AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0781270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781270 MtrunA17_Chr5g0440971 95.397 239 11 0 1 239 1 239 9.59e-171 469
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781270 AT2G26970.1 60.593 236 78 4 1 236 1 221 1.01e-101 295
Msa0781270 AT2G26970.2 58.898 236 78 2 1 236 1 217 5.28e-101 293

Find 65 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAGATCTCCGCCAATTT+TGG 0.229266 5_2:-63734966 None:intergenic
GTCGGGTCGGGCCATGGGTT+TGG 0.234261 5_2:-63731241 None:intergenic
GCAGAAATACATGCCAAAAT+TGG 0.239555 5_2:+63734953 Msa0781270:intron
CAACCTCCTTCTCTTCCTTC+TGG 0.262802 5_2:+63731451 Msa0781270:CDS
ATCCATATTTGTCTGATTAC+AGG 0.267713 5_2:+63732717 Msa0781270:CDS
TCGGGTCGGGCCATGGGTTT+GGG 0.276053 5_2:-63731240 None:intergenic
TGATGGGTCGGGTCGGGCCA+TGG 0.296163 5_2:-63731247 None:intergenic
CGTTATCATTTCTTGACCTT+TGG 0.326942 5_2:-63735392 None:intergenic
GGAGATTGCTTGTATAATTA+CGG 0.329627 5_2:+63732891 Msa0781270:CDS
TATTGAAGTGGATAGAATTC+TGG 0.339978 5_2:+63732870 Msa0781270:CDS
ATTACAGGTTACCTCTTGTC+TGG 0.356384 5_2:+63732732 Msa0781270:CDS
AATATATACCTCCACCGATT+TGG 0.364407 5_2:-63732926 None:intergenic
GAATTCGTTAAGAAACATAT+TGG 0.379765 5_2:+63734659 Msa0781270:CDS
GTTTGATGTATGACCAAATC+AGG 0.394324 5_2:-63733676 None:intergenic
AGGAAGAGAAGGAGGTTGAA+TGG 0.397608 5_2:-63731446 None:intergenic
TGAAAGAGAAGCTGAAGAAC+AGG 0.404389 5_2:+63733923 Msa0781270:CDS
ATCCTAAATATAAAATTTGT+CGG 0.408088 5_2:+63731206 Msa0781270:five_prime_UTR
AACCTGTAATCAGACAAATA+TGG 0.412327 5_2:-63732719 None:intergenic
TGGCGGTGATGGGTCGGGTC+GGG 0.419793 5_2:-63731253 None:intergenic
GATGGGTCGGGTCGGGCCAT+GGG 0.436162 5_2:-63731246 None:intergenic
AAAAGTGGCGGTGATGGGTC+GGG 0.440550 5_2:-63731258 None:intergenic
AGAGGCAAAAGTGGCGGTGA+TGG 0.450311 5_2:-63731264 None:intergenic
CAAAAGTGGCGGTGATGGGT+CGG 0.460291 5_2:-63731259 None:intergenic
TCCTAAATATAAAATTTGTC+GGG 0.462721 5_2:+63731207 Msa0781270:five_prime_UTR
CTCTTTCAAGTATTCCACTT+TGG 0.465585 5_2:-63731342 None:intergenic
GTGGCGGTGATGGGTCGGGT+CGG 0.481421 5_2:-63731254 None:intergenic
TCTCAGCTCTTTGCATTCGC+TGG 0.486307 5_2:+63735015 Msa0781270:CDS
CACTCACTCAGAGGCAAAAG+TGG 0.487879 5_2:-63731273 None:intergenic
TGCATTCGCTGGTATCCTAA+AGG 0.490721 5_2:+63735026 Msa0781270:CDS
GGATGGAAACTTAACCAAAT+CGG 0.511103 5_2:+63732912 Msa0781270:CDS
AGTGGTGGAAAGAAAGCTAA+TGG 0.513081 5_2:+63732653 Msa0781270:CDS
GGCAGGAAATTCGATATATG+TGG 0.518560 5_2:+63734703 Msa0781270:CDS
AATATCAAGATCTATTTGCT+AGG 0.521798 5_2:-63735480 None:intergenic
GAGGCAAAAGTGGCGGTGAT+GGG 0.530528 5_2:-63731263 None:intergenic
TGTGGATTTACAATATATGA+AGG 0.536829 5_2:+63734721 Msa0781270:CDS
TAAGGAGTGCCTTGACAGGA+TGG 0.539187 5_2:+63733699 Msa0781270:CDS
TTTCTTGGTGCAGGTAGTGG+TGG 0.539229 5_2:+63732638 Msa0781270:intron
AGGTACTTACAAACCTCTCT+TGG 0.539546 5_2:+63734682 Msa0781270:CDS
AAACTAAGGAGTGCCTTGAC+AGG 0.541640 5_2:+63733695 Msa0781270:CDS
ACCTCTTGTCTGGATTGACT+TGG 0.542563 5_2:+63732742 Msa0781270:CDS
TTTGGTCATACATCAAACTA+AGG 0.543284 5_2:+63733681 Msa0781270:CDS
GAAAAGAAACTGCGCCAAAG+TGG 0.544844 5_2:+63731328 Msa0781270:five_prime_UTR
GGCGGAGATCTTCTCTCATG+TGG 0.546349 5_2:+63734974 Msa0781270:CDS
GCCTTGACAGGATGGGAGAA+TGG 0.548650 5_2:+63733707 Msa0781270:CDS
GAAATACATGCCAAAATTGG+CGG 0.553319 5_2:+63734956 Msa0781270:intron
ATTGCTTGTATAATTACGGA+TGG 0.553379 5_2:+63732895 Msa0781270:CDS
AGCATACCAGAAGGAAGAGA+AGG 0.556437 5_2:-63731457 None:intergenic
ACTTACAAACCTCTCTTGGC+AGG 0.564752 5_2:+63734686 Msa0781270:CDS
TGGATTGACTTGGAAATGAC+TGG 0.570107 5_2:+63732752 Msa0781270:CDS
TTCGTTAAGAAACATATTGG+AGG 0.577409 5_2:+63734662 Msa0781270:CDS
ATCGAATTTCCTGCCAAGAG+AGG 0.584584 5_2:-63734695 None:intergenic
