AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0633570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633570 MtrunA17_Chr4g0011831 99.167 240 2 0 1 240 1 240 1.63e-176 484
Msa0633570 MtrunA17_Chr4g0001201 36.564 227 123 5 20 240 2 213 8.45e-42 141
Msa0633570 MtrunA17_Chr2g0333751 36.481 233 127 6 14 240 6 223 2.32e-41 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633570 AT2G45200.1 87.288 236 30 0 5 240 4 239 4.72e-154 427
Msa0633570 AT2G45200.2 81.102 254 30 1 5 240 4 257 1.54e-149 417
Msa0633570 AT1G15880.1 36.087 230 135 4 12 240 5 223 3.89e-41 140

Find 78 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTTTCTCATCATTTAT+TGG 0.113073 4_3:-19200104 Msa0633570:CDS
GGATGATATTTCGGACTTTA+AGG 0.169196 4_3:-19201475 Msa0633570:intron
CAATAACTGCTGACAGAATA+AGG 0.238804 4_3:+19200136 None:intergenic
CAAGGAAAAGTGAGGCTTCT+TGG 0.277079 4_3:-19200319 Msa0633570:CDS
ACCGAGCAAGCTACGAATAA+TGG 0.289236 4_3:+19200285 None:intergenic
TTCTGTTAGGGATGATATTT+CGG 0.292259 4_3:-19201484 Msa0633570:CDS
AAGGAAAAGTGAGGCTTCTT+GGG 0.331136 4_3:-19200318 Msa0633570:CDS
AATCTAGATTTGCAGGAATC+AGG 0.351249 4_3:-19205621 Msa0633570:CDS
CCGAGCAAGCTACGAATAAT+GGG 0.354967 4_3:+19200286 None:intergenic
GTTGTTTGCTTCAGGAGTTC+AGG 0.357787 4_3:-19201557 Msa0633570:intron
AACACAAAAGTAGTGAATTA+TGG 0.363454 4_3:-19200054 Msa0633570:three_prime_UTR
ATCCTTGCTCGAGAAACTAT+TGG 0.377748 4_3:-19202796 Msa0633570:CDS
CACGACAAATCTAGATTTGC+AGG 0.397417 4_3:-19205628 Msa0633570:CDS
TGTCCCACAAATTTCTGTTT+CGG 0.400618 4_3:-19205735 Msa0633570:five_prime_UTR
CTGTTGGGTCCAGTAGGTCT+TGG 0.402163 4_3:-19202842 Msa0633570:CDS
CCTCTTGTTATTAGGTTATG+TGG 0.405067 4_3:-19202880 Msa0633570:intron
TCAAGCTACAAGAGCTGTCT+TGG 0.408027 4_3:-19200371 Msa0633570:CDS
AACTTCTTCTAGCAGGCATC+TGG 0.415831 4_3:-19201390 Msa0633570:intron
GGTTCTCAGAGGGCATTGTT+TGG 0.419536 4_3:-19200349 Msa0633570:CDS
CATGGACTTCCAAGACCTAC+TGG 0.433265 4_3:+19202833 None:intergenic
GTCTTGGAAGTCCATGGAAA+TGG 0.434001 4_3:-19202826 Msa0633570:CDS
CATTGAGTTTATGTTCCCCT+TGG 0.435788 4_3:+19201530 None:intergenic
GATTTGTCGTGTCCCTCATT+CGG 0.452239 4_3:+19205640 None:intergenic
ACACCGAAACAGAAATTTGT+GGG 0.456286 4_3:+19205732 None:intergenic
AGTAGATGTGCTGCATCTGC+TGG 0.459514 4_3:-19202756 Msa0633570:CDS
CCCATTATTCGTAGCTTGCT+CGG 0.465386 4_3:-19200286 Msa0633570:intron
TACTTCTGTAACACAGAAGT+TGG 0.472524 4_3:-19202727 Msa0633570:CDS
ATAGTTTCTCGAGCAAGGAT+TGG 0.479613 4_3:+19202799 None:intergenic
GATGGTGGCTCACCATCTGT+TGG 0.482816 4_3:-19202858 Msa0633570:CDS
GGATTGGATTTCCATTTCCA+TGG 0.485603 4_3:+19202815 None:intergenic
CGATAAGAAGGCGAAAATCA+AGG 0.488091 4_3:-19200164 Msa0633570:CDS
ATCAACTAAACACAAATATG+AGG 0.491323 4_3:+19199929 None:intergenic
AGATTTGCAGGAATCAGGTT+GGG 0.492544 4_3:-19205616 Msa0633570:CDS
AATAACTGCTGACAGAATAA+GGG 0.496188 4_3:+19200137 None:intergenic
CAAAATACAACAACCGAATG+AGG 0.496330 4_3:-19205653 Msa0633570:exon
TCACGTAATAACTGCATCCT+TGG 0.499294 4_3:+19201357 None:intergenic
GTCCAATAGTTTCTCGAGCA+AGG 0.499653 4_3:+19202794 None:intergenic
CAAGCTACAAGAGCTGTCTT+GGG 0.501409 4_3:-19200370 Msa0633570:CDS
GCATTGTTTGGCGATGTTCA+AGG 0.518710 4_3:-19200337 Msa0633570:CDS
CGTGAGAGAGCCTCCATCCA+TGG 0.523033 4_3:-19201339 Msa0633570:CDS
CTTTCTTCTTACGCTAAACT+CGG 0.523733 4_3:-19205543 Msa0633570:CDS
TTTACAATCCACATTTGCCT+AGG 0.525432 4_3:-19199954 Msa0633570:three_prime_UTR
TTGTTATTAGGTTATGTGGA+TGG 0.526319 4_3:-19202876 Msa0633570:intron
ATGGTGGCTCACCATCTGTT+GGG 0.536398 4_3:-19202857 Msa0633570:CDS
TTCTGTGTTACAGAAGTAGC+TGG 0.537855 4_3:+19202732 None:intergenic
CAGTAGGTCTTGGAAGTCCA+TGG 0.539641 4_3:-19202832 Msa0633570:CDS
ATGAGGCTCCTAGGCAAATG+TGG 0.550935 4_3:+19199946 None:intergenic
AGCTGTCTTGGGTTCTCAGA+GGG 0.552364 4_3:-19200359 Msa0633570:CDS
AACACAAATATGAGGCTCCT+AGG 0.552468 4_3:+19199937 None:intergenic
TAGATTTGCAGGAATCAGGT+TGG 0.553621 4_3:-19205617 Msa0633570:CDS
CACCATCTGTTGGGTCCAGT+AGG 0.560246 4_3:-19202848 Msa0633570:CDS
GATAAGAAGGCGAAAATCAA+GGG 0.563741 4_3:-19200163 Msa0633570:CDS
TACACCGAAACAGAAATTTG+TGG 0.565796 4_3:+19205731 None:intergenic
GGGGAACATAAACTCAATGA+AGG 0.567757 4_3:-19201526 Msa0633570:CDS
TTACATGAGACGTACTTCCA+TGG 0.570002 4_3:+19201322 None:intergenic
CTGTAACACAGAAGTTGGCT+AGG 0.573524 4_3:-19202722 Msa0633570:CDS
AGGTTGGGAGGAACTTCGTA+AGG 0.582246 4_3:-19205601 Msa0633570:CDS
CAGGAGTTCAGGCGTACCAA+GGG 0.582622 4_3:-19201546 Msa0633570:CDS
TCAGGAGTTCAGGCGTACCA+AGG 0.584470 4_3:-19201547 Msa0633570:intron
TTATTAGGTTATGTGGATGG+TGG 0.585061 4_3:-19202873 Msa0633570:intron
AGGAAAAGTGAGGCTTCTTG+GGG 0.588008 4_3:-19200317 Msa0633570:CDS
ATGAGACGTACTTCCATGGA+TGG 0.591355 4_3:+19201326 None:intergenic
CTCGGTGCTAGATTCACTCA+AGG 0.599442 4_3:-19205525 Msa0633570:CDS
AGATGCAGCACATCTACTCA+TGG 0.603446 4_3:+19202761 None:intergenic
AAGGAAGCGCGTAAGATCGA+AGG 0.606205 4_3:-19205582 Msa0633570:CDS
GACCTACTGGACCCAACAGA+TGG 0.606510 4_3:+19202846 None:intergenic
TATTCTTCATGAGTTTACCC+AGG 0.621068 4_3:-19202691 Msa0633570:intron
AAAATACAACAACCGAATGA+GGG 0.624338 4_3:-19205652 Msa0633570:exon
TGCGCAGAGTAAAGAGAGTG+TGG 0.627327 4_3:+19205689 None:intergenic
TTTGCAGGAATCAGGTTGGG+AGG 0.632784 4_3:-19205613 Msa0633570:CDS
CCAATAAATGATGAGAAACA+AGG 0.636384 4_3:+19200104 None:intergenic
GAGCTGTCTTGGGTTCTCAG+AGG 0.646743 4_3:-19200360 Msa0633570:CDS
AGACGTACTTCCATGGATGG+AGG 0.668866 4_3:+19201329 None:intergenic
GCGATGTTCAAGGAAAAGTG+AGG 0.672498 4_3:-19200327 Msa0633570:CDS
AGGAGTTCAGGCGTACCAAG+GGG 0.707609 4_3:-19201545 Msa0633570:CDS
CGAGCAAGCTACGAATAATG+GGG 0.708413 4_3:+19200287 None:intergenic
