Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041630 | XP_013469975.1 | 96.442 | 534 | 12 | 2 | 1 | 534 | 1 | 527 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041630 | sp|P93039|NAT4_ARATH | 69.143 | 525 | 156 | 3 | 12 | 533 | 4 | 525 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028690 | Msa0041630 | 0.840209 | 9.982152e-58 | -8.615850e-47 |
| Msa0041630 | Msa0089190 | 0.905084 | 6.237360e-80 | -8.615850e-47 |
| Msa0041630 | Msa0119240 | 0.836836 | 7.410019e-57 | -8.615850e-47 |
| Msa0041630 | Msa0136000 | 0.898604 | 4.506723e-77 | -8.615850e-47 |
| Msa0041630 | Msa0168750 | 0.827897 | 1.214001e-54 | -8.615850e-47 |
| Msa0041630 | Msa0189990 | 0.803932 | 2.752484e-49 | -8.615850e-47 |
| Msa0041630 | Msa0286360 | 0.825749 | 3.956167e-54 | -8.615850e-47 |
| Msa0041630 | Msa0307740 | 0.850872 | 1.282061e-60 | -8.615850e-47 |
| Msa0041630 | Msa0343210 | 0.812843 | 3.456684e-51 | -8.615850e-47 |
| Msa0041630 | Msa0547370 | 0.807911 | 4.010454e-50 | -8.615850e-47 |
| Msa0041630 | Msa0557240 | 0.805027 | 1.627389e-49 | -8.615850e-47 |
| Msa0041630 | Msa0658190 | 0.822456 | 2.346467e-53 | -8.615850e-47 |
| Msa0041630 | Msa0682110 | 0.822301 | 2.548613e-53 | -8.615850e-47 |
| Msa0041630 | Msa0682160 | 0.812068 | 5.104705e-51 | -8.615850e-47 |
| Msa0041630 | Msa0737690 | 0.804176 | 2.449938e-49 | -8.615850e-47 |
| Msa0041630 | Msa0769540 | 0.839526 | 1.502935e-57 | -8.615850e-47 |
| Msa0041630 | Msa0773030 | 0.821616 | 3.672153e-53 | -8.615850e-47 |
| Msa0041630 | Msa0810330 | 0.857140 | 1.998727e-62 | -8.615850e-47 |
| Msa0041630 | Msa0850640 | 0.861444 | 1.021610e-63 | -8.615850e-47 |
| Msa0041630 | Msa0907880 | 0.839020 | 2.033954e-57 | -8.615850e-47 |
| Msa0041630 | Msa1092310 | 0.807016 | 6.210954e-50 | -8.615850e-47 |
| Msa0041630 | Msa1131270 | 0.807534 | 4.823731e-50 | -8.615850e-47 |
| Msa0041630 | Msa1136760 | 0.803089 | 4.116810e-49 | -8.615850e-47 |
| Msa0041630 | Msa1202800 | 0.815706 | 8.059430e-52 | -8.615850e-47 |
| Msa0041630 | Msa1203440 | 0.820622 | 6.224893e-53 | -8.615850e-47 |
| Msa0041630 | Msa1211940 | 0.824179 | 9.287366e-54 | -8.615850e-47 |
| Msa0041630 | Msa1212080 | 0.807401 | 5.145654e-50 | -8.615850e-47 |
| Msa0041630 | Msa1255210 | 0.812345 | 4.441513e-51 | -8.615850e-47 |
| Msa0041630 | Msa1295650 | 0.806901 | 6.567997e-50 | -8.615850e-47 |
| Msa0041630 | Msa1344450 | 0.914244 | 2.405977e-84 | -8.615850e-47 |
| Msa0041630 | Msa1395110 | 0.808169 | 3.534501e-50 | -8.615850e-47 |
| Msa0041630 | Msa1413450 | 0.848076 | 7.717786e-60 | -8.615850e-47 |
| Msa0041630 | Msa1430950 | 0.850996 | 1.182853e-60 | -8.615850e-47 |
| Msa0041630 | Msa1455200 | 0.804502 | 2.094849e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041630 | MtrunA17_Chr1g0207021 | 96.442 | 534 | 12 | 2 | 1 | 534 | 1 | 527 | 0.0 | 1028 |
| Msa0041630 | MtrunA17_Chr3g0117941 | 60.075 | 536 | 206 | 4 | 1 | 533 | 1 | 531 | 0.0 | 657 |
| Msa0041630 | MtrunA17_Chr8g0364611 | 59.925 | 534 | 205 | 4 | 6 | 533 | 2 | 532 | 0.0 | 657 |
| Msa0041630 | MtrunA17_Chr4g0059331 | 59.515 | 536 | 209 | 4 | 1 | 533 | 1 | 531 | 0.0 | 650 |
| Msa0041630 | MtrunA17_Chr5g0414131 | 59.316 | 526 | 207 | 5 | 12 | 533 | 15 | 537 | 0.0 | 625 |
| Msa0041630 | MtrunA17_Chr3g0134911 | 54.827 | 549 | 208 | 6 | 19 | 533 | 42 | 584 | 0.0 | 605 |
| Msa0041630 | MtrunA17_Chr5g0405471 | 54.596 | 544 | 217 | 7 | 12 | 533 | 26 | 561 | 0.0 | 582 |
| Msa0041630 | MtrunA17_Chr8g0379171 | 53.802 | 526 | 234 | 4 | 12 | 534 | 5 | 524 | 0.0 | 579 |
| Msa0041630 | MtrunA17_Chr2g0284061 | 54.423 | 520 | 227 | 5 | 19 | 534 | 11 | 524 | 0.0 | 575 |
| Msa0041630 | MtrunA17_Chr3g0119521 | 55.792 | 518 | 220 | 4 | 19 | 532 | 6 | 518 | 0.0 | 565 |
| Msa0041630 | MtrunA17_Chr1g0154001 | 52.132 | 516 | 240 | 4 | 20 | 533 | 36 | 546 | 0.0 | 521 |
| Msa0041630 | MtrunA17_Chr8g0367361 | 32.768 | 531 | 302 | 7 | 41 | 531 | 253 | 768 | 1.49e-94 | 304 |
| Msa0041630 | MtrunA17_Chr5g0412181 | 32.897 | 535 | 316 | 7 | 27 | 527 | 168 | 693 | 1.68e-93 | 300 |
| Msa0041630 | MtrunA17_Chr2g0320981 | 32.096 | 539 | 317 | 10 | 31 | 531 | 151 | 678 | 2.51e-87 | 283 |
| Msa0041630 | MtrunA17_Chr4g0027121 | 32.000 | 525 | 311 | 8 | 44 | 531 | 171 | 686 | 1.71e-85 | 278 |
| Msa0041630 | MtrunA17_Chr2g0332871 | 31.693 | 508 | 294 | 11 | 47 | 531 | 166 | 643 | 5.04e-77 | 255 |
| Msa0041630 | MtrunA17_Chr8g0379181 | 51.852 | 54 | 26 | 0 | 407 | 460 | 7 | 60 | 3.21e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041630 | AT1G49960.1 | 69.143 | 525 | 156 | 3 | 12 | 533 | 4 | 525 | 0.0 | 712 |
| Msa0041630 | AT5G62890.1 | 60.075 | 536 | 206 | 5 | 1 | 533 | 1 | 531 | 0.0 | 649 |
| Msa0041630 | AT5G62890.2 | 60.075 | 536 | 206 | 5 | 1 | 533 | 1 | 531 | 0.0 | 649 |
| Msa0041630 | AT5G62890.3 | 60.075 | 536 | 206 | 5 | 1 | 533 | 1 | 531 | 0.0 | 649 |
| Msa0041630 | AT1G60030.1 | 58.476 | 525 | 212 | 4 | 12 | 533 | 16 | 537 | 0.0 | 638 |
| Msa0041630 | AT1G10540.1 | 56.075 | 535 | 226 | 4 | 5 | 533 | 7 | 538 | 0.0 | 622 |
| Msa0041630 | AT5G49990.2 | 58.022 | 536 | 213 | 4 | 1 | 533 | 1 | 527 | 0.0 | 606 |
| Msa0041630 | AT5G49990.3 | 58.022 | 536 | 213 | 4 | 1 | 533 | 1 | 527 | 0.0 | 606 |
| Msa0041630 | AT5G49990.1 | 58.022 | 536 | 213 | 4 | 1 | 533 | 1 | 527 | 0.0 | 606 |
| Msa0041630 | AT5G49990.4 | 58.022 | 536 | 213 | 4 | 1 | 533 | 1 | 527 | 0.0 | 606 |