AAACTTAACCAAATCGGTGG+AGG 0.589283 5_2:+63732918 Msa0781270:CDS
TCCAAGTCAATCCAGACAAG+AGG 0.594779 5_2:-63732743 None:intergenic
AAAAGTCATCACGCTGCTAG+TGG 0.595217 5_2:+63733733 Msa0781270:CDS
AAGGAGTGCCTTGACAGGAT+GGG 0.595908 5_2:+63733700 Msa0781270:CDS
ACCATTCTCCCATCCTGTCA+AGG 0.602681 5_2:-63733708 None:intergenic
TGATATTAGAGAAAGTATTG+AGG 0.606819 5_2:+63735337 Msa0781270:CDS
TGCAGGTTTGAATATTGAAG+TGG 0.613241 5_2:+63732858 Msa0781270:intron
TTACATCTAACCCAAACCCA+TGG 0.622280 5_2:+63731230 Msa0781270:five_prime_UTR
ATACCAGAAGGAAGAGAAGG+AGG 0.632940 5_2:-63731454 None:intergenic
TGGAAACTTAACCAAATCGG+TGG 0.635295 5_2:+63732915 Msa0781270:CDS
TGAGGAACTTAAGTACTACA+AGG 0.639860 5_2:+63735355 Msa0781270:CDS
ATAAACTTGTCATAACAATG+AGG 0.654254 5_2:-63735454 None:intergenic
TACATCACTCACTCACTCAG+AGG 0.668659 5_2:-63731282 None:intergenic
TCACTCAGAGGCAAAAGTGG+CGG 0.683278 5_2:-63731270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCCTAAATATAAAATTTGT+CGG + chr5_2:63731206-63731225 Msa0781270:five_prime_UTR 15.0%
!!! TCACTTCTTTTTTTATTATT+AGG + chr5_2:63731511-63731530 Msa0781270:intron 15.0%
!!! CACTTCTTTTTTTATTATTA+GGG + chr5_2:63731512-63731531 Msa0781270:intron 15.0%
!!! AAAAATTCCATTTTTTACTT+TGG + chr5_2:63731675-63731694 Msa0781270:intron 15.0%
!! AAAAGATAGAAAATCTTTAT+TGG + chr5_2:63731897-63731916 Msa0781270:intron 15.0%
!!! ACAATCTTCTAAAAAAAAAA+TGG - chr5_2:63732979-63732998 None:intergenic 15.0%
!! TCTACATATCAATTTATTTA+AGG - chr5_2:63733281-63733300 None:intergenic 15.0%
!!! TACATATTTGTATCTATTTT+AGG + chr5_2:63733591-63733610 Msa0781270:intron 15.0%
!!! ACATATTTGTATCTATTTTA+GGG + chr5_2:63733652-63733671 Msa0781270:intron 15.0%
!!! CTTACATTTCTATTTTAAAT+AGG + chr5_2:63733999-63734018 Msa0781270:intron 15.0%
!! TCCTAAATATAAAATTTGTC+GGG + chr5_2:63731207-63731226 Msa0781270:five_prime_UTR 20.0%
!! ACAAATTAGAAGAAGAAAAA+TGG + chr5_2:63731372-63731391 Msa0781270:exon 20.0%
!! AGATTTACCAAAGTAAAAAA+TGG - chr5_2:63731685-63731704 None:intergenic 20.0%
!! AAATTTGATAAAAATGACCA+AGG + chr5_2:63732094-63732113 Msa0781270:intron 20.0%
!! TTCAATAATTTAAGAACGAA+CGG - chr5_2:63732160-63732179 None:intergenic 20.0%
!! TCGTTCTTAAATTATTGAAT+TGG + chr5_2:63732161-63732180 Msa0781270:intron 20.0%
!! AAATTATTGAATTGGAGAAT+AGG + chr5_2:63732169-63732188 Msa0781270:intron 20.0%
!! TCTACATATCAATTTATTGA+AGG - chr5_2:63733217-63733236 None:intergenic 20.0%
!! GTGATATTATGAAATTTATC+AGG + chr5_2:63733450-63733469 Msa0781270:intron 20.0%
!!! AGTAAAAAACTGATTTAGTA+TGG + chr5_2:63733616-63733635 Msa0781270:intron 20.0%
!!! TAATTTGCATTTTGATTTGT+TGG + chr5_2:63733780-63733799 Msa0781270:intron 20.0%
!! AAAGGGATTTAATAATGTTA+AGG - chr5_2:63733810-63733829 None:intergenic 20.0%
!! AATTCAACAGGAAAAAAAAA+GGG - chr5_2:63733827-63733846 None:intergenic 20.0%
!! TAAGAATAAGATAGATGAAA+TGG + chr5_2:63734080-63734099 Msa0781270:intron 20.0%
!! ATTAAGTTCATAAAGAATAC+TGG + chr5_2:63734168-63734187 Msa0781270:intron 20.0%
!!! TATCTCTTATTGATGATTTT+AGG - chr5_2:63734415-63734434 None:intergenic 20.0%
!!! ATAATATGATTTGCAATGAA+TGG - chr5_2:63734554-63734573 None:intergenic 20.0%
!! CAAATCATATTATGAGATAA+TGG + chr5_2:63734561-63734580 Msa0781270:intron 20.0%
!! ACAAATACACTACTTTATTA+TGG - chr5_2:63734758-63734777 None:intergenic 20.0%
!!! TCCAGAATTAAATATACTTT+TGG + chr5_2:63735166-63735185 Msa0781270:intron 20.0%
!!! TCCAAAAGTATATTTAATTC+TGG - chr5_2:63735170-63735189 None:intergenic 20.0%
!!! TTGATATTGAAGTGTATTTT+TGG + chr5_2:63735495-63735514 Msa0781270:three_prime_UTR 20.0%
!! ACCCGACAAATTTTATATTT+AGG - chr5_2:63731211-63731230 None:intergenic 25.0%
!!! AAAGCTTGTTAACTCTTTTT+CGG + chr5_2:63731396-63731415 Msa0781270:CDS 25.0%
! ATTGAATAACAGGGATAAAA+GGG - chr5_2:63731489-63731508 None:intergenic 25.0%
