Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816540 | XP_003616384.1 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 1.43e-141 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816540 | sp|Q6NLC8|Y1648_ARATH | 56.250 | 176 | 70 | 4 | 1 | 170 | 1 | 175 | 7.78e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816540 | G7KBN9 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 6.81e-142 | 404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0065680 | Msa0816540 | -0.828424 | 9.059375e-55 | -8.615850e-47 |
| Msa0615220 | Msa0816540 | 0.801579 | 8.423296e-49 | -8.615850e-47 |
| Msa0620620 | Msa0816540 | 0.813117 | 3.011026e-51 | -8.615850e-47 |
| Msa0711150 | Msa0816540 | 0.807392 | 5.170009e-50 | -8.615850e-47 |
| Msa0737350 | Msa0816540 | 0.855360 | 6.646777e-62 | -8.615850e-47 |
| Msa0738030 | Msa0816540 | 0.815775 | 7.777045e-52 | -8.615850e-47 |
| Msa0779090 | Msa0816540 | 0.861355 | 1.087523e-63 | -8.615850e-47 |
| Msa0816510 | Msa0816540 | 0.992339 | 1.067518e-192 | -8.615850e-47 |
| Msa0816540 | Msa0830230 | 0.803126 | 4.045395e-49 | -8.615850e-47 |
| Msa0816540 | Msa0856710 | 0.925309 | 2.184245e-90 | -8.615850e-47 |
| Msa0816540 | Msa1002850 | 0.811156 | 8.061233e-51 | -8.615850e-47 |
| Msa0816540 | Msa1204530 | 0.803294 | 3.733415e-49 | -8.615850e-47 |
| Msa0816540 | Msa1204630 | 0.807231 | 5.591193e-50 | -8.615850e-47 |
| Msa0816540 | Msa1335710 | 0.801527 | 8.632764e-49 | -8.615850e-47 |
| Msa0816540 | Msa1376130 | 0.829264 | 5.672752e-55 | -8.615850e-47 |
| Msa0816540 | Msa1377570 | 0.828109 | 1.078983e-54 | -8.615850e-47 |
| Msa0154840 | Msa0816540 | -0.808215 | 3.455522e-50 | -8.615850e-47 |
| Msa0187250 | Msa0816540 | 0.809033 | 2.310832e-50 | -8.615850e-47 |
| Msa0197660 | Msa0816540 | 0.806258 | 8.977376e-50 | -8.615850e-47 |
| Msa0378380 | Msa0816540 | 0.821874 | 3.200519e-53 | -8.615850e-47 |
| Msa0472960 | Msa0816540 | -0.807241 | 5.563778e-50 | -8.615850e-47 |
| Msa0239800 | Msa0816540 | 0.808813 | 2.575885e-50 | -8.615850e-47 |
| Msa0241140 | Msa0816540 | 0.816568 | 5.172386e-52 | -8.615850e-47 |
| Msa0292170 | Msa0816540 | 0.802286 | 6.029379e-49 | -8.615850e-47 |
| Msa0311720 | Msa0816540 | 0.800335 | 1.512871e-48 | -8.615850e-47 |
| Msa0317510 | Msa0816540 | 0.801117 | 1.047640e-48 | -8.615850e-47 |
| Msa0518560 | Msa0816540 | 0.809773 | 1.603488e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816540 | MtrunA17_Chr5g0435091 | 95.283 | 212 | 9 | 1 | 1 | 212 | 1 | 211 | 1.31e-145 | 404 |
| Msa0816540 | MtrunA17_Chr3g0111521 | 61.712 | 222 | 67 | 6 | 1 | 210 | 1 | 216 | 1.69e-79 | 236 |
| Msa0816540 | MtrunA17_Chr1g0160291 | 52.841 | 176 | 74 | 3 | 1 | 175 | 1 | 168 | 1.73e-56 | 178 |
| Msa0816540 | MtrunA17_Chr4g0044361 | 51.412 | 177 | 73 | 4 | 1 | 173 | 1 | 168 | 4.08e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816540 | AT1G66480.1 | 56.250 | 176 | 70 | 4 | 1 | 170 | 1 | 175 | 7.91e-60 | 187 |
| Msa0816540 | AT5G37840.1 | 51.196 | 209 | 85 | 5 | 1 | 198 | 1 | 203 | 2.38e-58 | 183 |
| Msa0816540 | AT2G01340.1 | 52.907 | 172 | 69 | 5 | 1 | 171 | 1 | 161 | 1.10e-53 | 171 |