| Msa0041630 | AT1G65550.1 | 53.008 | 532 | 235 | 5 | 12 | 533 | 14 | 540 | 0.0 | 589 |
| Msa0041630 | AT2G34190.1 | 55.385 | 520 | 222 | 5 | 19 | 534 | 11 | 524 | 0.0 | 580 |
| Msa0041630 | AT5G62890.4 | 61.438 | 459 | 168 | 5 | 8 | 460 | 3 | 458 | 0.0 | 560 |
| Msa0041630 | AT2G05760.1 | 53.089 | 518 | 234 | 4 | 19 | 532 | 6 | 518 | 0.0 | 553 |
| Msa0041630 | AT2G26510.1 | 50.484 | 517 | 249 | 4 | 20 | 533 | 36 | 548 | 2.67e-176 | 508 |
| Msa0041630 | AT1G10540.2 | 56.623 | 385 | 158 | 4 | 5 | 383 | 7 | 388 | 2.95e-150 | 436 |
| Msa0041630 | AT5G25420.1 | 45.595 | 454 | 177 | 4 | 12 | 464 | 26 | 410 | 1.75e-134 | 397 |
| Msa0041630 | AT2G26510.3 | 52.589 | 367 | 168 | 3 | 20 | 383 | 36 | 399 | 1.82e-124 | 371 |
| Msa0041630 | AT2G26510.2 | 51.977 | 354 | 164 | 3 | 20 | 370 | 36 | 386 | 1.93e-117 | 353 |
| Msa0041630 | AT4G38050.1 | 33.026 | 542 | 306 | 8 | 31 | 531 | 179 | 704 | 7.31e-86 | 280 |
| Msa0041630 | AT2G27810.1 | 32.605 | 549 | 322 | 9 | 21 | 531 | 163 | 701 | 1.56e-84 | 276 |
| Msa0041630 | AT2G27810.4 | 31.763 | 573 | 319 | 11 | 21 | 531 | 163 | 725 | 7.49e-80 | 265 |
| Msa0041630 | AT2G27810.2 | 34.180 | 433 | 257 | 7 | 21 | 431 | 163 | 589 | 6.17e-70 | 235 |
| Msa0041630 | AT2G27810.3 | 34.456 | 386 | 225 | 7 | 21 | 384 | 163 | 542 | 2.69e-60 | 208 |
Find 135 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGATTATCTGTTGTTTA+AGG | 0.174437 | 1_1:-72050007 | Msa0041630:three_prime_UTR |
| CACTATTCTTGTTCCTTTGA+TGG | 0.198717 | 1_1:-72053837 | Msa0041630:CDS |
| TCTTCCTGCATTGGTTATTC+TGG | 0.207207 | 1_1:-72052952 | Msa0041630:CDS |
| GTTTATAAATCAGGTAAATT+TGG | 0.217881 | 1_1:-72050971 | Msa0041630:intron |
| CAATACACGGCTGCTATTAT+TGG | 0.243252 | 1_1:+72050923 | None:intergenic |
| TGAAATAAATGAGTGCATTT+AGG | 0.262305 | 1_1:+72050176 | None:intergenic |
| AATTATAGTTGCTTACTTCT+TGG | 0.265429 | 1_1:-72050343 | Msa0041630:CDS |
| GCCTTGTTTGGCGCAGCAAC+TGG | 0.284735 | 1_1:-72051502 | Msa0041630:CDS |
| CTCGAATATCTCACACTATC+TGG | 0.311355 | 1_1:-72050531 | Msa0041630:CDS |
| CAGATTATTGCAATAGTTGT+AGG | 0.331238 | 1_1:-72050063 | Msa0041630:three_prime_UTR |
| ACTCTTCTGGATGCCTTGTT+TGG | 0.338596 | 1_1:-72051514 | Msa0041630:CDS |
| ACTATAATTGCAACAGTTGC+TGG | 0.341823 | 1_1:+72050357 | None:intergenic |
| ACTAGGCTTCCAGTGGTTAT+AGG | 0.341886 | 1_1:-72053635 | Msa0041630:CDS |
| TTAGGGTATAGGCACTCTTC+TGG | 0.345374 | 1_1:-72051527 | Msa0041630:intron |
| GTTCCCCTTGTAACTCTAAC+TGG | 0.347094 | 1_1:-72053147 | Msa0041630:CDS |
| TCTAGTATATCTACACAAAT+AGG | 0.351405 | 1_1:-72050102 | Msa0041630:three_prime_UTR |
| GACAGACCTGACGAGGATTA+AGG | 0.355818 | 1_1:+72053549 | None:intergenic |
| AATCTCTTGTAACAGTCAAC+TGG | 0.358889 | 1_1:-72051711 | Msa0041630:intron |
| TACTTAGCCGCGGTGTTGGC+TGG | 0.363924 | 1_1:-72051635 | Msa0041630:CDS |
| GGACATGGCCCTGCTCATAC+TGG | 0.367899 | 1_1:-72050510 | Msa0041630:CDS |
| TTCATCGCTGCATCAAGATT+TGG | 0.370746 | 1_1:-72051684 | Msa0041630:CDS |
| TTACTGTTGATTGCTGTGTT+AGG | 0.377345 | 1_1:-72054048 | Msa0041630:CDS |
| GGCCTAGGACTCTTTGTGAT+AGG | 0.379791 | 1_1:-72053126 | Msa0041630:CDS |
| TGAGCAGCTTCAGCTGGACT+TGG | 0.390320 | 1_1:-72050645 | Msa0041630:intron |
| CAACATTACATTGTTATGCT+TGG | 0.391706 | 1_1:-72053878 | Msa0041630:CDS |
| TATACTAGAAACTATGAGAT+TGG | 0.394869 | 1_1:+72050116 | None:intergenic |
| AGTTGCCGTACTGACCGATC+TGG | 0.396352 | 1_1:-72052419 | Msa0041630:CDS |
| ACTATTCTTGTTCCTTTGAT+GGG | 0.400549 | 1_1:-72053836 | Msa0041630:CDS |
| GTGTTAGGAGCTCACCTTCA+TGG | 0.405039 | 1_1:-72054033 | Msa0041630:CDS |
| GCTGGTGAAAGTGGTGGTGG+TGG | 0.405192 | 1_1:-72054115 | Msa0041630:CDS |
| AGTTTGATGATTTAGGGTAT+AGG | 0.429815 | 1_1:-72051538 | Msa0041630:intron |
| GCCTAGGACTCTTTGTGATA+GGG | 0.430014 | 1_1:-72053125 | Msa0041630:CDS |
| GGTGAAAGTGGTGGTGGTGG+TGG | 0.432523 | 1_1:-72054112 | Msa0041630:CDS |
| AGTCAAAATGCAGGATTGTT+GGG | 0.433330 | 1_1:-72051318 | Msa0041630:CDS |
| GAGTTCCGTATCCATTTCAA+TGG | 0.438140 | 1_1:-72052104 | Msa0041630:CDS |
| ATCAGAAGTGATGAGTTCTA+TGG | 0.440514 | 1_1:-72050234 | Msa0041630:CDS |
| CTGTGATGAGCAGCTTCAGC+TGG | 0.443945 | 1_1:-72050651 | Msa0041630:intron |
| ACTTCTGATATCCTGATTGA+AGG | 0.449917 | 1_1:+72050248 | None:intergenic |
| AAAATTCAGGACCTTCAATC+AGG | 0.451074 | 1_1:-72050259 | Msa0041630:CDS |
| TAGTCAAAATGCAGGATTGT+TGG | 0.453962 | 1_1:-72051319 | Msa0041630:CDS |
| TGTTGGGTCTAACACGCGTT+GGG | 0.454667 | 1_1:-72051302 | Msa0041630:CDS |
| TGCAGACATGGCTTGGAACT+AGG | 0.457743 | 1_1:-72053652 | Msa0041630:CDS |
| TTGGCAGATTGTGTTGAGAT+TGG | 0.458776 | 1_1:-72052975 | Msa0041630:CDS |
| CATCAAAGGAACAAGAATAG+TGG | 0.469158 | 1_1:+72053838 | None:intergenic |
| TCTGTACTTAGCCGCGGTGT+TGG | 0.469403 | 1_1:-72051639 | Msa0041630:CDS |
| TAGCCGCGGTGTTGGCTGGC+TGG | 0.472588 | 1_1:-72051631 | Msa0041630:intron |
| TGTGTTCTCTTTGCATATGT+CGG | 0.473198 | 1_1:-72050902 | Msa0041630:intron |
| AGTTCCGTATCCATTTCAAT+GGG | 0.475091 | 1_1:-72052103 | Msa0041630:CDS |
| ACAGTAAGTTGTTCCTTGAC+AGG | 0.477631 | 1_1:+72054064 | None:intergenic |
| ACTCTGTTGCAGACATGGCT+TGG | 0.479227 | 1_1:-72053659 | Msa0041630:CDS |
| TGTATTCCTTAATCCTCGTC+AGG | 0.479851 | 1_1:-72053555 | Msa0041630:intron |
| TGAGATTGGTCTTCCTGCAT+TGG | 0.479893 | 1_1:-72052961 | Msa0041630:CDS |
| CTAGGCCAGTTAGAGTTACA+AGG | 0.480139 | 1_1:+72053142 | None:intergenic |