GGTGCTAGATTCACTCAAGG+AGG 0.719729 4_3:-19205522 Msa0633570:intron
CATCTGGTAGTATGTCACCA+AGG 0.721954 4_3:-19201374 Msa0633570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAAATTATTCAATG+CGG + chr4_3:19202312-19202331 None:intergenic 10.0%
!! AAAATATCATTGATATTTAA+AGG + chr4_3:19202436-19202455 None:intergenic 10.0%
!!! ATAAACTAATTTTTTACATT+TGG - chr4_3:19202501-19202520 Msa0633570:intron 10.0%
!!! TAAACTAATTTTTTACATTT+GGG - chr4_3:19202502-19202521 Msa0633570:intron 10.0%
!!! ATTTTATATTAAAATTGTGT+TGG - chr4_3:19202666-19202685 Msa0633570:intron 10.0%
!!! TTTTATATTAAAATTGTGTT+GGG - chr4_3:19202667-19202686 Msa0633570:intron 10.0%
!!! CTTTTTTTTTTTTTTTAAAC+TGG + chr4_3:19203091-19203110 None:intergenic 10.0%
!! AAAAAAAAAAAAAGAATTTC+TGG - chr4_3:19203097-19203116 Msa0633570:intron 10.0%
!! AAAAAAAAAAAAGAATTTCT+GGG - chr4_3:19203098-19203117 Msa0633570:intron 10.0%
!!! AGATACTTTAAAATATAAAA+AGG - chr4_3:19203763-19203782 Msa0633570:intron 10.0%
!!! GATACTTTAAAATATAAAAA+GGG - chr4_3:19203764-19203783 Msa0633570:intron 10.0%
!!! ATACTTTAAAATATAAAAAG+GGG - chr4_3:19203765-19203784 Msa0633570:intron 10.0%
!!! TTATATAAATATTTTCTTAC+AGG - chr4_3:19204278-19204297 Msa0633570:intron 10.0%
!! ATAAAAGTAATTTCAAAATT+TGG + chr4_3:19204936-19204955 None:intergenic 10.0%
!! AATATAAATTTGAAAATCAA+TGG + chr4_3:19205477-19205496 None:intergenic 10.0%
!!! ATTTTCAAATTTATATTTCA+TGG - chr4_3:19205480-19205499 Msa0633570:intron 10.0%
!! ATTGAATCTGAATAAATAAA+AGG - chr4_3:19200641-19200660 Msa0633570:intron 15.0%
!! TTGAATCTGAATAAATAAAA+GGG - chr4_3:19200642-19200661 Msa0633570:intron 15.0%
!! TAAAGTTATTTATTTACGTT+AGG + chr4_3:19201696-19201715 None:intergenic 15.0%
!! TTAAAAAAATTATTCAATGC+GGG + chr4_3:19202311-19202330 None:intergenic 15.0%
!! AAAAAATAGAACAAAACAAA+AGG + chr4_3:19203529-19203548 None:intergenic 15.0%
!!! TACTTTAAAATATAAAAAGG+GGG - chr4_3:19203766-19203785 Msa0633570:intron 15.0%
!! TTAATTCTAATTTCTTATGT+AGG - chr4_3:19204004-19204023 Msa0633570:intron 15.0%
!! AACTCATTAATATTGAAAAA+CGG + chr4_3:19204525-19204544 None:intergenic 15.0%
!!! TTTTTCAATATTAATGAGTT+GGG - chr4_3:19204525-19204544 Msa0633570:intron 15.0%
!!! AATTGTAAATTCTTTTTGGA+AGG + chr4_3:19199939-19199958 None:intergenic 20.0%
!!! CTCTAATTGTAAATTCTTTT+TGG + chr4_3:19199943-19199962 None:intergenic 20.0%
!! TAAATGAATTAGTGTTTGTT+TGG - chr4_3:19200447-19200466 Msa0633570:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr4_3:19200557-19200576 Msa0633570:intron 20.0%
!! TAGATGTATTTATGTAAAAG+TGG - chr4_3:19200690-19200709 Msa0633570:intron 20.0%
!! TGGATTTAGCAATAAATTTA+AGG - chr4_3:19200710-19200729 Msa0633570:intron 20.0%
!! GGATTTAGCAATAAATTTAA+GGG - chr4_3:19200711-19200730 Msa0633570:intron 20.0%
!!! AGAATTGATTTTATCATGTT+TGG + chr4_3:19200825-19200844 None:intergenic 20.0%
!! ATCTAATGTGCTAAAATTTA+GGG + chr4_3:19201215-19201234 None:intergenic 20.0%
!! AATCTAATGTGCTAAAATTT+AGG + chr4_3:19201216-19201235 None:intergenic 20.0%
!!! TTATTTTTCAACTCACTTTT+AGG - chr4_3:19201661-19201680 Msa0633570:intron 20.0%
!!! TTATACATAACATTTGCTTT+TGG - chr4_3:19202078-19202097 Msa0633570:intron 20.0%
!! TAAAAAAATTATTCAATGCG+GGG + chr4_3:19202310-19202329 None:intergenic 20.0%
!! CATAGAAAATATCGTATTAA+TGG + chr4_3:19203618-19203637 None:intergenic 20.0%
!! TTATCATACACGTATAATAT+TGG - chr4_3:19203651-19203670 Msa0633570:intron 20.0%
!! TATAATATTGGACACAAATA+AGG - chr4_3:19203663-19203682 Msa0633570:intron 20.0%
!! ATAATATTGGACACAAATAA+GGG - chr4_3:19203664-19203683 Msa0633570:intron 20.0%
!!! ATTTTACATAACAGTAGAAA+AGG + chr4_3:19203983-19204002 None:intergenic 20.0%
!! CTTACATTACTGTAATAAAT+TGG - chr4_3:19204059-19204078 Msa0633570:intron 20.0%
!!! GTTTTTCAATATTAATGAGT+TGG - chr4_3:19204524-19204543 Msa0633570:intron 20.0%
!!! ATTGTCAATTACTAATGTTT+TGG - chr4_3:19204568-19204587 Msa0633570:intron 20.0%
!!! TTACTCTAAAATTACACTAA+TGG - chr4_3:19204649-19204668 Msa0633570:intron 20.0%
!! TCTTGATTTCTCAAAATAAA+TGG + chr4_3:19204681-19204700 None:intergenic 20.0%
!!! ATTTATTTTGAGAAATCAAG+AGG - chr4_3:19204680-19204699 Msa0633570:intron 20.0%
!! AGCTATATGACATTAATAAT+GGG + chr4_3:19204713-19204732 None:intergenic 20.0%
!! TAGCTATATGACATTAATAA+TGG + chr4_3:19204714-19204733 None:intergenic 20.0%
!! ATTATTAATGTCATATAGCT+AGG - chr4_3:19204713-19204732 Msa0633570:intron 20.0%
!!! TGTCTTTTAAATCAATTCTA+AGG - chr4_3:19204793-19204812 Msa0633570:intron 20.0%
!! TCAAAATTTGGAAGAATAAA+TGG + chr4_3:19204924-19204943 None:intergenic 20.0%
!! TACTAGTATATCAAATTCTT+AGG - chr4_3:19205057-19205076 Msa0633570:intron 20.0%
!! ACTAGTATATCAAATTCTTA+GGG - chr4_3:19205058-19205077 Msa0633570:intron 20.0%
!!! TCTTTAAAACTAAATCTTAC+TGG + chr4_3:19205152-19205171 None:intergenic 20.0%
!!! TCTTTGACTATTTACTTTTT+AGG - chr4_3:19205704-19205723 Msa0633570:five_prime_UTR 20.0%
!!! CTTTGACTATTTACTTTTTA+GGG - chr4_3:19205705-19205724 Msa0633570:five_prime_UTR 20.0%
!!! CATATGTTTGGTTTCAATTT+TGG + chr4_3:19200875-19200894 None:intergenic 25.0%
! CAAAATTGAAACCAAACATA+TGG - chr4_3:19200873-19200892 Msa0633570:intron 25.0%
! CATTCAATTAACCATATGTT+TGG + chr4_3:19200887-19200906 None:intergenic 25.0%
!!! GTAATGATCTACGTTATTTT+CGG + chr4_3:19201147-19201166 None:intergenic 25.0%
! AATAACGTAGATCATTACAT+TGG - chr4_3:19201149-19201168 Msa0633570:intron 25.0%
! TCTCACATTTAATGAAAAAG+TGG + chr4_3:19201277-19201296 None:intergenic 25.0%
! CAAATATATTGTTCTGCATT+TGG + chr4_3:19201546-19201565 None:intergenic 25.0%
! TCAAAATAGAATCAATTTGG+AGG + chr4_3:19201595-19201614 None:intergenic 25.0%
! TCGTCAAAATAGAATCAATT+TGG + chr4_3:19201598-19201617 None:intergenic 25.0%
