Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740600 | XP_024639354.1 | 95.397 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 2.56e-167 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740600 | sp|Q9ZVE0|ORN_ARATH | 60.593 | 236 | 78 | 4 | 1 | 236 | 1 | 221 | 2.55e-101 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740600 | A0A396HVX4 | 95.397 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 1.22e-167 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0740600 | 0.810916 | 9.083811e-51 | -8.615850e-47 |
| Msa0056270 | Msa0740600 | 0.804891 | 1.737205e-49 | -8.615850e-47 |
| Msa0609000 | Msa0740600 | 0.817450 | 3.276327e-52 | -8.615850e-47 |
| Msa0633570 | Msa0740600 | 0.804435 | 2.163219e-49 | -8.615850e-47 |
| Msa0659990 | Msa0740600 | 0.807907 | 4.017764e-50 | -8.615850e-47 |
| Msa0740600 | Msa0781270 | 0.807256 | 5.524390e-50 | -8.615850e-47 |
| Msa0740600 | Msa0858440 | 0.800724 | 1.259926e-48 | -8.615850e-47 |
| Msa0740600 | Msa0963020 | 0.809590 | 1.755077e-50 | -8.615850e-47 |
| Msa0740600 | Msa1017510 | 0.806678 | 7.319034e-50 | -8.615850e-47 |
| Msa0740600 | Msa1025940 | 0.809548 | 1.791685e-50 | -8.615850e-47 |
| Msa0550570 | Msa0740600 | 0.809673 | 1.684774e-50 | -8.615850e-47 |
| Msa0579770 | Msa0740600 | 0.806640 | 7.456927e-50 | -8.615850e-47 |
| Msa0593700 | Msa0740600 | 0.802439 | 5.608500e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740600 | MtrunA17_Chr5g0440971 | 95.397 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 2.35e-171 | 471 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740600 | AT2G26970.1 | 60.593 | 236 | 78 | 4 | 1 | 236 | 1 | 221 | 2.59e-102 | 296 |
| Msa0740600 | AT2G26970.2 | 60.169 | 236 | 75 | 4 | 1 | 236 | 1 | 217 | 1.30e-101 | 294 |
Find 67 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTCGGGTCATGGGTTT+TGG | 0.160133 | 5_1:-59619758 | None:intergenic |
| GCAGAAATACATGCCAAAAT+TGG | 0.219729 | 5_1:+59623451 | Msa0740600:intron |
| GAGAAGATCCCCGCCAATTT+TGG | 0.231562 | 5_1:-59623464 | None:intergenic |
| ATCCATATTTGTCTGATTAC+AGG | 0.249105 | 5_1:+59621224 | Msa0740600:CDS |
| CAACCTCCTTCTCTTCCTTC+TGG | 0.262802 | 5_1:+59619975 | Msa0740600:CDS |
| GGTTGGGTTGGGTCGGGTCA+TGG | 0.285206 | 5_1:-59619765 | None:intergenic |
| CGTTATCATTTCTTGACCTT+TGG | 0.318803 | 5_1:-59623896 | None:intergenic |
| GGAGATTGCTTGTATAATTA+CGG | 0.329627 | 5_1:+59621398 | Msa0740600:CDS |
| AAAGTGGTGATGGGTGGGTT+GGG | 0.335987 | 5_1:-59619781 | None:intergenic |
| TATTGAAGTGGATAGAATTC+TGG | 0.339978 | 5_1:+59621377 | Msa0740600:CDS |
| TGGTGATGGGTGGGTTGGGT+TGG | 0.346515 | 5_1:-59619777 | None:intergenic |
| ATTACAGGTTACCTCTTGTC+TGG | 0.356384 | 5_1:+59621239 | Msa0740600:CDS |
| AATATATACCTCCACCGATT+TGG | 0.364407 | 5_1:-59621433 | None:intergenic |
| GGTGATGGGTGGGTTGGGTT+GGG | 0.368520 | 5_1:-59619776 | None:intergenic |
| GAATTCGTTAAGAAACATAT+TGG | 0.379765 | 5_1:+59623158 | Msa0740600:CDS |
| GTTTGATGTATGACCAAATC+AGG | 0.394324 | 5_1:-59622182 | None:intergenic |
| AGGAAGAGAAGGAGGTTGAA+TGG | 0.397608 | 5_1:-59619970 | None:intergenic |
| TGAAAGAGAAGCTGAAGAAC+AGG | 0.404389 | 5_1:+59622427 | Msa0740600:CDS |
| GTTGGGTTGGGTCGGGTCAT+GGG | 0.404911 | 5_1:-59619764 | None:intergenic |
| ATGGGTGGGTTGGGTTGGGT+CGG | 0.405935 | 5_1:-59619772 | None:intergenic |
| ATCCTAAATATAAAATTTGT+CGG | 0.408088 | 5_1:+59619723 | Msa0740600:five_prime_UTR |
| AACCTGTAATCAGACAAATA+TGG | 0.412327 | 5_1:-59621226 | None:intergenic |
| AAAAGTGGTGATGGGTGGGT+TGG | 0.427048 | 5_1:-59619782 | None:intergenic |
| TGGGTGGGTTGGGTTGGGTC+GGG | 0.429933 | 5_1:-59619771 | None:intergenic |
| TGCATTCGTTGGTATCCTAA+AGG | 0.453245 | 5_1:+59623524 | Msa0740600:CDS |
| TCTCAGCTCTTTGCATTCGT+TGG | 0.454912 | 5_1:+59623513 | Msa0740600:CDS |
| TCCTAAATATAAAATTTGTC+GGG | 0.462721 | 5_1:+59619724 | Msa0740600:five_prime_UTR |
| CTCTTTCAAGTATTCCACTT+TGG | 0.465585 | 5_1:-59619866 | None:intergenic |
| CTCAGAGTCAAAAGTGGTGA+TGG | 0.474174 | 5_1:-59619791 | None:intergenic |
| AAATACATGCCAAAATTGGC+GGG | 0.507770 | 5_1:+59623455 | Msa0740600:CDS |
| GGATGGAAACTTAACCAAAT+CGG | 0.511103 | 5_1:+59621419 | Msa0740600:CDS |
| GGCAGGAAATTCGATATATG+TGG | 0.518560 | 5_1:+59623202 | Msa0740600:CDS |
| AATATCAAGATCTATTTGCT+AGG | 0.522208 | 5_1:-59623984 | None:intergenic |
| AGTGGTGGAGAGAAAGCTAA+TGG | 0.523074 | 5_1:+59621160 | Msa0740600:CDS |
| GAAATACATGCCAAAATTGG+CGG | 0.525273 | 5_1:+59623454 | Msa0740600:intron |