| CTTGTTCCTTTGATGGGTGG+TGG | 0.483527 | 1_1:-72053830 | Msa0041630:CDS |
| AGTTGTTCCTTGACAGGATG+AGG | 0.494608 | 1_1:+72054070 | None:intergenic |
| ATACTAGAAACTATGAGATT+GGG | 0.495198 | 1_1:+72050117 | None:intergenic |
| ATATCACCAACATTGAAAGT+AGG | 0.500875 | 1_1:+72052075 | None:intergenic |
| TGCCCCTTGAATAGCTCTCA+TGG | 0.504533 | 1_1:+72053387 | None:intergenic |
| TTCTCTTGTTGCAATTGTAG+AGG | 0.505227 | 1_1:-72052034 | Msa0041630:intron |
| GAGAATGCCACAGAAATAGC+TGG | 0.506607 | 1_1:+72053590 | None:intergenic |
| GGTTAATTACTGCCGCTCCA+TGG | 0.508265 | 1_1:-72052397 | Msa0041630:intron |
| TATCACCAACATTGAAAGTA+GGG | 0.515321 | 1_1:+72052076 | None:intergenic |
| CTTGTAACTCTAACTGGCCT+AGG | 0.515850 | 1_1:-72053141 | Msa0041630:CDS |
| TCAACACTCTGTTGCAGACA+TGG | 0.520169 | 1_1:-72053664 | Msa0041630:CDS |
| TCTTTGTGATAGGGTTTCCA+AGG | 0.520833 | 1_1:-72053116 | Msa0041630:CDS |
| AGAGTCATTCAAATATCAGC+TGG | 0.521155 | 1_1:-72051273 | Msa0041630:CDS |
| ATGACCAGAATAACCAATGC+AGG | 0.528438 | 1_1:+72052948 | None:intergenic |
| TTTGCAGTCATAGTCACGAT+TGG | 0.530572 | 1_1:-72052515 | Msa0041630:CDS |
| TACAGATCAATGTTCATCGT+TGG | 0.532814 | 1_1:-72050594 | Msa0041630:CDS |
| GAGGTGGATCCAGTATGAGC+AGG | 0.532820 | 1_1:+72050501 | None:intergenic |
| TATTCTGGTCATCCTCTCCC+AGG | 0.534906 | 1_1:-72052937 | Msa0041630:intron |
| ACCCTATCACAAAGAGTCCT+AGG | 0.536299 | 1_1:+72053124 | None:intergenic |
| GTTGCCGTACTGACCGATCT+GGG | 0.544476 | 1_1:-72052418 | Msa0041630:CDS |
| GGGAGCCCTACTTTCAATGT+TGG | 0.546761 | 1_1:-72052081 | Msa0041630:CDS |
| CAATCCATGAGAGCTATTCA+AGG | 0.546761 | 1_1:-72053391 | Msa0041630:CDS |
| TCCAGTTGCTGCGCCAAACA+AGG | 0.547910 | 1_1:+72051501 | None:intergenic |
| AAAGATGCTCCTATAACCAC+TGG | 0.549867 | 1_1:+72053626 | None:intergenic |
| AATGAGTGCATTTAGGCTGA+AGG | 0.552105 | 1_1:+72050183 | None:intergenic |
| TAGTCACGATTGGAATTGCA+TGG | 0.554844 | 1_1:-72052505 | Msa0041630:CDS |
| TCTTATTCCAGCTATTTCTG+TGG | 0.555907 | 1_1:-72053597 | Msa0041630:CDS |
| CCCACTGTCACGGTGAGTTG+AGG | 0.557039 | 1_1:+72050296 | None:intergenic |
| ATTCTTGTTCCTTTGATGGG+TGG | 0.557666 | 1_1:-72053833 | Msa0041630:CDS |
| GCAGCTGGTGAAAGTGGTGG+TGG | 0.562807 | 1_1:-72054118 | Msa0041630:CDS |
| ATCGCTGCATCAAGATTTGG+CGG | 0.564712 | 1_1:-72051681 | Msa0041630:CDS |
| TCGTGACTATGACTGCAAAT+CGG | 0.567669 | 1_1:+72052519 | None:intergenic |
| CAGATAGTGTGAGATATTCG+AGG | 0.569216 | 1_1:+72050532 | None:intergenic |
| GAAAGAGAAACAATGGCAGC+TGG | 0.572288 | 1_1:-72054133 | None:intergenic |
| CCACAAAAGATTAAATCAAG+AGG | 0.575339 | 1_1:-72052548 | Msa0041630:CDS |
| ACCAGTGTCTCCCACTGTCA+CGG | 0.575457 | 1_1:+72050286 | None:intergenic |
| CGGCAGTAATTAACCCAGAT+CGG | 0.576534 | 1_1:+72052405 | None:intergenic |
| ATGAGTGCATTTAGGCTGAA+GGG | 0.578950 | 1_1:+72050184 | None:intergenic |
| AATCCATGAGAGCTATTCAA+GGG | 0.583596 | 1_1:-72053390 | Msa0041630:CDS |
| AGTCACGATTGGAATTGCAT+GGG | 0.588659 | 1_1:-72052504 | Msa0041630:CDS |
| ATGGGTTACTTACGCCATGA+AGG | 0.588819 | 1_1:+72054019 | None:intergenic |
| TAAAGTAACATACCTGGGAG+AGG | 0.589098 | 1_1:+72052925 | None:intergenic |
| ACCGTGACAGTGGGAGACAC+TGG | 0.589213 | 1_1:-72050287 | Msa0041630:CDS |
| TTATTGCATTTGCAGCTGAA+GGG | 0.589241 | 1_1:-72053916 | Msa0041630:intron |
| GCCTCAACTCACCGTGACAG+TGG | 0.591700 | 1_1:-72050297 | Msa0041630:CDS |
| ACGGCTGCTATTATTGGCAA+TGG | 0.594763 | 1_1:+72050929 | None:intergenic |
| CTTTGTGATAGGGTTTCCAA+GGG | 0.595097 | 1_1:-72053115 | Msa0041630:intron |
| TTAACCCAGATCGGTCAGTA+CGG | 0.603808 | 1_1:+72052414 | None:intergenic |
| CCTCAACTCACCGTGACAGT+GGG | 0.606252 | 1_1:-72050296 | Msa0041630:CDS |
| CAAAATGTACACTGATGCGG+TGG | 0.607400 | 1_1:+72051477 | None:intergenic |
| AGGTGGATCCAGTATGAGCA+GGG | 0.613316 | 1_1:+72050502 | None:intergenic |
| TGCTCATACTGGATCCACCT+CGG | 0.614287 | 1_1:-72050499 | Msa0041630:intron |
| ACAATGGCAGCTGGTGAAAG+TGG | 0.615031 | 1_1:-72054124 | Msa0041630:CDS |
| TTCCGTATCCATTTCAATGG+GGG | 0.618485 | 1_1:-72052101 | Msa0041630:CDS |
| ACATTGCCACCACCCATCAA+AGG | 0.619800 | 1_1:+72053824 | None:intergenic |
| ATCTCTTGTAACAGTCAACT+GGG | 0.625026 | 1_1:-72051710 | Msa0041630:intron |
| AATAGTGGAAACAATGACAA+TGG | 0.627526 | 1_1:+72053853 | None:intergenic |
| TTGTTGGGTCTAACACGCGT+TGG | 0.628068 | 1_1:-72051303 | Msa0041630:CDS |
| GTCACGATTGGAATTGCATG+GGG | 0.628860 | 1_1:-72052503 | Msa0041630:CDS |
| GTGACAGTGGGAGACACTGG+TGG | 0.631148 | 1_1:-72050284 | Msa0041630:CDS |
| ACACCGCGGCTAAGTACAGA+AGG | 0.633774 | 1_1:+72051642 | None:intergenic |
| AGATATTCGAGGAAATATTG+TGG | 0.636493 | 1_1:+72050543 | None:intergenic |
| GCTTGGAACTAGGCTTCCAG+TGG | 0.642697 | 1_1:-72053642 | Msa0041630:CDS |
| CCACCTTCTGTACTTAGCCG+CGG | 0.651344 | 1_1:-72051645 | Msa0041630:CDS |
| AAGATATATATGTACCGAGG+TGG | 0.652379 | 1_1:+72050485 | None:intergenic |
| CAAGGGGAACAGCACTGAGA+GGG | 0.652878 | 1_1:+72053160 | None:intergenic |
| TGCAAAGAGAACACAATACA+CGG | 0.654533 | 1_1:+72050910 | None:intergenic |
| GTCCAAGACTGACCATGGAG+CGG | 0.654864 | 1_1:+72052385 | None:intergenic |
| TATCTCACACTATCTGGACA+TGG | 0.661111 | 1_1:-72050525 | Msa0041630:CDS |
| TAGGCCAGTTAGAGTTACAA+GGG | 0.662208 | 1_1:+72053143 | None:intergenic |
| GGCGTGTTCACGACTCATAG+TGG | 0.664546 | 1_1:+72050317 | None:intergenic |
| TTACACAGACAGACCTGACG+AGG | 0.671529 | 1_1:+72053542 | None:intergenic |