!!! ATTGATTCTATTTTGACGAT+AGG - chr4_3:19201599-19201618 Msa0633570:intron 25.0%
!!! CTAATTTTTTACATTTGGGA+CGG - chr4_3:19202506-19202525 Msa0633570:intron 25.0%
!!! TAATTTTTTACATTTGGGAC+GGG - chr4_3:19202507-19202526 Msa0633570:intron 25.0%
! AAAATTGTGTTGGGATAATA+TGG - chr4_3:19202676-19202695 Msa0633570:intron 25.0%
! CGATAGAATTTCATCATTAT+TGG + chr4_3:19202769-19202788 None:intergenic 25.0%
! TTGGGTTTGAATTTAAGAAT+AGG - chr4_3:19203196-19203215 Msa0633570:intron 25.0%
! CTTTGTATTATGGAAATCAT+GGG - chr4_3:19203331-19203350 Msa0633570:intron 25.0%
!! AATACGATATTTTCTATGCT+CGG - chr4_3:19203620-19203639 Msa0633570:intron 25.0%
!! TTTAAAATATAAAAAGGGGG+AGG - chr4_3:19203769-19203788 Msa0633570:intron 25.0%
! ATGAAACACAAAGTTCAATT+TGG + chr4_3:19203884-19203903 None:intergenic 25.0%
! TTAAATTCTTTATTCGACCA+TGG - chr4_3:19204416-19204435 Msa0633570:intron 25.0%
! AATTGACAATTCCATTTCAA+TGG + chr4_3:19204558-19204577 None:intergenic 25.0%
! AATGCACGCATTTAAAAAAT+TGG + chr4_3:19204617-19204636 None:intergenic 25.0%
! TGATTTCTCAAAATAAATGG+AGG + chr4_3:19204678-19204697 None:intergenic 25.0%
!! TATGACATTAATAATGGGAA+AGG + chr4_3:19204708-19204727 None:intergenic 25.0%
!! TCAAATTTTGTATATTGGGA+AGG + chr4_3:19204836-19204855 None:intergenic 25.0%
! TTACTAGAAGCCATAATAAT+GGG - chr4_3:19205187-19205206 Msa0633570:intron 25.0%
!!! TGATATCCTGTTTTTTTTTG+CGG - chr4_3:19205250-19205269 Msa0633570:intron 25.0%
! TCATCTATCTGAAAAAATGT+CGG + chr4_3:19205297-19205316 None:intergenic 25.0%
! AACACAAAAGTAGTGAATTA+TGG - chr4_3:19205649-19205668 Msa0633570:exon 25.0%
! ATCAACTAAACACAAATATG+AGG + chr4_3:19205777-19205796 None:intergenic 25.0%
AAAATACAACAACCGAATGA+GGG - chr4_3:19200051-19200070 Msa0633570:three_prime_UTR 30.0%
!! TCATCGTTTTTCTGTTGAAT+TGG - chr4_3:19200232-19200251 Msa0633570:intron 30.0%
!! TTTGATTTTGAGAGAGATGA+TGG - chr4_3:19200284-19200303 Msa0633570:intron 30.0%
!! AGTGATTTTAGTATGTGATC+TGG - chr4_3:19200308-19200327 Msa0633570:CDS 30.0%
TTTAAGGGTAAAATCGATTG+TGG - chr4_3:19200726-19200745 Msa0633570:intron 30.0%
AACAGAGAATTTACTAAGAG+CGG - chr4_3:19201028-19201047 Msa0633570:intron 30.0%
GTTAGAGGTAAGAAATTGTT+GGG - chr4_3:19201109-19201128 Msa0633570:intron 30.0%
TAAGAAATTGTTGGGTATGA+GGG - chr4_3:19201117-19201136 Msa0633570:intron 30.0%
ATTCACACTTGAAATACGAA+CGG - chr4_3:19201302-19201321 Msa0633570:intron 30.0%
! GTGATTTCTTTTCATAGTCA+AGG - chr4_3:19201354-19201373 Msa0633570:CDS 30.0%
! TTTTGATCTTTTGCGTGAAT+TGG - chr4_3:19201623-19201642 Msa0633570:intron 30.0%
ATTCAACCACTTCTACTAAT+GGG + chr4_3:19201841-19201860 None:intergenic 30.0%
! TAAACACATGTTAGTTTCTG+TGG + chr4_3:19201876-19201895 None:intergenic 30.0%
TTAGAATCATGTTTGACAAG+AGG + chr4_3:19201933-19201952 None:intergenic 30.0%
TCTTGTCAAACATGATTCTA+AGG - chr4_3:19201932-19201951 Msa0633570:intron 30.0%
AGTATTTAAGAATCGGGTAT+GGG + chr4_3:19202196-19202215 None:intergenic 30.0%
AAGTATTTAAGAATCGGGTA+TGG + chr4_3:19202197-19202216 None:intergenic 30.0%
ACGGGTAAGTATTTAAGAAT+CGG + chr4_3:19202203-19202222 None:intergenic 30.0%
! TGTATTACAACGTTGCTATT+GGG + chr4_3:19202359-19202378 None:intergenic 30.0%
ATGTATTACAACGTTGCTAT+TGG + chr4_3:19202360-19202379 None:intergenic 30.0%
TATGTTAATCCCCAATTTGA+CGG + chr4_3:19202647-19202666 None:intergenic 30.0%
!! GGTGTTTACTTTTCGTATTA+CGG - chr4_3:19202703-19202722 Msa0633570:CDS 30.0%
! TTGTTATTAGGTTATGTGGA+TGG - chr4_3:19202827-19202846 Msa0633570:CDS 30.0%
! AATTTTATAGCAACAGACCT+GGG + chr4_3:19203032-19203051 None:intergenic 30.0%
! AAATTTTATAGCAACAGACC+TGG + chr4_3:19203033-19203052 None:intergenic 30.0%
CCATGATTTCCATAATACAA+AGG + chr4_3:19203333-19203352 None:intergenic 30.0%
CCTTTGTATTATGGAAATCA+TGG - chr4_3:19203330-19203349 Msa0633570:intron 30.0%
TTGCAAGCAAAATCTAAATG+CGG - chr4_3:19203439-19203458 Msa0633570:intron 30.0%
!! TGAGATTTTTAGGAGAAGAT+CGG - chr4_3:19203486-19203505 Msa0633570:intron 30.0%
ATTTATTGTCACCTTGAATC+AGG - chr4_3:19203580-19203599 Msa0633570:intron 30.0%
ATAAAGAAATCATGGTCTGA+TGG + chr4_3:19203913-19203932 None:intergenic 30.0%
TTGACATGATATATTCTCTG+TGG - chr4_3:19203942-19203961 Msa0633570:intron 30.0%
TTCTGTTAGGGATGATATTT+CGG - chr4_3:19204219-19204238 Msa0633570:intron 30.0%
AATTTAACTCAGATCATGCT+CGG + chr4_3:19204260-19204279 None:intergenic 30.0%
GTAGCTAACATTTGTCAATA+TGG - chr4_3:19204747-19204766 Msa0633570:intron 30.0%
ATTTAAAAGACACCAAATGC+AGG + chr4_3:19204785-19204804 None:intergenic 30.0%
! CGGCTCAAATTTTGTATATT+GGG + chr4_3:19204840-19204859 None:intergenic 30.0%
! TCGGCTCAAATTTTGTATAT+TGG + chr4_3:19204841-19204860 None:intergenic 30.0%
!!! CTCATTTATTGGTTTTAGCA+AGG - chr4_3:19205013-19205032 Msa0633570:intron 30.0%
!! AAATTCTTAGGGCATTTTGT+CGG - chr4_3:19205069-19205088 Msa0633570:intron 30.0%
CTTACTAGAAGCCATAATAA+TGG - chr4_3:19205186-19205205 Msa0633570:intron 30.0%
TTCTATAGGACCCATTATTA+TGG + chr4_3:19205200-19205219 None:intergenic 30.0%
GATCTGATAAGAGTTTCTAT+AGG + chr4_3:19205214-19205233 None:intergenic 30.0%
AAAACAGGATATCACAGTAA+TGG + chr4_3:19205244-19205263 None:intergenic 30.0%
AAGAATCCGCAAAAAAAAAC+AGG + chr4_3:19205259-19205278 None:intergenic 30.0%
CATCTATCTGAAAAAATGTC+GGG + chr4_3:19205296-19205315 None:intergenic 30.0%
AATAACTGCTGACAGAATAA+GGG + chr4_3:19205569-19205588 None:intergenic 30.0%
CCAATAAATGATGAGAAACA+AGG + chr4_3:19205602-19205621 None:intergenic 30.0%
! CCTTGTTTCTCATCATTTAT+TGG - chr4_3:19205599-19205618 Msa0633570:CDS 30.0%
TGTCCCACAAATTTCTGTTT+CGG - chr4_3:19199968-19199987 Msa0633570:three_prime_UTR 35.0%
ACACCGAAACAGAAATTTGT+GGG + chr4_3:19199974-19199993 None:intergenic 35.0%