| TGTGGATTTACAATATATGA+AGG | 0.536829 | 5_1:+59623220 | Msa0740600:CDS |
| TAAGGAGTGCCTTGACAGGA+TGG | 0.539187 | 5_1:+59622205 | Msa0740600:CDS |
| AGGTACTTACAAACCTCTCT+TGG | 0.539546 | 5_1:+59623181 | Msa0740600:CDS |
| TTTCTTGGTGCAGGTAGTGG+TGG | 0.540722 | 5_1:+59621145 | Msa0740600:intron |
| AAACTAAGGAGTGCCTTGAC+AGG | 0.541640 | 5_1:+59622201 | Msa0740600:CDS |
| CACTCACTCAGAGTCAAAAG+TGG | 0.542326 | 5_1:-59619797 | None:intergenic |
| ACCTCTTGTCTGGATTGACT+TGG | 0.542563 | 5_1:+59621249 | Msa0740600:CDS |
| TTTGGTCATACATCAAACTA+AGG | 0.543284 | 5_1:+59622187 | Msa0740600:CDS |
| GGCGGGGATCTTCTCTCATG+TGG | 0.543683 | 5_1:+59623472 | Msa0740600:CDS |
| GAAAAGAAACTGCGCCAAAG+TGG | 0.544844 | 5_1:+59619852 | Msa0740600:five_prime_UTR |
| GCCTTGACAGGATGGGAGAA+TGG | 0.548650 | 5_1:+59622213 | Msa0740600:CDS |
| ATTGCTTGTATAATTACGGA+TGG | 0.553379 | 5_1:+59621402 | Msa0740600:CDS |
| ACTTACAAACCTCTCTTGGC+AGG | 0.564752 | 5_1:+59623185 | Msa0740600:CDS |
| TGGATTGACTTGGAAATGAC+TGG | 0.570107 | 5_1:+59621259 | Msa0740600:CDS |
| ACCATACCAGAAGGAAGAGA+AGG | 0.572885 | 5_1:-59619981 | None:intergenic |
| GAGTCAAAAGTGGTGATGGG+TGG | 0.575903 | 5_1:-59619787 | None:intergenic |
| TTCGTTAAGAAACATATTGG+AGG | 0.577409 | 5_1:+59623161 | Msa0740600:CDS |
| ATCGAATTTCCTGCCAAGAG+AGG | 0.584584 | 5_1:-59623194 | None:intergenic |
| AAACTTAACCAAATCGGTGG+AGG | 0.589283 | 5_1:+59621425 | Msa0740600:CDS |
| TCCAAGTCAATCCAGACAAG+AGG | 0.594779 | 5_1:-59621250 | None:intergenic |
| AAAAGTCATCACGCTGCTAG+TGG | 0.595217 | 5_1:+59622239 | Msa0740600:CDS |
| AAGGAGTGCCTTGACAGGAT+GGG | 0.595908 | 5_1:+59622206 | Msa0740600:CDS |
| TCAGAGTCAAAAGTGGTGAT+GGG | 0.602053 | 5_1:-59619790 | None:intergenic |
| ACCATTCTCCCATCCTGTCA+AGG | 0.602681 | 5_1:-59622214 | None:intergenic |
| TGATATTAGAGAAAGTATTG+AGG | 0.606819 | 5_1:+59623841 | Msa0740600:CDS |
| TGCAGGTTTGAATATTGAAG+TGG | 0.613241 | 5_1:+59621365 | Msa0740600:intron |
| TGGAAACTTAACCAAATCGG+TGG | 0.635295 | 5_1:+59621422 | Msa0740600:CDS |
| ATACCAGAAGGAAGAGAAGG+AGG | 0.639758 | 5_1:-59619978 | None:intergenic |
| TGAGGAACTCAAGTACTACA+AGG | 0.639860 | 5_1:+59623859 | Msa0740600:CDS |
| AGTCAAAAGTGGTGATGGGT+GGG | 0.641255 | 5_1:-59619786 | None:intergenic |
| AATACATGCCAAAATTGGCG+GGG | 0.644871 | 5_1:+59623456 | Msa0740600:CDS |
| ATAAACTTGTCATAACAATG+AGG | 0.654254 | 5_1:-59623958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTGAAATAAAAAATTT+AGG | + | chr5_1:59620710-59620729 | Msa0740600:intron | 10.0% |
| !!! | TACATATTTGTATTTATTTT+AGG | + | chr5_1:59622157-59622176 | Msa0740600:intron | 10.0% |
| !!! | ACATATTTGTATTTATTTTA+GGG | + | chr5_1:59622158-59622177 | Msa0740600:intron | 10.0% |
| !! | ATCCTAAATATAAAATTTGT+CGG | + | chr5_1:59619723-59619742 | Msa0740600:five_prime_UTR | 15.0% |
| !!! | TCACTTCTTTTTTTATTATT+AGG | + | chr5_1:59620030-59620049 | Msa0740600:intron | 15.0% |
| !!! | CACTTCTTTTTTTATTATTA+GGG | + | chr5_1:59620031-59620050 | Msa0740600:intron | 15.0% |
| !!! | AAAAATTCCATTTTTTACTT+TGG | + | chr5_1:59620197-59620216 | Msa0740600:intron | 15.0% |
| !! | AAAAGATAGAAAATCTTTAT+TGG | + | chr5_1:59620419-59620438 | Msa0740600:intron | 15.0% |
| !! | TCTACATATCAATTTATTTA+AGG | - | chr5_1:59621787-59621806 | None:intergenic | 15.0% |
| !!! | CTTACATTTCTATTTTAAAT+AGG | + | chr5_1:59622497-59622516 | Msa0740600:intron | 15.0% |
| !!! | CGAAAAAATTATTCATTTTT+AGG | + | chr5_1:59623716-59623735 | Msa0740600:intron | 15.0% |
| !! | TCCTAAATATAAAATTTGTC+GGG | + | chr5_1:59619724-59619743 | Msa0740600:five_prime_UTR | 20.0% |
| !! | ACAAATTAGAAGAAGAAAAA+TGG | + | chr5_1:59619896-59619915 | Msa0740600:exon | 20.0% |
| !! | AAAAATAAAGTAAACCAACA+TGG | - | chr5_1:59620160-59620179 | None:intergenic | 20.0% |
| !! | AGATTTACCAAAGTAAAAAA+TGG | - | chr5_1:59620207-59620226 | None:intergenic | 20.0% |
| !! | AAATTTGATAAAAATGACCA+AGG | + | chr5_1:59620613-59620632 | Msa0740600:intron | 20.0% |
| !! | TCTACATATCAATTTATTGA+AGG | - | chr5_1:59621723-59621742 | None:intergenic | 20.0% |
| !! | GTGATATTATGAAATTTATC+AGG | + | chr5_1:59621956-59621975 | Msa0740600:intron | 20.0% |
| !!! | AGTAAAAAACTGATTTAGTA+TGG | + | chr5_1:59622122-59622141 | Msa0740600:intron | 20.0% |
| !!! | TAATTTGCATTTTGATTTGT+TGG | + | chr5_1:59622286-59622305 | Msa0740600:intron | 20.0% |
| !! | AAAGGGATTTAATAATGTTA+AGG | - | chr5_1:59622316-59622335 | None:intergenic | 20.0% |
| !! | ATTAAGTTCATAAAGAATAC+TGG | + | chr5_1:59622664-59622683 | Msa0740600:intron | 20.0% |