| Msa0816540 | AT1G71015.1 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 3.68e-40 | 136 |
| Msa0816540 | AT1G71015.2 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 3.68e-40 | 136 |
Find 76 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATTGGTTTCTCTATT+AGG | 0.126642 | 5_3:+50976050 | None:intergenic |
| ACAACTTCGTTTGATGTTAT+TGG | 0.130160 | 5_3:+50975956 | None:intergenic |
| CCTCAATAGTATTTCCTCTT+AGG | 0.200768 | 5_3:-50973573 | Msa0816540:exon |
| GGTTGTATTTATATATATAT+TGG | 0.209013 | 5_3:+50976157 | None:intergenic |
| GAAGATTATGAGTTTGTATA+TGG | 0.218361 | 5_3:-50975543 | Msa0816540:CDS |
| ATATATGTAGTGCTTGATTT+TGG | 0.239755 | 5_3:-50973373 | Msa0816540:three_prime_UTR |
| CCTATGGTGTTTCCCATGAT+TGG | 0.278242 | 5_3:+50976037 | None:intergenic |
| GTTGTATTTATATATATATT+GGG | 0.310646 | 5_3:+50976158 | None:intergenic |
| GAGTTCTTGATTTGGCTCTA+AGG | 0.329180 | 5_3:+50975865 | None:intergenic |
| CATCAAATTTGAGCTTTGAT+AGG | 0.333943 | 5_3:-50975661 | Msa0816540:CDS |
| CAGTAAAACACTTCGGGCTT+AGG | 0.337959 | 5_3:-50975895 | Msa0816540:CDS |
| TCTTGTCTTGTGTTTCTTTG+TGG | 0.357395 | 5_3:+50976080 | None:intergenic |
| GCTAAGATTATGAAGATAGA+TGG | 0.365523 | 5_3:-50976001 | Msa0816540:CDS |
| CTCAAGCAGTAAAACACTTC+GGG | 0.366167 | 5_3:-50975901 | Msa0816540:CDS |
| AGCTTTGATAGGCCCTTTGA+TGG | 0.367331 | 5_3:-50975650 | Msa0816540:CDS |
| TTGGGCTTGAGTTCTTGATT+TGG | 0.367392 | 5_3:+50975857 | None:intergenic |
| TATATATATTGGGATTGTTA+TGG | 0.371220 | 5_3:+50976168 | None:intergenic |
| TACATACCCCACGAGGCTTT+CGG | 0.379415 | 5_3:+50975471 | None:intergenic |
| TTCATCTTCGGGCTGAACCT+TGG | 0.389122 | 5_3:+50975808 | None:intergenic |
| TCATCTTCGGGCTGAACCTT+GGG | 0.401043 | 5_3:+50975809 | None:intergenic |
| AGTTCTTGATTTGGCTCTAA+GGG | 0.425177 | 5_3:+50975866 | None:intergenic |
| GACTTTCTTCAATCTCCATT+GGG | 0.425939 | 5_3:+50973610 | None:intergenic |
| GGACTTTCTTCAATCTCCAT+TGG | 0.427544 | 5_3:+50973609 | None:intergenic |
| AGCCCAGTTGGAAAAGTTGA+TGG | 0.431835 | 5_3:-50975597 | Msa0816540:CDS |
| CTACATATATGATCTTCTAT+AGG | 0.447183 | 5_3:+50973386 | None:intergenic |
| AGTAAAACACTTCGGGCTTA+GGG | 0.449480 | 5_3:-50975894 | Msa0816540:CDS |
| TATTGAGGAGCTGCTTCAAC+AGG | 0.453324 | 5_3:+50973588 | None:intergenic |
| TTGATGGAAGAGAGTAATGA+TGG | 0.466806 | 5_3:-50975581 | Msa0816540:CDS |
| TGGTTGATTGGGTGAAAGTG+TGG | 0.471214 | 5_3:+50976120 | None:intergenic |
| CACTAACGAAATATCTGAAA+CGG | 0.473609 | 5_3:+50975694 | None:intergenic |
| GAATCAAGTAAAACATGGTT+GGG | 0.474525 | 5_3:+50975923 | None:intergenic |
| CCTAATAGAGAAACCAATCA+TGG | 0.475579 | 5_3:-50976050 | Msa0816540:exon |
| CCACTAGAACGTACCCTCCT+AGG | 0.477484 | 5_3:+50975773 | None:intergenic |
| AGAATCAAGTAAAACATGGT+TGG | 0.486013 | 5_3:+50975922 | None:intergenic |
| AGTAACAAGAAACAAGTTAG+AGG | 0.492403 | 5_3:+50976192 | None:intergenic |
| GAACCTTGGGTAAATCTACT+AGG | 0.494957 | 5_3:+50975822 | None:intergenic |
| TAATGATGGGTCTGAGGTGG+CGG | 0.497077 | 5_3:-50975567 | Msa0816540:CDS |
| CACCCTCATGGACCCATCAA+AGG | 0.503885 | 5_3:+50975637 | None:intergenic |
| GATAAGGAACGTGGATGCTA+AGG | 0.505115 | 5_3:-50975750 | Msa0816540:CDS |