! GAAAATAAAGTAAACCAACA+TGG - chr5_2:63731640-63731659 None:intergenic 25.0%
!!! TTTGGTAAATCTTTAAAGCA+CGG + chr5_2:63731693-63731712 Msa0781270:intron 25.0%
!!! TTTTTCACCTATTTTGATCA+GGG - chr5_2:63731937-63731956 None:intergenic 25.0%
! TGATCAAAATAGGTGAAAAA+CGG + chr5_2:63731937-63731956 Msa0781270:intron 25.0%
!!! GCTTTTTTCAGTTTTGAATT+AGG + chr5_2:63732061-63732080 Msa0781270:intron 25.0%
! TCAATAATTTAAGAACGAAC+GGG - chr5_2:63732159-63732178 None:intergenic 25.0%
! AAGTAGTTAAATAGGTGATT+TGG + chr5_2:63732253-63732272 Msa0781270:intron 25.0%
!!! ATTACCAGTTCTAAAATTTC+TGG + chr5_2:63732543-63732562 Msa0781270:intron 25.0%
!!! TTATTTCCTCTGTTTTTCTA+TGG + chr5_2:63733073-63733092 Msa0781270:intron 25.0%
!!! TATTTCCTCTGTTTTTCTAT+GGG + chr5_2:63733074-63733093 Msa0781270:intron 25.0%
! GAAGGATCATATAAGTTTAA+GGG - chr5_2:63733199-63733218 None:intergenic 25.0%
! TGAAGGATCATATAAGTTTA+AGG - chr5_2:63733200-63733219 None:intergenic 25.0%
! CAATTCAACAGGAAAAAAAA+AGG - chr5_2:63733828-63733847 None:intergenic 25.0%
! CATTCAAAATTCAATTCAAC+AGG - chr5_2:63733839-63733858 None:intergenic 25.0%
!! CTGTTGAATTGAATTTTGAA+TGG + chr5_2:63733837-63733856 Msa0781270:intron 25.0%
!!! TTTTGAATGGTATTGACTAA+TGG + chr5_2:63733850-63733869 Msa0781270:intron 25.0%
!! TAATGGTTTTCAATGAATGT+AGG + chr5_2:63733867-63733886 Msa0781270:intron 25.0%
!! ATGTAATTAGCTCTTGATAT+GGG - chr5_2:63734362-63734381 None:intergenic 25.0%
!! AATGTAATTAGCTCTTGATA+TGG - chr5_2:63734363-63734382 None:intergenic 25.0%
!!! GATGATTTTAGGAAGAAATT+TGG - chr5_2:63734404-63734423 None:intergenic 25.0%
!! CATATTATGAGATAATGGTT+TGG + chr5_2:63734566-63734585 Msa0781270:intron 25.0%
! GAATTCGTTAAGAAACATAT+TGG + chr5_2:63734659-63734678 Msa0781270:CDS 25.0%
! TGTGGATTTACAATATATGA+AGG + chr5_2:63734721-63734740 Msa0781270:CDS 25.0%
!! TACAATATATGAAGGTATAG+AGG + chr5_2:63734729-63734748 Msa0781270:intron 25.0%
! CATTTCAACAAAGGAATAAT+AGG - chr5_2:63734870-63734889 None:intergenic 25.0%
!! GTATTTAATTTCTCACCTTT+AGG - chr5_2:63735044-63735063 None:intergenic 25.0%
!! TTTTTCGTAAGAACTACTAT+CGG - chr5_2:63735205-63735224 None:intergenic 25.0%
! AAAATTTCTGTGTTCTCAAA+AGG - chr5_2:63735244-63735263 None:intergenic 25.0%
!!! TGATATTAGAGAAAGTATTG+AGG + chr5_2:63735337-63735356 Msa0781270:CDS 25.0%
! ATAAACTTGTCATAACAATG+AGG - chr5_2:63735457-63735476 None:intergenic 25.0%
! AATATCAAGATCTATTTGCT+AGG - chr5_2:63735483-63735502 None:intergenic 25.0%
!!! CATAAGCAAAACACTTTTTT+GGG - chr5_2:63735618-63735637 None:intergenic 25.0%
GATTGAATAACAGGGATAAA+AGG - chr5_2:63731490-63731509 None:intergenic 30.0%
GAAGTGAAGATTGAATAACA+GGG - chr5_2:63731498-63731517 None:intergenic 30.0%
AGAAGTGAAGATTGAATAAC+AGG - chr5_2:63731499-63731518 None:intergenic 30.0%
! TATCTTTTCTACAACCTAGT+GGG - chr5_2:63731885-63731904 None:intergenic 30.0%
!!! GTTTTTCACCTATTTTGATC+AGG - chr5_2:63731938-63731957 None:intergenic 30.0%
! ATAAAAATGACCAAGGCATT+AGG + chr5_2:63732101-63732120 Msa0781270:intron 30.0%
TTAACTACTTGTAGCATGTT+TGG - chr5_2:63732243-63732262 None:intergenic 30.0%
CATGCTACAAGTAGTTAAAT+AGG + chr5_2:63732245-63732264 Msa0781270:intron 30.0%
TGAATCTGATTTCAGTTTCT+GGG + chr5_2:63732344-63732363 Msa0781270:intron 30.0%
ATGCATCTTCTATAGCTATA+TGG + chr5_2:63732470-63732489 Msa0781270:intron 30.0%
AAGAGGTAACATATAAGCAT+AGG - chr5_2:63732499-63732518 None:intergenic 30.0%
CATAAAAATGACAAGCAAAG+AGG - chr5_2:63732516-63732535 None:intergenic 30.0%
!! TCTTGTTTCTCATTTTTCAC+TGG - chr5_2:63732689-63732708 None:intergenic 30.0%
ATCCATATTTGTCTGATTAC+AGG + chr5_2:63732717-63732736 Msa0781270:CDS 30.0%
AACCTGTAATCAGACAAATA+TGG - chr5_2:63732722-63732741 None:intergenic 30.0%
TATTGAAGTGGATAGAATTC+TGG + chr5_2:63732870-63732889 Msa0781270:CDS 30.0%