| ATCCATGAGAGCTATTCAAG+GGG | 0.676734 | 1_1:-72053389 | Msa0041630:CDS |
| TGACAGTGGGAGACACTGGT+GGG | 0.683936 | 1_1:-72050283 | Msa0041630:CDS |
| ACAAGGGGAACAGCACTGAG+AGG | 0.687831 | 1_1:+72053159 | None:intergenic |
| CAACAAAATGTACACTGATG+CGG | 0.695683 | 1_1:+72051474 | None:intergenic |
| CCGCGGCTAAGTACAGAAGG+TGG | 0.698072 | 1_1:+72051645 | None:intergenic |
| ATGGCAGCTGGTGAAAGTGG+TGG | 0.716876 | 1_1:-72054121 | Msa0041630:CDS |
| AGGCCAGTTAGAGTTACAAG+GGG | 0.717548 | 1_1:+72053144 | None:intergenic |
| GTTCCGTATCCATTTCAATG+GGG | 0.719924 | 1_1:-72052102 | Msa0041630:CDS |
| CAACTGAATTGAGTACTCAG+TGG | 0.730095 | 1_1:+72052437 | None:intergenic |
| GTACCAGCCAGCCAACACCG+CGG | 0.843946 | 1_1:+72051628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTGTTATGTTTTG+AGG | - | chr1_1:72050378-72050397 | Msa0041630:CDS | 15.0% |
| !!! | TTAATTTTGTTATGTTTTGA+GGG | - | chr1_1:72050379-72050398 | Msa0041630:CDS | 15.0% |
| !! | TTGTTAAATAAATGATCATT+AGG | + | chr1_1:72051094-72051113 | None:intergenic | 15.0% |
| !!! | TTTAATTTTTAGTTTCCATT+TGG | - | chr1_1:72052355-72052374 | Msa0041630:intron | 15.0% |
| !! | AAACCAAATTACAACAAAAT+GGG | + | chr1_1:72050124-72050143 | None:intergenic | 20.0% |
| !! | AAAACCAAATTACAACAAAA+TGG | + | chr1_1:72050125-72050144 | None:intergenic | 20.0% |
| !! | CTTTATGAGAAACAAAAAAT+GGG | + | chr1_1:72050157-72050176 | None:intergenic | 20.0% |
| !! | ACTTTATGAGAAACAAAAAA+TGG | + | chr1_1:72050158-72050177 | None:intergenic | 20.0% |
| !!! | AACTTTTTCTTCATTTTGTT+TGG | - | chr1_1:72050340-72050359 | Msa0041630:CDS | 20.0% |
| !!! | ATTTAACAAACATACTCTTT+TGG | - | chr1_1:72051105-72051124 | Msa0041630:intron | 20.0% |
| !! | ATTAAAGTAAGAGATTTGAA+TGG | - | chr1_1:72051435-72051454 | Msa0041630:intron | 20.0% |
| !! | TGTTTACAACTAAATGTTAT+TGG | - | chr1_1:72051890-72051909 | Msa0041630:intron | 20.0% |
| !! | GTTTACAACTAAATGTTATT+GGG | - | chr1_1:72051891-72051910 | Msa0041630:intron | 20.0% |
| !! | AATATCAAAGTATAACCAAA+TGG | + | chr1_1:72052373-72052392 | None:intergenic | 20.0% |
| !! | AGTAAAAAACAAATTATCCA+AGG | + | chr1_1:72052743-72052762 | None:intergenic | 20.0% |
| !! | GTTTATAAATCAGGTAAATT+TGG | - | chr1_1:72053151-72053170 | Msa0041630:CDS | 20.0% |
| !!! | TAATTTTATCATCCTTATGT+TGG | - | chr1_1:72053285-72053304 | Msa0041630:intron | 20.0% |
| !!! | GAAATCACTTATTTGTTTTT+TGG | + | chr1_1:72053344-72053363 | None:intergenic | 20.0% |
| !!! | GAAAGAATTTGACATTTTAA+AGG | + | chr1_1:72053429-72053448 | None:intergenic | 20.0% |
| !! | ATCAAAATAAGAATCAAAGA+TGG | + | chr1_1:72053695-72053714 | None:intergenic | 20.0% |
| !!! | TATAGATTATCTGTTGTTTA+AGG | - | chr1_1:72054115-72054134 | Msa0041630:CDS | 20.0% |
| !!! | TAACCCATTTTGTTGTAATT+TGG | - | chr1_1:72050118-72050137 | Msa0041630:three_prime_UTR | 25.0% |
| !!! | TCTCATAAAGTTTTAAGCTT+TGG | - | chr1_1:72050167-72050186 | Msa0041630:three_prime_UTR | 25.0% |
| ! | CTTTACATAGATTGTTTACT+TGG | - | chr1_1:72050632-72050651 | Msa0041630:CDS | 25.0% |
| !! | ATGAATAGTTTTCATTAGCT+TGG | - | chr1_1:72050657-72050676 | Msa0041630:intron | 25.0% |
| !! | ATAGTGTCTTTTAATGCATT+TGG | - | chr1_1:72050846-72050865 | Msa0041630:intron | 25.0% |
| ! | GATGTATTTATTCATATTGC+AGG | - | chr1_1:72050931-72050950 | Msa0041630:CDS | 25.0% |
| ! | GTAAATAAAGTAACATACCT+GGG | + | chr1_1:72051205-72051224 | None:intergenic | 25.0% |
| ! | TGCTACACAAATATTTCAAA+AGG | + | chr1_1:72051260-72051279 | None:intergenic | 25.0% |
| ! | ATATCACTGAGTAAATTACA+AGG | + | chr1_1:72051344-72051363 | None:intergenic | 25.0% |
| !! | TAAATATAGACTAACTTGTG+TGG | - | chr1_1:72052137-72052156 | Msa0041630:intron | 25.0% |
| !! | AAATATAGACTAACTTGTGT+GGG | - | chr1_1:72052138-72052157 | Msa0041630:intron | 25.0% |
| ! | TATATCCGAATATTGTAATC+TGG | - | chr1_1:72052308-72052327 | Msa0041630:intron | 25.0% |
| ! | AATAGCCAGATTACAATATT+CGG | + | chr1_1:72052316-72052335 | None:intergenic | 25.0% |
| !! | TGTTGAAGTTTGATGATTTA+GGG | - | chr1_1:72052578-72052597 | Msa0041630:intron | 25.0% |
| !! | ATGCTTTTCTTCTCTATATT+TGG | - | chr1_1:72052876-72052895 | Msa0041630:intron | 25.0% |
| !! | AAACAATTTGTTCATTCCTA+TGG | - | chr1_1:72052987-72053006 | Msa0041630:intron | 25.0% |
| ! | ATTTACCTGATTTATAAACC+CGG | + | chr1_1:72053150-72053169 | None:intergenic | 25.0% |
| ! | AATTATAGTTGCTTACTTCT+TGG | - | chr1_1:72053779-72053798 | Msa0041630:intron | 25.0% |
| ! | AAAAATCTGTTCAGATTCAT+AGG | + | chr1_1:72053918-72053937 | None:intergenic | 25.0% |
| ! | TGAAATAAATGAGTGCATTT+AGG | + | chr1_1:72053949-72053968 | None:intergenic | 25.0% |
| ! | ATACTAGAAACTATGAGATT+GGG | + | chr1_1:72054008-72054027 | None:intergenic | 25.0% |
| ! | TATACTAGAAACTATGAGAT+TGG | + | chr1_1:72054009-72054028 | None:intergenic | 25.0% |
| ! | TCTAGTATATCTACACAAAT+AGG | - | chr1_1:72054020-72054039 | Msa0041630:intron | 25.0% |
| CAACATTACATTGTTATGCT+TGG | - | chr1_1:72050244-72050263 | Msa0041630:CDS | 30.0% | |
| ! | AATAGTGGAAACAATGACAA+TGG | + | chr1_1:72050272-72050291 | None:intergenic | 30.0% |
| ACTATTCTTGTTCCTTTGAT+GGG | - | chr1_1:72050286-72050305 | Msa0041630:CDS | 30.0% | |
| !! | GTGTTAATTTGTTGTGTTCT+TGG | - | chr1_1:72050686-72050705 | Msa0041630:intron | 30.0% |
| !! | TTCTTGGTTTCATTTTTCAG+AGG | - | chr1_1:72050702-72050721 | Msa0041630:intron | 30.0% |
| ! | CTTATTGCTTCTTTTGTTCA+AGG | - | chr1_1:72050761-72050780 | Msa0041630:intron | 30.0% |