| GGGTACGTTCTAGTGGGATA+AGG | 0.513180 | 5_3:-50975766 | Msa0816540:CDS |
| AAGATTATGAGTTTGTATAT+GGG | 0.514266 | 5_3:-50975542 | Msa0816540:CDS |
| AAGCCTCATCTTCACCCTCA+TGG | 0.515255 | 5_3:+50975625 | None:intergenic |
| ATGAGTTTGTATATGGGTAG+CGG | 0.520469 | 5_3:-50975536 | Msa0816540:CDS |
| ACCCTCATGGACCCATCAAA+GGG | 0.521258 | 5_3:+50975638 | None:intergenic |
| TCAAAGCTCAAATTTGATGA+TGG | 0.527565 | 5_3:+50975665 | None:intergenic |
| CCTAGGAGGGTACGTTCTAG+TGG | 0.533099 | 5_3:-50975773 | Msa0816540:CDS |
| GGTTGATTGGGTGAAAGTGT+GGG | 0.533520 | 5_3:+50976121 | None:intergenic |
| AAGCTCAAATTTGATGATGG+TGG | 0.537750 | 5_3:+50975668 | None:intergenic |
| ACAAGAAACAAGTTAGAGGT+TGG | 0.541035 | 5_3:+50976196 | None:intergenic |
| GGCTAAACCGAAAGCCTCGT+GGG | 0.541410 | 5_3:-50975478 | Msa0816540:CDS |
| GCTTTGATAGGCCCTTTGAT+GGG | 0.547818 | 5_3:-50975649 | Msa0816540:CDS |
| CCTAAGAGGAAATACTATTG+AGG | 0.556467 | 5_3:+50973573 | None:intergenic |
| GAGGCTTCCTAAAGCCCAGT+TGG | 0.560896 | 5_3:-50975609 | Msa0816540:CDS |
| TCTCAAGCAGTAAAACACTT+CGG | 0.563644 | 5_3:-50975902 | Msa0816540:CDS |
| CCAATCATGGGAAACACCAT+AGG | 0.564589 | 5_3:-50976037 | Msa0816540:exon |
| GGCCCTTTGATGGGTCCATG+AGG | 0.590646 | 5_3:-50975640 | Msa0816540:CDS |
| GGTCCATGAGGGTGAAGATG+AGG | 0.594224 | 5_3:-50975628 | Msa0816540:CDS |
| CTTGAGAATCAAGTAAAACA+TGG | 0.599048 | 5_3:+50975918 | None:intergenic |
| CTTCCTAGTAGATTTACCCA+AGG | 0.604663 | 5_3:-50975825 | Msa0816540:CDS |
| CTAATAGAGAAACCAATCAT+GGG | 0.606619 | 5_3:-50976049 | Msa0816540:exon |
| GGGTAGCGGTGGTGATGCGG+CGG | 0.614054 | 5_3:-50975522 | Msa0816540:CDS |
| ATAAGGAACGTGGATGCTAA+GGG | 0.617148 | 5_3:-50975749 | Msa0816540:CDS |
| GCCCTTTGATGGGTCCATGA+GGG | 0.621686 | 5_3:-50975639 | Msa0816540:CDS |
| CGGCTAAACCGAAAGCCTCG+TGG | 0.624658 | 5_3:-50975479 | Msa0816540:CDS |
| CTAGGAGGGTACGTTCTAGT+GGG | 0.625082 | 5_3:-50975772 | Msa0816540:CDS |
| GGTGATGCGGCGGAGCATGA+CGG | 0.634118 | 5_3:-50975512 | Msa0816540:CDS |
| TATGGGTAGCGGTGGTGATG+CGG | 0.636003 | 5_3:-50975525 | Msa0816540:CDS |
| GAGTAATGATGGGTCTGAGG+TGG | 0.637797 | 5_3:-50975570 | Msa0816540:CDS |
| AGAGAGTAATGATGGGTCTG+AGG | 0.645019 | 5_3:-50975573 | Msa0816540:CDS |
| TGATGGAAGAGAGTAATGAT+GGG | 0.646933 | 5_3:-50975580 | Msa0816540:CDS |
| TTCTAGTGGGATAAGGAACG+TGG | 0.684266 | 5_3:-50975759 | Msa0816540:CDS |
| GCTAAACCGAAAGCCTCGTG+GGG | 0.689080 | 5_3:-50975477 | Msa0816540:intron |
| TGTACATTCTAACCATCATG+CGG | 0.714217 | 5_3:+50973536 | None:intergenic |
| AGTTTGTATATGGGTAGCGG+TGG | 0.722789 | 5_3:-50975533 | Msa0816540:CDS |
| ACGTACCCTCCTAGGTAACG+AGG | 0.744483 | 5_3:+50975781 | None:intergenic |
| ATACTTATACATACCCCACG+AGG | 0.764323 | 5_3:+50975464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGTATTTATATATATATT+GGG | + | chr5_3:50973433-50973452 | None:intergenic | 10.0% |
| !!! | TTTTGTAATAATTTCTTTTA+TGG | - | chr5_3:50974576-50974595 | Msa0816540:intron | 10.0% |
| !! | GGTTGTATTTATATATATAT+TGG | + | chr5_3:50973434-50973453 | None:intergenic | 15.0% |
| !!! | TTTTGTTGTTATTATTATCT+TGG | - | chr5_3:50974165-50974184 | Msa0816540:intron | 15.0% |
