AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826760 MtrunA17_Chr5g0448531 99.379 161 1 0 1 161 1 161 6.03e-118 330
Msa0826760 MtrunA17_Chr5g0440601 78.906 128 27 0 34 161 11 138 9.92e-75 219
Msa0826760 MtrunA17_Chr1g0156591 54.610 141 64 0 1 141 1 141 1.84e-53 166
Msa0826760 MtrunA17_Chr7g0263061 43.478 138 78 0 2 139 3 140 6.43e-40 131
Msa0826760 MtrunA17_Chr8g0389621 43.478 138 78 0 2 139 3 140 6.43e-40 131
Msa0826760 MtrunA17_Chr8g0373311 37.195 164 93 2 1 159 1 159 3.24e-32 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826760 AT2G17380.1 91.925 161 13 0 1 161 1 161 1.00e-111 314
Msa0826760 AT4G35410.2 90.683 161 15 0 1 161 1 161 2.35e-109 308
Msa0826760 AT4G35410.1 91.837 98 8 0 1 98 1 98 8.86e-66 196
Msa0826760 AT1G47830.1 53.191 141 66 0 1 141 1 141 1.87e-52 164
Msa0826760 AT2G19790.1 42.754 138 79 0 2 139 3 140 6.11e-39 129
Msa0826760 AT3G50860.1 37.342 158 88 2 1 153 1 152 7.80e-31 109
Msa0826760 AT3G50860.2 37.857 140 82 1 1 135 1 140 1.24e-30 108

Find 55 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGTCGGTCAGTTTCTTTC+TGG 0.155545 5_3:-67521487 None:intergenic
GATATAAAGTTGTTTATAAA+AGG 0.214674 5_3:+67523070 Msa0826760:CDS
TTATATGCGTTGCAATTCTA+TGG 0.222882 5_3:+67524282 Msa0826760:three_prime_UTR
GAGATTCTTGATCGGTATTT+TGG 0.252220 5_3:+67523274 Msa0826760:CDS
AATTTCATCAAGTATATAAT+AGG 0.297509 5_3:-67523832 None:intergenic
TCTAATTGCTGGCGAGCTTC+AGG 0.306112 5_3:+67523854 Msa0826760:CDS
CATTGTCTTTCAGGATTCAT+TGG 0.310542 5_3:+67523989 Msa0826760:intron
ATCGCACAAGCTACTAAATA+AGG 0.320939 5_3:+67524053 Msa0826760:CDS
CTTCTTTCCTTCTGAGTGTA+AGG 0.334840 5_3:-67522812 None:intergenic
CTTGATGAAATTCTAATTGC+TGG 0.336106 5_3:+67523843 Msa0826760:CDS
GATCTATTTGCTTGAGGATC+AGG 0.339130 5_3:+67524369 Msa0826760:three_prime_UTR
CAATTTACAGGTCTGTGAAT+TGG 0.339292 5_3:+67523404 Msa0826760:intron
TTGAGGAATGGAGAAATGTT+TGG 0.395006 5_3:+67524155 Msa0826760:three_prime_UTR
GTTAGAAGAAGATGAAGATC+TGG 0.396544 5_3:-67521507 None:intergenic
CTCTACAAAATTACAGAGCT+TGG 0.403422 5_3:-67523040 None:intergenic
GCTTTGAGATTGAATTTCAT+TGG 0.424235 5_3:+67524413 Msa0826760:three_prime_UTR
AGATTAAGATGAATATACTT+TGG 0.432197 5_3:+67521385 Msa0826760:five_prime_UTR
TTGTTGAATTGAAATTGAAA+TGG 0.434484 5_3:-67521564 None:intergenic
GGAAGGTTAGGCTCACAAAA+TGG 0.441892 5_3:+67522783 Msa0826760:CDS
ATATCCGCTGTTGTAATTGT+TGG 0.443732 5_3:+67524128 Msa0826760:three_prime_UTR
TTGCTGTTATATATTTGTAC+TGG 0.446155 5_3:+67524092 Msa0826760:three_prime_UTR
TGATGATGCTGACAACGAAT+TGG 0.451575 5_3:+67523222 Msa0826760:CDS