| !!! | ATGTAATTAGCTTTTGATAT+GGG | - | chr5_1:59622854-59622873 | None:intergenic | 20.0% |
| !!! | AATGTAATTAGCTTTTGATA+TGG | - | chr5_1:59622855-59622874 | None:intergenic | 20.0% |
| !!! | TATCTCTTATTGATGATTTT+AGG | - | chr5_1:59622907-59622926 | None:intergenic | 20.0% |
| !! | CAAATCATATTATGAGATAA+TGG | + | chr5_1:59623060-59623079 | Msa0740600:intron | 20.0% |
| !! | ACAAATACACTACTTTATTA+TGG | - | chr5_1:59623257-59623276 | None:intergenic | 20.0% |
| !!! | TCCAGAATTAAATATACTTT+TGG | + | chr5_1:59623664-59623683 | Msa0740600:intron | 20.0% |
| !!! | TCCAAAAGTATATTTAATTC+TGG | - | chr5_1:59623668-59623687 | None:intergenic | 20.0% |
| !!! | TTGATATTGAAGTGTATTTT+TGG | + | chr5_1:59623999-59624018 | Msa0740600:three_prime_UTR | 20.0% |
| !! | ACCCGACAAATTTTATATTT+AGG | - | chr5_1:59619728-59619747 | None:intergenic | 25.0% |
| !!! | AAAGCTTGTTAACTCTTTTT+CGG | + | chr5_1:59619920-59619939 | Msa0740600:CDS | 25.0% |
| ! | ATTGAATAACAGGGATAAAA+GGG | - | chr5_1:59620008-59620027 | None:intergenic | 25.0% |
| !!! | TTTGGTAAATCTTTAAAGCA+CGG | + | chr5_1:59620215-59620234 | Msa0740600:intron | 25.0% |
| !!! | TTTTTCACCTATTTTGATCA+GGG | - | chr5_1:59620459-59620478 | None:intergenic | 25.0% |
| ! | TGATCAAAATAGGTGAAAAA+CGG | + | chr5_1:59620459-59620478 | Msa0740600:intron | 25.0% |
| !!! | GCTTTTTTCAGTTTTGAATT+AGG | + | chr5_1:59620580-59620599 | Msa0740600:intron | 25.0% |
| ! | TTCGATAATTTAAGAACGAA+CGG | - | chr5_1:59620679-59620698 | None:intergenic | 25.0% |
| ! | TCGTTCTTAAATTATCGAAT+TGG | + | chr5_1:59620680-59620699 | Msa0740600:intron | 25.0% |
| ! | AAATTATCGAATTGGAGAAT+AGG | + | chr5_1:59620688-59620707 | Msa0740600:intron | 25.0% |
| ! | AAGTAGTTAAATAGGTGATT+TGG | + | chr5_1:59620772-59620791 | Msa0740600:intron | 25.0% |
| !!! | ATTACCAGTTCTAAAATTTC+TGG | + | chr5_1:59621062-59621081 | Msa0740600:intron | 25.0% |
| !! | TTATTTCCTCTGTTTTCTAT+GGG | + | chr5_1:59621580-59621599 | Msa0740600:intron | 25.0% |
| ! | GAAGGATCATATAAGTTTAA+GGG | - | chr5_1:59621705-59621724 | None:intergenic | 25.0% |
| ! | TGAAGGATCATATAAGTTTA+AGG | - | chr5_1:59621706-59621725 | None:intergenic | 25.0% |
| !!! | TTTTGAATGGTATTGACTAA+TGG | + | chr5_1:59622354-59622373 | Msa0740600:intron | 25.0% |
| !! | TAATGGTTTTCAATGAATGT+AGG | + | chr5_1:59622371-59622390 | Msa0740600:intron | 25.0% |
| !!! | GATGATTTTAGGAAGAAATT+TGG | - | chr5_1:59622896-59622915 | None:intergenic | 25.0% |
| !! | CATATTATGAGATAATGGTT+TGG | + | chr5_1:59623065-59623084 | Msa0740600:intron | 25.0% |
| ! | GAATTCGTTAAGAAACATAT+TGG | + | chr5_1:59623158-59623177 | Msa0740600:CDS | 25.0% |
| ! | TGTGGATTTACAATATATGA+AGG | + | chr5_1:59623220-59623239 | Msa0740600:CDS | 25.0% |
| !! | TACAATATATGAAGGTATAG+AGG | + | chr5_1:59623228-59623247 | Msa0740600:intron | 25.0% |
| !!! | GGTATCATCAGTTTTATTTT+AGG | + | chr5_1:59623343-59623362 | Msa0740600:intron | 25.0% |
| ! | CATTTCAACAAAGGAATAAT+AGG | - | chr5_1:59623369-59623388 | None:intergenic | 25.0% |
| !! | GTATTTAATTTCTCACCTTT+AGG | - | chr5_1:59623542-59623561 | None:intergenic | 25.0% |
| !! | TTTTTCGTAAGAACTACTAT+CGG | - | chr5_1:59623703-59623722 | None:intergenic | 25.0% |
| ! | AAGTACCTTCAAAACAAAAA+AGG | + | chr5_1:59623804-59623823 | Msa0740600:CDS | 25.0% |
| !!! | TGATATTAGAGAAAGTATTG+AGG | + | chr5_1:59623841-59623860 | Msa0740600:CDS | 25.0% |
| ! | ATAAACTTGTCATAACAATG+AGG | - | chr5_1:59623961-59623980 | None:intergenic | 25.0% |
| ! | AATATCAAGATCTATTTGCT+AGG | - | chr5_1:59623987-59624006 | None:intergenic | 25.0% |
| !!! | CATAAGCAAAACACTTTTTT+GGG | - | chr5_1:59624127-59624146 | None:intergenic | 25.0% |
| GATTGAATAACAGGGATAAA+AGG | - | chr5_1:59620009-59620028 | None:intergenic | 30.0% | |
| GAAGTGAAGATTGAATAACA+GGG | - | chr5_1:59620017-59620036 | None:intergenic | 30.0% | |
| AGAAGTGAAGATTGAATAAC+AGG | - | chr5_1:59620018-59620037 | None:intergenic | 30.0% | |
| ! | TATCTTTTCTACAACCTAGT+GGG | - | chr5_1:59620407-59620426 | None:intergenic | 30.0% |
| !!! | GTTTTTCACCTATTTTGATC+AGG | - | chr5_1:59620460-59620479 | None:intergenic | 30.0% |
| ! | ATAAAAATGACCAAGGCATT+AGG | + | chr5_1:59620620-59620639 | Msa0740600:intron | 30.0% |
| TCGATAATTTAAGAACGAAC+GGG | - | chr5_1:59620678-59620697 | None:intergenic | 30.0% | |
| TTAACTACTTGTAGCATGTT+TGG | - | chr5_1:59620762-59620781 | None:intergenic | 30.0% | |
| CATGCTACAAGTAGTTAAAT+AGG | + | chr5_1:59620764-59620783 | Msa0740600:intron | 30.0% | |