GGAGATTGCTTGTATAATTA+CGG + chr5_2:63732891-63732910 Msa0781270:CDS 30.0%
ATTGCTTGTATAATTACGGA+TGG + chr5_2:63732895-63732914 Msa0781270:CDS 30.0%
AGAGGAAATAAGCCTAAAAA+GGG - chr5_2:63733064-63733083 None:intergenic 30.0%
! TTTTAAACTCTACTAGCACT+TGG - chr5_2:63733174-63733193 None:intergenic 30.0%
TTTGGTCATACATCAAACTA+AGG + chr5_2:63733681-63733700 Msa0781270:CDS 30.0%
GAATGTAGGCTTAACAAAAA+AGG + chr5_2:63733881-63733900 Msa0781270:intron 30.0%
AAGTTCATAAAGAATACTGG+CGG + chr5_2:63734171-63734190 Msa0781270:intron 30.0%
ATCATTAGAGGAAAGATAAC+AGG - chr5_2:63734268-63734287 None:intergenic 30.0%
ATCTTTCCTCTAATGATTCA+CGG + chr5_2:63734271-63734290 Msa0781270:intron 30.0%
ATAATCGTTTCTCTACAGAA+TGG + chr5_2:63734432-63734451 Msa0781270:intron 30.0%
TAATCGTTTCTCTACAGAAT+GGG + chr5_2:63734433-63734452 Msa0781270:intron 30.0%
CAAATGTAACTTAAACAGCT+GGG + chr5_2:63734493-63734512 Msa0781270:intron 30.0%
TGATTAAGTTTCTACTTTGC+AGG + chr5_2:63734631-63734650 Msa0781270:intron 30.0%
TTCGTTAAGAAACATATTGG+AGG + chr5_2:63734662-63734681 Msa0781270:CDS 30.0%
TATGGTCATCTGTAAATTCT+TGG + chr5_2:63734823-63734842 Msa0781270:intron 30.0%
!!! GGTATCATCAGTTTTATTTG+AGG + chr5_2:63734844-63734863 Msa0781270:intron 30.0%
GCAATGAAACATTTCAACAA+AGG - chr5_2:63734879-63734898 None:intergenic 30.0%
! CTTGTTTCTCATCTATTGAA+AGG - chr5_2:63735101-63735120 None:intergenic 30.0%
CTTTCAATAGATGAGAAACA+AGG + chr5_2:63735099-63735118 Msa0781270:intron 30.0%
ATATAACCAGAAACCAACTA+TGG - chr5_2:63735125-63735144 None:intergenic 30.0%
!! ATAGTTGGTTTCTGGTTATA+TGG + chr5_2:63735124-63735143 Msa0781270:intron 30.0%
CTGGAAAGAATCAATAAACA+AGG - chr5_2:63735151-63735170 None:intergenic 30.0%
ACTACTATCGGACATTTATA+AGG - chr5_2:63735193-63735212 None:intergenic 30.0%
!!! CTGTGTCTTTTTTGTTTTGA+AGG - chr5_2:63735308-63735327 None:intergenic 30.0%
!!! GCATAAGCAAAACACTTTTT+TGG - chr5_2:63735619-63735638 None:intergenic 30.0%
! CTCTTTCAAGTATTCCACTT+TGG - chr5_2:63731345-63731364 None:intergenic 35.0%
GTATTTCATGTCTACCATGT+TGG + chr5_2:63731623-63731642 Msa0781270:intron 35.0%
!! AAATCTTTAAAGCACGGACA+TGG + chr5_2:63731699-63731718 Msa0781270:intron 35.0%
! ACATGTTTGATCTGAAGTGT+CGG + chr5_2:63731760-63731779 Msa0781270:intron 35.0%
GAAATGAAGATGCACAATCA+TGG + chr5_2:63731826-63731845 Msa0781270:intron 35.0%
! CTATCTTTTCTACAACCTAG+TGG - chr5_2:63731886-63731905 None:intergenic 35.0%
AGAATGACCCTGATCAAAAT+AGG + chr5_2:63731927-63731946 Msa0781270:intron 35.0%
ATTGTTGCTCGTCATCATAA+GGG + chr5_2:63731994-63732013 Msa0781270:intron 35.0%
! ATCATAAGGGTATGTTTCCA+TGG + chr5_2:63732007-63732026 Msa0781270:intron 35.0%
ACTGAAATCAGATTCACTGA+AGG - chr5_2:63732340-63732359 None:intergenic 35.0%
GTGAATCTGATTTCAGTTTC+TGG + chr5_2:63732343-63732362 Msa0781270:intron 35.0%
CATAACAGAATCTTGCATTG+AGG - chr5_2:63732378-63732397 None:intergenic 35.0%
ACCAAGCATAGGTGTTTAAT+CGG - chr5_2:63732404-63732423 None:intergenic 35.0%
!!! TGGTCCAGAAATTTTAGAAC+TGG - chr5_2:63732550-63732569 None:intergenic 35.0%
! TAAACCTTTTGTGTGTTTGC+AGG + chr5_2:63732841-63732860 Msa0781270:intron 35.0%
TGCAGGTTTGAATATTGAAG+TGG + chr5_2:63732858-63732877 Msa0781270:intron 35.0%
GGATGGAAACTTAACCAAAT+CGG + chr5_2:63732912-63732931 Msa0781270:CDS 35.0%
! AATATATACCTCCACCGATT+TGG - chr5_2:63732929-63732948 None:intergenic 35.0%
AGGAAATAAGCCTAAAAAGG+GGG - chr5_2:63733062-63733081 None:intergenic 35.0%
GAGGAAATAAGCCTAAAAAG+GGG - chr5_2:63733063-63733082 None:intergenic 35.0%
CAGAGGAAATAAGCCTAAAA+AGG - chr5_2:63733065-63733084 None:intergenic 35.0%
! GTTTTCCCATAGAAAAACAG+AGG - chr5_2:63733082-63733101 None:intergenic 35.0%
TCTTGAAGAGTTAATCGAGA+AGG + chr5_2:63733388-63733407 Msa0781270:intron 35.0%
CTTGAAGAGTTAATCGAGAA+GGG + chr5_2:63733389-63733408 Msa0781270:intron 35.0%