CAGCGGATATCCTTACTTGA+TGG 0.456039 5_3:-67524115 None:intergenic
CTTGATATTCAACTTCCATA+AGG 0.468058 5_3:+67523428 Msa0826760:CDS
GATAATATTACTCAAGGAAC+TGG 0.478446 5_3:-67524033 None:intergenic
TTAGTCGTCAAGGGAAGGTT+AGG 0.481414 5_3:+67522771 Msa0826760:CDS
TTTGTACTGGCCATCAAGTA+AGG 0.483903 5_3:+67524105 Msa0826760:three_prime_UTR
TATAACAGCAATTGCAACAT+TGG 0.485991 5_3:-67524080 None:intergenic
CACTCAGAAGGAAAGAAGTA+AGG 0.487202 5_3:+67522817 Msa0826760:CDS
TAAGATGAATATACTTTGGA+GGG 0.496585 5_3:+67521389 Msa0826760:five_prime_UTR
AAAATCAAAATCAAAATCAA+TGG 0.504380 5_3:+67521641 Msa0826760:exon
TCTACAAAATTACAGAGCTT+GGG 0.509679 5_3:-67523039 None:intergenic
ATGCGTTGCAATTCTATGGA+TGG 0.526403 5_3:+67524286 Msa0826760:three_prime_UTR
GTGCTTCTCATTAGTCGTCA+AGG 0.528040 5_3:+67522761 Msa0826760:CDS
TTAAGATGAATATACTTTGG+AGG 0.532007 5_3:+67521388 Msa0826760:five_prime_UTR
TGCTCGGTTGATAGCTGCAC+AGG 0.540072 5_3:+67523896 Msa0826760:CDS
TGTCTTTCAGGATTCATTGG+TGG 0.541167 5_3:+67523992 Msa0826760:intron
TGCTTCTCATTAGTCGTCAA+GGG 0.558103 5_3:+67522762 Msa0826760:CDS
AATTACAGAGCTTGGGAGCA+CGG 0.567062 5_3:-67523032 None:intergenic
GAATCACTCCACTGAGCTCA+CGG 0.569834 5_3:-67523005 None:intergenic
GGTGTTGATCTATTTGCTTG+AGG 0.579282 5_3:+67524363 Msa0826760:three_prime_UTR
TCTCATTAGTCGTCAAGGGA+AGG 0.585870 5_3:+67522766 Msa0826760:CDS
AGATGAATATACTTTGGAGG+GGG 0.599675 5_3:+67521391 Msa0826760:five_prime_UTR
TTGTGCGATAATATTACTCA+AGG 0.602166 5_3:-67524039 None:intergenic
ATTGGTGGAGACTGCTAAGG+AGG 0.602252 5_3:+67524007 Msa0826760:CDS
TTAGAAGAAGATGAAGATCT+GGG 0.603610 5_3:-67521506 None:intergenic
GTATTCACCTTACACTCAGA+AGG 0.607833 5_3:+67522805 Msa0826760:CDS
TTCATTGGTGGAGACTGCTA+AGG 0.613718 5_3:+67524004 Msa0826760:CDS
ATTCAACTTAACAATAAACA+TGG 0.633889 5_3:-67524216 None:intergenic
AAGAAGATGAAGATCTGGGT+CGG 0.649063 5_3:-67521502 None:intergenic
AAGATGAATATACTTTGGAG+GGG 0.650701 5_3:+67521390 Msa0826760:five_prime_UTR
AAGGTAATCCGTGAGCTCAG+TGG 0.653418 5_3:+67522997 Msa0826760:intron
GTTTCTTTCTGGACTCACTG+TGG 0.659463 5_3:-67521476 None:intergenic
GCACAAGCTACTAAATAAGG+AGG 0.668635 5_3:+67524056 Msa0826760:exon
AATGCCAACAATTACAACAG+CGG 0.693532 5_3:-67524132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAAAAATTTAAATACA+AGG - chr5_3:67522306-67522325 None:intergenic 10.0%
!! CAATAATAATAATAATAATC+AGG - chr5_3:67524341-67524360 None:intergenic 10.0%
!!! ATTGATTTTGATTTTGATTT+TGG - chr5_3:67521642-67521661 None:intergenic 15.0%
!! AAAATCAAAATCAAAATCAA+TGG + chr5_3:67521641-67521660 Msa0826760:exon 15.0%
!!! TATTTTCAAATAAAATGAGA+GGG - chr5_3:67522094-67522113 None:intergenic 15.0%