TACACCGAAACAGAAATTTG+TGG + chr4_3:19199975-19199994 None:intergenic 35.0%
CAAAATACAACAACCGAATG+AGG - chr4_3:19200050-19200069 Msa0633570:three_prime_UTR 35.0%
AATCTAGATTTGCAGGAATC+AGG - chr4_3:19200082-19200101 Msa0633570:exon 35.0%
CTTTCTTCTTACGCTAAACT+CGG - chr4_3:19200160-19200179 Msa0633570:CDS 35.0%
AACGATGAATGCGATGAAAA+GGG + chr4_3:19200220-19200239 None:intergenic 35.0%
AAACGATGAATGCGATGAAA+AGG + chr4_3:19200221-19200240 None:intergenic 35.0%
! TTTTAGTATGTGATCTGGAG+TGG - chr4_3:19200313-19200332 Msa0633570:CDS 35.0%
!!! TTTGTTTGGTTTTGCAAGCA+CGG - chr4_3:19200461-19200480 Msa0633570:intron 35.0%
TCTCAAATTATTAGCGGTGT+TGG - chr4_3:19200563-19200582 Msa0633570:intron 35.0%
! GAATTGATTCTACTTGAAGC+TGG + chr4_3:19200771-19200790 None:intergenic 35.0%
!! GTTTGGTTTCAATTTTGGAG+TGG + chr4_3:19200870-19200889 None:intergenic 35.0%
! ATGCATTTCATCAGAAGTGT+CGG - chr4_3:19200959-19200978 Msa0633570:intron 35.0%
ACAGAGAATTTACTAAGAGC+GGG - chr4_3:19201029-19201048 Msa0633570:intron 35.0%
AGCTCAAAACAATGCTTCAT+TGG - chr4_3:19201080-19201099 Msa0633570:intron 35.0%
GCTCAAAACAATGCTTCATT+GGG - chr4_3:19201081-19201100 Msa0633570:intron 35.0%
AAAACAATGCTTCATTGGGT+TGG - chr4_3:19201085-19201104 Msa0633570:intron 35.0%
AAACAATGCTTCATTGGGTT+GGG - chr4_3:19201086-19201105 Msa0633570:intron 35.0%
GGTTAGAGGTAAGAAATTGT+TGG - chr4_3:19201108-19201127 Msa0633570:intron 35.0%
GTAAGAAATTGTTGGGTATG+AGG - chr4_3:19201116-19201135 Msa0633570:intron 35.0%
AAGAAATTGTTGGGTATGAG+GGG - chr4_3:19201118-19201137 Msa0633570:intron 35.0%
TGCTAAAATTTAGGGAGATG+TGG + chr4_3:19201207-19201226 None:intergenic 35.0%
AACGGAAATGACATGACATA+GGG - chr4_3:19201320-19201339 Msa0633570:intron 35.0%
! CTTTTGGTAGGAATGTTCAT+TGG - chr4_3:19201386-19201405 Msa0633570:intron 35.0%
CATTCAACCACTTCTACTAA+TGG + chr4_3:19201842-19201861 None:intergenic 35.0%
TAACATGTGTTTAGCGTGTT+TGG - chr4_3:19201883-19201902 Msa0633570:intron 35.0%
TTTAGCGTGTTTGGTTATGT+TGG - chr4_3:19201892-19201911 Msa0633570:intron 35.0%
CTAAGGAAAATACAAGTGCT+TGG - chr4_3:19201949-19201968 Msa0633570:intron 35.0%
! AGTCTGCCTTCTTATTGATT+AGG - chr4_3:19202126-19202145 Msa0633570:intron 35.0%
! TTATTGATTAGGCATGGCAA+TGG - chr4_3:19202137-19202156 Msa0633570:intron 35.0%
! TATTGATTAGGCATGGCAAT+GGG - chr4_3:19202138-19202157 Msa0633570:intron 35.0%
GTATTTAAGAATCGGGTATG+GGG + chr4_3:19202195-19202214 None:intergenic 35.0%
CGGGTAAGTATTTAAGAATC+GGG + chr4_3:19202202-19202221 None:intergenic 35.0%
! GTATTACAACGTTGCTATTG+GGG + chr4_3:19202358-19202377 None:intergenic 35.0%
! TTTTCCCCGATTTCAAAACA+CGG + chr4_3:19202585-19202604 None:intergenic 35.0%
ATGTTAATCCCCAATTTGAC+GGG + chr4_3:19202646-19202665 None:intergenic 35.0%
!! CATTCTGACCTCTTGTTATT+AGG - chr4_3:19202815-19202834 Msa0633570:CDS 35.0%
CCACATAACCTAATAACAAG+AGG + chr4_3:19202826-19202845 None:intergenic 35.0%
!! CCTCTTGTTATTAGGTTATG+TGG - chr4_3:19202823-19202842 Msa0633570:CDS 35.0%
TTATTAGGTTATGTGGATGG+TGG - chr4_3:19202830-19202849 Msa0633570:CDS 35.0%
TACTTCTGTAACACAGAAGT+TGG - chr4_3:19202976-19202995 Msa0633570:intron 35.0%
TATTCTTCATGAGTTTACCC+AGG - chr4_3:19203012-19203031 Msa0633570:intron 35.0%
AGAATATACAGGTTATGGTG+TGG + chr4_3:19203165-19203184 None:intergenic 35.0%
CACCATAACCTGTATATTCT+TGG - chr4_3:19203165-19203184 Msa0633570:intron 35.0%
GTCCAAGAATATACAGGTTA+TGG + chr4_3:19203170-19203189 None:intergenic 35.0%
TATATTCTTGGACACTGCAT+TGG - chr4_3:19203177-19203196 Msa0633570:intron 35.0%
ATATTCTTGGACACTGCATT+GGG - chr4_3:19203178-19203197 Msa0633570:intron 35.0%
CACAGAAGTTGAATCTAGAA+TGG + chr4_3:19203308-19203327 None:intergenic 35.0%
TTCTGTGAGCCTTTGTATTA+TGG - chr4_3:19203321-19203340 Msa0633570:intron 35.0%
TGCAAGCAAAATCTAAATGC+GGG - chr4_3:19203440-19203459 Msa0633570:intron 35.0%
TCTTTGTAATTTCAGAACCC+AGG - chr4_3:19203557-19203576 Msa0633570:intron 35.0%
TCAAGGTGACAATAAATCCT+GGG + chr4_3:19203577-19203596 None:intergenic 35.0%
TTCAAGGTGACAATAAATCC+TGG + chr4_3:19203578-19203597 None:intergenic 35.0%
GAAAATTCAAGCCTGATTCA+AGG + chr4_3:19203594-19203613 None:intergenic 35.0%
! TATTTTCTATGCTCGGTATC+AGG - chr4_3:19203627-19203646 Msa0633570:intron 35.0%
! TCTCCTTTTTGATAGATGGT+GGG + chr4_3:19203738-19203757 None:intergenic 35.0%
! ACTCTCTCCTTTTTGATAGA+TGG + chr4_3:19203742-19203761 None:intergenic 35.0%
AAAGTTCAATTTGGCTAAGC+CGG + chr4_3:19203875-19203894 None:intergenic 35.0%
ATATTCTCTGTGGTTCTTTG+TGG - chr4_3:19203952-19203971 Msa0633570:intron 35.0%
CCTGAAGCAAACAACAAAAA+AGG + chr4_3:19204141-19204160 None:intergenic 35.0%
!!! CCTTTTTTGTTGTTTGCTTC+AGG - chr4_3:19204138-19204157 Msa0633570:intron 35.0%
!!! AGAGCTTTTAGGTTCTGTTA+GGG - chr4_3:19204207-19204226 Msa0633570:intron 35.0%
GGATGATATTTCGGACTTTA+AGG - chr4_3:19204228-19204247 Msa0633570:intron 35.0%
ATTTAACTCAGATCATGCTC+GGG + chr4_3:19204259-19204278 None:intergenic 35.0%
TAGACTTAACTTCTTCTAGC+AGG - chr4_3:19204306-19204325 Msa0633570:intron 35.0%
TGCTTAATTAATGGTCACCA+TGG + chr4_3:19204436-19204455 None:intergenic 35.0%
TGGGACTGATGCTTAATTAA+TGG + chr4_3:19204445-19204464 None:intergenic 35.0%
ATATTGGGAAGGTCAAACTA+TGG + chr4_3:19204825-19204844 None:intergenic 35.0%
CTGGAATCTCAATATCAAGT+CGG + chr4_3:19204860-19204879 None:intergenic 35.0%
GGTCACATTAATGCTTAGTT+TGG - chr4_3:19205034-19205053 Msa0633570:intron 35.0%
GCAGTACTGCATTAATAGAT+TGG - chr4_3:19205113-19205132 Msa0633570:intron 35.0%
!! TGACCTAATACTACTTTTGC+AGG - chr4_3:19205514-19205533 Msa0633570:intron 35.0%
GAACCTGCAAAAGTAGTATT+AGG + chr4_3:19205520-19205539 None:intergenic 35.0%
GATAAGAAGGCGAAAATCAA+GGG - chr4_3:19205540-19205559 Msa0633570:CDS 35.0%