| ! | TCTTTTGTTCAAGGAATGAT+TGG | - | chr1_1:72050770-72050789 | Msa0041630:intron | 30.0% |
| !!! | CAAGGAATGATTGGATTTTT+TGG | - | chr1_1:72050779-72050798 | Msa0041630:intron | 30.0% |
| !!! | TGATTGGATTTTTTGGATTC+TGG | - | chr1_1:72050786-72050805 | Msa0041630:intron | 30.0% |
| !!! | GATTGGATTTTTTGGATTCT+GGG | - | chr1_1:72050787-72050806 | Msa0041630:intron | 30.0% |
| !!! | ATTGGATTTTTTGGATTCTG+GGG | - | chr1_1:72050788-72050807 | Msa0041630:intron | 30.0% |
| !!! | GATGAAATCAGTTCTAGTTT+TGG | - | chr1_1:72050876-72050895 | Msa0041630:intron | 30.0% |
| GGTAAATAAAGTAACATACC+TGG | + | chr1_1:72051206-72051225 | None:intergenic | 30.0% | |
| AAGATGTTGAATGAGATAGA+GGG | + | chr1_1:72051228-72051247 | None:intergenic | 30.0% | |
| AAAGATGTTGAATGAGATAG+AGG | + | chr1_1:72051229-72051248 | None:intergenic | 30.0% | |
| GTAAATTACAAGGTAAGAGT+TGG | + | chr1_1:72051334-72051353 | None:intergenic | 30.0% | |
| AAAGTAAGAGATTTGAATGG+TGG | - | chr1_1:72051438-72051457 | Msa0041630:intron | 30.0% | |
| !! | TTGATGTTCTTTCCACTTTT+TGG | - | chr1_1:72051525-72051544 | Msa0041630:CDS | 30.0% |
| !! | ACATTGGTTTAACCAAAAAG+TGG | + | chr1_1:72051540-72051559 | None:intergenic | 30.0% |
| ! | CCTCTTGATTTAATCTTTTG+TGG | + | chr1_1:72051577-72051596 | None:intergenic | 30.0% |
| CCACAAAAGATTAAATCAAG+AGG | - | chr1_1:72051574-72051593 | Msa0041630:intron | 30.0% | |
| !!! | ATTTGCTGAAATTTTGACTG+CGG | - | chr1_1:72051642-72051661 | Msa0041630:CDS | 30.0% |
| GACGTAATAGATGATATCTT+AGG | - | chr1_1:72051834-72051853 | Msa0041630:intron | 30.0% | |
| GTAGAGAAAGCTAATTCAAA+TGG | + | chr1_1:72051962-72051981 | None:intergenic | 30.0% | |
| TATCACCAACATTGAAAGTA+GGG | + | chr1_1:72052049-72052068 | None:intergenic | 30.0% | |
| ATATCACCAACATTGAAAGT+AGG | + | chr1_1:72052050-72052069 | None:intergenic | 30.0% | |
| ! | AATATAGACTAACTTGTGTG+GGG | - | chr1_1:72052139-72052158 | Msa0041630:intron | 30.0% |
| CATGATCAATATGACATTGT+GGG | - | chr1_1:72052228-72052247 | Msa0041630:intron | 30.0% | |
| CTGTTACAAGAGATTGAAAA+GGG | + | chr1_1:72052406-72052425 | None:intergenic | 30.0% | |
| ACTGTTACAAGAGATTGAAA+AGG | + | chr1_1:72052407-72052426 | None:intergenic | 30.0% | |
| ! | GTGTTGAAGTTTGATGATTT+AGG | - | chr1_1:72052577-72052596 | Msa0041630:intron | 30.0% |
| ! | AGTTTGATGATTTAGGGTAT+AGG | - | chr1_1:72052584-72052603 | Msa0041630:intron | 30.0% |
| CCTAAGAACTATTTGACAAT+AGG | + | chr1_1:72052688-72052707 | None:intergenic | 30.0% | |
| CCTATTGTCAAATAGTTCTT+AGG | - | chr1_1:72052685-72052704 | Msa0041630:intron | 30.0% | |
| TAGTTCTTAGGCTATATTCT+TGG | - | chr1_1:72052697-72052716 | Msa0041630:intron | 30.0% | |
| TTATTAAGTGTCTTTGACCT+TGG | - | chr1_1:72052723-72052742 | Msa0041630:intron | 30.0% | |
| ! | TTTCCTTTTAGTCAAAATGC+AGG | - | chr1_1:72052795-72052814 | Msa0041630:intron | 30.0% |
| !!! | AATCCTGCATTTTGACTAAA+AGG | + | chr1_1:72052801-72052820 | None:intergenic | 30.0% |
| ATACTCAGAAATTCACAGAA+GGG | + | chr1_1:72052916-72052935 | None:intergenic | 30.0% | |
| AATACTCAGAAATTCACAGA+AGG | + | chr1_1:72052917-72052936 | None:intergenic | 30.0% | |
| TAAATGTGAGAACAATGTTG+TGG | + | chr1_1:72053064-72053083 | None:intergenic | 30.0% | |
| AGATATTCGAGGAAATATTG+TGG | + | chr1_1:72053582-72053601 | None:intergenic | 30.0% | |
| ! | TCTAAGATATATATGTACCG+AGG | + | chr1_1:72053643-72053662 | None:intergenic | 30.0% |
| ATGGTTATACTTATAGCAAG+AGG | + | chr1_1:72053676-72053695 | None:intergenic | 30.0% | |
| CAGATTATTGCAATAGTTGT+AGG | - | chr1_1:72054059-72054078 | Msa0041630:CDS | 30.0% | |
| ! | TTACTGTTGATTGCTGTGTT+AGG | - | chr1_1:72050074-72050093 | Msa0041630:three_prime_UTR | 35.0% |
| TTTATTGCATTTGCAGCTGA+AGG | - | chr1_1:72050205-72050224 | Msa0041630:CDS | 35.0% | |
| TTATTGCATTTGCAGCTGAA+GGG | - | chr1_1:72050206-72050225 | Msa0041630:CDS | 35.0% | |
| CATCAAAGGAACAAGAATAG+TGG | + | chr1_1:72050287-72050306 | None:intergenic | 35.0% | |
| CACTATTCTTGTTCCTTTGA+TGG | - | chr1_1:72050285-72050304 | Msa0041630:CDS | 35.0% | |
| !!! | ATGTTTTGAGGGAAAACTGT+AGG | - | chr1_1:72050390-72050409 | Msa0041630:CDS | 35.0% |
| !! | TCTTATTCCAGCTATTTCTG+TGG | - | chr1_1:72050525-72050544 | Msa0041630:CDS | 35.0% |
| AATGTACAACTACAACAGCA+TGG | + | chr1_1:72050606-72050625 | None:intergenic | 35.0% | |
| AATCCATGAGAGCTATTCAA+GGG | - | chr1_1:72050732-72050751 | Msa0041630:intron | 35.0% | |
| !! | GATTCTGGGGAATTTTTGTA+AGG | - | chr1_1:72050801-72050820 | Msa0041630:intron | 35.0% |
| TTTACTGTGATTCCTGTAGT+TGG | - | chr1_1:72051128-72051147 | Msa0041630:intron | 35.0% | |
| AGATGTTGAATGAGATAGAG+GGG | + | chr1_1:72051227-72051246 | None:intergenic | 35.0% | |
| AGTTCCGTATCCATTTCAAT+GGG | - | chr1_1:72052019-72052038 | Msa0041630:intron | 35.0% | |
| TTCTCTTGTTGCAATTGTAG+AGG | - | chr1_1:72052088-72052107 | Msa0041630:CDS | 35.0% | |
| !!! | GGATCGGTGTTATACATTTT+CGG | - | chr1_1:72052160-72052179 | Msa0041630:intron | 35.0% |
| CCACAATGTCATATTGATCA+TGG | + | chr1_1:72052230-72052249 | None:intergenic | 35.0% | |
| CCATGATCAATATGACATTG+TGG | - | chr1_1:72052227-72052246 | Msa0041630:intron | 35.0% | |
| !! | TCTGGCTATTTCTAAGTAGA+AGG | - | chr1_1:72052326-72052345 | Msa0041630:intron | 35.0% |
| AATCTCTTGTAACAGTCAAC+TGG | - | chr1_1:72052411-72052430 | Msa0041630:CDS | 35.0% | |
