=Msa0816510-mRNA-1 |
| chr5_3 | CDS | 50886563 | 50887138 | 50886563 | ID=Msa0816510-mRNA-1:cds;Parent=Msa0816510-mRNA-1 |
| chr5_3 | CDS | 50884672 | 50884734 | 50884672 | ID=Msa0816510-mRNA-1:cds;Parent=Msa0816510-mRNA-1 |
| chr5_3 | three_prime_UTR | 50884451 | 50884671 | 50884451 | ID=Msa0816510-mRNA-1:three_prime_utr;Parent=Msa0816510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