CAATAACTGCTGACAGAATA+AGG + chr4_3:19205570-19205589 None:intergenic 35.0%
!!! CTATTTACTTTTTAGGGACG+AGG - chr4_3:19205711-19205730 Msa0633570:five_prime_UTR 35.0%
TTTACAATCCACATTTGCCT+AGG - chr4_3:19205749-19205768 Msa0633570:five_prime_UTR 35.0%
CACGACAAATCTAGATTTGC+AGG - chr4_3:19200075-19200094 Msa0633570:exon 40.0%
TAGATTTGCAGGAATCAGGT+TGG - chr4_3:19200086-19200105 Msa0633570:exon 40.0%
AGATTTGCAGGAATCAGGTT+GGG - chr4_3:19200087-19200106 Msa0633570:exon 40.0%
ACGATGAATGCGATGAAAAG+GGG + chr4_3:19200219-19200238 None:intergenic 40.0%
GGAATGGAATGATTGATCTG+TGG - chr4_3:19200334-19200353 Msa0633570:CDS 40.0%
! GGTACTAGCTTATGAAGTAG+TGG - chr4_3:19200368-19200387 Msa0633570:CDS 40.0%
ATGAAGTAGTGGCATGAACA+CGG - chr4_3:19200379-19200398 Msa0633570:CDS 40.0%
CTTCTGATGAAATGCATGTC+CGG + chr4_3:19200956-19200975 None:intergenic 40.0%
AGAATTTACTAAGAGCGGGT+AGG - chr4_3:19201033-19201052 Msa0633570:intron 40.0%
GAATTTACTAAGAGCGGGTA+GGG - chr4_3:19201034-19201053 Msa0633570:intron 40.0%
! TTGAGCTTCAAAGTGTTTGC+AGG + chr4_3:19201067-19201086 None:intergenic 40.0%
! AACAATGCTTCATTGGGTTG+GGG - chr4_3:19201087-19201106 Msa0633570:intron 40.0%
ACTTTGAGCAACCATACTAG+TGG - chr4_3:19201172-19201191 Msa0633570:intron 40.0%
AGCAACCATACTAGTGGAAT+TGG - chr4_3:19201178-19201197 Msa0633570:intron 40.0%
ACGAGCATCATATAAGTGAG+AGG + chr4_3:19201251-19201270 None:intergenic 40.0%
GAACGGAAATGACATGACAT+AGG - chr4_3:19201319-19201338 Msa0633570:intron 40.0%
! TTTTCATAGTCAAGGCGTAG+CGG - chr4_3:19201362-19201381 Msa0633570:CDS 40.0%
GAAGTTCCCATTAGTAGAAG+TGG - chr4_3:19201832-19201851 Msa0633570:intron 40.0%
ACAAGTGCTTGGTTACTATG+AGG - chr4_3:19201960-19201979 Msa0633570:intron 40.0%
! GCCTTCTTATTGATTAGGCA+TGG - chr4_3:19202131-19202150 Msa0633570:intron 40.0%
GCCATGCCTAATCAATAAGA+AGG + chr4_3:19202135-19202154 None:intergenic 40.0%
ATTGATTAGGCATGGCAATG+GGG - chr4_3:19202139-19202158 Msa0633570:intron 40.0%
TTCAATTTCTCATCCCCGTT+GGG + chr4_3:19202239-19202258 None:intergenic 40.0%
ATTCAATTTCTCATCCCCGT+TGG + chr4_3:19202240-19202259 None:intergenic 40.0%
AATTATTCAATGCGGGGACA+GGG + chr4_3:19202304-19202323 None:intergenic 40.0%
AAATTATTCAATGCGGGGAC+AGG + chr4_3:19202305-19202324 None:intergenic 40.0%
!! TTTTACATTTGGGACGGGTT+TGG - chr4_3:19202512-19202531 Msa0633570:intron 40.0%
! TTTACATTTGGGACGGGTTT+GGG - chr4_3:19202513-19202532 Msa0633570:intron 40.0%
CGATTTCAAAACACGGGTAT+GGG + chr4_3:19202578-19202597 None:intergenic 40.0%
!!! CCATACCCGTGTTTTGAAAT+CGG - chr4_3:19202576-19202595 Msa0633570:intron 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG - chr4_3:19202577-19202596 Msa0633570:intron 40.0%
!!! ATACCCGTGTTTTGAAATCG+GGG - chr4_3:19202578-19202597 Msa0633570:intron 40.0%
TTTCCCCGATTTCAAAACAC+GGG + chr4_3:19202584-19202603 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG + chr4_3:19202614-19202633 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG - chr4_3:19202614-19202633 Msa0633570:intron 40.0%
GTGTTGGGATAATATGGCTA+TGG - chr4_3:19202682-19202701 Msa0633570:intron 40.0%
GGATTGGATTTCCATTTCCA+TGG + chr4_3:19202891-19202910 None:intergenic 40.0%
ATAGTTTCTCGAGCAAGGAT+TGG + chr4_3:19202907-19202926 None:intergenic 40.0%
ATCCTTGCTCGAGAAACTAT+TGG - chr4_3:19202907-19202926 Msa0633570:intron 40.0%
TTCTGTGTTACAGAAGTAGC+TGG + chr4_3:19202974-19202993 None:intergenic 40.0%
TGCAGTGTCCAAGAATATAC+AGG + chr4_3:19203176-19203195 None:intergenic 40.0%
CATGGGAGTTGAATCTAGAA+TGG - chr4_3:19203348-19203367 Msa0633570:intron 40.0%
GCAAGCAAAATCTAAATGCG+GGG - chr4_3:19203441-19203460 Msa0633570:intron 40.0%
CAAGCAAAATCTAAATGCGG+GGG - chr4_3:19203442-19203461 Msa0633570:intron 40.0%
! GGAGTTAGGCTGAGATTTTT+AGG - chr4_3:19203476-19203495 Msa0633570:intron 40.0%
GGACACAAATAAGGGAAGAA+CGG - chr4_3:19203672-19203691 Msa0633570:intron 40.0%
ATCCCCACCATCTATCAAAA+AGG - chr4_3:19203732-19203751 Msa0633570:intron 40.0%
! CTCCTTTTTGATAGATGGTG+GGG + chr4_3:19203737-19203756 None:intergenic 40.0%
! CTCTCCTTTTTGATAGATGG+TGG + chr4_3:19203739-19203758 None:intergenic 40.0%
! ATTCCCTCATGGGATTTTCA+CGG + chr4_3:19203820-19203839 None:intergenic 40.0%
! TTTTCACTGGATTCCCTCAT+GGG + chr4_3:19203830-19203849 None:intergenic 40.0%
! ATTTTCACTGGATTCCCTCA+TGG + chr4_3:19203831-19203850 None:intergenic 40.0%
AAGTTCAATTTGGCTAAGCC+GGG + chr4_3:19203874-19203893 None:intergenic 40.0%
AGAAATCATGGTCTGATGGT+AGG + chr4_3:19203909-19203928 None:intergenic 40.0%
GCAGCGAGATAAAGAAATCA+TGG + chr4_3:19203921-19203940 None:intergenic 40.0%
CATTGAGTTTATGTTCCCCT+TGG + chr4_3:19204176-19204195 None:intergenic 40.0%
GGGGAACATAAACTCAATGA+AGG - chr4_3:19204177-19204196 Msa0633570:intron 40.0%
! AAGGAACATGCAGAGCTTTT+AGG - chr4_3:19204196-19204215 Msa0633570:intron 40.0%
!!! CAGAGCTTTTAGGTTCTGTT+AGG - chr4_3:19204206-19204225 Msa0633570:intron 40.0%
TCACGTAATAACTGCATCCT+TGG + chr4_3:19204349-19204368 None:intergenic 40.0%
TTACATGAGACGTACTTCCA+TGG + chr4_3:19204384-19204403 None:intergenic 40.0%
TTGTTGCTCTGTATAGCTCA+TGG - chr4_3:19204497-19204516 Msa0633570:intron 40.0%
TGGGATCATCTCCATTGAAA+TGG - chr4_3:19204544-19204563 Msa0633570:intron 40.0%
TGTCATATAGCTAGGTGAAC+TGG - chr4_3:19204721-19204740 Msa0633570:intron 40.0%
TGTTTGTTCTTGCCTGCATT+TGG - chr4_3:19204770-19204789 Msa0633570:intron 40.0%
TTCCAGTATTCAAGCAGTGA+TGG - chr4_3:19204874-19204893 Msa0633570:intron 40.0%
TTCCATCACTGCTTGAATAC+TGG + chr4_3:19204879-19204898 None:intergenic 40.0%
CTGCATCTGTGCTCATTTAT+TGG - chr4_3:19205002-19205021 Msa0633570:intron 40.0%
AAGGAAAAGTGAGGCTTCTT+GGG - chr4_3:19205385-19205404 Msa0633570:intron 40.0%