| TGAATCTGATTTCAGTTTCT+GGG | + | chr5_1:59620863-59620882 | Msa0740600:intron | 30.0% | |
| CATAAGCATAGGTAAACATA+TGG | - | chr5_1:59621007-59621026 | None:intergenic | 30.0% | |
| CATAAAAATGACAAGCAAAG+AGG | - | chr5_1:59621035-59621054 | None:intergenic | 30.0% | |
| !! | TCTTGTTTCTCATTTTTCAC+TGG | - | chr5_1:59621196-59621215 | None:intergenic | 30.0% |
| ATCCATATTTGTCTGATTAC+AGG | + | chr5_1:59621224-59621243 | Msa0740600:CDS | 30.0% | |
| AACCTGTAATCAGACAAATA+TGG | - | chr5_1:59621229-59621248 | None:intergenic | 30.0% | |
| ! | TAAACATTTTGTGTGTTTGC+AGG | + | chr5_1:59621348-59621367 | Msa0740600:intron | 30.0% |
| TATTGAAGTGGATAGAATTC+TGG | + | chr5_1:59621377-59621396 | Msa0740600:CDS | 30.0% | |
| GGAGATTGCTTGTATAATTA+CGG | + | chr5_1:59621398-59621417 | Msa0740600:CDS | 30.0% | |
| ATTGCTTGTATAATTACGGA+TGG | + | chr5_1:59621402-59621421 | Msa0740600:CDS | 30.0% | |
| !!! | GCTTGCTGTTTTTTATTTAG+AGG | + | chr5_1:59621478-59621497 | Msa0740600:intron | 30.0% |
| ATCTCATTCAAAATATCCTG+AGG | - | chr5_1:59621516-59621535 | None:intergenic | 30.0% | |
| AGAGGAAATAAGCCTAAAAA+GGG | - | chr5_1:59621571-59621590 | None:intergenic | 30.0% | |
| ! | CTTATTTCCTCTGTTTTCTA+TGG | + | chr5_1:59621579-59621598 | Msa0740600:intron | 30.0% |
| ! | TTTTAAACTCTACTAGCACT+TGG | - | chr5_1:59621680-59621699 | None:intergenic | 30.0% |
| ACTTATTAGTTGTTGCAACA+TGG | + | chr5_1:59621754-59621773 | Msa0740600:intron | 30.0% | |
| !!! | TTTATTTTAGGGTCCTGATT+TGG | + | chr5_1:59622169-59622188 | Msa0740600:intron | 30.0% |
| TTTGGTCATACATCAAACTA+AGG | + | chr5_1:59622187-59622206 | Msa0740600:CDS | 30.0% | |
| !!! | TTAAATCCCTTTTTTTCCTG+TGG | + | chr5_1:59622324-59622343 | Msa0740600:intron | 30.0% |
| TCAATTCCACAGGAAAAAAA+GGG | - | chr5_1:59622333-59622352 | None:intergenic | 30.0% | |
| TTCAATTCCACAGGAAAAAA+AGG | - | chr5_1:59622334-59622353 | None:intergenic | 30.0% | |
| CATTCAAAATTCAATTCCAC+AGG | - | chr5_1:59622343-59622362 | None:intergenic | 30.0% | |
| ! | CTGTGGAATTGAATTTTGAA+TGG | + | chr5_1:59622341-59622360 | Msa0740600:intron | 30.0% |
| GAATGTAGGCTTAACAAAAA+AGG | + | chr5_1:59622385-59622404 | Msa0740600:intron | 30.0% | |
| TAAGAATGAGACAGATGAAA+TGG | + | chr5_1:59622578-59622597 | Msa0740600:intron | 30.0% | |
| ATCATTAGAGGAAAGATAAC+AGG | - | chr5_1:59622760-59622779 | None:intergenic | 30.0% | |
| ATCTTTCCTCTAATGATTCA+CGG | + | chr5_1:59622763-59622782 | Msa0740600:intron | 30.0% | |
| CAAATGTAACTTAAACAGCT+GGG | + | chr5_1:59622992-59623011 | Msa0740600:intron | 30.0% | |
| TGATTAAGTTTCTACTTTGC+AGG | + | chr5_1:59623130-59623149 | Msa0740600:intron | 30.0% | |
| TTCGTTAAGAAACATATTGG+AGG | + | chr5_1:59623161-59623180 | Msa0740600:CDS | 30.0% | |
| TATGGTCATCTGTAAATTCT+TGG | + | chr5_1:59623322-59623341 | Msa0740600:intron | 30.0% | |
| GCAATGAAACATTTCAACAA+AGG | - | chr5_1:59623378-59623397 | None:intergenic | 30.0% | |
| ATTACCAAAGGTTCATCATA+CGG | - | chr5_1:59623566-59623585 | None:intergenic | 30.0% | |
| ! | CTTGTTTCTCATCTATTGAA+AGG | - | chr5_1:59623599-59623618 | None:intergenic | 30.0% |
| CTTTCAATAGATGAGAAACA+AGG | + | chr5_1:59623597-59623616 | Msa0740600:intron | 30.0% | |
| !! | ATAGTTGGTTTCTGGTTATA+CGG | + | chr5_1:59623622-59623641 | Msa0740600:intron | 30.0% |
| CTGGAAAGAATCAATAAACA+AGG | - | chr5_1:59623649-59623668 | None:intergenic | 30.0% | |
| ACTACTATCGGACATTTATA+AGG | - | chr5_1:59623691-59623710 | None:intergenic | 30.0% | |
| ACAATTTCTGTGTTCTCAAA+AGG | - | chr5_1:59623742-59623761 | None:intergenic | 30.0% | |
| !!! | GCATAAGCAAAACACTTTTT+TGG | - | chr5_1:59624128-59624147 | None:intergenic | 30.0% |
| ! | CTCTTTCAAGTATTCCACTT+TGG | - | chr5_1:59619869-59619888 | None:intergenic | 35.0% |
| GTATTTCATGTCTACCATGT+TGG | + | chr5_1:59620143-59620162 | Msa0740600:intron | 35.0% | |
| !! | AAATCTTTAAAGCACGGACA+TGG | + | chr5_1:59620221-59620240 | Msa0740600:intron | 35.0% |
| ! | ACATGTTTGATCTGAAGTGT+CGG | + | chr5_1:59620282-59620301 | Msa0740600:intron | 35.0% |
| GAAATGAAGATGCACAATCA+TGG | + | chr5_1:59620348-59620367 | Msa0740600:intron | 35.0% | |
| ! | CTATCTTTTCTACAACCTAG+TGG | - | chr5_1:59620408-59620427 | None:intergenic | 35.0% |
| AGAATGACCCTGATCAAAAT+AGG | + | chr5_1:59620449-59620468 | Msa0740600:intron | 35.0% | |
| AATTGTTGCTCGTCATCATA+AGG | + | chr5_1:59620512-59620531 | Msa0740600:intron | 35.0% | |
| ATTGTTGCTCGTCATCATAA+GGG | + | chr5_1:59620513-59620532 | Msa0740600:intron | 35.0% | |