| ATCTCTTGTAACAGTCAACT+GGG | - | chr1_1:72052412-72052431 | Msa0041630:CDS | 35.0% | |
| CAACAAAATGTACACTGATG+CGG | + | chr1_1:72052651-72052670 | None:intergenic | 35.0% | |
| TAGTCAAAATGCAGGATTGT+TGG | - | chr1_1:72052803-72052822 | Msa0041630:intron | 35.0% | |
| AGTCAAAATGCAGGATTGTT+GGG | - | chr1_1:72052804-72052823 | Msa0041630:intron | 35.0% | |
| AGAGTCATTCAAATATCAGC+TGG | - | chr1_1:72052849-72052868 | Msa0041630:intron | 35.0% | |
| GCCTAATTACTTACTGTATC+CGG | - | chr1_1:72053128-72053147 | Msa0041630:CDS | 35.0% | |
| CCTAATTACTTACTGTATCC+GGG | - | chr1_1:72053129-72053148 | Msa0041630:CDS | 35.0% | |
| TGTATCCGGGTTTATAAATC+AGG | - | chr1_1:72053142-72053161 | Msa0041630:CDS | 35.0% | |
| TGCAAAGAGAACACAATACA+CGG | + | chr1_1:72053215-72053234 | None:intergenic | 35.0% | |
| TGTGTTCTCTTTGCATATGT+CGG | - | chr1_1:72053220-72053239 | Msa0041630:intron | 35.0% | |
| TACAGATCAATGTTCATCGT+TGG | - | chr1_1:72053528-72053547 | Msa0041630:intron | 35.0% | |
| AAGATATATATGTACCGAGG+TGG | + | chr1_1:72053640-72053659 | None:intergenic | 35.0% | |
| ACTATAATTGCAACAGTTGC+TGG | + | chr1_1:72053768-72053787 | None:intergenic | 35.0% | |
| AAAATTCAGGACCTTCAATC+AGG | - | chr1_1:72053863-72053882 | Msa0041630:CDS | 35.0% | |
| ACTTCTGATATCCTGATTGA+AGG | + | chr1_1:72053877-72053896 | None:intergenic | 35.0% | |
| ATCAGAAGTGATGAGTTCTA+TGG | - | chr1_1:72053888-72053907 | Msa0041630:CDS | 35.0% | |
| ! | TTTTCAACCTCATCCTGTCA+AGG | - | chr1_1:72050045-72050064 | Msa0041630:three_prime_UTR | 40.0% |
| ACAGTAAGTTGTTCCTTGAC+AGG | + | chr1_1:72050061-72050080 | None:intergenic | 40.0% | |
| ! | CAGCTGAAGGGATTTTTCTT+GGG | - | chr1_1:72050218-72050237 | Msa0041630:CDS | 40.0% |
| ATTCTTGTTCCTTTGATGGG+TGG | - | chr1_1:72050289-72050308 | Msa0041630:CDS | 40.0% | |
| !! | TTTTGAGGGAAAACTGTAGG+TGG | - | chr1_1:72050393-72050412 | Msa0041630:CDS | 40.0% |
| AAAGATGCTCCTATAACCAC+TGG | + | chr1_1:72050499-72050518 | None:intergenic | 40.0% | |
| TGTATTCCTTAATCCTCGTC+AGG | - | chr1_1:72050567-72050586 | Msa0041630:CDS | 40.0% | |
| CAATCCATGAGAGCTATTCA+AGG | - | chr1_1:72050731-72050750 | Msa0041630:intron | 40.0% | |
| ATCCATGAGAGCTATTCAAG+GGG | - | chr1_1:72050733-72050752 | Msa0041630:intron | 40.0% | |
| TAGGCCAGTTAGAGTTACAA+GGG | + | chr1_1:72050982-72051001 | None:intergenic | 40.0% | |
| TCTTTGTGATAGGGTTTCCA+AGG | - | chr1_1:72051006-72051025 | Msa0041630:intron | 40.0% | |
| CTTTGTGATAGGGTTTCCAA+GGG | - | chr1_1:72051007-72051026 | Msa0041630:intron | 40.0% | |
| TTGGCAGATTGTGTTGAGAT+TGG | - | chr1_1:72051147-72051166 | Msa0041630:intron | 40.0% | |
| !! | TCTTCCTGCATTGGTTATTC+TGG | - | chr1_1:72051170-72051189 | Msa0041630:intron | 40.0% |
| ATGACCAGAATAACCAATGC+AGG | + | chr1_1:72051177-72051196 | None:intergenic | 40.0% | |
| TAAAGTAACATACCTGGGAG+AGG | + | chr1_1:72051200-72051219 | None:intergenic | 40.0% | |
| TCGTGACTATGACTGCAAAT+CGG | + | chr1_1:72051606-72051625 | None:intergenic | 40.0% | |
| TTTGCAGTCATAGTCACGAT+TGG | - | chr1_1:72051607-72051626 | Msa0041630:intron | 40.0% | |
| TAGTCACGATTGGAATTGCA+TGG | - | chr1_1:72051617-72051636 | Msa0041630:intron | 40.0% | |
| AGTCACGATTGGAATTGCAT+GGG | - | chr1_1:72051618-72051637 | Msa0041630:intron | 40.0% | |
| CAACTGAATTGAGTACTCAG+TGG | + | chr1_1:72051688-72051707 | None:intergenic | 40.0% | |
| AGCTTTCTGTACATCTATGC+AGG | - | chr1_1:72051991-72052010 | Msa0041630:intron | 40.0% | |
| GAGTTCCGTATCCATTTCAA+TGG | - | chr1_1:72052018-72052037 | Msa0041630:intron | 40.0% | |
| GTTCCGTATCCATTTCAATG+GGG | - | chr1_1:72052020-72052039 | Msa0041630:intron | 40.0% | |
| TTCCGTATCCATTTCAATGG+GGG | - | chr1_1:72052021-72052040 | Msa0041630:intron | 40.0% | |
| TTCATCGCTGCATCAAGATT+TGG | - | chr1_1:72052438-72052457 | Msa0041630:CDS | 40.0% | |
| GACAATAGGTAGTGAGAAGA+GGG | + | chr1_1:72052674-72052693 | None:intergenic | 40.0% | |
| TGACAATAGGTAGTGAGAAG+AGG | + | chr1_1:72052675-72052694 | None:intergenic | 40.0% | |
| AGATATTCCAACGAAGCCAT+AGG | + | chr1_1:72053006-72053025 | None:intergenic | 40.0% | |
| CCCGGATACAGTAAGTAATT+AGG | + | chr1_1:72053132-72053151 | None:intergenic | 40.0% | |
| CAATACACGGCTGCTATTAT+TGG | + | chr1_1:72053202-72053221 | None:intergenic | 40.0% | |
| AGTTCTCGCATACCAACATA+AGG | + | chr1_1:72053300-72053319 | None:intergenic | 40.0% | |
| !!! | GTTGGCTTTTCTCTCTTCAT+AGG | - | chr1_1:72053546-72053565 | Msa0041630:intron | 40.0% |
| CAGATAGTGTGAGATATTCG+AGG | + | chr1_1:72053593-72053612 | None:intergenic | 40.0% | |
| CTCGAATATCTCACACTATC+TGG | - | chr1_1:72053591-72053610 | Msa0041630:CDS | 40.0% | |
| TATCTCACACTATCTGGACA+TGG | - | chr1_1:72053597-72053616 | Msa0041630:CDS | 40.0% | |
| ATGAGTGCATTTAGGCTGAA+GGG | + | chr1_1:72053941-72053960 | None:intergenic | 40.0% | |
| AATGAGTGCATTTAGGCTGA+AGG | + | chr1_1:72053942-72053961 | None:intergenic | 40.0% | |
| AGTTGTTCCTTGACAGGATG+AGG | + | chr1_1:72050055-72050074 | None:intergenic | 45.0% | |
| ! | ATGGGTTACTTACGCCATGA+AGG | + | chr1_1:72050106-72050125 | None:intergenic | 45.0% |
| ! | GCAGCTGAAGGGATTTTTCT+TGG | - | chr1_1:72050217-72050236 | Msa0041630:CDS | 45.0% |
| !!! | CAGACACTGCTTTTTGTTGC+TGG | - | chr1_1:72050433-72050452 | Msa0041630:intron | 45.0% |
| TCAACACTCTGTTGCAGACA+TGG | - | chr1_1:72050458-72050477 | Msa0041630:intron | 45.0% | |
| ACTAGGCTTCCAGTGGTTAT+AGG | - | chr1_1:72050487-72050506 | Msa0041630:intron | 45.0% | |