! CTTTTGCAGGTTCGATAAGA+AGG - chr4_3:19205527-19205546 Msa0633570:CDS 40.0%
CGATAAGAAGGCGAAAATCA+AGG - chr4_3:19205539-19205558 Msa0633570:CDS 40.0%
AACACAAATATGAGGCTCCT+AGG + chr4_3:19205769-19205788 None:intergenic 40.0%
GATTTGTCGTGTCCCTCATT+CGG + chr4_3:19200066-19200085 None:intergenic 45.0%
CGATGAAAAGGGGAAAGGAA+TGG + chr4_3:19200209-19200228 None:intergenic 45.0%
GAATGCGATGAAAAGGGGAA+AGG + chr4_3:19200214-19200233 None:intergenic 45.0%
! GTATGTGATCTGGAGTGGAA+TGG - chr4_3:19200318-19200337 Msa0633570:CDS 45.0%
GATTGATCTGTGGCTGATGT+CGG - chr4_3:19200344-19200363 Msa0633570:CDS 45.0%
TTGTCACCACCTATGAAGCA+CGG + chr4_3:19200607-19200626 None:intergenic 45.0%
GGTGTCCAATTCCACTAGTA+TGG + chr4_3:19201186-19201205 None:intergenic 45.0%
AGTTTATGGATCCCCTGAAG+TGG - chr4_3:19201483-19201502 Msa0633570:CDS 45.0%
GTTTATGGATCCCCTGAAGT+GGG - chr4_3:19201484-19201503 Msa0633570:CDS 45.0%
GGTTAAGTTCCGATGAGCTT+TGG - chr4_3:19201520-19201539 Msa0633570:CDS 45.0%
TGCATTTGGCCAAAGCTCAT+CGG + chr4_3:19201532-19201551 None:intergenic 45.0%
TTAAGAATCGGGTATGGGGA+CGG + chr4_3:19202191-19202210 None:intergenic 45.0%
TTCAAAACACGGGTATGGGA+CGG + chr4_3:19202574-19202593 None:intergenic 45.0%
CCGATTTCAAAACACGGGTA+TGG + chr4_3:19202579-19202598 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG + chr4_3:19202615-19202634 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG - chr4_3:19202615-19202634 Msa0633570:intron 45.0%
GTCTTGGAAGTCCATGGAAA+TGG - chr4_3:19202877-19202896 Msa0633570:intron 45.0%
GTCCAATAGTTTCTCGAGCA+AGG + chr4_3:19202912-19202931 None:intergenic 45.0%
AGATGCAGCACATCTACTCA+TGG + chr4_3:19202945-19202964 None:intergenic 45.0%
CTGTAACACAGAAGTTGGCT+AGG - chr4_3:19202981-19203000 Msa0633570:intron 45.0%
TTGCTTGCAACACGTGAACT+TGG - chr4_3:19203231-19203250 Msa0633570:intron 45.0%
TGCTTGCAACACGTGAACTT+GGG - chr4_3:19203232-19203251 Msa0633570:intron 45.0%
ACAGTTGTCAGTTGTGAGTG+TGG - chr4_3:19203261-19203280 Msa0633570:intron 45.0%
CAGTTGTCAGTTGTGAGTGT+GGG - chr4_3:19203262-19203281 Msa0633570:intron 45.0%
CAGTTGTCAGTTGTGAGTGT+GGG + chr4_3:19203262-19203281 None:intergenic 45.0%
ACAGTTGTCAGTTGTGAGTG+TGG + chr4_3:19203261-19203280 None:intergenic 45.0%
TGCTTGCAACACGTGAACTT+GGG + chr4_3:19203232-19203251 None:intergenic 45.0%
TTGCTTGCAACACGTGAACT+TGG + chr4_3:19203231-19203250 None:intergenic 45.0%
CAAAATCTAAATGCGGGGGT+GGG - chr4_3:19203446-19203465 Msa0633570:intron 45.0%
TCTCATGTCGCATTTCCATC+TGG - chr4_3:19203705-19203724 Msa0633570:intron 45.0%
AATCCCGTGAAAATCCCATG+AGG - chr4_3:19203813-19203832 Msa0633570:intron 45.0%
ATCCCGTGAAAATCCCATGA+GGG - chr4_3:19203814-19203833 Msa0633570:intron 45.0%
! TTCCCTCATGGGATTTTCAC+GGG + chr4_3:19203819-19203838 None:intergenic 45.0%
GTTGTTTGCTTCAGGAGTTC+AGG - chr4_3:19204146-19204165 Msa0633570:intron 45.0%
AACTTCTTCTAGCAGGCATC+TGG - chr4_3:19204313-19204332 Msa0633570:intron 45.0%
CATCTGGTAGTATGTCACCA+AGG - chr4_3:19204329-19204348 Msa0633570:intron 45.0%
ATGAGACGTACTTCCATGGA+TGG + chr4_3:19204380-19204399 None:intergenic 45.0%
TGTCAGACGCACAACTTTCT+GGG + chr4_3:19204464-19204483 None:intergenic 45.0%
GCTATACAGAGCAACAAGCA+TGG + chr4_3:19204494-19204513 None:intergenic 45.0%
AAGTGCCATCAAGAGTTGAC+AGG - chr4_3:19204962-19204981 Msa0633570:intron 45.0%
ATGCAGCAGTGTCTAAAGAG+TGG + chr4_3:19204988-19205007 None:intergenic 45.0%
TCAAGCTACAAGAGCTGTCT+TGG - chr4_3:19205332-19205351 Msa0633570:intron 45.0%
CAAGCTACAAGAGCTGTCTT+GGG - chr4_3:19205333-19205352 Msa0633570:intron 45.0%
GCATTGTTTGGCGATGTTCA+AGG - chr4_3:19205366-19205385 Msa0633570:intron 45.0%
GCGATGTTCAAGGAAAAGTG+AGG - chr4_3:19205376-19205395 Msa0633570:intron 45.0%
CAAGGAAAAGTGAGGCTTCT+TGG - chr4_3:19205384-19205403 Msa0633570:intron 45.0%
AGGAAAAGTGAGGCTTCTTG+GGG - chr4_3:19205386-19205405 Msa0633570:intron 45.0%
CGAGCAAGCTACGAATAATG+GGG + chr4_3:19205419-19205438 None:intergenic 45.0%
CCGAGCAAGCTACGAATAAT+GGG + chr4_3:19205420-19205439 None:intergenic 45.0%
!! CCCATTATTCGTAGCTTGCT+CGG - chr4_3:19205417-19205436 Msa0633570:intron 45.0%
ACCGAGCAAGCTACGAATAA+TGG + chr4_3:19205421-19205440 None:intergenic 45.0%
TGCGCAGAGTAAAGAGAGTG+TGG + chr4_3:19200017-19200036 None:intergenic 50.0%
!! TTTGCAGGAATCAGGTTGGG+AGG - chr4_3:19200090-19200109 Msa0633570:exon 50.0%
AGGTTGGGAGGAACTTCGTA+AGG - chr4_3:19200102-19200121 Msa0633570:CDS 50.0%
! AAGGAAGCGCGTAAGATCGA+AGG - chr4_3:19200121-19200140 Msa0633570:CDS 50.0%
!! CTCGGTGCTAGATTCACTCA+AGG - chr4_3:19200178-19200197 Msa0633570:intron 50.0%
GGTGCTAGATTCACTCAAGG+AGG - chr4_3:19200181-19200200 Msa0633570:intron 50.0%
ACACGACACTTGTCAGACAC+CGG + chr4_3:19200500-19200519 None:intergenic 50.0%
CACCTATGAAGCACGGATAG+CGG + chr4_3:19200600-19200619 None:intergenic 50.0%
GTGTTAGTGTCCTGTCAGTG+TGG - chr4_3:19200916-19200935 Msa0633570:intron 50.0%
CTGTCAGTGTGGACATGTGT+CGG - chr4_3:19200927-19200946 Msa0633570:intron 50.0%
TTTACTAAGAGCGGGTAGGG+TGG - chr4_3:19201037-19201056 Msa0633570:intron 50.0%
!! CTTCATTGGGTTGGGGTTAG+AGG - chr4_3:19201094-19201113 Msa0633570:intron 50.0%
GGCGCTTGTAATAGAGTGCA+AGG - chr4_3:19201407-19201426 Msa0633570:intron 50.0%
CCTCACGATCAATCCAACGA+TGG + chr4_3:19201453-19201472 None:intergenic 50.0%
CCATCGTTGGATTGATCGTG+AGG - chr4_3:19201450-19201469 Msa0633570:intron 50.0%
TCGTTGGATTGATCGTGAGG+TGG - chr4_3:19201453-19201472 Msa0633570:intron 50.0%
GAGGTGGCGTGAAGAGTTTA+TGG - chr4_3:19201469-19201488 Msa0633570:intron 50.0%
GTGTGGAAATCCCACTTCAG+GGG + chr4_3:19201497-19201516 None:intergenic 50.0%
CGTGTGGAAATCCCACTTCA+GGG + chr4_3:19201498-19201517 None:intergenic 50.0%