| ! | ATCATAAGGGTATGTTTGCA+TGG | + | chr5_1:59620526-59620545 | Msa0740600:intron | 35.0% |
| ACTGAAATCAGATTCACTGA+AGG | - | chr5_1:59620859-59620878 | None:intergenic | 35.0% | |
| GTGAATCTGATTTCAGTTTC+TGG | + | chr5_1:59620862-59620881 | Msa0740600:intron | 35.0% | |
| CATAACAGAATCTTGCATTG+AGG | - | chr5_1:59620897-59620916 | None:intergenic | 35.0% | |
| ACCAAGCATAGGTGTTTAAT+CGG | - | chr5_1:59620923-59620942 | None:intergenic | 35.0% | |
| AAGAGGTAACACATAAGCAT+AGG | - | chr5_1:59621018-59621037 | None:intergenic | 35.0% | |
| !!! | TGGTCCAGAAATTTTAGAAC+TGG | - | chr5_1:59621069-59621088 | None:intergenic | 35.0% |
| TGCAGGTTTGAATATTGAAG+TGG | + | chr5_1:59621365-59621384 | Msa0740600:intron | 35.0% | |
| GGATGGAAACTTAACCAAAT+CGG | + | chr5_1:59621419-59621438 | Msa0740600:CDS | 35.0% | |
| ! | AATATATACCTCCACCGATT+TGG | - | chr5_1:59621436-59621455 | None:intergenic | 35.0% |
| AGGAAATAAGCCTAAAAAGG+GGG | - | chr5_1:59621569-59621588 | None:intergenic | 35.0% | |
| GAGGAAATAAGCCTAAAAAG+GGG | - | chr5_1:59621570-59621589 | None:intergenic | 35.0% | |
| CAGAGGAAATAAGCCTAAAA+AGG | - | chr5_1:59621572-59621591 | None:intergenic | 35.0% | |
| ! | AGTTTTCCCATAGAAAACAG+AGG | - | chr5_1:59621589-59621608 | None:intergenic | 35.0% |
| CTTGAAGAGTTAATCGAGAA+CGG | + | chr5_1:59621895-59621914 | Msa0740600:intron | 35.0% | |
| CAGAATCCATTGTTACTAGA+TGG | + | chr5_1:59622054-59622073 | Msa0740600:intron | 35.0% | |
| ATCCATTGTTACTAGATGGA+AGG | + | chr5_1:59622058-59622077 | Msa0740600:intron | 35.0% | |
| AACCTTCCATCTAGTAACAA+TGG | - | chr5_1:59622063-59622082 | None:intergenic | 35.0% | |
| GTTTGATGTATGACCAAATC+AGG | - | chr5_1:59622185-59622204 | None:intergenic | 35.0% | |
| AGTTCATAAAGAATACTGGC+AGG | + | chr5_1:59622668-59622687 | Msa0740600:intron | 35.0% | |
| AAGATAACAGGTTCTGTGAT+AGG | - | chr5_1:59622748-59622767 | None:intergenic | 35.0% | |
| TTTGATATGGGATCACAAAC+TGG | - | chr5_1:59622842-59622861 | None:intergenic | 35.0% | |
| TTGCAAACACTTAACAGCTA+TGG | - | chr5_1:59622968-59622987 | None:intergenic | 35.0% | |
| GCAAATGTAACTTAAACAGC+TGG | + | chr5_1:59622991-59623010 | Msa0740600:intron | 35.0% | |
| !! | TGACATCATTGGCTTGATAT+AGG | - | chr5_1:59623033-59623052 | None:intergenic | 35.0% |
| TTTGCAATGACTGACATCAT+TGG | - | chr5_1:59623044-59623063 | None:intergenic | 35.0% | |
| TCAACAATCGAAGTTAAGAC+AGG | - | chr5_1:59623400-59623419 | None:intergenic | 35.0% | |
| CTGCAAAATCGAAGTTAAAC+AGG | - | chr5_1:59623435-59623454 | None:intergenic | 35.0% | |
| GCAGAAATACATGCCAAAAT+TGG | + | chr5_1:59623451-59623470 | Msa0740600:intron | 35.0% | |
| GAAATACATGCCAAAATTGG+CGG | + | chr5_1:59623454-59623473 | Msa0740600:intron | 35.0% | |
| AAATACATGCCAAAATTGGC+GGG | + | chr5_1:59623455-59623474 | Msa0740600:CDS | 35.0% | |
| GTATAACCAGAAACCAACTA+TGG | - | chr5_1:59623623-59623642 | None:intergenic | 35.0% | |
| !!! | CTGTGCCTTTTTTGTTTTGA+AGG | - | chr5_1:59623812-59623831 | None:intergenic | 35.0% |
| CGTTATCATTTCTTGACCTT+TGG | - | chr5_1:59623899-59623918 | None:intergenic | 35.0% | |
| !!! | TGAAGTGTATTTTTGGCAGT+TGG | + | chr5_1:59624006-59624025 | Msa0740600:three_prime_UTR | 35.0% |
| TCAGAGTCAAAAGTGGTGAT+GGG | - | chr5_1:59619793-59619812 | None:intergenic | 40.0% | |
| !! | TAAAAGGGTACCATACCAGA+AGG | - | chr5_1:59619993-59620012 | None:intergenic | 40.0% |
| ATACATGTCAGTGTCGTGTT+GGG | - | chr5_1:59620250-59620269 | None:intergenic | 40.0% | |
| AACACGACACTGACATGTAT+CGG | + | chr5_1:59620250-59620269 | Msa0740600:intron | 40.0% | |
| CTTCAGATCAAACATGTGAC+CGG | - | chr5_1:59620279-59620298 | None:intergenic | 40.0% | |
| TTCCTCAACACACAAATCAC+AGG | - | chr5_1:59620331-59620350 | None:intergenic | 40.0% | |
| GAAGATGCACAATCATGGTA+TGG | + | chr5_1:59620353-59620372 | Msa0740600:intron | 40.0% | |
| TTCTACAACCTAGTGGGATA+AGG | - | chr5_1:59620401-59620420 | None:intergenic | 40.0% | |
| ! | ATAAGGGTATGTTTGCATGG+AGG | + | chr5_1:59620529-59620548 | Msa0740600:intron | 40.0% |
| ! | TAAGGGTATGTTTGCATGGA+GGG | + | chr5_1:59620530-59620549 | Msa0740600:intron | 40.0% |
| ! | TATGTTTGCATGGAGGGTTT+TGG | + | chr5_1:59620536-59620555 | Msa0740600:intron | 40.0% |
| TTTGGAAGGAAAGGAAAGGA+TGG | + | chr5_1:59620554-59620573 | Msa0740600:intron | 40.0% | |
| AGCATAATGTCCTAATGCCT+TGG | - | chr5_1:59620633-59620652 | None:intergenic | 40.0% | |
| TAAGAACGAACGGGAAAGAA+TGG | - | chr5_1:59620669-59620688 | None:intergenic | 40.0% | |