| GAGAATGCCACAGAAATAGC+TGG | + | chr1_1:72050535-72050554 | None:intergenic | 45.0% | |
| GTTCCCCTTGTAACTCTAAC+TGG | - | chr1_1:72050975-72050994 | Msa0041630:intron | 45.0% | |
| AGGCCAGTTAGAGTTACAAG+GGG | + | chr1_1:72050981-72051000 | None:intergenic | 45.0% | |
| CTAGGCCAGTTAGAGTTACA+AGG | + | chr1_1:72050983-72051002 | None:intergenic | 45.0% | |
| ! | CTTGTAACTCTAACTGGCCT+AGG | - | chr1_1:72050981-72051000 | Msa0041630:intron | 45.0% |
| GCCTAGGACTCTTTGTGATA+GGG | - | chr1_1:72050997-72051016 | Msa0041630:intron | 45.0% | |
| ACCCTATCACAAAGAGTCCT+AGG | + | chr1_1:72051001-72051020 | None:intergenic | 45.0% | |
| GAGAGAAATGTGCTTACCCT+TGG | + | chr1_1:72051026-72051045 | None:intergenic | 45.0% | |
| CAACACAATCTGCCAACTAC+AGG | + | chr1_1:72051143-72051162 | None:intergenic | 45.0% | |
| !! | TGAGATTGGTCTTCCTGCAT+TGG | - | chr1_1:72051161-72051180 | Msa0041630:intron | 45.0% |
| GGAATGTACTGCAACGACAT+TGG | + | chr1_1:72051556-72051575 | None:intergenic | 45.0% | |
| GTCACGATTGGAATTGCATG+GGG | - | chr1_1:72051619-72051638 | Msa0041630:intron | 45.0% | |
| TTAACCCAGATCGGTCAGTA+CGG | + | chr1_1:72051711-72051730 | None:intergenic | 45.0% | |
| CGGCAGTAATTAACCCAGAT+CGG | + | chr1_1:72051720-72051739 | None:intergenic | 45.0% | |
| ! | AGGCTCCAAAGCATCAAACT+AGG | - | chr1_1:72051854-72051873 | Msa0041630:intron | 45.0% |
| CTCTGCCTAGTTTGATGCTT+TGG | + | chr1_1:72051862-72051881 | None:intergenic | 45.0% | |
| TTGCACCTCTGACTTCTTTG+TGG | - | chr1_1:72051929-72051948 | Msa0041630:intron | 45.0% | |
| ACATGCCACAAAGAAGTCAG+AGG | + | chr1_1:72051937-72051956 | None:intergenic | 45.0% | |
| CTCCCCCATTGAAATGGATA+CGG | + | chr1_1:72052026-72052045 | None:intergenic | 45.0% | |
| ! | AGACTAACTTGTGTGGGGAT+CGG | - | chr1_1:72052144-72052163 | Msa0041630:intron | 45.0% |
| ATCGCTGCATCAAGATTTGG+CGG | - | chr1_1:72052441-72052460 | Msa0041630:CDS | 45.0% | |
| TTAGGGTATAGGCACTCTTC+TGG | - | chr1_1:72052595-72052614 | Msa0041630:intron | 45.0% | |
| ! | ACTCTTCTGGATGCCTTGTT+TGG | - | chr1_1:72052608-72052627 | Msa0041630:intron | 45.0% |
| CAAAATGTACACTGATGCGG+TGG | + | chr1_1:72052648-72052667 | None:intergenic | 45.0% | |
| GTTCATTCCTATGGCTTCGT+TGG | - | chr1_1:72052996-72053015 | Msa0041630:intron | 45.0% | |
| ACGGCTGCTATTATTGGCAA+TGG | + | chr1_1:72053196-72053215 | None:intergenic | 45.0% | |
| GACACTGGTGGGAAAAATTC+AGG | - | chr1_1:72053850-72053869 | Msa0041630:CDS | 45.0% | |
| !!! | CATTTTTTTATATATTTTTA+TGG | - | chr1_1:72051045-72051064 | Msa0041630:intron | 5.0% |
| GTGTTAGGAGCTCACCTTCA+TGG | - | chr1_1:72050089-72050108 | Msa0041630:three_prime_UTR | 50.0% | |
| ! | CTTGTTCCTTTGATGGGTGG+TGG | - | chr1_1:72050292-72050311 | Msa0041630:CDS | 50.0% |
| ACATTGCCACCACCCATCAA+AGG | + | chr1_1:72050301-72050320 | None:intergenic | 50.0% | |
| ACTCTGTTGCAGACATGGCT+TGG | - | chr1_1:72050463-72050482 | Msa0041630:intron | 50.0% | |
| ! | TGCAGACATGGCTTGGAACT+AGG | - | chr1_1:72050470-72050489 | Msa0041630:intron | 50.0% |
| GACAGACCTGACGAGGATTA+AGG | + | chr1_1:72050576-72050595 | None:intergenic | 50.0% | |
| TTACACAGACAGACCTGACG+AGG | + | chr1_1:72050583-72050602 | None:intergenic | 50.0% | |
| TGCCCCTTGAATAGCTCTCA+TGG | + | chr1_1:72050738-72050757 | None:intergenic | 50.0% | |
| GGCCTAGGACTCTTTGTGAT+AGG | - | chr1_1:72050996-72051015 | Msa0041630:intron | 50.0% | |
| TATTCTGGTCATCCTCTCCC+AGG | - | chr1_1:72051185-72051204 | Msa0041630:intron | 50.0% | |
| !!! | GCTGAAATTTTGACTGCGGC+TGG | - | chr1_1:72051646-72051665 | Msa0041630:CDS | 50.0% |
| GGTTAATTACTGCCGCTCCA+TGG | - | chr1_1:72051725-72051744 | Msa0041630:intron | 50.0% | |
| CAAGAGTCCAAGACTGACCA+TGG | + | chr1_1:72051745-72051764 | None:intergenic | 50.0% | |
| CATGGTCAGTCTTGGACTCT+TGG | - | chr1_1:72051743-72051762 | Msa0041630:intron | 50.0% | |
| ! | GTCTTGGACTCTTGGTAGCT+TGG | - | chr1_1:72051751-72051770 | Msa0041630:intron | 50.0% |
| GGGAGCCCTACTTTCAATGT+TGG | - | chr1_1:72052041-72052060 | Msa0041630:CDS | 50.0% | |
| TTGTTGGGTCTAACACGCGT+TGG | - | chr1_1:72052819-72052838 | Msa0041630:intron | 50.0% | |
| TGTTGGGTCTAACACGCGTT+GGG | - | chr1_1:72052820-72052839 | Msa0041630:intron | 50.0% | |
| AGGTGGATCCAGTATGAGCA+GGG | + | chr1_1:72053623-72053642 | None:intergenic | 50.0% | |
| TGCTCATACTGGATCCACCT+CGG | - | chr1_1:72053623-72053642 | Msa0041630:CDS | 50.0% | |
| ATGGCAGCTGGTGAAAGTGG+TGG | - | chr1_1:72050001-72050020 | Msa0041630:three_prime_UTR | 55.0% | |
| GCTTGGAACTAGGCTTCCAG+TGG | - | chr1_1:72050480-72050499 | Msa0041630:intron | 55.0% | |
| ! | CAAGGGGAACAGCACTGAGA+GGG | + | chr1_1:72050965-72050984 | None:intergenic | 55.0% |
| ! | ACAAGGGGAACAGCACTGAG+AGG | + | chr1_1:72050966-72050985 | None:intergenic | 55.0% |
| ! | AGTTGCCGTACTGACCGATC+TGG | - | chr1_1:72051703-72051722 | Msa0041630:intron | 55.0% |
| ! | GTTGCCGTACTGACCGATCT+GGG | - | chr1_1:72051704-72051723 | Msa0041630:intron | 55.0% |
| GTCCAAGACTGACCATGGAG+CGG | + | chr1_1:72051740-72051759 | None:intergenic | 55.0% | |
| GTAGGGCTCCCCCATTGAAA+TGG | + | chr1_1:72052032-72052051 | None:intergenic | 55.0% | |
| CCACCTTCTGTACTTAGCCG+CGG | - | chr1_1:72052477-72052496 | Msa0041630:CDS | 55.0% | |
| ACACCGCGGCTAAGTACAGA+AGG | + | chr1_1:72052483-72052502 | None:intergenic | 55.0% | |
| TCTGTACTTAGCCGCGGTGT+TGG | - | chr1_1:72052483-72052502 | Msa0041630:CDS | 55.0% | |