!!! TTATTTTCAAATAAAATGAG+AGG - chr5_3:67522095-67522114 None:intergenic 15.0%
!!! AATTGGATGTATTTTTTATA+CGG + chr5_3:67522425-67522444 Msa0826760:intron 15.0%
!! GATATAAAGTTGTTTATAAA+AGG + chr5_3:67523070-67523089 Msa0826760:CDS 15.0%
!! ATATTATATCCTTAAGAAAA+GGG - chr5_3:67523339-67523358 None:intergenic 15.0%
!! TATATTATATCCTTAAGAAA+AGG - chr5_3:67523340-67523359 None:intergenic 15.0%
!! TATATCCATAATTCAAAATA+AGG + chr5_3:67523473-67523492 Msa0826760:intron 15.0%
!! GAAATATATTACATTAAACT+TGG - chr5_3:67523647-67523666 None:intergenic 15.0%
!! AATTTCATCAAGTATATAAT+AGG - chr5_3:67523835-67523854 None:intergenic 15.0%
!! AGATTAAGATGAATATACTT+TGG + chr5_3:67521385-67521404 Msa0826760:five_prime_UTR 20.0%
!! TTGTTGAATTGAAATTGAAA+TGG - chr5_3:67521567-67521586 None:intergenic 20.0%
!! AAGCTCATAACTTATTTAAA+CGG + chr5_3:67521986-67522005 Msa0826760:intron 20.0%
!!! TCTAAGAACTTTTAAATGAA+TGG + chr5_3:67522650-67522669 Msa0826760:intron 20.0%
!! ATAAGAAATCCTATTAACAA+CGG - chr5_3:67522695-67522714 None:intergenic 20.0%
!! ATTATCTGTATGTATTAACA+TGG + chr5_3:67522885-67522904 Msa0826760:intron 20.0%
!!! ATCTCATATTTTTATTGACA+AGG + chr5_3:67522978-67522997 Msa0826760:intron 20.0%
!! TATTTCCATAATTCAAAACA+AGG + chr5_3:67523661-67523680 Msa0826760:intron 20.0%
!! ATTCAACTTAACAATAAACA+TGG - chr5_3:67524219-67524238 None:intergenic 20.0%
! TTAAGATGAATATACTTTGG+AGG + chr5_3:67521388-67521407 Msa0826760:five_prime_UTR 25.0%
! TAAGATGAATATACTTTGGA+GGG + chr5_3:67521389-67521408 Msa0826760:five_prime_UTR 25.0%
!!! ACTTGACTATCTCTTTTTTT+CGG - chr5_3:67521453-67521472 None:intergenic 25.0%
!!! TGAATAACCTTAGTTAGTTT+TGG + chr5_3:67521854-67521873 Msa0826760:intron 25.0%
! TCACAAAAAAAAGACTCATT+CGG + chr5_3:67521945-67521964 Msa0826760:intron 25.0%
! AGCTCATAACTTATTTAAAC+GGG + chr5_3:67521987-67522006 Msa0826760:intron 25.0%
!!! GTAGTGTTGATTAAAATTAG+CGG - chr5_3:67522165-67522184 None:intergenic 25.0%
! AATCACTTGAACACTTAAAT+TGG + chr5_3:67522408-67522427 Msa0826760:intron 25.0%
! ATTCCAAGTACAAAAATACA+AGG - chr5_3:67522583-67522602 None:intergenic 25.0%
!! AGAACTTTTAAATGAATGGT+AGG + chr5_3:67522654-67522673 Msa0826760:intron 25.0%
! TAAGAAATCCTATTAACAAC+GGG - chr5_3:67522694-67522713 None:intergenic 25.0%
! TAATAAAGAGAATAAGCGAT+AGG - chr5_3:67522853-67522872 None:intergenic 25.0%
! ATCGCTTATTCTCTTTATTA+TGG + chr5_3:67522853-67522872 Msa0826760:intron 25.0%
! AGATGTAAATACACATATCA+AGG - chr5_3:67522962-67522981 None:intergenic 25.0%
!! TGAAATGATTCATCATTTTG+TGG + chr5_3:67523252-67523271 Msa0826760:CDS 25.0%