| ATGGAGGAGTTTGAAAGGAA+AGG | - | chr5_1:59620739-59620758 | None:intergenic | 40.0% | |
| TTTGGATGGAGGAGTTTGAA+AGG | - | chr5_1:59620744-59620763 | None:intergenic | 40.0% | |
| CTACTTGTAGCATGTTTGGA+TGG | - | chr5_1:59620758-59620777 | None:intergenic | 40.0% | |
| ! | ATTGATGACTCAACGACCAA+AGG | - | chr5_1:59620948-59620967 | None:intergenic | 40.0% |
| ACACAACCACATGTAAGCAT+TGG | - | chr5_1:59621089-59621108 | None:intergenic | 40.0% | |
| GCAGCTGCAATATACTTTCT+TGG | + | chr5_1:59621130-59621149 | Msa0740600:intron | 40.0% | |
| ! | GCAATATACTTTCTTGGTGC+AGG | + | chr5_1:59621136-59621155 | Msa0740600:intron | 40.0% |
| ATTACAGGTTACCTCTTGTC+TGG | + | chr5_1:59621239-59621258 | Msa0740600:CDS | 40.0% | |
| !! | TGGATTGACTTGGAAATGAC+TGG | + | chr5_1:59621259-59621278 | Msa0740600:CDS | 40.0% |
| !! | AGAATGTGTTACTTCGAGAG+TGG | + | chr5_1:59621291-59621310 | Msa0740600:intron | 40.0% |
| GATCAGTGCATTGAAACTTC+TGG | + | chr5_1:59621324-59621343 | Msa0740600:intron | 40.0% | |
| TGGAAACTTAACCAAATCGG+TGG | + | chr5_1:59621422-59621441 | Msa0740600:CDS | 40.0% | |
| AAACTTAACCAAATCGGTGG+AGG | + | chr5_1:59621425-59621444 | Msa0740600:CDS | 40.0% | |
| CTTACAAGCACCTAAATCTC+AGG | - | chr5_1:59621635-59621654 | None:intergenic | 40.0% | |
| TGAAAGAGAAGCTGAAGAAC+AGG | + | chr5_1:59622427-59622446 | Msa0740600:CDS | 40.0% | |
| TAAAGAATACTGGCAGGACT+CGG | + | chr5_1:59622674-59622693 | Msa0740600:intron | 40.0% | |
| CTAACACCGTGAATCATTAG+AGG | - | chr5_1:59622772-59622791 | None:intergenic | 40.0% | |
| AATCGTTTCTCTACAGAACG+TGG | + | chr5_1:59622926-59622945 | Msa0740600:intron | 40.0% | |
| !! | CATTGGCTTGATATAGGAGT+AGG | - | chr5_1:59623027-59623046 | None:intergenic | 40.0% |
| AGGGACAATGTACAGGAAAA+AGG | - | chr5_1:59623094-59623113 | None:intergenic | 40.0% | |
| AGGTACTTACAAACCTCTCT+TGG | + | chr5_1:59623181-59623200 | Msa0740600:CDS | 40.0% | |
| GGCAGGAAATTCGATATATG+TGG | + | chr5_1:59623202-59623221 | Msa0740600:CDS | 40.0% | |
| !! | CATCGATTCACGTGTTGATA+TGG | + | chr5_1:59623304-59623323 | Msa0740600:intron | 40.0% |
| AATACATGCCAAAATTGGCG+GGG | + | chr5_1:59623456-59623475 | Msa0740600:CDS | 40.0% | |
| TGCATTCGTTGGTATCCTAA+AGG | + | chr5_1:59623524-59623543 | Msa0740600:CDS | 40.0% | |
| TACTCCGTATGATGAACCTT+TGG | + | chr5_1:59623559-59623578 | Msa0740600:intron | 40.0% | |
| GGCTATGCACTAATTACCAA+AGG | - | chr5_1:59623578-59623597 | None:intergenic | 40.0% | |
| ATGAGAAACAAGGCCATAGT+TGG | + | chr5_1:59623607-59623626 | Msa0740600:intron | 40.0% | |
| ! | ACAAAAAAGGCACAGAGCTT+TGG | + | chr5_1:59623817-59623836 | Msa0740600:CDS | 40.0% |
| TGAGGAACTCAAGTACTACA+AGG | + | chr5_1:59623859-59623878 | Msa0740600:CDS | 40.0% | |
| !! | GGCAAACATTTTCAAGCCAA+AGG | + | chr5_1:59623880-59623899 | Msa0740600:CDS | 40.0% |
| !!! | GCAAAACACTTTTTTGGGCA+CGG | - | chr5_1:59624122-59624141 | None:intergenic | 40.0% |
| !! | AGTCAAAAGTGGTGATGGGT+GGG | - | chr5_1:59619789-59619808 | None:intergenic | 45.0% |
| CTCAGAGTCAAAAGTGGTGA+TGG | - | chr5_1:59619794-59619813 | None:intergenic | 45.0% | |
| CACTCACTCAGAGTCAAAAG+TGG | - | chr5_1:59619800-59619819 | None:intergenic | 45.0% | |
| GAAAAGAAACTGCGCCAAAG+TGG | + | chr5_1:59619852-59619871 | Msa0740600:five_prime_UTR | 45.0% | |
| AGGAAGAGAAGGAGGTTGAA+TGG | - | chr5_1:59619973-59619992 | None:intergenic | 45.0% | |
| ATACCAGAAGGAAGAGAAGG+AGG | - | chr5_1:59619981-59620000 | None:intergenic | 45.0% | |
| TCCTTCTCTTCCTTCTGGTA+TGG | + | chr5_1:59619980-59619999 | Msa0740600:intron | 45.0% | |
| ACCATACCAGAAGGAAGAGA+AGG | - | chr5_1:59619984-59620003 | None:intergenic | 45.0% | |
| GATACATGTCAGTGTCGTGT+TGG | - | chr5_1:59620251-59620270 | None:intergenic | 45.0% | |
| ACACGACACTGACATGTATC+GGG | + | chr5_1:59620251-59620270 | Msa0740600:intron | 45.0% | |
| !! | ATCTGAAGTGTCGGTGATAC+AGG | + | chr5_1:59620291-59620310 | Msa0740600:intron | 45.0% |
| !! | TCTGAAGTGTCGGTGATACA+GGG | + | chr5_1:59620292-59620311 | Msa0740600:intron | 45.0% |
| ! | AGCCTGTGATTTGTGTGTTG+AGG | + | chr5_1:59620326-59620345 | Msa0740600:intron | 45.0% |
| !!! | TTTGCATGGAGGGTTTTGGA+AGG | + | chr5_1:59620540-59620559 | Msa0740600:intron | 45.0% |
| !!! | ATGGAGGGTTTTGGAAGGAA+AGG | + | chr5_1:59620545-59620564 | Msa0740600:intron | 45.0% |
| !!! | GGGTTTTGGAAGGAAAGGAA+AGG | + | chr5_1:59620550-59620569 | Msa0740600:intron | 45.0% |
| CTTGTAGCATGTTTGGATGG+AGG | - | chr5_1:59620755-59620774 | None:intergenic | 45.0% | |
| TAAGTGTTCCAGAGCCTAAG+TGG | + | chr5_1:59620797-59620816 | Msa0740600:intron | 45.0% | |