| TCCAGTTGCTGCGCCAAACA+AGG | + | chr1_1:72052624-72052643 | None:intergenic | 55.0% | |
| CTGTGATGAGCAGCTTCAGC+TGG | - | chr1_1:72053471-72053490 | Msa0041630:intron | 55.0% | |
| TGAGCAGCTTCAGCTGGACT+TGG | - | chr1_1:72053477-72053496 | Msa0041630:intron | 55.0% | |
| GAGGTGGATCCAGTATGAGC+AGG | + | chr1_1:72053624-72053643 | None:intergenic | 55.0% | |
| GGCGTGTTCACGACTCATAG+TGG | + | chr1_1:72053808-72053827 | None:intergenic | 55.0% | |
| CCTCAACTCACCGTGACAGT+GGG | - | chr1_1:72053826-72053845 | Msa0041630:CDS | 55.0% | |
| ACCAGTGTCTCCCACTGTCA+CGG | + | chr1_1:72053839-72053858 | None:intergenic | 55.0% | |
| TGACAGTGGGAGACACTGGT+GGG | - | chr1_1:72053839-72053858 | Msa0041630:CDS | 55.0% | |
| GCAGCTGGTGAAAGTGGTGG+TGG | - | chr1_1:72050004-72050023 | Msa0041630:three_prime_UTR | 60.0% | |
| !! | GCTGGTGAAAGTGGTGGTGG+TGG | - | chr1_1:72050007-72050026 | Msa0041630:three_prime_UTR | 60.0% |
| !! | GGTGAAAGTGGTGGTGGTGG+TGG | - | chr1_1:72050010-72050029 | Msa0041630:three_prime_UTR | 60.0% |
| TGCCGCTCCATGGTCAGTCT+TGG | - | chr1_1:72051735-72051754 | Msa0041630:intron | 60.0% | |
| CCGCGGCTAAGTACAGAAGG+TGG | + | chr1_1:72052480-72052499 | None:intergenic | 60.0% | |
| !! | TACTTAGCCGCGGTGTTGGC+TGG | - | chr1_1:72052487-72052506 | Msa0041630:CDS | 60.0% |
| !! | GCCTTGTTTGGCGCAGCAAC+TGG | - | chr1_1:72052620-72052639 | Msa0041630:intron | 60.0% |
| GGACATGGCCCTGCTCATAC+TGG | - | chr1_1:72053612-72053631 | Msa0041630:CDS | 60.0% | |
| GCCTCAACTCACCGTGACAG+TGG | - | chr1_1:72053825-72053844 | Msa0041630:intron | 60.0% | |
| CCCACTGTCACGGTGAGTTG+AGG | + | chr1_1:72053829-72053848 | None:intergenic | 60.0% | |
| ACCGTGACAGTGGGAGACAC+TGG | - | chr1_1:72053835-72053854 | Msa0041630:CDS | 60.0% | |
| GTGACAGTGGGAGACACTGG+TGG | - | chr1_1:72053838-72053857 | Msa0041630:CDS | 60.0% | |
| GTACCAGCCAGCCAACACCG+CGG | + | chr1_1:72052497-72052516 | None:intergenic | 65.0% | |
| !! | TAGCCGCGGTGTTGGCTGGC+TGG | - | chr1_1:72052491-72052510 | Msa0041630:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72050001 | 72054143 | 72050001 | ID=Msa0041630;Name=Msa0041630 |
| chr1_1 | mRNA | 72050001 | 72054143 | 72050001 | ID=Msa0041630-mRNA-1;Parent=Msa0041630;Name=Msa0041630-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.84|0.71|1|1|1|14|193|534 |
| chr1_1 | exon | 72050001 | 72050412 | 72050001 | ID=Msa0041630-mRNA-1:exon:23937;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72050500 | 72050660 | 72050500 | ID=Msa0041630-mRNA-1:exon:23936;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72050903 | 72050980 | 72050903 | ID=Msa0041630-mRNA-1:exon:23935;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72051247 | 72051338 | 72051247 | ID=Msa0041630-mRNA-1:exon:23934;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72051478 | 72051545 | 72051478 | ID=Msa0041630-mRNA-1:exon:23933;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72051632 | 72051718 | 72051632 | ID=Msa0041630-mRNA-1:exon:23932;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72052035 | 72052131 | 72052035 | ID=Msa0041630-mRNA-1:exon:23931;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72052398 | 72052576 | 72052398 | ID=Msa0041630-mRNA-1:exon:23930;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72052938 | 72052997 | 72052938 | ID=Msa0041630-mRNA-1:exon:23929;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72053116 | 72053191 | 72053116 | ID=Msa0041630-mRNA-1:exon:23928;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72053322 | 72053422 | 72053322 | ID=Msa0041630-mRNA-1:exon:23927;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72053556 | 72053732 | 72053556 | ID=Msa0041630-mRNA-1:exon:23926;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72053826 | 72053923 | 72053826 | ID=Msa0041630-mRNA-1:exon:23925;Parent=Msa0041630-mRNA-1 |
| chr1_1 | exon | 72054032 | 72054143 | 72054032 | ID=Msa0041630-mRNA-1:exon:23924;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72054032 | 72054143 | 72054032 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72053826 | 72053923 | 72053826 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72053556 | 72053732 | 72053556 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72053322 | 72053422 | 72053322 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72053116 | 72053191 | 72053116 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72052938 | 72052997 | 72052938 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72052398 | 72052576 | 72052398 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72052035 | 72052131 | 72052035 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72051632 | 72051718 | 72051632 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72051478 | 72051545 | 72051478 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72051247 | 72051338 | 72051247 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72050903 | 72050980 | 72050903 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72050500 | 72050660 | 72050500 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | CDS | 72050194 | 72050412 | 72050194 | ID=Msa0041630-mRNA-1:cds;Parent=Msa0041630-mRNA-1 |
| chr1_1 | three_prime_UTR | 72050001 | 72050193 | 72050001 | ID=Msa0041630-mRNA-1:three_prime_utr;Parent=Msa0041630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