CAGAATCCATTGTTACTAGA+TGG + chr5_2:63733548-63733567 Msa0781270:intron 35.0%
ATCCATTGTTACTAGATGGA+AGG + chr5_2:63733552-63733571 Msa0781270:intron 35.0%
AACCTTCCATCTAGTAACAA+TGG - chr5_2:63733557-63733576 None:intergenic 35.0%
!!! TCTATTTTAGGGTCCTGATT+TGG + chr5_2:63733663-63733682 Msa0781270:intron 35.0%
GTTTGATGTATGACCAAATC+AGG - chr5_2:63733679-63733698 None:intergenic 35.0%
AATGGCTAAGCTTGTCTATT+AGG + chr5_2:63734098-63734117 Msa0781270:intron 35.0%
CATCTATATGCAGAGATGTT+GGG - chr5_2:63734134-63734153 None:intergenic 35.0%
CAACATCTCTGCATATAGAT+GGG + chr5_2:63734133-63734152 Msa0781270:intron 35.0%
AGTTCATAAAGAATACTGGC+GGG + chr5_2:63734172-63734191 Msa0781270:intron 35.0%
AAGATAACAGGTTCTGTGAT+AGG - chr5_2:63734256-63734275 None:intergenic 35.0%
AATCGTTTCTCTACAGAATG+GGG + chr5_2:63734434-63734453 Msa0781270:intron 35.0%
TTGCAAACACTTAACAGCTA+TGG - chr5_2:63734476-63734495 None:intergenic 35.0%
GCAAATGTAACTTAAACAGC+TGG + chr5_2:63734492-63734511 Msa0781270:intron 35.0%
TTTGCAATGAATGGCATCAT+TGG - chr5_2:63734545-63734564 None:intergenic 35.0%
TCAACAATCGAAGTTAAGAC+AGG - chr5_2:63734901-63734920 None:intergenic 35.0%
GCAGAAATACATGCCAAAAT+TGG + chr5_2:63734953-63734972 Msa0781270:intron 35.0%
GAAATACATGCCAAAATTGG+CGG + chr5_2:63734956-63734975 Msa0781270:intron 35.0%
TACTCTGTATGATGAACCTT+TGG + chr5_2:63735061-63735080 Msa0781270:intron 35.0%
ACAAAAAAGACACAGAGCTT+TGG + chr5_2:63735313-63735332 Msa0781270:CDS 35.0%
TGAGGAACTTAAGTACTACA+AGG + chr5_2:63735355-63735374 Msa0781270:CDS 35.0%
CGTTATCATTTCTTGACCTT+TGG - chr5_2:63735395-63735414 None:intergenic 35.0%
!!! TGAAGTGTATTTTTGGCAGT+TGG + chr5_2:63735502-63735521 Msa0781270:three_prime_UTR 35.0%
TTACATCTAACCCAAACCCA+TGG + chr5_2:63731230-63731249 Msa0781270:five_prime_UTR 40.0%
ATACATGTCAGTGTCGTGTT+GGG - chr5_2:63731728-63731747 None:intergenic 40.0%
AACACGACACTGACATGTAT+CGG + chr5_2:63731728-63731747 Msa0781270:intron 40.0%
TTCCTCAACACACAAATCAC+AGG - chr5_2:63731809-63731828 None:intergenic 40.0%
GAAGATGCACAATCATGGTA+TGG + chr5_2:63731831-63731850 Msa0781270:intron 40.0%
TTCTACAACCTAGTGGGATA+AGG - chr5_2:63731879-63731898 None:intergenic 40.0%
GATTGTTGCTCGTCATCATA+AGG + chr5_2:63731993-63732012 Msa0781270:intron 40.0%
! ATAAGGGTATGTTTCCATGG+AGG + chr5_2:63732010-63732029 Msa0781270:intron 40.0%
! TAAGGGTATGTTTCCATGGA+GGG + chr5_2:63732011-63732030 Msa0781270:intron 40.0%
! TATGTTTCCATGGAGGGTTT+TGG + chr5_2:63732017-63732036 Msa0781270:intron 40.0%
AGCATAATGTCCTAATGCCT+TGG - chr5_2:63732114-63732133 None:intergenic 40.0%
TAAGAACGAACGGGAAAGAA+TGG - chr5_2:63732150-63732169 None:intergenic 40.0%
ATGGAGGAGTTTGAAAGGAA+AGG - chr5_2:63732220-63732239 None:intergenic 40.0%
TTTGGATGGAGGAGTTTGAA+AGG - chr5_2:63732225-63732244 None:intergenic 40.0%
CTACTTGTAGCATGTTTGGA+TGG - chr5_2:63732239-63732258 None:intergenic 40.0%
GCAGCTGCAATATACTTTCT+TGG + chr5_2:63732623-63732642 Msa0781270:intron 40.0%
! GCAATATACTTTCTTGGTGC+AGG + chr5_2:63732629-63732648 Msa0781270:intron 40.0%
! AGTGGTGGAAAGAAAGCTAA+TGG + chr5_2:63732653-63732672 Msa0781270:CDS 40.0%
ATTACAGGTTACCTCTTGTC+TGG + chr5_2:63732732-63732751 Msa0781270:CDS 40.0%
!! TGGATTGACTTGGAAATGAC+TGG + chr5_2:63732752-63732771 Msa0781270:CDS 40.0%
!! AGAATGTGTTACTTCGAGAG+TGG + chr5_2:63732784-63732803 Msa0781270:intron 40.0%
GATCAGTGCATTGAAACTTC+TGG + chr5_2:63732817-63732836 Msa0781270:intron 40.0%
CAAACCTGCAAACACACAAA+AGG - chr5_2:63732848-63732867 None:intergenic 40.0%
TGGAAACTTAACCAAATCGG+TGG + chr5_2:63732915-63732934 Msa0781270:CDS 40.0%
AAACTTAACCAAATCGGTGG+AGG + chr5_2:63732918-63732937 Msa0781270:CDS 40.0%
GAAGATTGTCTTCTTGCATC+AGG + chr5_2:63732990-63733009 Msa0781270:intron 40.0%
! CTAGTATCTTCCCCCTTTTT+AGG + chr5_2:63733049-63733068 Msa0781270:intron 40.0%
CTTACAAGCACCTAAATCTC+AGG - chr5_2:63733129-63733148 None:intergenic 40.0%
TGAAAGAGAAGCTGAAGAAC+AGG + chr5_2:63733923-63733942 Msa0781270:CDS 40.0%
CCATCTATATGCAGAGATGT+TGG - chr5_2:63734135-63734154 None:intergenic 40.0%
CCAACATCTCTGCATATAGA+TGG + chr5_2:63734132-63734151 Msa0781270:intron 40.0%
CTAACACCGTGAATCATTAG+AGG - chr5_2:63734280-63734299 None:intergenic 40.0%
CTTGATATGGGATCACAAAC+TGG - chr5_2:63734350-63734369 None:intergenic 40.0%
!! CATTGGCTTGATATAGGAGT+AGG - chr5_2:63734528-63734547 None:intergenic 40.0%
!! TGGCATCATTGGCTTGATAT+AGG - chr5_2:63734534-63734553 None:intergenic 40.0%
AGGGACAATGTACAGGAAAA+AGG - chr5_2:63734595-63734614 None:intergenic 40.0%
AGGTACTTACAAACCTCTCT+TGG + chr5_2:63734682-63734701 Msa0781270:CDS 40.0%
GGCAGGAAATTCGATATATG+TGG + chr5_2:63734703-63734722 Msa0781270:CDS 40.0%
!! CATCGATTCACGTGTTGATA+TGG + chr5_2:63734805-63734824 Msa0781270:intron 40.0%
TGCGAAATCGAAGTTAAGAC+AGG - chr5_2:63734936-63734955 None:intergenic 40.0%
GGCTATGCACTAATTACCAA+AGG - chr5_2:63735080-63735099 None:intergenic 40.0%
ATGAGAAACAAGGCCATAGT+TGG + chr5_2:63735109-63735128 Msa0781270:intron 40.0%
!! GGCAAACATTTTCAAGCCAA+AGG + chr5_2:63735376-63735395 Msa0781270:CDS 40.0%
TACATCACTCACTCACTCAG+AGG - chr5_2:63731285-63731304 None:intergenic 45.0%
GAAAAGAAACTGCGCCAAAG+TGG + chr5_2:63731328-63731347 Msa0781270:five_prime_UTR 45.0%
AGGAAGAGAAGGAGGTTGAA+TGG - chr5_2:63731449-63731468 None:intergenic 45.0%
ATACCAGAAGGAAGAGAAGG+AGG - chr5_2:63731457-63731476 None:intergenic 45.0%
AGCATACCAGAAGGAAGAGA+AGG - chr5_2:63731460-63731479 None:intergenic 45.0%
GATACATGTCAGTGTCGTGT+TGG - chr5_2:63731729-63731748 None:intergenic 45.0%
ACACGACACTGACATGTATC+GGG + chr5_2:63731729-63731748 Msa0781270:intron 45.0%
CTTCAGATCAAACATGTGCC+CGG - chr5_2:63731757-63731776 None:intergenic 45.0%
!! ATCTGAAGTGTCGGTGATAC+AGG + chr5_2:63731769-63731788 Msa0781270:intron 45.0%
!! TCTGAAGTGTCGGTGATACA+GGG + chr5_2:63731770-63731789 Msa0781270:intron 45.0%
! AGCCTGTGATTTGTGTGTTG+AGG + chr5_2:63731804-63731823 Msa0781270:intron 45.0%
!!! TTTCCATGGAGGGTTTTGGA+GGG + chr5_2:63732021-63732040 Msa0781270:intron 45.0%
TTTGGAGGGAAAGGAAAGGA+TGG + chr5_2:63732035-63732054 Msa0781270:intron 45.0%
CTTGTAGCATGTTTGGATGG+AGG - chr5_2:63732236-63732255 None:intergenic 45.0%
TAAGTGTTCCAGAGCCTAAG+TGG + chr5_2:63732278-63732297 Msa0781270:intron 45.0%
AAGTGTTCCAGAGCCTAAGT+GGG + chr5_2:63732279-63732298 Msa0781270:intron 45.0%
GCCGATTAAACACCTATGCT+TGG + chr5_2:63732400-63732419 Msa0781270:intron 45.0%
ACTGATGACTCAACGACCAA+AGG - chr5_2:63732429-63732448 None:intergenic 45.0%
TCTGGACCAATGCTTACATG+TGG + chr5_2:63732561-63732580 Msa0781270:intron 45.0%
ACACAGCCACATGTAAGCAT+TGG - chr5_2:63732570-63732589 None:intergenic 45.0%
! TACTTTCTTGGTGCAGGTAG+TGG + chr5_2:63732635-63732654 Msa0781270:intron 45.0%
ACCTCTTGTCTGGATTGACT+TGG + chr5_2:63732742-63732761 Msa0781270:CDS 45.0%
TCCAAGTCAATCCAGACAAG+AGG - chr5_2:63732746-63732765 None:intergenic 45.0%
GGAAGATACTAGCTAGAGAC+TGG - chr5_2:63733041-63733060 None:intergenic 45.0%
AAGCACCTAAATCTCAGGCA+AGG - chr5_2:63733124-63733143 None:intergenic 45.0%
! TAGCCTCCACCCTTATTTGA+AGG + chr5_2:63733489-63733508 Msa0781270:intron 45.0%
! CACCCTTATTTGAAGGAGGA+GGG + chr5_2:63733496-63733515 Msa0781270:intron 45.0%
! ACCCTTATTTGAAGGAGGAG+GGG + chr5_2:63733497-63733516 Msa0781270:intron 45.0%
TCCCCTCCTCCTTCAAATAA+GGG - chr5_2:63733501-63733520 None:intergenic 45.0%
TTCCCCTCCTCCTTCAAATA+AGG - chr5_2:63733502-63733521 None:intergenic 45.0%
!! AAACTAAGGAGTGCCTTGAC+AGG + chr5_2:63733695-63733714 Msa0781270:CDS 45.0%
AAAAGTCATCACGCTGCTAG+TGG + chr5_2:63733733-63733752 Msa0781270:CDS 45.0%