| AAGTGTTCCAGAGCCTAAGT+GGG | + | chr5_1:59620798-59620817 | Msa0740600:intron | 45.0% | |
| GCCGATTAAACACCTATGCT+TGG | + | chr5_1:59620919-59620938 | Msa0740600:intron | 45.0% | |
| TGGTCGTTGAGTCATCAATG+AGG | + | chr5_1:59620949-59620968 | Msa0740600:intron | 45.0% | |
| TCTGGACCAATGCTTACATG+TGG | + | chr5_1:59621080-59621099 | Msa0740600:intron | 45.0% | |
| ! | TACTTTCTTGGTGCAGGTAG+TGG | + | chr5_1:59621142-59621161 | Msa0740600:intron | 45.0% |
| ! | AGTGGTGGAGAGAAAGCTAA+TGG | + | chr5_1:59621160-59621179 | Msa0740600:CDS | 45.0% |
| ACCTCTTGTCTGGATTGACT+TGG | + | chr5_1:59621249-59621268 | Msa0740600:CDS | 45.0% | |
| TCCAAGTCAATCCAGACAAG+AGG | - | chr5_1:59621253-59621272 | None:intergenic | 45.0% | |
| ! | CTAGCAACTTCCCCCTTTTT+AGG | + | chr5_1:59621556-59621575 | Msa0740600:intron | 45.0% |
| AAGCACCTAAATCTCAGGCA+AGG | - | chr5_1:59621630-59621649 | None:intergenic | 45.0% | |
| ! | TAGCCTCCACCCTTATTTGA+AGG | + | chr5_1:59621995-59622014 | Msa0740600:intron | 45.0% |
| ! | CACCCTTATTTGAAGGAGGA+GGG | + | chr5_1:59622002-59622021 | Msa0740600:intron | 45.0% |
| ! | ACCCTTATTTGAAGGAGGAG+GGG | + | chr5_1:59622003-59622022 | Msa0740600:intron | 45.0% |
| TCCCCTCCTCCTTCAAATAA+GGG | - | chr5_1:59622007-59622026 | None:intergenic | 45.0% | |
| TTCCCCTCCTCCTTCAAATA+AGG | - | chr5_1:59622008-59622027 | None:intergenic | 45.0% | |
| !! | AAACTAAGGAGTGCCTTGAC+AGG | + | chr5_1:59622201-59622220 | Msa0740600:CDS | 45.0% |
| AAAAGTCATCACGCTGCTAG+TGG | + | chr5_1:59622239-59622258 | Msa0740600:CDS | 45.0% | |
| AGCACGTCAATCACATGGTA+TGG | - | chr5_1:59622462-59622481 | None:intergenic | 45.0% | |
| ! | AAGAGAGCACGTCAATCACA+TGG | - | chr5_1:59622467-59622486 | None:intergenic | 45.0% |
| ! | ATTGACGTGCTCTCTTTTCG+TGG | + | chr5_1:59622471-59622490 | Msa0740600:intron | 45.0% |
| ! | TTGACGTGCTCTCTTTTCGT+GGG | + | chr5_1:59622472-59622491 | Msa0740600:intron | 45.0% |
| GGTCCTTGTTAGAGAACTCT+TGG | + | chr5_1:59622695-59622714 | Msa0740600:intron | 45.0% | |
| CCTTGTTAGAGAACTCTTGG+CGG | + | chr5_1:59622698-59622717 | Msa0740600:intron | 45.0% | |
| CTGATCAAGGGACAATGTAC+AGG | - | chr5_1:59623101-59623120 | None:intergenic | 45.0% | |
| ACATTGTCCCTTGATCAGTG+AGG | + | chr5_1:59623103-59623122 | Msa0740600:intron | 45.0% | |
| TCAGTTGCCTCACTGATCAA+GGG | - | chr5_1:59623113-59623132 | None:intergenic | 45.0% | |
| ATCAGTTGCCTCACTGATCA+AGG | - | chr5_1:59623114-59623133 | None:intergenic | 45.0% | |
| ACTTACAAACCTCTCTTGGC+AGG | + | chr5_1:59623185-59623204 | Msa0740600:CDS | 45.0% | |
| ATCGAATTTCCTGCCAAGAG+AGG | - | chr5_1:59623197-59623216 | None:intergenic | 45.0% | |
| TCTCAGCTCTTTGCATTCGT+TGG | + | chr5_1:59623513-59623532 | Msa0740600:CDS | 45.0% | |
| ! | ACAAGGCCATAGTTGGTTTC+TGG | + | chr5_1:59623614-59623633 | Msa0740600:intron | 45.0% |
| !! | AAAGTGGTGATGGGTGGGTT+GGG | - | chr5_1:59619784-59619803 | None:intergenic | 50.0% |
| !! | AAAAGTGGTGATGGGTGGGT+TGG | - | chr5_1:59619785-59619804 | None:intergenic | 50.0% |
| !! | GAGTCAAAAGTGGTGATGGG+TGG | - | chr5_1:59619790-59619809 | None:intergenic | 50.0% |
| CAACCTCCTTCTCTTCCTTC+TGG | + | chr5_1:59619975-59619994 | Msa0740600:CDS | 50.0% | |
| CACTGACATGTATCGGGTAC+CGG | + | chr5_1:59620257-59620276 | Msa0740600:intron | 50.0% | |
| CAACCTAGTGGGATAAGGCT+CGG | - | chr5_1:59620396-59620415 | None:intergenic | 50.0% | |
| AGTGTTCCAGAGCCTAAGTG+GGG | + | chr5_1:59620799-59620818 | Msa0740600:intron | 50.0% | |
| TTCTTCCTGCATCCCCACTT+AGG | - | chr5_1:59620814-59620833 | None:intergenic | 50.0% | |
| ! | CACCTATGCTTGGTAGCCTT+TGG | + | chr5_1:59620929-59620948 | Msa0740600:intron | 50.0% |
| GACCAAAGGCTACCAAGCAT+AGG | - | chr5_1:59620934-59620953 | None:intergenic | 50.0% | |
| ! | TTTCTTGGTGCAGGTAGTGG+TGG | + | chr5_1:59621145-59621164 | Msa0740600:intron | 50.0% |
| GAGGATTGTCTTCTTGCCTC+AGG | + | chr5_1:59621497-59621516 | Msa0740600:intron | 50.0% | |
| GGAAGTTGCTAGCTAGAGAC+TGG | - | chr5_1:59621548-59621567 | None:intergenic | 50.0% | |
| ACCTAAATCTCAGGCAAGGC+GGG | - | chr5_1:59621626-59621645 | None:intergenic | 50.0% | |
| CACCTAAATCTCAGGCAAGG+CGG | - | chr5_1:59621627-59621646 | None:intergenic | 50.0% | |
| CCTCCTTCAAATAAGGGTGG+AGG | - | chr5_1:59622001-59622020 | None:intergenic | 50.0% | |
| ! | CCTCCACCCTTATTTGAAGG+AGG | + | chr5_1:59621998-59622017 | Msa0740600:intron | 50.0% |
| CCTCCTCCTTCAAATAAGGG+TGG | - | chr5_1:59622004-59622023 | None:intergenic | 50.0% | |