! GATATATATCGCATTAAACT+TGG - chr5_3:67523459-67523478 None:intergenic 25.0%
! GATTATTAATAGGAGTTACA+GGG - chr5_3:67523510-67523529 None:intergenic 25.0%
! TCCTATTAATAATCCTTTCA+TGG + chr5_3:67523516-67523535 Msa0826760:intron 25.0%
! ACCATGAAAGGATTATTAAT+AGG - chr5_3:67523520-67523539 None:intergenic 25.0%
! TATTAATAATCCTTTCATGG+TGG + chr5_3:67523519-67523538 Msa0826760:intron 25.0%
! GATTATTAATAGGAGTTACA+GGG - chr5_3:67523510-67523529 None:intergenic 25.0%
! TCCTATTAATAATCCTTTCA+TGG + chr5_3:67523516-67523535 Msa0826760:intron 25.0%
! ACCATGAAAGGATTATTAAT+AGG - chr5_3:67523520-67523539 None:intergenic 25.0%
! TATTAATAATCCTTTCATGG+TGG + chr5_3:67523519-67523538 Msa0826760:intron 25.0%
! CATGATTAAAAACAAAGAAC+AGG - chr5_3:67523807-67523826 None:intergenic 25.0%
!!! CTGTTCTTTGTTTTTAATCA+TGG + chr5_3:67523805-67523824 Msa0826760:intron 25.0%
!!! TCTTTGTTTTTAATCATGGA+AGG + chr5_3:67523809-67523828 Msa0826760:intron 25.0%
! AAGACAATGTCATACAAATT+TGG - chr5_3:67523978-67523997 None:intergenic 25.0%
!! TTGCTGTTATATATTTGTAC+TGG + chr5_3:67524092-67524111 Msa0826760:three_prime_UTR 25.0%
! AAGATGAATATACTTTGGAG+GGG + chr5_3:67521390-67521409 Msa0826760:five_prime_UTR 30.0%
GTGTTAAAATGAAAAAGGGA+GGG + chr5_3:67521413-67521432 Msa0826760:five_prime_UTR 30.0%
TTAGAAGAAGATGAAGATCT+GGG - chr5_3:67521509-67521528 None:intergenic 30.0%
TCAATCGAATGAAGTAACTA+AGG - chr5_3:67521837-67521856 None:intergenic 30.0%
CGATAATTGATGAGCTTATA+GGG - chr5_3:67522236-67522255 None:intergenic 30.0%
ACGATAATTGATGAGCTTAT+AGG - chr5_3:67522237-67522256 None:intergenic 30.0%
CTATGAATCATGACTAACTA+AGG - chr5_3:67522280-67522299 None:intergenic 30.0%
!! TCACCTTGTATTTTTGTACT+TGG + chr5_3:67522577-67522596 Msa0826760:intron 30.0%
AAGAAATCCTATTAACAACG+GGG - chr5_3:67522693-67522712 None:intergenic 30.0%
CACAAAGTGTATCTACATTT+AGG - chr5_3:67522744-67522763 None:intergenic 30.0%
! TATTAACATGGTGATAGTGA+TGG + chr5_3:67522897-67522916 Msa0826760:intron 30.0%
TCTACAAAATTACAGAGCTT+GGG - chr5_3:67523042-67523061 None:intergenic 30.0%
AGCAGATATTCATTATACCA+TGG - chr5_3:67523168-67523187 None:intergenic 30.0%
! ATTTTGTGGAGATTCTTGAT+CGG + chr5_3:67523266-67523285 Msa0826760:CDS 30.0%
CTTGATATTCAACTTCCATA+AGG + chr5_3:67523428-67523447 Msa0826760:CDS 30.0%
TTAAACTTGGACATACCTTA+TGG - chr5_3:67523446-67523465 None:intergenic 30.0%
!!! GTAGGCCTTATTTTGAATTA+TGG - chr5_3:67523481-67523500 None:intergenic 30.0%
GGATTATTAATAGGAGTTAC+AGG - chr5_3:67523511-67523530 None:intergenic 30.0%
GAATATAATGACAGGTGATA+TGG - chr5_3:67523574-67523593 None:intergenic 30.0%
ACTAGACTGAATATAATGAC+AGG - chr5_3:67523582-67523601 None:intergenic 30.0%