AGCACGTCAATCACATGGTA+TGG - chr5_2:63733964-63733983 None:intergenic 45.0%
! AAGAGAGCACGTCAATCACA+TGG - chr5_2:63733969-63733988 None:intergenic 45.0%
! ATTGACGTGCTCTCTTTTCG+TGG + chr5_2:63733973-63733992 Msa0781270:intron 45.0%
! TTGACGTGCTCTCTTTTCGT+GGG + chr5_2:63733974-63733993 Msa0781270:intron 45.0%
GGTCCTTGTTAGAGAACTCT+TGG + chr5_2:63734203-63734222 Msa0781270:intron 45.0%
CCTTGTTAGAGAACTCTTGG+CGG + chr5_2:63734206-63734225 Msa0781270:intron 45.0%
CAGATCAAGGGACAATGTAC+AGG - chr5_2:63734602-63734621 None:intergenic 45.0%
ACATTGTCCCTTGATCTGTG+AGG + chr5_2:63734604-63734623 Msa0781270:intron 45.0%
TCAGTTGCCTCACAGATCAA+GGG - chr5_2:63734614-63734633 None:intergenic 45.0%
ATCAGTTGCCTCACAGATCA+AGG - chr5_2:63734615-63734634 None:intergenic 45.0%
ACTTACAAACCTCTCTTGGC+AGG + chr5_2:63734686-63734705 Msa0781270:CDS 45.0%
ATCGAATTTCCTGCCAAGAG+AGG - chr5_2:63734698-63734717 None:intergenic 45.0%
! GAGAAGATCTCCGCCAATTT+TGG - chr5_2:63734969-63734988 None:intergenic 45.0%
TGCATTCGCTGGTATCCTAA+AGG + chr5_2:63735026-63735045 Msa0781270:CDS 45.0%
! ACAAGGCCATAGTTGGTTTC+TGG + chr5_2:63735116-63735135 Msa0781270:intron 45.0%
TCACTCAGAGGCAAAAGTGG+CGG - chr5_2:63731273-63731292 None:intergenic 50.0%
CACTCACTCAGAGGCAAAAG+TGG - chr5_2:63731276-63731295 None:intergenic 50.0%
CAACCTCCTTCTCTTCCTTC+TGG + chr5_2:63731451-63731470 Msa0781270:CDS 50.0%
GGGTAGAGTAGCATACCAGA+AGG - chr5_2:63731469-63731488 None:intergenic 50.0%
CACTGACATGTATCGGGTAC+CGG + chr5_2:63731735-63731754 Msa0781270:intron 50.0%
ACTGACATGTATCGGGTACC+GGG + chr5_2:63731736-63731755 Msa0781270:intron 50.0%
! CAATCGAGCCTTATCCCACT+AGG + chr5_2:63731868-63731887 Msa0781270:intron 50.0%
!! GTTTCCATGGAGGGTTTTGG+AGG + chr5_2:63732020-63732039 Msa0781270:intron 50.0%
TTTCCCTCCAAAACCCTCCA+TGG - chr5_2:63732027-63732046 None:intergenic 50.0%
!!! ATGGAGGGTTTTGGAGGGAA+AGG + chr5_2:63732026-63732045 Msa0781270:intron 50.0%
!!! GGGTTTTGGAGGGAAAGGAA+AGG + chr5_2:63732031-63732050 Msa0781270:intron 50.0%
AGTGTTCCAGAGCCTAAGTG+GGG + chr5_2:63732280-63732299 Msa0781270:intron 50.0%
TTCTTCCTGCATCCCCACTT+AGG - chr5_2:63732295-63732314 None:intergenic 50.0%
! CACCTATGCTTGGTAGCCTT+TGG + chr5_2:63732410-63732429 Msa0781270:intron 50.0%
GACCAAAGGCTACCAAGCAT+AGG - chr5_2:63732415-63732434 None:intergenic 50.0%
TGGTCGTTGAGTCATCAGTG+AGG + chr5_2:63732430-63732449 Msa0781270:intron 50.0%
! TTTCTTGGTGCAGGTAGTGG+TGG + chr5_2:63732638-63732657 Msa0781270:intron 50.0%
!! ATCTCAGGCAAGGCGGATTA+TGG - chr5_2:63733114-63733133 None:intergenic 50.0%
ATCCGCCTTGCCTGAGATTT+AGG + chr5_2:63733116-63733135 Msa0781270:intron 50.0%
CACCTAAATCTCAGGCAAGG+CGG - chr5_2:63733121-63733140 None:intergenic 50.0%
CCTCCTTCAAATAAGGGTGG+AGG - chr5_2:63733495-63733514 None:intergenic 50.0%
! CCTCCACCCTTATTTGAAGG+AGG + chr5_2:63733492-63733511 Msa0781270:intron 50.0%
CCTCCTCCTTCAAATAAGGG+TGG - chr5_2:63733498-63733517 None:intergenic 50.0%
! CCACCCTTATTTGAAGGAGG+AGG + chr5_2:63733495-63733514 Msa0781270:intron 50.0%
!! TAAGGAGTGCCTTGACAGGA+TGG + chr5_2:63733699-63733718 Msa0781270:CDS 50.0%
!! AAGGAGTGCCTTGACAGGAT+GGG + chr5_2:63733700-63733719 Msa0781270:CDS 50.0%
ACCATTCTCCCATCCTGTCA+AGG - chr5_2:63733711-63733730 None:intergenic 50.0%
CCGCCAAGAGTTCTCTAACA+AGG - chr5_2:63734209-63734228 None:intergenic 50.0%
TCTCAGCTCTTTGCATTCGC+TGG + chr5_2:63735015-63735034 Msa0781270:CDS 50.0%
!! AAAAGTGGCGGTGATGGGTC+GGG - chr5_2:63731261-63731280 None:intergenic 55.0%
!! CAAAAGTGGCGGTGATGGGT+CGG - chr5_2:63731262-63731281 None:intergenic 55.0%
GAGGCAAAAGTGGCGGTGAT+GGG - chr5_2:63731266-63731285 None:intergenic 55.0%
AGAGGCAAAAGTGGCGGTGA+TGG - chr5_2:63731267-63731286 None:intergenic 55.0%
GCCTTGACAGGATGGGAGAA+TGG + chr5_2:63733707-63733726 Msa0781270:CDS 55.0%