| ! | CCACCCTTATTTGAAGGAGG+AGG | + | chr5_1:59622001-59622020 | Msa0740600:intron | 50.0% |
| !! | TAAGGAGTGCCTTGACAGGA+TGG | + | chr5_1:59622205-59622224 | Msa0740600:CDS | 50.0% |
| !! | AAGGAGTGCCTTGACAGGAT+GGG | + | chr5_1:59622206-59622225 | Msa0740600:CDS | 50.0% |
| ACCATTCTCCCATCCTGTCA+AGG | - | chr5_1:59622217-59622236 | None:intergenic | 50.0% | |
| TCCCAGCATCTCTGCATAGA+TGG | + | chr5_1:59622628-59622647 | Msa0740600:intron | 50.0% | |
| CCCATCTATGCAGAGATGCT+GGG | - | chr5_1:59622632-59622651 | None:intergenic | 50.0% | |
| CCCAGCATCTCTGCATAGAT+GGG | + | chr5_1:59622629-59622648 | Msa0740600:intron | 50.0% | |
| TCCCATCTATGCAGAGATGC+TGG | - | chr5_1:59622633-59622652 | None:intergenic | 50.0% | |
| CCGCCAAGAGTTCTCTAACA+AGG | - | chr5_1:59622701-59622720 | None:intergenic | 50.0% | |
| ! | GAGAAGATCCCCGCCAATTT+TGG | - | chr5_1:59623467-59623486 | None:intergenic | 50.0% |
| ! | TGGGTCGGGTCATGGGTTTT+GGG | - | chr5_1:59619760-59619779 | None:intergenic | 55.0% |
| ! | TTGGGTCGGGTCATGGGTTT+TGG | - | chr5_1:59619761-59619780 | None:intergenic | 55.0% |
| ! | CAACCGAGCCTTATCCCACT+AGG | + | chr5_1:59620390-59620409 | Msa0740600:intron | 55.0% |
| !! | ATCTCAGGCAAGGCGGGTTA+TGG | - | chr5_1:59621620-59621639 | None:intergenic | 55.0% |
| ACCCGCCTTGCCTGAGATTT+AGG | + | chr5_1:59621622-59621641 | Msa0740600:intron | 55.0% | |
| GCCTTGACAGGATGGGAGAA+TGG | + | chr5_1:59622213-59622232 | Msa0740600:CDS | 55.0% | |
| !! | GTTGGGTTGGGTCGGGTCAT+GGG | - | chr5_1:59619767-59619786 | None:intergenic | 60.0% |
| !! | ATGGGTGGGTTGGGTTGGGT+CGG | - | chr5_1:59619775-59619794 | None:intergenic | 60.0% |
| !! | GGTGATGGGTGGGTTGGGTT+GGG | - | chr5_1:59619779-59619798 | None:intergenic | 60.0% |
| !! | TGGTGATGGGTGGGTTGGGT+TGG | - | chr5_1:59619780-59619799 | None:intergenic | 60.0% |
| CTGCATCCCCACTTAGGCTC+TGG | - | chr5_1:59620808-59620827 | None:intergenic | 60.0% | |
| CAGAGCCTAAGTGGGGATGC+AGG | + | chr5_1:59620806-59620825 | Msa0740600:intron | 60.0% | |
| GGCGGGGATCTTCTCTCATG+TGG | + | chr5_1:59623472-59623491 | Msa0740600:CDS | 60.0% | |
| !! | GGTTGGGTTGGGTCGGGTCA+TGG | - | chr5_1:59619768-59619787 | None:intergenic | 65.0% |
| !! | TGGGTGGGTTGGGTTGGGTC+GGG | - | chr5_1:59619774-59619793 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 59619712 | 59624178 | 59619712 | ID=Msa0740600;Name=Msa0740600 |
| chr5_1 | mRNA | 59619712 | 59624178 | 59619712 | ID=Msa0740600-mRNA-1;Parent=Msa0740600;Name=Msa0740600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=203|1|1|1|0.85|1|8|265|239 |
| chr5_1 | exon | 59619712 | 59619996 | 59619712 | ID=Msa0740600-mRNA-1:exon:17178;Parent=Msa0740600-mRNA-1 |
| chr5_1 | exon | 59621158 | 59621280 | 59621158 | ID=Msa0740600-mRNA-1:exon:17179;Parent=Msa0740600-mRNA-1 |
| chr5_1 | exon | 59621370 | 59621446 | 59621370 | ID=Msa0740600-mRNA-1:exon:17180;Parent=Msa0740600-mRNA-1 |
| chr5_1 | exon | 59622179 | 59622260 | 59622179 | ID=Msa0740600-mRNA-1:exon:17181;Parent=Msa0740600-mRNA-1 |
| chr5_1 | exon | 59622393 | 59622448 | 59622393 | ID=Msa0740600-mRNA-1:exon:17182;Parent=Msa0740600-mRNA-1 |
| chr5_1 | exon | 59623152 | 59623241 | 59623152 | ID=Msa0740600-mRNA-1:exon:17183;Parent=Msa0740600-mRNA-1 |
| chr5_1 | exon | 59623455 | 59623545 | 59623455 | ID=Msa0740600-mRNA-1:exon:17184;Parent=Msa0740600-mRNA-1 |
| chr5_1 | exon | 59623795 | 59624178 | 59623795 | ID=Msa0740600-mRNA-1:exon:17185;Parent=Msa0740600-mRNA-1 |
| chr5_1 | five_prime_UTR | 59619712 | 59619914 | 59619712 | ID=Msa0740600-mRNA-1:five_prime_utr;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59619915 | 59619996 | 59619915 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59621158 | 59621280 | 59621158 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59621370 | 59621446 | 59621370 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59622179 | 59622260 | 59622179 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59622393 | 59622448 | 59622393 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59623152 | 59623241 | 59623152 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59623455 | 59623545 | 59623455 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | CDS | 59623795 | 59623913 | 59623795 | ID=Msa0740600-mRNA-1:cds;Parent=Msa0740600-mRNA-1 |
| chr5_1 | three_prime_UTR | 59623914 | 59624178 | 59623914 | ID=Msa0740600-mRNA-1:three_prime_utr;Parent=Msa0740600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