GGATTATTAATAGGAGTTAC+AGG - chr5_3:67523511-67523530 None:intergenic 30.0%
ACTAGACCAATAATAATGAC+AGG - chr5_3:67523770-67523789 None:intergenic 30.0%
CTTGATGAAATTCTAATTGC+TGG + chr5_3:67523843-67523862 Msa0826760:CDS 30.0%
! TATCAATGGTCTTTCTCTTT+TGG + chr5_3:67523919-67523938 Msa0826760:intron 30.0%
! ATCAATGGTCTTTCTCTTTT+GGG + chr5_3:67523920-67523939 Msa0826760:intron 30.0%
TTTGTATGACATTGTCTTTC+AGG + chr5_3:67523980-67523999 Msa0826760:intron 30.0%
GATAATATTACTCAAGGAAC+TGG - chr5_3:67524036-67524055 None:intergenic 30.0%
TTGTGCGATAATATTACTCA+AGG - chr5_3:67524042-67524061 None:intergenic 30.0%
TATAACAGCAATTGCAACAT+TGG - chr5_3:67524083-67524102 None:intergenic 30.0%
! TTGTAATTGTTGGCATTTTG+AGG + chr5_3:67524138-67524157 Msa0826760:three_prime_UTR 30.0%
TTATATGCGTTGCAATTCTA+TGG + chr5_3:67524282-67524301 Msa0826760:three_prime_UTR 30.0%
!! GCTTTGAGATTGAATTTCAT+TGG + chr5_3:67524413-67524432 Msa0826760:three_prime_UTR 30.0%
! AGATGAATATACTTTGGAGG+GGG + chr5_3:67521391-67521410 Msa0826760:five_prime_UTR 35.0%
!! AGGGGGTGTTAAAATGAAAA+AGG + chr5_3:67521408-67521427 Msa0826760:five_prime_UTR 35.0%
!! GGGGGTGTTAAAATGAAAAA+GGG + chr5_3:67521409-67521428 Msa0826760:five_prime_UTR 35.0%
GGTGTTAAAATGAAAAAGGG+AGG + chr5_3:67521412-67521431 Msa0826760:five_prime_UTR 35.0%
GTTAGAAGAAGATGAAGATC+TGG - chr5_3:67521510-67521529 None:intergenic 35.0%
CGAAAGTAGAAGAAGAAGAA+AGG - chr5_3:67521679-67521698 None:intergenic 35.0%
ATCAAGTCTTAGGTTCTGTT+TGG + chr5_3:67521884-67521903 Msa0826760:intron 35.0%
! GCTTATAAGCTAGCTTATAG+CGG - chr5_3:67522209-67522228 None:intergenic 35.0%
! TTTTGACACCAAGTTTGACA+TGG + chr5_3:67522332-67522351 Msa0826760:intron 35.0%
!! TATACGGTGTCAACTTTTTG+CGG + chr5_3:67522441-67522460 Msa0826760:intron 35.0%
AAAGAATGCTGTTATGTTGG+AGG - chr5_3:67522505-67522524 None:intergenic 35.0%
ACGAAAGAATGCTGTTATGT+TGG - chr5_3:67522508-67522527 None:intergenic 35.0%
ACAAGGTGAAAATCACTTTC+AGG - chr5_3:67522566-67522585 None:intergenic 35.0%
AGGATGTTTATCATGCAATG+TGG - chr5_3:67522942-67522961 None:intergenic 35.0%
CTCTACAAAATTACAGAGCT+TGG - chr5_3:67523043-67523062 None:intergenic 35.0%
! AGCTCTGTAATTTTGTAGAG+TGG + chr5_3:67523043-67523062 Msa0826760:CDS 35.0%
! TGTAATTTTGTAGAGTGGAG+AGG + chr5_3:67523048-67523067 Msa0826760:CDS 35.0%
!! CAGCTTTATAGTCTTTTGCA+AGG + chr5_3:67523111-67523130 Msa0826760:intron 35.0%
GCTTGATGTTTAATTGACCA+TGG + chr5_3:67523148-67523167 Msa0826760:intron 35.0%
! GAGATTCTTGATCGGTATTT+TGG + chr5_3:67523274-67523293 Msa0826760:CDS 35.0%
! TTGAAGAGTCCCTTTTCTTA+AGG + chr5_3:67523327-67523346 Msa0826760:intron 35.0%