| !! | AATACAAGGAAAAAAAAATA+AGG | + | chr5_3:50974433-50974452 | None:intergenic | 15.0% |
| !!! | AACTCAATTACTTTTTTTTA+GGG | - | chr5_3:50974952-50974971 | Msa0816540:intron | 15.0% |
| !!! | ATTTTACTTGCTTAAAAATT+AGG | + | chr5_3:50975363-50975382 | None:intergenic | 15.0% |
| !! | TATATATATTGGGATTGTTA+TGG | + | chr5_3:50973423-50973442 | None:intergenic | 20.0% |
| !! | AAGATTATGAGTTTGTATAT+GGG | - | chr5_3:50974046-50974065 | Msa0816540:intron | 20.0% |
| !! | AAAATAACATTCTTTCAAAG+TGG | - | chr5_3:50974265-50974284 | Msa0816540:intron | 20.0% |
| !!! | CCGATTTTTTAATTACTTAA+GGG | + | chr5_3:50974485-50974504 | None:intergenic | 20.0% |
| !! | CCCTTAAGTAATTAAAAAAT+CGG | - | chr5_3:50974482-50974501 | Msa0816540:intron | 20.0% |
| !!! | ATTTCTTTTATGGTTTTTCT+AGG | - | chr5_3:50974586-50974605 | Msa0816540:intron | 20.0% |
| !! | TAAATCAAATGAAGGAAAAT+CGG | + | chr5_3:50974634-50974653 | None:intergenic | 20.0% |
| !! | AAGAAGAATAAATCAAATGA+AGG | + | chr5_3:50974642-50974661 | None:intergenic | 20.0% |
| !!! | GAACTCAATTACTTTTTTTT+AGG | - | chr5_3:50974951-50974970 | Msa0816540:intron | 20.0% |
| !!! | AAGACTTTGGATTTTAATAA+AGG | - | chr5_3:50975113-50975132 | Msa0816540:intron | 20.0% |
| !! | ACTACTCACTATATATTTAA+GGG | + | chr5_3:50975167-50975186 | None:intergenic | 20.0% |
| !! | AACTACTCACTATATATTTA+AGG | + | chr5_3:50975168-50975187 | None:intergenic | 20.0% |
| !!! | CATATATTGATTGCATTTTA+AGG | + | chr5_3:50975287-50975306 | None:intergenic | 20.0% |
| !!! | AAACTTATTAAAGGAGATTT+TGG | - | chr5_3:50975580-50975599 | Msa0816540:CDS | 20.0% |
| !!! | AATAACATGTAGATTTTGTT+TGG | - | chr5_3:50975670-50975689 | Msa0816540:CDS | 20.0% |
| !!! | ATTAGATAGTTTCCTATTTT+AGG | - | chr5_3:50975873-50975892 | Msa0816540:CDS | 20.0% |
| !! | AATAACTTAGTACCTAAAAT+AGG | + | chr5_3:50975888-50975907 | None:intergenic | 20.0% |
| !!! | AATTCATTAACACAATTTTG+TGG | + | chr5_3:50975914-50975933 | None:intergenic | 20.0% |
| !! | TACTAAAAAAAAAACCTAAG+AGG | + | chr5_3:50976032-50976051 | None:intergenic | 20.0% |
| !! | ATTTTTGTGTTTGGTTGATT+GGG | + | chr5_3:50973482-50973501 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTTTGGTTGAT+TGG | + | chr5_3:50973483-50973502 | None:intergenic | 25.0% |
| !!! | TGGTTTTGTATTTTTGTGTT+TGG | + | chr5_3:50973491-50973510 | None:intergenic | 25.0% |
| !! | TATTGGAGTTTTTACTTTGA+AGG | + | chr5_3:50973618-50973637 | None:intergenic | 25.0% |
| !! | ACTAGGAAGTAAATTTTCTT+GGG | + | chr5_3:50973752-50973771 | None:intergenic | 25.0% |
| !! | TACTAGGAAGTAAATTTTCT+TGG | + | chr5_3:50973753-50973772 | None:intergenic | 25.0% |
| ! | GAAGATTATGAGTTTGTATA+TGG | - | chr5_3:50974045-50974064 | Msa0816540:intron | 25.0% |
| !!! | GCCGATTTTTTAATTACTTA+AGG | + | chr5_3:50974486-50974505 | None:intergenic | 25.0% |
| ! | AAATCAAATGAAGGAAAATC+GGG | + | chr5_3:50974633-50974652 | None:intergenic | 25.0% |
| ! | AGCACATATAGTAGAAAAAT+TGG | + | chr5_3:50974723-50974742 | None:intergenic | 25.0% |
| ! | ATGATAAAACTAGACATGAT+AGG | + | chr5_3:50974781-50974800 | None:intergenic | 25.0% |
| ! | TTCATGTTAGAATTCGAATT+TGG | - | chr5_3:50974887-50974906 | Msa0816540:intron | 25.0% |