GAATACTGGCGGGACTGACT+CGG + chr5_2:63734182-63734201 Msa0781270:intron 55.0%
GGCGGAGATCTTCTCTCATG+TGG + chr5_2:63734974-63734993 Msa0781270:CDS 55.0%
CTGCATCCCCACTTAGGCTC+TGG - chr5_2:63732289-63732308 None:intergenic 60.0%
CAGAGCCTAAGTGGGGATGC+AGG + chr5_2:63732287-63732306 Msa0781270:intron 60.0%
TCGGGTCGGGCCATGGGTTT+GGG - chr5_2:63731243-63731262 None:intergenic 65.0%
GTCGGGTCGGGCCATGGGTT+TGG - chr5_2:63731244-63731263 None:intergenic 70.0%
GATGGGTCGGGTCGGGCCAT+GGG - chr5_2:63731249-63731268 None:intergenic 70.0%
! TGATGGGTCGGGTCGGGCCA+TGG - chr5_2:63731250-63731269 None:intergenic 70.0%
!! TGGCGGTGATGGGTCGGGTC+GGG - chr5_2:63731256-63731275 None:intergenic 70.0%
!! GTGGCGGTGATGGGTCGGGT+CGG - chr5_2:63731257-63731276 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 63731196 63735669 63731196 ID=Msa0781270;Name=Msa0781270
chr5_2 mRNA 63731196 63735669 63731196 ID=Msa0781270-mRNA-1;Parent=Msa0781270;Name=Msa0781270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=195|1|1|1|1|1|8|260|239
chr5_2 exon 63731196 63731472 63731196 ID=Msa0781270-mRNA-1:exon:18911;Parent=Msa0781270-mRNA-1
chr5_2 exon 63732651 63732773 63732651 ID=Msa0781270-mRNA-1:exon:18912;Parent=Msa0781270-mRNA-1
chr5_2 exon 63732863 63732939 63732863 ID=Msa0781270-mRNA-1:exon:18913;Parent=Msa0781270-mRNA-1
chr5_2 exon 63733673 63733754 63733673 ID=Msa0781270-mRNA-1:exon:18914;Parent=Msa0781270-mRNA-1
chr5_2 exon 63733889 63733944 63733889 ID=Msa0781270-mRNA-1:exon:18915;Parent=Msa0781270-mRNA-1
chr5_2 exon 63734653 63734742 63734653 ID=Msa0781270-mRNA-1:exon:18916;Parent=Msa0781270-mRNA-1
chr5_2 exon 63734957 63735047 63734957 ID=Msa0781270-mRNA-1:exon:18917;Parent=Msa0781270-mRNA-1
chr5_2 exon 63735291 63735669 63735291 ID=Msa0781270-mRNA-1:exon:18918;Parent=Msa0781270-mRNA-1
chr5_2 five_prime_UTR 63731196 63731390 63731196 ID=Msa0781270-mRNA-1:five_prime_utr;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63731391 63731472 63731391 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63732651 63732773 63732651 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63732863 63732939 63732863 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63733673 63733754 63733673 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63733889 63733944 63733889 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63734653 63734742 63734653 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63734957 63735047 63734957 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 CDS 63735291 63735409 63735291 ID=Msa0781270-mRNA-1:cds;Parent=Msa0781270-mRNA-1
chr5_2 three_prime_UTR 63735410 63735669 63735410 ID=Msa0781270-mRNA-1:three_prime_utr;Parent=Msa0781270-mRNA-1
Gene Sequence

>Msa0781270

ATGGAAAAGCTTGTTAACTCTTTTTCGGTGTTAGAACTTGACGCTGACGATAACACCATTCAACCTCCTTCTCTTCCTTCTGGTAGTGGTGGAAAGAAAGCTAATGGCAAAGCTTTACCAGTGAAAAATGAGAAACAAGATCAACACAATCCATATTTGTCTGATTACAGGTTACCTCTTGTCTGGATTGACTTGGAAATGACTGGTTTGAATATTGAAGTGGATAGAATTCTGGAGATTGCTTGTATAATTACGGATGGAAACTTAACCAAATCGGTGGAGGGTCCTGATTTGGTCATACATCAAACTAAGGAGTGCCTTGACAGGATGGGAGAATGGTGTAAAAGTCATCACGCTGCTAGTGGCTTAACAAAAAAGGTGCTTCAAAGTACAATTAGTGAAAGAGAAGCTGAAGAACAGGTTATTGAATTCGTTAAGAAACATATTGGAGGTACTTACAAACCTCTCTTGGCAGGAAATTCGATATATGTGGATTTACAATATATGAAGAAATACATGCCAAAATTGGCGGAGATCTTCTCTCATGTGGTTGTTGATGTTAGTAGTATCTCAGCTCTTTGCATTCGCTGGTATCCTAAAGATCAGAAAAAAGTACCTTCAAAACAAAAAAGACACAGAGCTTTGGATGATATTAGAGAAAGTATTGAGGAACTTAAGTACTACAAGGCAAACATTTTCAAGCCAAAGGTCAAGAAATGA

Protein sequence

>Msa0781270

MEKLVNSFSVLELDADDNTIQPPSLPSGSGGKKANGKALPVKNEKQDQHNPYLSDYRLPLVWIDLEMTGLNIEVDRILEIACIITDGNLTKSVEGPDLVIHQTKECLDRMGEWCKSHHAASGLTKKVLQSTISEREAEEQVIEFVKKHIGGTYKPLLAGNSIYVDLQYMKKYMPKLAEIFSHVVVDVSSISALCIRWYPKDQKKVPSKQKRHRALDDIRESIEELKYYKANIFKPKVKK*