GTGTCACACTAACTTGATAA+TGG + chr5_3:67523373-67523392 Msa0826760:intron 35.0%
ATGGTCACTTGTCAATTTAC+AGG + chr5_3:67523392-67523411 Msa0826760:intron 35.0%
CAATTTACAGGTCTGTGAAT+TGG + chr5_3:67523404-67523423 Msa0826760:intron 35.0%
GGTGATATGGTCAATAATCA+AGG - chr5_3:67523561-67523580 None:intergenic 35.0%
AAACAAAGAACAGGTCAGAA+GGG - chr5_3:67523610-67523629 None:intergenic 35.0%
CATGATCACAAACAAAGAAC+AGG - chr5_3:67523619-67523638 None:intergenic 35.0%
! CTGTTCTTTGTTTGTGATCA+TGG + chr5_3:67523617-67523636 Msa0826760:intron 35.0%
! TCTTTGTTTGTGATCATGGA+AGG + chr5_3:67523621-67523640 Msa0826760:intron 35.0%
!!! GTAGGCCTTGTTTTGAATTA+TGG - chr5_3:67523669-67523688 None:intergenic 35.0%
AATAATAATGACAGGCGATG+TGG - chr5_3:67523762-67523781 None:intergenic 35.0%
ACATCGCCTGTCATTATTAT+TGG + chr5_3:67523761-67523780 Msa0826760:intron 35.0%
AAACAAAGAACAGGTCAGAA+GGG - chr5_3:67523610-67523629 None:intergenic 35.0%
AAAACAAAGAACAGGTCAGA+AGG - chr5_3:67523799-67523818 None:intergenic 35.0%
CATTGTCTTTCAGGATTCAT+TGG + chr5_3:67523989-67524008 Msa0826760:intron 35.0%
ATCGCACAAGCTACTAAATA+AGG + chr5_3:67524053-67524072 Msa0826760:CDS 35.0%
ATATCCGCTGTTGTAATTGT+TGG + chr5_3:67524128-67524147 Msa0826760:three_prime_UTR 35.0%
AATGCCAACAATTACAACAG+CGG - chr5_3:67524135-67524154 None:intergenic 35.0%
!! ATTGTTGGCATTTTGAGGAA+TGG + chr5_3:67524143-67524162 Msa0826760:three_prime_UTR 35.0%
TTGAGGAATGGAGAAATGTT+TGG + chr5_3:67524155-67524174 Msa0826760:three_prime_UTR 35.0%
AAGAAGATGAAGATCTGGGT+CGG - chr5_3:67521505-67521524 None:intergenic 40.0%
CGCATCACCAAAACTAACTA+AGG - chr5_3:67521864-67521883 None:intergenic 40.0%
TAGGTTCTGTTTGGCAATGA+CGG + chr5_3:67521893-67521912 Msa0826760:intron 40.0%
!! TAAGCTAGCTTATAGCGGAT+AGG - chr5_3:67522204-67522223 None:intergenic 40.0%
TGACTAACTAAGGCTCTGTT+TGG - chr5_3:67522270-67522289 None:intergenic 40.0%
AACAGCATTCTTTCGTGTTC+TGG + chr5_3:67522512-67522531 Msa0826760:intron 40.0%
ACAGCATTCTTTCGTGTTCT+GGG + chr5_3:67522513-67522532 Msa0826760:intron 40.0%
TGCTTCTCATTAGTCGTCAA+GGG + chr5_3:67522762-67522781 Msa0826760:CDS 40.0%
GTATTCACCTTACACTCAGA+AGG + chr5_3:67522805-67522824 Msa0826760:CDS 40.0%
CTTCTTTCCTTCTGAGTGTA+AGG - chr5_3:67522815-67522834 None:intergenic 40.0%
CACTCAGAAGGAAAGAAGTA+AGG + chr5_3:67522817-67522836 Msa0826760:CDS 40.0%
TTGCAAGGCAATCTTCTGTT+TGG + chr5_3:67523126-67523145 Msa0826760:intron 40.0%
! TGATGATGCTGACAACGAAT+TGG + chr5_3:67523222-67523241 Msa0826760:CDS 40.0%
GGAGTTACAGGGAAATAAGT+AGG - chr5_3:67523499-67523518 None:intergenic 40.0%