| ! | TTTAATGTATAGTTTCTTCG+TGG | - | chr5_3:50975330-50975349 | Msa0816540:intron | 25.0% |
| ! | TACTTCAAATAATGTCAAAC+AGG | - | chr5_3:50975392-50975411 | Msa0816540:intron | 25.0% |
| ! | GGCACAATAAAACTTATTAA+AGG | - | chr5_3:50975571-50975590 | Msa0816540:CDS | 25.0% |
| ! | CTACATATATGATCTTCTAT+AGG | + | chr5_3:50976205-50976224 | None:intergenic | 25.0% |
| !! | ATATATGTAGTGCTTGATTT+TGG | - | chr5_3:50976215-50976234 | Msa0816540:five_prime_UTR | 25.0% |
| AGTAACAAGAAACAAGTTAG+AGG | + | chr5_3:50973399-50973418 | None:intergenic | 30.0% | |
| CTAATAGAGAAACCAATCAT+GGG | - | chr5_3:50973539-50973558 | Msa0816540:three_prime_UTR | 30.0% | |
| !!! | AGCTTTTTTGCTTTTTCCTA+TGG | + | chr5_3:50973570-50973589 | None:intergenic | 30.0% |
| GCTAAGATTATGAAGATAGA+TGG | - | chr5_3:50973587-50973606 | Msa0816540:CDS | 30.0% | |
| ACAACTTCGTTTGATGTTAT+TGG | + | chr5_3:50973635-50973654 | None:intergenic | 30.0% | |
| GAATCAAGTAAAACATGGTT+GGG | + | chr5_3:50973668-50973687 | None:intergenic | 30.0% | |
| AGAATCAAGTAAAACATGGT+TGG | + | chr5_3:50973669-50973688 | None:intergenic | 30.0% | |
| CTTGAGAATCAAGTAAAACA+TGG | + | chr5_3:50973673-50973692 | None:intergenic | 30.0% | |
| !!! | TAACGAGGTTTTTTCATCTT+CGG | + | chr5_3:50973795-50973814 | None:intergenic | 30.0% |
| CACTAACGAAATATCTGAAA+CGG | + | chr5_3:50973897-50973916 | None:intergenic | 30.0% | |
| TCAAAGCTCAAATTTGATGA+TGG | + | chr5_3:50973926-50973945 | None:intergenic | 30.0% | |
| ! | CATCAAATTTGAGCTTTGAT+AGG | - | chr5_3:50973927-50973946 | Msa0816540:intron | 30.0% |
| !!! | TTTTTTTCCTTGTATTCTCG+TGG | - | chr5_3:50974437-50974456 | Msa0816540:intron | 30.0% |
| ! | GAAAACAAGCTTATGTGTTT+TGG | + | chr5_3:50974698-50974717 | None:intergenic | 30.0% |
| ATAGAAGCTTAACAAGACTT+TGG | - | chr5_3:50975100-50975119 | Msa0816540:intron | 30.0% | |
| GCAATCAATATATGAAGTAG+AGG | - | chr5_3:50975293-50975312 | Msa0816540:intron | 30.0% | |
| ! | CTATGTGAAAAGGATTTTGA+AGG | - | chr5_3:50975415-50975434 | Msa0816540:intron | 30.0% |
| TTCAAATACCCAATTTAGCA+AGG | - | chr5_3:50975607-50975626 | Msa0816540:CDS | 30.0% | |
| TCAAATACCCAATTTAGCAA+GGG | - | chr5_3:50975608-50975627 | Msa0816540:CDS | 30.0% | |
| !! | TCTACATGTTATTTCTTCTC+TGG | + | chr5_3:50975663-50975682 | None:intergenic | 30.0% |
| GTAACTTCTGCAAAAAATCA+CGG | - | chr5_3:50975758-50975777 | Msa0816540:CDS | 30.0% | |
| TAGTGTTTGTGTAAGAATCA+CGG | + | chr5_3:50975791-50975810 | None:intergenic | 30.0% | |
| AAACAATTTAAGTGCGTGTT+TGG | + | chr5_3:50975819-50975838 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAGTACCGCATGA+TGG | - | chr5_3:50976040-50976059 | Msa0816540:exon | 30.0% |
| ACAAGAAACAAGTTAGAGGT+TGG | + | chr5_3:50973395-50973414 | None:intergenic | 35.0% | |
| TCTTGTCTTGTGTTTCTTTG+TGG | + | chr5_3:50973511-50973530 | None:intergenic | 35.0% | |
| !! | CCATGATTGGTTTCTCTATT+AGG | + | chr5_3:50973541-50973560 | None:intergenic | 35.0% |
| CCTAATAGAGAAACCAATCA+TGG | - | chr5_3:50973538-50973557 | Msa0816540:three_prime_UTR | 35.0% | |
| TCTCAAGCAGTAAAACACTT+CGG | - | chr5_3:50973686-50973705 | Msa0816540:intron | 35.0% | |
| !! | AGTTCTTGATTTGGCTCTAA+GGG | + | chr5_3:50973725-50973744 | None:intergenic | 35.0% |
| !!! | AACGAGGTTTTTTCATCTTC+GGG | + | chr5_3:50973794-50973813 | None:intergenic | 35.0% |
| ATGAAAAAACCTCGTTACCT+AGG | - | chr5_3:50973798-50973817 | Msa0816540:intron | 35.0% | |
| !! | AAGCTCAAATTTGATGATGG+TGG | + | chr5_3:50973923-50973942 | None:intergenic | 35.0% |
| ! | TTCCATCAACTTTTCCAACT+GGG | + | chr5_3:50973996-50974015 | None:intergenic | 35.0% |
| TTGATGGAAGAGAGTAATGA+TGG | - | chr5_3:50974007-50974026 | Msa0816540:intron | 35.0% | |
| TGATGGAAGAGAGTAATGAT+GGG | - | chr5_3:50974008-50974027 | Msa0816540:intron | 35.0% | |
| ATGAGTTTGTATATGGGTAG+CGG | - | chr5_3:50974052-50974071 | Msa0816540:intron | 35.0% | |
| TTGAAATCCGCAACAAGAAA+AGG | + | chr5_3:50974367-50974386 | None:intergenic | 35.0% | |
| TGTTTAGCGTAGCATAGATA+AGG | + | chr5_3:50974820-50974839 | None:intergenic | 35.0% | |
| GGGATTTGAACTCAATTACT+TGG | - | chr5_3:50974972-50974991 | Msa0816540:intron | 35.0% | |
| AATACTCGTCGTTTACTTGT+TGG | - | chr5_3:50975545-50975564 | Msa0816540:CDS | 35.0% | |
| CAAATACCCAATTTAGCAAG+GGG | - | chr5_3:50975609-50975628 | Msa0816540:CDS | 35.0% | |
| ! | ATTTTGCCCCTTGCTAAATT+GGG | + | chr5_3:50975618-50975637 | None:intergenic | 35.0% |
| ! | TATTTTGCCCCTTGCTAAAT+TGG | + | chr5_3:50975619-50975638 | None:intergenic | 35.0% |
| TGTTTGGTATCACATTGAGT+AGG | - | chr5_3:50975686-50975705 | Msa0816540:CDS | 35.0% | |
| GACTTTCTTCAATCTCCATT+GGG | + | chr5_3:50975981-50976000 | None:intergenic | 35.0% | |
| CCTAAGAGGAAATACTATTG+AGG | + | chr5_3:50976018-50976037 | None:intergenic | 35.0% | |
| CCTCAATAGTATTTCCTCTT+AGG | - | chr5_3:50976015-50976034 | Msa0816540:CDS | 35.0% | |
| TGTACATTCTAACCATCATG+CGG | + | chr5_3:50976055-50976074 | None:intergenic | 35.0% | |
| !!! | GTAGTGCTTGATTTTGGTTA+CGG | - | chr5_3:50976221-50976240 | Msa0816540:five_prime_UTR | 35.0% |
| !! | AGTGTGGGTTATGAGTTTTG+TGG | + | chr5_3:50973455-50973474 | None:intergenic | 40.0% |
| CTCAAGCAGTAAAACACTTC+GGG | - | chr5_3:50973687-50973706 | Msa0816540:intron | 40.0% | |
| AGTAAAACACTTCGGGCTTA+GGG | - | chr5_3:50973694-50973713 | Msa0816540:intron | 40.0% | |
| !! | GAGTTCTTGATTTGGCTCTA+AGG | + | chr5_3:50973726-50973745 | None:intergenic | 40.0% |
| TTGGGCTTGAGTTCTTGATT+TGG | + | chr5_3:50973734-50973753 | None:intergenic | 40.0% | |
| CTTCCTAGTAGATTTACCCA+AGG | - | chr5_3:50973763-50973782 | Msa0816540:intron | 40.0% | |
| GAACCTTGGGTAAATCTACT+AGG | + | chr5_3:50973769-50973788 | None:intergenic | 40.0% | |
| AAAAAACCTCGTTACCTAGG+AGG | - | chr5_3:50973801-50973820 | Msa0816540:intron | 40.0% | |
| AAAAACCTCGTTACCTAGGA+GGG | - | chr5_3:50973802-50973821 | Msa0816540:intron | 40.0% | |
| ATAAGGAACGTGGATGCTAA+GGG | - | chr5_3:50973839-50973858 | Msa0816540:intron | 40.0% | |
| ! | AACTTTTCCAACTGGGCTTT+AGG | + | chr5_3:50973989-50974008 | None:intergenic | 40.0% |
| ! | CTTCCATCAACTTTTCCAAC+TGG | + | chr5_3:50973997-50974016 | None:intergenic | 40.0% |
| ATACTTATACATACCCCACG+AGG | + | chr5_3:50974127-50974146 | None:intergenic | 40.0% | |
| TTCGTTGTGGCGTTTCATAA+TGG | - | chr5_3:50974296-50974315 | Msa0816540:intron | 40.0% | |