CCTGAAGTGGGATTTCCACA+CGG - chr4_3:19201496-19201515 Msa0633570:CDS 50.0%
ATCGGAACTTAACCTCCGTG+TGG + chr4_3:19201514-19201533 None:intergenic 50.0%
GCATGCGCTAAGTGTGTGTT+TGG + chr4_3:19201777-19201796 None:intergenic 50.0%
ACACACACTTAGCGCATGCT+TGG - chr4_3:19201778-19201797 Msa0633570:intron 50.0%
TAAGAATCGGGTATGGGGAC+GGG + chr4_3:19202190-19202209 None:intergenic 50.0%
TTGGGTATGGGTAGGGTAAC+GGG + chr4_3:19202221-19202240 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAA+CGG + chr4_3:19202222-19202241 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG - chr4_3:19202221-19202240 Msa0633570:intron 50.0%
TTACCCTACCCATACCCAAC+GGG - chr4_3:19202222-19202241 Msa0633570:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG + chr4_3:19202233-19202252 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG + chr4_3:19202234-19202253 None:intergenic 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG - chr4_3:19202518-19202537 Msa0633570:intron 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG - chr4_3:19202519-19202538 Msa0633570:intron 50.0%
ACGGGTTTGGGTATGGGTTT+GGG - chr4_3:19202525-19202544 Msa0633570:intron 50.0%
! TTTGGGTATGGGTTTGGGGT+GGG - chr4_3:19202530-19202549 Msa0633570:intron 50.0%
TCAAAACACGGGTATGGGAC+GGG + chr4_3:19202573-19202592 None:intergenic 50.0%
CTGGGTTTGGGTATGGGTAT+GGG + chr4_3:19202608-19202627 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTA+TGG + chr4_3:19202609-19202628 None:intergenic 50.0%
ACCCAAACCCAGTCAAAACG+GGG - chr4_3:19202616-19202635 Msa0633570:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG + chr4_3:19202620-19202639 None:intergenic 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG + chr4_3:19202621-19202640 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG + chr4_3:19202626-19202645 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG - chr4_3:19202633-19202652 Msa0633570:intron 50.0%
CGGGGAAAACCCGTCAAATT+GGG - chr4_3:19202634-19202653 Msa0633570:intron 50.0%
GGGGAAAACCCGTCAAATTG+GGG - chr4_3:19202635-19202654 Msa0633570:intron 50.0%
ATGGTGGCTCACCATCTGTT+GGG - chr4_3:19202846-19202865 Msa0633570:CDS 50.0%
CATGGACTTCCAAGACCTAC+TGG + chr4_3:19202873-19202892 None:intergenic 50.0%
CAGTAGGTCTTGGAAGTCCA+TGG - chr4_3:19202871-19202890 Msa0633570:intron 50.0%
AGTAGATGTGCTGCATCTGC+TGG - chr4_3:19202947-19202966 Msa0633570:intron 50.0%
TCAGTTGTGAGTGTGGGTGT+TGG + chr4_3:19203268-19203287 None:intergenic 50.0%
GCAAAATCTAAATGCGGGGG+TGG - chr4_3:19203445-19203464 Msa0633570:intron 50.0%
! ATGGTGGGGATTTCACCAGA+TGG + chr4_3:19203723-19203742 None:intergenic 50.0%
CAATTTGGCTAAGCCGGGAA+TGG + chr4_3:19203869-19203888 None:intergenic 50.0%
AGACGTACTTCCATGGATGG+AGG + chr4_3:19204377-19204396 None:intergenic 50.0%
CTGTCAGACGCACAACTTTC+TGG + chr4_3:19204465-19204484 None:intergenic 50.0%
AGTGGCCTGTCAACTCTTGA+TGG + chr4_3:19204970-19204989 None:intergenic 50.0%
AGCTGTCTTGGGTTCTCAGA+GGG - chr4_3:19205344-19205363 Msa0633570:intron 50.0%
!! GGTTCTCAGAGGGCATTGTT+TGG - chr4_3:19205354-19205373 Msa0633570:intron 50.0%
!! TCGTAGCTTGCTCGGTATGT+TGG - chr4_3:19205425-19205444 Msa0633570:intron 50.0%
ATGAGGCTCCTAGGCAAATG+TGG + chr4_3:19205760-19205779 None:intergenic 50.0%
TGATCTGTGGCTGATGTCGG+TGG - chr4_3:19200347-19200366 Msa0633570:CDS 55.0%
CACGACACTTGTCAGACACC+GGG + chr4_3:19200499-19200518 None:intergenic 55.0%
GTCCGCTATCCGTGCTTCAT+AGG - chr4_3:19200595-19200614 Msa0633570:intron 55.0%
CGCTATCCGTGCTTCATAGG+TGG - chr4_3:19200598-19200617 Msa0633570:intron 55.0%
CGACACATGTCCACACTGAC+AGG + chr4_3:19200929-19200948 None:intergenic 55.0%
TGTGGACATGTGTCGGACAC+CGG - chr4_3:19200934-19200953 Msa0633570:intron 55.0%
! GTCAAGGCGTAGCGGTCTTT+TGG - chr4_3:19201370-19201389 Msa0633570:CDS 55.0%
! AGGCGTAGCGGTCTTTTGGT+AGG - chr4_3:19201374-19201393 Msa0633570:CDS 55.0%
TGCAAGGAATGCACCACACG+AGG - chr4_3:19201423-19201442 Msa0633570:intron 55.0%
AAGGAATGCACCACACGAGG+TGG - chr4_3:19201426-19201445 Msa0633570:intron 55.0%
CCGTGTGGAAATCCCACTTC+AGG + chr4_3:19201499-19201518 None:intergenic 55.0%
GAAGTGGGATTTCCACACGG+AGG - chr4_3:19201499-19201518 Msa0633570:CDS 55.0%
GATTAGGCATGGCAATGGGG+CGG - chr4_3:19202142-19202161 Msa0633570:intron 55.0%
ATTAGGCATGGCAATGGGGC+GGG - chr4_3:19202143-19202162 Msa0633570:intron 55.0%
AAGAATCGGGTATGGGGACG+GGG + chr4_3:19202189-19202208 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG - chr4_3:19202223-19202242 Msa0633570:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG + chr4_3:19202228-19202247 None:intergenic 55.0%
ATTCAATGCGGGGACAGGGA+TGG + chr4_3:19202300-19202319 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+TGG - chr4_3:19202524-19202543 Msa0633570:intron 55.0%
CGGGTTTGGGTATGGGTTTG+GGG - chr4_3:19202526-19202545 Msa0633570:intron 55.0%
GTTTGGGTATGGGTTTGGGG+TGG - chr4_3:19202529-19202548 Msa0633570:intron 55.0%
!! GGGACGGGTAACGGGTATAT+AGG + chr4_3:19202558-19202577 None:intergenic 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG + chr4_3:19202627-19202646 None:intergenic 55.0%
! GATGGTGGCTCACCATCTGT+TGG - chr4_3:19202845-19202864 Msa0633570:CDS 55.0%
CACCATCTGTTGGGTCCAGT+AGG - chr4_3:19202855-19202874 Msa0633570:CDS 55.0%
GACCTACTGGACCCAACAGA+TGG + chr4_3:19202860-19202879 None:intergenic 55.0%
CTGTTGGGTCCAGTAGGTCT+TGG - chr4_3:19202861-19202880 Msa0633570:CDS 55.0%
AAATGCGGGGGTGGGAATCA+TGG - chr4_3:19203454-19203473 Msa0633570:intron 55.0%
AATGCGGGGGTGGGAATCAT+GGG - chr4_3:19203455-19203474 Msa0633570:intron 55.0%
GGGTGGGAATCATGGGAGTT+AGG - chr4_3:19203462-19203481 Msa0633570:intron 55.0%
TCCAGTGAAAATCCCACCGC+AGG - chr4_3:19203839-19203858 Msa0633570:intron 55.0%
! TCCTGCGGTGGGATTTTCAC+TGG + chr4_3:19203843-19203862 None:intergenic 55.0%
! GGGAATGGATTTCCTGCGGT+GGG + chr4_3:19203854-19203873 None:intergenic 55.0%
CACCGCAGGAAATCCATTCC+CGG - chr4_3:19203853-19203872 Msa0633570:intron 55.0%
! AGCCGGGAATGGATTTCCTG+CGG + chr4_3:19203858-19203877 None:intergenic 55.0%
TCAGGAGTTCAGGCGTACCA+AGG - chr4_3:19204156-19204175 Msa0633570:intron 55.0%
CAGGAGTTCAGGCGTACCAA+GGG - chr4_3:19204157-19204176 Msa0633570:intron 55.0%
AGGAGTTCAGGCGTACCAAG+GGG - chr4_3:19204158-19204177 Msa0633570:intron 55.0%
GAGCTGTCTTGGGTTCTCAG+AGG - chr4_3:19205343-19205362 Msa0633570:intron 55.0%
CAACGATGGTCCACCTCGTG+TGG + chr4_3:19201439-19201458 None:intergenic 60.0%
CACACGAGGTGGACCATCGT+TGG - chr4_3:19201437-19201456 Msa0633570:intron 60.0%
TTAGGCATGGCAATGGGGCG+GGG - chr4_3:19202144-19202163 Msa0633570:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG + chr4_3:19202229-19202248 None:intergenic 60.0%
ACGGGTATGGGACGGGTAAC+GGG + chr4_3:19202566-19202585 None:intergenic 60.0%
CACGGGTATGGGACGGGTAA+CGG + chr4_3:19202567-19202586 None:intergenic 60.0%
! CGGGAATGGATTTCCTGCGG+TGG + chr4_3:19203855-19203874 None:intergenic 60.0%
CGTGAGAGAGCCTCCATCCA+TGG - chr4_3:19204364-19204383 Msa0633570:intron 60.0%
GCACGGACACAGACGTGTCC+CGG - chr4_3:19200478-19200497 Msa0633570:intron 65.0%
ATCGGGTATGGGGACGGGGA+AGG + chr4_3:19202185-19202204 None:intergenic 65.0%
AATCCCATCCCCGTCCCCGA+CGG - chr4_3:19202257-19202276 Msa0633570:intron 65.0%
ATACCCGAACCCGTCGGGGA+CGG + chr4_3:19202270-19202289 None:intergenic 65.0%
AGGGATACCCGAACCCGTCG+GGG + chr4_3:19202274-19202293 None:intergenic 65.0%
CAGGGATACCCGAACCCGTC+GGG + chr4_3:19202275-19202294 None:intergenic 65.0%
GCAGGGATACCCGAACCCGT+CGG + chr4_3:19202276-19202295 None:intergenic 65.0%
GCATGGCAATGGGGCGGGGT+GGG - chr4_3:19202148-19202167 Msa0633570:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG - chr4_3:19202149-19202168 Msa0633570:intron 70.0%
ATCCCATCCCCGTCCCCGAC+GGG - chr4_3:19202258-19202277 Msa0633570:intron 70.0%
AACCCGTCGGGGACGGGGAT+GGG + chr4_3:19202263-19202282 None:intergenic 70.0%
! ATCCCCGTCCCCGACGGGTT+CGG - chr4_3:19202263-19202282 Msa0633570:intron 70.0%
TACCCGAACCCGTCGGGGAC+GGG + chr4_3:19202269-19202288 None:intergenic 70.0%
GCGGGGACAGGGATGGAGCA+GGG + chr4_3:19202293-19202312 None:intergenic 70.0%
TGCGGGGACAGGGATGGAGC+AGG + chr4_3:19202294-19202313 None:intergenic 70.0%
GGCATGGCAATGGGGCGGGG+TGG - chr4_3:19202147-19202166 Msa0633570:intron 75.0%
GCAATGGGGCGGGGTGGGGA+CGG - chr4_3:19202153-19202172 Msa0633570:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG - chr4_3:19202154-19202173 Msa0633570:intron 75.0%
GAACCCGTCGGGGACGGGGA+TGG + chr4_3:19202264-19202283 None:intergenic 75.0%
! TCCCCGTCCCCGACGGGTTC+GGG - chr4_3:19202264-19202283 Msa0633570:intron 75.0%
ACCCGAACCCGTCGGGGACG+GGG + chr4_3:19202268-19202287 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 19199914 19205811 19199914 ID=Msa0633570;Name=Msa0633570
chr4_3 mRNA 19199914 19205811 19199914 ID=Msa0633570-mRNA-1;Parent=Msa0633570;Name=Msa0633570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=153|1|1|1|1|1|6|178|240
chr4_3 exon 19199914 19200189 19199914 ID=Msa0633570-mRNA-1:exon:5252;Parent=Msa0633570-mRNA-1
chr4_3 exon 19200287 19200416 19200287 ID=Msa0633570-mRNA-1:exon:5251;Parent=Msa0633570-mRNA-1
chr4_3 exon 19201326 19201397 19201326 ID=Msa0633570-mRNA-1:exon:5250;Parent=Msa0633570-mRNA-1
chr4_3 exon 19201476 19201565 19201476 ID=Msa0633570-mRNA-1:exon:5249;Parent=Msa0633570-mRNA-1
chr4_3 exon 19202692 19202888 19202692 ID=Msa0633570-mRNA-1:exon:5248;Parent=Msa0633570-mRNA-1
chr4_3 exon 19205523 19205811 19205523 ID=Msa0633570-mRNA-1:exon:5247;Parent=Msa0633570-mRNA-1
chr4_3 five_prime_UTR 19205659 19205811 19205659 ID=Msa0633570-mRNA-1:five_prime_utr;Parent=Msa0633570-mRNA-1
chr4_3 CDS 19205523 19205658 19205523 ID=Msa0633570-mRNA-1:cds;Parent=Msa0633570-mRNA-1
chr4_3 CDS 19202692 19202888 19202692 ID=Msa0633570-mRNA-1:cds;Parent=Msa0633570-mRNA-1
chr4_3 CDS 19201476 19201565 19201476 ID=Msa0633570-mRNA-1:cds;Parent=Msa0633570-mRNA-1
chr4_3 CDS 19201326 19201397 19201326 ID=Msa0633570-mRNA-1:cds;Parent=Msa0633570-mRNA-1
chr4_3 CDS 19200287 19200416 19200287 ID=Msa0633570-mRNA-1:cds;Parent=Msa0633570-mRNA-1
chr4_3 CDS 19200092 19200189 19200092 ID=Msa0633570-mRNA-1:cds;Parent=Msa0633570-mRNA-1
chr4_3 three_prime_UTR 19199914 19200091 19199914 ID=Msa0633570-mRNA-1:three_prime_utr;Parent=Msa0633570-mRNA-1
Gene Sequence

>Msa0633570

ATGAGGGACACGACAAATCTAGATTTGCAGGAATCAGGTTGGGAGGAACTTCGTAAGGAAGCGCGTAAGATCGAAGGCGATCTCGACGTTAAGCTTTCTTCTTACGCTAAACTCGGTGCTAGATTCACTCAAGGAGGTTATGTGGATGGTGGCTCACCATCTGTTGGGTCCAGTAGGTCTTGGAAGTCCATGGAAATGGAAATCCAATCCTTGCTCGAGAAACTATTGGACATAAATGATTCCATGAGTAGATGTGCTGCATCTGCTGGACCAGCTACTTCTGTAACACAGAAGTTGGCTAGGCACAGAGATATTCTTCATGAGTTTACCCAGGAGTTCAGGCGTACCAAGGGGAACATAAACTCAATGAAGGAACATGCAGAGCTTTTAGGTTCTGTTAGGGATGATATTTCGGACTTTAAGGCATCTGGTAGTATGTCACCAAGGATGCAGTTATTACGTGAGAGAGCCTCCATCCATGGAAGTACGTCTCATATAGATGAAGTTATTAGTCAAGCTCAAGCTACAAGAGCTGTCTTGGGTTCTCAGAGGGCATTGTTTGGCGATGTTCAAGGAAAAGTGAGGCTTCTTGGGGACAAGTTCCCCATTATTCGTAGCTTGCTCGGTTCGATAAGAAGGCGAAAATCAAGGGATACCCTTATTCTGTCAGCAGTTATTGCTGCTTGTACCTTGTTTCTCATCATTTATTGGCTTTCAAAGTAA

Protein sequence

>Msa0633570

MRDTTNLDLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDGGSPSVGSSRSWKSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRTKGNINSMKEHAELLGSVRDDISDFKASGSMSPRMQLLRERASIHGSTSHIDEVISQAQATRAVLGSQRALFGDVQGKVRLLGDKFPIIRSLLGSIRRRKSRDTLILSAVIAACTLFLIIYWLSK*