TAATCAAGGCTCATTCAGTG+TGG - chr5_3:67523547-67523566 None:intergenic 40.0%
CAAACAAAGAACAGGTCAGA+AGG - chr5_3:67523611-67523630 None:intergenic 40.0%
GGAGTTACAGGGAATTAAGT+AGG - chr5_3:67523687-67523706 None:intergenic 40.0%
TAATTGAGGCTCATTCAGTG+TGG - chr5_3:67523735-67523754 None:intergenic 40.0%
CGAGCAAAAAAACTGTTGCT+CGG + chr5_3:67523880-67523899 Msa0826760:CDS 40.0%
TGTCTTTCAGGATTCATTGG+TGG + chr5_3:67523992-67524011 Msa0826760:intron 40.0%
GCACAAGCTACTAAATAAGG+AGG + chr5_3:67524056-67524075 Msa0826760:exon 40.0%
! TTTGTACTGGCCATCAAGTA+AGG + chr5_3:67524105-67524124 Msa0826760:three_prime_UTR 40.0%
ATGCGTTGCAATTCTATGGA+TGG + chr5_3:67524286-67524305 Msa0826760:three_prime_UTR 40.0%
!! GGTGTTGATCTATTTGCTTG+AGG + chr5_3:67524363-67524382 Msa0826760:three_prime_UTR 40.0%
GATCTATTTGCTTGAGGATC+AGG + chr5_3:67524369-67524388 Msa0826760:three_prime_UTR 40.0%
GTTTCTTTCTGGACTCACTG+TGG - chr5_3:67521479-67521498 None:intergenic 45.0%
! TGGTGATGCGATCAAGTCTT+AGG + chr5_3:67521874-67521893 Msa0826760:intron 45.0%
ACCAAGTTTGACATGGACAC+TGG + chr5_3:67522339-67522358 Msa0826760:intron 45.0%
TCCAGTGTCCATGTCAAACT+TGG - chr5_3:67522343-67522362 None:intergenic 45.0%
GTGCTTCTCATTAGTCGTCA+AGG + chr5_3:67522761-67522780 Msa0826760:CDS 45.0%
TCTCATTAGTCGTCAAGGGA+AGG + chr5_3:67522766-67522785 Msa0826760:CDS 45.0%
TTAGTCGTCAAGGGAAGGTT+AGG + chr5_3:67522771-67522790 Msa0826760:CDS 45.0%
GGAAGGTTAGGCTCACAAAA+TGG + chr5_3:67522783-67522802 Msa0826760:CDS 45.0%
AATTACAGAGCTTGGGAGCA+CGG - chr5_3:67523035-67523054 None:intergenic 45.0%
GGCGATGTGGTCAATAATTG+AGG - chr5_3:67523749-67523768 None:intergenic 45.0%
GATAGCTGCACAGGTATCAA+TGG + chr5_3:67523905-67523924 Msa0826760:intron 45.0%
TTCATTGGTGGAGACTGCTA+AGG + chr5_3:67524004-67524023 Msa0826760:CDS 45.0%
CAGCGGATATCCTTACTTGA+TGG - chr5_3:67524118-67524137 None:intergenic 45.0%
!! ATTATTATTATTATTATTGT+TGG + chr5_3:67524342-67524361 Msa0826760:three_prime_UTR 5.0%
TGGGTCGGTCAGTTTCTTTC+TGG - chr5_3:67521490-67521509 None:intergenic 50.0%
CCTATTAACAACGGGGAGAG+AGG - chr5_3:67522686-67522705 None:intergenic 50.0%
CCTCTCTCCCCGTTGTTAAT+AGG + chr5_3:67522683-67522702 Msa0826760:intron 50.0%
AAGGTAATCCGTGAGCTCAG+TGG + chr5_3:67522997-67523016 Msa0826760:intron 50.0%
GAATCACTCCACTGAGCTCA+CGG - chr5_3:67523008-67523027 None:intergenic 50.0%
CAGTGTGGATCCACCATGAA+AGG - chr5_3:67523532-67523551 None:intergenic 50.0%
CAGTGTGGATCCACCATGAA+AGG - chr5_3:67523532-67523551 None:intergenic 50.0%
TCTAATTGCTGGCGAGCTTC+AGG + chr5_3:67523854-67523873 Msa0826760:CDS 50.0%
ATTGGTGGAGACTGCTAAGG+AGG + chr5_3:67524007-67524026 Msa0826760:CDS 50.0%