| AATCGGGTCAAAAGAGAAAG+AGG | + | chr5_3:50974617-50974636 | None:intergenic | 40.0% | |
| CATAGATAAGGATGTTGCGT+TGG | + | chr5_3:50974808-50974827 | None:intergenic | 40.0% | |
| GTCAAACAGGCTATGTGAAA+AGG | - | chr5_3:50975405-50975424 | Msa0816540:intron | 40.0% | |
| ! | TTGTTCTCTAGCGGTTTGTT+AGG | + | chr5_3:50975449-50975468 | None:intergenic | 40.0% |
| AACTGCAAGTTGTTCTCTAG+CGG | + | chr5_3:50975458-50975477 | None:intergenic | 40.0% | |
| GGACTTTCTTCAATCTCCAT+TGG | + | chr5_3:50975982-50976001 | None:intergenic | 40.0% | |
| ! | GGTTGATTGGGTGAAAGTGT+GGG | + | chr5_3:50973470-50973489 | None:intergenic | 45.0% |
| TGGTTGATTGGGTGAAAGTG+TGG | + | chr5_3:50973471-50973490 | None:intergenic | 45.0% | |
| CCTATGGTGTTTCCCATGAT+TGG | + | chr5_3:50973554-50973573 | None:intergenic | 45.0% | |
| CCAATCATGGGAAACACCAT+AGG | - | chr5_3:50973551-50973570 | Msa0816540:three_prime_UTR | 45.0% | |
| CAGTAAAACACTTCGGGCTT+AGG | - | chr5_3:50973693-50973712 | Msa0816540:intron | 45.0% | |
| TTCTAGTGGGATAAGGAACG+TGG | - | chr5_3:50973829-50973848 | Msa0816540:intron | 45.0% | |
| GATAAGGAACGTGGATGCTA+AGG | - | chr5_3:50973838-50973857 | Msa0816540:intron | 45.0% | |
| ! | AGCTTTGATAGGCCCTTTGA+TGG | - | chr5_3:50973938-50973957 | Msa0816540:intron | 45.0% |
| GCTTTGATAGGCCCTTTGAT+GGG | - | chr5_3:50973939-50973958 | Msa0816540:intron | 45.0% | |
| AGCCCAGTTGGAAAAGTTGA+TGG | - | chr5_3:50973991-50974010 | Msa0816540:intron | 45.0% | |
| !! | AGAGAGTAATGATGGGTCTG+AGG | - | chr5_3:50974015-50974034 | Msa0816540:intron | 45.0% |
| ! | AGTTTGTATATGGGTAGCGG+TGG | - | chr5_3:50974055-50974074 | Msa0816540:intron | 45.0% |
| ! | AGCATGACGGTGATGTTTTG+CGG | - | chr5_3:50974089-50974108 | Msa0816540:intron | 45.0% |
| AGTGGCTTGAAGTTTCGTTG+TGG | - | chr5_3:50974283-50974302 | Msa0816540:intron | 45.0% | |
| GACTTGCGTGAAATTGCATG+TGG | - | chr5_3:50974326-50974345 | Msa0816540:intron | 45.0% | |
| TTGCATGTGGTTGCAAAGAC+AGG | - | chr5_3:50974339-50974358 | Msa0816540:intron | 45.0% | |
| TGCATGTGGTTGCAAAGACA+GGG | - | chr5_3:50974340-50974359 | Msa0816540:intron | 45.0% | |
| ! | ACAGGGTCCTTTTCTTGTTG+CGG | - | chr5_3:50974357-50974376 | Msa0816540:intron | 45.0% |
| CCAAATGCCACGAGAATACA+AGG | + | chr5_3:50974447-50974466 | None:intergenic | 45.0% | |
| CCTTGTATTCTCGTGGCATT+TGG | - | chr5_3:50974444-50974463 | Msa0816540:intron | 45.0% | |
| ATTCTCGTGGCATTTGGCAA+AGG | - | chr5_3:50974450-50974469 | Msa0816540:intron | 45.0% | |
| ! | TCGTCGTTTACTTGTTGGTC+TGG | - | chr5_3:50975550-50975569 | Msa0816540:CDS | 45.0% |
| !! | ACGAGTGAGTTTTAGCCCAA+TGG | - | chr5_3:50975963-50975982 | Msa0816540:CDS | 45.0% |
| TATTGAGGAGCTGCTTCAAC+AGG | + | chr5_3:50976003-50976022 | None:intergenic | 45.0% | |
| !!! | ATAAAAAATAAATAAACTTT+TGG | - | chr5_3:50974404-50974423 | Msa0816540:intron | 5.0% |
| !! | AATTATTACAAAATATTTAA+AGG | + | chr5_3:50974569-50974588 | None:intergenic | 5.0% |
| !! | TAAAAATAAAATATTATTGA+AGG | - | chr5_3:50974843-50974862 | Msa0816540:intron | 5.0% |
| !! | AAAAATAAAATATTATTGAA+GGG | - | chr5_3:50974844-50974863 | Msa0816540:intron | 5.0% |
| !!! | TTTATATTTTAATACTTAAT+TGG | - | chr5_3:50975029-50975048 | Msa0816540:intron | 5.0% |
| TCATCTTCGGGCTGAACCTT+GGG | + | chr5_3:50973782-50973801 | None:intergenic | 50.0% | |
| TTCATCTTCGGGCTGAACCT+TGG | + | chr5_3:50973783-50973802 | None:intergenic | 50.0% | |
| ! | CTAGGAGGGTACGTTCTAGT+GGG | - | chr5_3:50973816-50973835 | Msa0816540:intron | 50.0% |
| GGGTACGTTCTAGTGGGATA+AGG | - | chr5_3:50973822-50973841 | Msa0816540:intron | 50.0% | |
| ACCCTCATGGACCCATCAAA+GGG | + | chr5_3:50973953-50973972 | None:intergenic | 50.0% | |
| AAGCCTCATCTTCACCCTCA+TGG | + | chr5_3:50973966-50973985 | None:intergenic | 50.0% | |
| !! | GAGTAATGATGGGTCTGAGG+TGG | - | chr5_3:50974018-50974037 | Msa0816540:intron | 50.0% |
| !! | TAATGATGGGTCTGAGGTGG+CGG | - | chr5_3:50974021-50974040 | Msa0816540:intron | 50.0% |
| TACATACCCCACGAGGCTTT+CGG | + | chr5_3:50974120-50974139 | None:intergenic | 50.0% | |
| ACGTACCCTCCTAGGTAACG+AGG | + | chr5_3:50973810-50973829 | None:intergenic | 55.0% | |
| CCACTAGAACGTACCCTCCT+AGG | + | chr5_3:50973818-50973837 | None:intergenic | 55.0% | |
| ! | CCTAGGAGGGTACGTTCTAG+TGG | - | chr5_3:50973815-50973834 | Msa0816540:intron | 55.0% |
| ! | GCCCTTTGATGGGTCCATGA+GGG | - | chr5_3:50973949-50973968 | Msa0816540:intron | 55.0% |
| CACCCTCATGGACCCATCAA+AGG | + | chr5_3:50973954-50973973 | None:intergenic | 55.0% | |
| GGTCCATGAGGGTGAAGATG+AGG | - | chr5_3:50973960-50973979 | Msa0816540:intron | 55.0% | |
| GAGGCTTCCTAAAGCCCAGT+TGG | - | chr5_3:50973979-50973998 | Msa0816540:intron | 55.0% | |
| ! | TATGGGTAGCGGTGGTGATG+CGG | - | chr5_3:50974063-50974082 | Msa0816540:intron | 55.0% |
| GGCTAAACCGAAAGCCTCGT+GGG | - | chr5_3:50974110-50974129 | Msa0816540:intron | 55.0% | |
| GCTAAACCGAAAGCCTCGTG+GGG | - | chr5_3:50974111-50974130 | Msa0816540:intron | 55.0% | |
| ! | GGCCCTTTGATGGGTCCATG+AGG | - | chr5_3:50973948-50973967 | Msa0816540:intron | 60.0% |
| CGGCTAAACCGAAAGCCTCG+TGG | - | chr5_3:50974109-50974128 | Msa0816540:intron | 60.0% | |
| GGTGATGCGGCGGAGCATGA+CGG | - | chr5_3:50974076-50974095 | Msa0816540:intron | 65.0% | |
| ! | GGGTAGCGGTGGTGATGCGG+CGG | - | chr5_3:50974066-50974085 | Msa0816540:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 50973366 | 50976244 | 50973366 | ID=Msa0816540;Name=Msa0816540 |
| chr5_3 | mRNA | 50973366 | 50976244 | 50973366 | ID=Msa0816540-mRNA-1;Parent=Msa0816540;Name=Msa0816540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|2|221|212 |
| chr5_3 | exon | 50973366 | 50973649 | 50973366 | ID=Msa0816540-mRNA-1:exon:15294;Parent=Msa0816540-mRNA-1 |
| chr5_3 | exon | 50975478 | 50976244 | 50975478 | ID=Msa0816540-mRNA-1:exon:15293;Parent=Msa0816540-mRNA-1 |
| chr5_3 | five_prime_UTR | 50976054 | 50976244 | 50976054 | ID=Msa0816540-mRNA-1:five_prime_utr;Parent=Msa0816540-mRNA-1 |
| chr5_3 | CDS | 50975478 | 50976053 | 50975478 | ID=Msa0816540-mRNA-1:cds;Parent=Msa0816540-mRNA-1 |
| chr5_3 | CDS | 50973587 | 50973649 | 50973587 | ID=Msa0816540-mRNA-1:cds;Parent=Msa0816540-mRNA-1 |
| chr5_3 | three_prime_UTR | 50973366 | 50973586 | 50973366 | ID=Msa0816540-mRNA-1:three_prime_utr;Parent=Msa0816540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