!! TGCTCGGTTGATAGCTGCAC+AGG + chr5_3:67523896-67523915 Msa0826760:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 67521382 67524501 67521382 ID=Msa0826760;Name=Msa0826760
chr5_3 mRNA 67521382 67524501 67521382 ID=Msa0826760-mRNA-1;Parent=Msa0826760;Name=Msa0826760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=278|1|1|1|0.83|0.85|7|428|161
chr5_3 exon 67521382 67521662 67521382 ID=Msa0826760-mRNA-1:exon:21141;Parent=Msa0826760-mRNA-1
chr5_3 exon 67522752 67522838 67522752 ID=Msa0826760-mRNA-1:exon:21142;Parent=Msa0826760-mRNA-1
chr5_3 exon 67523000 67523091 67523000 ID=Msa0826760-mRNA-1:exon:21143;Parent=Msa0826760-mRNA-1
chr5_3 exon 67523192 67523300 67523192 ID=Msa0826760-mRNA-1:exon:21144;Parent=Msa0826760-mRNA-1
chr5_3 exon 67523414 67523449 67523414 ID=Msa0826760-mRNA-1:exon:21145;Parent=Msa0826760-mRNA-1
chr5_3 exon 67523831 67523917 67523831 ID=Msa0826760-mRNA-1:exon:21146;Parent=Msa0826760-mRNA-1
chr5_3 exon 67524002 67524501 67524002 ID=Msa0826760-mRNA-1:exon:21147;Parent=Msa0826760-mRNA-1
chr5_3 five_prime_UTR 67521382 67521659 67521382 ID=Msa0826760-mRNA-1:five_prime_utr;Parent=Msa0826760-mRNA-1
chr5_3 CDS 67521660 67521662 67521660 ID=Msa0826760-mRNA-1:cds;Parent=Msa0826760-mRNA-1
chr5_3 CDS 67522752 67522838 67522752 ID=Msa0826760-mRNA-1:cds;Parent=Msa0826760-mRNA-1
chr5_3 CDS 67523000 67523091 67523000 ID=Msa0826760-mRNA-1:cds;Parent=Msa0826760-mRNA-1
chr5_3 CDS 67523192 67523300 67523192 ID=Msa0826760-mRNA-1:cds;Parent=Msa0826760-mRNA-1
chr5_3 CDS 67523414 67523449 67523414 ID=Msa0826760-mRNA-1:cds;Parent=Msa0826760-mRNA-1
chr5_3 CDS 67523831 67523917 67523831 ID=Msa0826760-mRNA-1:cds;Parent=Msa0826760-mRNA-1
chr5_3 CDS 67524002 67524073 67524002 ID=Msa0826760-mRNA-1:cds;Parent=Msa0826760-mRNA-1
chr5_3 three_prime_UTR 67524074 67524501 67524074 ID=Msa0826760-mRNA-1:three_prime_utr;Parent=Msa0826760-mRNA-1
Gene Sequence

>Msa0826760

ATGATACACTTTGTGCTTCTCATTAGTCGTCAAGGGAAGGTTAGGCTCACAAAATGGTATTCACCTTACACTCAGAAGGAAAGAAGTAAGGTAATCCGTGAGCTCAGTGGAGTGATTCTTAGCCGTGCTCCCAAGCTCTGTAATTTTGTAGAGTGGAGAGGATATAAAGTTGTTTATAAAAGATATGCTAGTCTATATTTCTGTATGTGTATTGATGATGCTGACAACGAATTGGAAGTACTTGAAATGATTCATCATTTTGTGGAGATTCTTGATCGGTATTTTGGCAGTGTCTGTGAATTGGACTTGATATTCAACTTCCATAAGGCCTATTATATACTTGATGAAATTCTAATTGCTGGCGAGCTTCAGGAGTCGAGCAAAAAAACTGTTGCTCGGTTGATAGCTGCACAGGATTCATTGGTGGAGACTGCTAAGGAGGAAGCCAGTTCCTTGAGTAATATTATCGCACAAGCTACTAAATAA

Protein sequence

>Msa0826760

MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILSRAPKLCNFVEWRGYKVVYKRYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATK*