AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025940 MtrunA17_Chr0c32g0494171 99.000 100 1 0 1 100 1 100 1.32e-68 200
Msa1025940 MtrunA17_Chr7g0243961 99.000 100 1 0 1 100 1 100 1.32e-68 200
Msa1025940 MtrunA17_Chr3g0114281 63.095 84 31 0 12 95 66 149 3.39e-36 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025940 AT2G38450.1 80.952 84 15 1 12 94 53 136 4.49e-46 145
Msa1025940 AT5G05360.1 66.667 90 30 0 6 95 71 160 1.79e-41 134
Msa1025940 AT5G05360.2 64.634 82 29 0 6 87 71 152 6.09e-36 119
Msa1025940 AT2G38450.2 76.471 51 11 1 12 61 53 103 2.15e-23 87.4

Find 50 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTCACCTTTCAGAATTT+AGG 0.137030 7_1:-57212154 None:intergenic
CCATTTGCTGAAATTGAAAT+TGG 0.176976 7_1:+57209794 Msa1025940:five_prime_UTR
ACTAAACAAATTTCGTAAAT+TGG 0.182347 7_1:+57209482 Msa1025940:five_prime_UTR
ATTCTTAACCAGACTAAATT+TGG 0.185003 7_1:+57212124 Msa1025940:exon
TTGTGTGAAACGTTGGTTTA+AGG 0.206492 7_1:+57209888 Msa1025940:CDS
AACTCACCTTTCAGAATTTA+GGG 0.248330 7_1:-57212153 None:intergenic
GTTGGTTTAAGGATACTCTT+AGG 0.251388 7_1:+57209899 Msa1025940:CDS
TGATGTTAATATGCAGATTT+TGG 0.257808 7_1:+57209936 Msa1025940:CDS
TTGAAATTGGAAGGGATATA+TGG 0.267428 7_1:+57209807 Msa1025940:exon
CCAATTTCAATTTCAGCAAA+TGG 0.305590 7_1:-57209794 None:intergenic
GGATATATGGAGAGCAGTAT+AGG 0.337976 7_1:+57209820 Msa1025940:exon
GAATTCTTTCTCACTTTCCT+TGG 0.364041 7_1:+57214276 Msa1025940:three_prime_UTR
CGAGGGTTAGGTCTTCAGTT+TGG 0.387633 7_1:+57211949 Msa1025940:CDS
GATATATGGAGAGCAGTATA+GGG 0.394996 7_1:+57209821 Msa1025940:exon
TCTGCCACAACCCCTGATAA+AGG 0.396968 7_1:-57209865 None:intergenic
CAATTTCAATTTCAGCAAAT+GGG 0.407593 7_1:-57209793 None:intergenic
TGACAAAAGCATCGAGGGTT+AGG 0.410197 7_1:+57211937 Msa1025940:CDS
ATCTTCAAAGAACAACAAAA+AGG 0.422643 7_1:+57209658 Msa1025940:five_prime_UTR
GGATGGAACCAAATTTAGTC+TGG 0.438861 7_1:-57212132 None:intergenic
AGGTCTTCAGTTTGGAAAGT+TGG 0.443829 7_1:+57211957 Msa1025940:CDS
GTTGGTCAGATGTATTATAG+TGG 0.448023 7_1:+57209958 Msa1025940:CDS
TGCAGTTTAGAGAGAGAAAG+AGG 0.461079 7_1:-57209578 None:intergenic
TTGCTGAAATTGAAATTGGA+AGG 0.463912 7_1:+57209798 Msa1025940:five_prime_UTR
GCTTCTTCATAGCCACCATA+TGG 0.470491 7_1:+57214124 Msa1025940:three_prime_UTR
ATTTGAATGGAGAATTAAGA+AGG 0.490719 7_1:-57209606 None:intergenic
TTGGTTTAAGGATACTCTTA+GGG 0.499307 7_1:+57209900 Msa1025940:CDS
GTATAGGGAAAGATGGCAAC+GGG 0.500664 7_1:+57209836 Msa1025940:CDS
TTTGAATGGAGAATTAAGAA+GGG 0.503374 7_1:-57209605 None:intergenic
TAACTGAAAGAACATCCATA+TGG 0.524519 7_1:-57214139 None:intergenic
TGCTGAAATTGAAATTGGAA+GGG 0.527764 7_1:+57209799 Msa1025940:five_prime_UTR
ACTCTTAGGGAGGCTAAAGC+TGG 0.533054 7_1:+57209913 Msa1025940:CDS
GAGAGCAGTATAGGGAAAGA+TGG 0.541345 7_1:+57209829 Msa1025940:CDS
CAGATGTATTATAGTGGCTA+TGG 0.541971 7_1:+57209964 Msa1025940:CDS
CACCTTTCAGAATTTAGGGA+TGG 0.544378 7_1:-57212149 None:intergenic
AAAGTTGGAGATAAGCGTCC+AGG 0.548549 7_1:+57211972 Msa1025940:CDS
TGGGAATGAAGGGAAAACTT+TGG 0.550885 7_1:+57211913 Msa1025940:intron
TGTTGCAAAAGATGCTCAAA+AGG 0.554722 7_1:+57209987 Msa1025940:CDS
AGAGAGAAAGAGGCAGCTAT+CGG 0.565552 7_1:-57209568 None:intergenic
AGAACATGGATGGATTTGAA+TGG 0.576276 7_1:-57209619 None:intergenic
TTCCATCCCTAAATTCTGAA+AGG 0.580447 7_1:+57212147 Msa1025940:three_prime_UTR
TGGCAGATTGTGTGAAACGT+TGG 0.602973 7_1:+57209881 Msa1025940:CDS
GTTTAAGGATACTCTTAGGG+AGG 0.610668 7_1:+57209903 Msa1025940:CDS
TGTTATATGAAGAACATGGA+TGG 0.612993 7_1:-57209629 None:intergenic
TTGAATGGAGAATTAAGAAG+GGG 0.614053 7_1:-57209604 None:intergenic
TTGGCTGACAAAAGCATCGA+GGG 0.617055 7_1:+57211932 Msa1025940:CDS
CTGAAAGAACATCCATATGG+TGG 0.632519 7_1:-57214136 None:intergenic
AGTATAGGGAAAGATGGCAA+CGG 0.632557 7_1:+57209835 Msa1025940:CDS
TTTGGCTGACAAAAGCATCG+AGG 0.704862 7_1:+57211931 Msa1025940:CDS
TGACTCTGATGAATCAAACG+AGG 0.712793 7_1:+57212101 Msa1025940:CDS
ATGATGTTATATGAAGAACA+TGG 0.733783 7_1:-57209633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTCTTTAAATTTA+TGG + chr7_1:57209712-57209731 Msa1025940:intron 10.0%
!!! TATTTTTAATGTTATCATTA+AGG - chr7_1:57211070-57211089 None:intergenic 10.0%
!!! GTATTTTAAGTAAAAAATAT+GGG + chr7_1:57211109-57211128 Msa1025940:intron 10.0%
!!! TATTTTAAGTAAAAAATATG+GGG + chr7_1:57211110-57211129 Msa1025940:intron 10.0%
!!! TTTATTTATTTTTAGATGAT+TGG + chr7_1:57212284-57212303 Msa1025940:intron 10.0%
!! AATAAAAGGATATTTATTAA+TGG + chr7_1:57212675-57212694 Msa1025940:intron 10.0%
!! ATAAAAGGATATTTATTAAT+GGG + chr7_1:57212676-57212695 Msa1025940:intron 10.0%
!! AAATCATAGATATAAAATTA+TGG - chr7_1:57212955-57212974 None:intergenic 10.0%
!!! TAATTTTATATCTATGATTT+TGG + chr7_1:57212955-57212974 Msa1025940:intron 10.0%
!!! AATTTTATATCTATGATTTT+GGG + chr7_1:57212956-57212975 Msa1025940:intron 10.0%
!!! TAAATTTATGGAACAAATTT+TGG + chr7_1:57209724-57209743 Msa1025940:intron 15.0%
!!! AAATTTATGGAACAAATTTT+GGG + chr7_1:57209725-57209744 Msa1025940:intron 15.0%
!!! AAACACGATTTTTTTTTAAA+AGG - chr7_1:57210543-57210562 None:intergenic 15.0%
!!! CGTATTTTAAGTAAAAAATA+TGG + chr7_1:57211108-57211127 Msa1025940:intron 15.0%
!!! TAACTTTTAATTTATGTTTC+TGG + chr7_1:57211244-57211263 Msa1025940:intron 15.0%
!!! ACATGATCATTTTTAAAAAA+AGG - chr7_1:57211502-57211521 None:intergenic 15.0%
!! AGTTTCTATTATGAAATATA+TGG + chr7_1:57211749-57211768 Msa1025940:intron 15.0%
!! TATTATGAAATATATGGTTA+TGG + chr7_1:57211755-57211774 Msa1025940:intron 15.0%
!! GAGATTAATATTATTTGTTT+GGG + chr7_1:57211894-57211913 Msa1025940:intron 15.0%
!! ATAAAAGGACATTAATTAAT+GGG - chr7_1:57212613-57212632 None:intergenic 15.0%
!! AATAAAAGGACATTAATTAA+TGG - chr7_1:57212614-57212633 None:intergenic 15.0%
!!! TTCATTGATTGATAAAAAAA+TGG - chr7_1:57214201-57214220 None:intergenic 15.0%
!! ACTAAACAAATTTCGTAAAT+TGG + chr7_1:57209482-57209501 Msa1025940:five_prime_UTR 20.0%
!!! AAAATTTTCACAATCTCAAT+TGG + chr7_1:57209683-57209702 Msa1025940:intron 20.0%
!!! AAATTTTCACAATCTCAATT+GGG + chr7_1:57209684-57209703 Msa1025940:intron 20.0%
!!! ATTTTGGGATTTTTTTTTTC+AGG + chr7_1:57209740-57209759 Msa1025940:intron 20.0%
!!! TTTTGGGATTTTTTTTTTCA+GGG + chr7_1:57209741-57209760 Msa1025940:intron 20.0%
!!! TGTTTTTAATTAACTTGCAT+TGG + chr7_1:57210052-57210071 Msa1025940:intron 20.0%
!!! TTTTTGTTTGTTTGTTTGTT+TGG + chr7_1:57210076-57210095 Msa1025940:intron 20.0%
!! AATATTGCATGATAATAGTT+AGG + chr7_1:57210140-57210159 Msa1025940:intron 20.0%
!! TAAACAAATGAATAAAACCT+AGG + chr7_1:57210181-57210200 Msa1025940:intron 20.0%
!! GTAGAAAGTGATAATAAATT+TGG + chr7_1:57210246-57210265 Msa1025940:intron 20.0%
!! ATGTCTTAAATATGAAGTAT+TGG + chr7_1:57210335-57210354 Msa1025940:intron 20.0%
!! ATTCATTTCTTTATTCACTT+TGG - chr7_1:57210567-57210586 None:intergenic 20.0%
!! TAAAGAAATGAATAAAACCT+AGG + chr7_1:57210574-57210593 Msa1025940:intron 20.0%
!! TGTTAGCATTTATAAGTATT+AGG - chr7_1:57210803-57210822 None:intergenic 20.0%
!! ACCACTATTATATATCATTT+CGG + chr7_1:57210919-57210938 Msa1025940:intron 20.0%
!!! TTTTTCTCATATTGGATTTT+AGG + chr7_1:57211386-57211405 Msa1025940:intron 20.0%
!! ATTAAATTCACATAAATGTG+TGG - chr7_1:57211535-57211554 None:intergenic 20.0%
!! CTGATATAGAAATTAAAACA+AGG - chr7_1:57211715-57211734 None:intergenic 20.0%
!!! TTTAATTTCTATATCAGAAG+TGG + chr7_1:57211718-57211737 Msa1025940:intron 20.0%
!! TATTTGAATATATAGAGTCA+TGG + chr7_1:57211795-57211814 Msa1025940:intron 20.0%
!! GGAGATTAATATTATTTGTT+TGG + chr7_1:57211893-57211912 Msa1025940:intron 20.0%
!! TTTCAATTAGATAGTAAATG+TGG - chr7_1:57212234-57212253 None:intergenic 20.0%
!!! TAATTTTGCATCTATGATTT+TGG - chr7_1:57212335-57212354 None:intergenic 20.0%
!! AAATCATAGATGCAAAATTA+TGG + chr7_1:57212335-57212354 Msa1025940:intron 20.0%
!! TATATACTAACTATCTCATT+AGG + chr7_1:57212782-57212801 Msa1025940:intron 20.0%
!!! ATATTTGTTAAAATCCTTCA+TGG + chr7_1:57212981-57213000 Msa1025940:intron 20.0%
!!! TACCTTTTTTTCTTAGTATT+TGG + chr7_1:57213054-57213073 Msa1025940:intron 20.0%
!! ATCCAAATACTAAGAAAAAA+AGG - chr7_1:57213059-57213078 None:intergenic 20.0%
! TTTGAATGGAGAATTAAGAA+GGG - chr7_1:57209608-57209627 None:intergenic 25.0%
! ATTTGAATGGAGAATTAAGA+AGG - chr7_1:57209609-57209628 None:intergenic 25.0%
! ATGATGTTATATGAAGAACA+TGG - chr7_1:57209636-57209655 None:intergenic 25.0%
! ATCTTCAAAGAACAACAAAA+AGG + chr7_1:57209658-57209677 Msa1025940:five_prime_UTR 25.0%
! CAATTTCAATTTCAGCAAAT+GGG - chr7_1:57209796-57209815 None:intergenic 25.0%
!! TGATGTTAATATGCAGATTT+TGG + chr7_1:57209936-57209955 Msa1025940:CDS 25.0%
!!! TTTCTTTGCTTTCTTGTTTT+TGG + chr7_1:57210015-57210034 Msa1025940:intron 25.0%
! GATATATAATAGTGGTTTAG+CGG - chr7_1:57210915-57210934 None:intergenic 25.0%
! CCACTATTATATATCATTTC+GGG + chr7_1:57210920-57210939 Msa1025940:intron 25.0%
! TTATATATCATTTCGGGATT+TGG + chr7_1:57210926-57210945 Msa1025940:intron 25.0%
!!! CTATCTACTTTTTCTCATAT+TGG + chr7_1:57211378-57211397 Msa1025940:intron 25.0%
!!! CATTTTTAAAAAAAGGTCCA+CGG - chr7_1:57211495-57211514 None:intergenic 25.0%
! TGTGAAGAATAGAAAAACAT+TGG + chr7_1:57211581-57211600 Msa1025940:intron 25.0%
! TATTATTTGTTTGGGAATGA+AGG + chr7_1:57211902-57211921 Msa1025940:intron 25.0%
! ATTATTTGTTTGGGAATGAA+GGG + chr7_1:57211903-57211922 Msa1025940:intron 25.0%
!! TTTTCCTTTGTAAGTTAATG+TGG + chr7_1:57212030-57212049 Msa1025940:intron 25.0%
!!! TTGTTTGCTGCATTTTTATT+AGG + chr7_1:57212060-57212079 Msa1025940:intron 25.0%
! ATTCTTAACCAGACTAAATT+TGG + chr7_1:57212124-57212143 Msa1025940:exon 25.0%
! ATAATAGTGCACTGAATAAA+AGG - chr7_1:57212628-57212647 None:intergenic 25.0%
! ATAATATCGCACTGAATAAA+AGG + chr7_1:57212661-57212680 Msa1025940:intron 25.0%
! AGTATATATAAGCACCAATA+GGG - chr7_1:57212770-57212789 None:intergenic 25.0%
! TAGTATATATAAGCACCAAT+AGG - chr7_1:57212771-57212790 None:intergenic 25.0%
!! TTGACAATTAATTTGAGATC+GGG - chr7_1:57213114-57213133 None:intergenic 25.0%
!! CTTGACAATTAATTTGAGAT+CGG - chr7_1:57213115-57213134 None:intergenic 25.0%
!! AGTTTTTGTTGAATCTACAT+TGG + chr7_1:57213250-57213269 Msa1025940:intron 25.0%
! TTGTTGAAGTTTCAAAATCA+CGG + chr7_1:57213820-57213839 Msa1025940:intron 25.0%
! TTTCAACAATTGATACTTTC+TGG + chr7_1:57213931-57213950 Msa1025940:intron 25.0%
! TTCAACAATTGATACTTTCT+GGG + chr7_1:57213932-57213951 Msa1025940:intron 25.0%
! TTTAACCTGAAAATGGAAAA+TGG - chr7_1:57214037-57214056 None:intergenic 25.0%
! CAAAATCAATTTACCAGAAA+GGG - chr7_1:57214063-57214082 None:intergenic 25.0%
! ACAAAATCAATTTACCAGAA+AGG - chr7_1:57214064-57214083 None:intergenic 25.0%
!!! TTTGATTTTTGAGCATATTG+TGG + chr7_1:57214237-57214256 Msa1025940:three_prime_UTR 25.0%
TTGAATGGAGAATTAAGAAG+GGG - chr7_1:57209607-57209626 None:intergenic 30.0%
TGTTATATGAAGAACATGGA+TGG - chr7_1:57209632-57209651 None:intergenic 30.0%
CCAATTTCAATTTCAGCAAA+TGG - chr7_1:57209797-57209816 None:intergenic 30.0%
! CCATTTGCTGAAATTGAAAT+TGG + chr7_1:57209794-57209813 Msa1025940:five_prime_UTR 30.0%
TTGCTGAAATTGAAATTGGA+AGG + chr7_1:57209798-57209817 Msa1025940:five_prime_UTR 30.0%
TGCTGAAATTGAAATTGGAA+GGG + chr7_1:57209799-57209818 Msa1025940:five_prime_UTR 30.0%
TTGAAATTGGAAGGGATATA+TGG + chr7_1:57209807-57209826 Msa1025940:exon 30.0%
TTGGTTTAAGGATACTCTTA+GGG + chr7_1:57209900-57209919 Msa1025940:CDS 30.0%
!! GTTAATATGCAGATTTTGGT+TGG + chr7_1:57209940-57209959 Msa1025940:CDS 30.0%
TGTTTGTTTGTTTGTTTGGT+TGG + chr7_1:57210080-57210099 Msa1025940:intron 30.0%
!!! TTTGGTTGGTGTTGATTTTT+TGG + chr7_1:57210094-57210113 Msa1025940:intron 30.0%
!!! TTGGTTGGTGTTGATTTTTT+GGG + chr7_1:57210095-57210114 Msa1025940:intron 30.0%
!! GCTAACAATGTTTTAAGTCA+CGG + chr7_1:57210409-57210428 Msa1025940:intron 30.0%
! GTCTCTTAAATCTGAAGTAT+CGG + chr7_1:57210742-57210761 Msa1025940:intron 30.0%
! CTGCGTTGTTATTAAATAAC+TGG + chr7_1:57210882-57210901 Msa1025940:intron 30.0%
CCCGAAATGATATATAATAG+TGG - chr7_1:57210923-57210942 None:intergenic 30.0%
!!! AGCAGTGATTTTTTGCAAAT+CGG + chr7_1:57210995-57211014 Msa1025940:intron 30.0%
TATTTATTTCAACCGCTTTG+TGG + chr7_1:57211333-57211352 Msa1025940:intron 30.0%
AGAAAAAGTAGATAGCACAA+CGG - chr7_1:57211373-57211392 None:intergenic 30.0%
! TCACATAAATGTGTGGATTT+TGG - chr7_1:57211528-57211547 None:intergenic 30.0%
TATTCTTCACATATACAGAC+AGG - chr7_1:57211572-57211591 None:intergenic 30.0%
AACATTGGAAGTTCTATTGT+TGG + chr7_1:57211596-57211615 Msa1025940:intron 30.0%
TATGAAGTATGAACAATGAG+TGG + chr7_1:57211824-57211843 Msa1025940:intron 30.0%
!! TGTTTGTCTGTCTTTTGTTT+TGG + chr7_1:57211871-57211890 Msa1025940:intron 30.0%
!!! GTTTGTCTGTCTTTTGTTTT+GGG + chr7_1:57211872-57211891 Msa1025940:intron 30.0%
TTAGCCACATTAACTTACAA+AGG - chr7_1:57212037-57212056 None:intergenic 30.0%
AACTCACCTTTCAGAATTTA+GGG - chr7_1:57212156-57212175 None:intergenic 30.0%
AAACTCACCTTTCAGAATTT+AGG - chr7_1:57212157-57212176 None:intergenic 30.0%
CCATTATTAAGTAACAACGT+GGG - chr7_1:57212198-57212217 None:intergenic 30.0%
! ACTTAATAATGGCCTCTTTT+TGG + chr7_1:57212206-57212225 Msa1025940:intron 30.0%
!! TGAAAGATTTTAACCGAGAT+AGG + chr7_1:57212309-57212328 Msa1025940:intron 30.0%
TCAAAGAACTCTCATTCTAA+AGG - chr7_1:57212817-57212836 None:intergenic 30.0%
! TATATACTGACTATCCCATT+AGG - chr7_1:57212510-57212529 None:intergenic 30.0%
!! TAATGGGCTGTAATTAGAAA+CGG - chr7_1:57212692-57212711 None:intergenic 30.0%
!! TAATGGGCTGTAATTAGAAA+CGG + chr7_1:57212692-57212711 Msa1025940:intron 30.0%
TCAAAGAACTCTCATTCTAA+AGG + chr7_1:57212817-57212836 Msa1025940:intron 30.0%
!! GCTCAAATTTATTTCTGACT+TGG + chr7_1:57213022-57213041 Msa1025940:intron 30.0%
GTTGTGTTGTGTTATCTAAA+CGG + chr7_1:57213157-57213176 Msa1025940:intron 30.0%
TTTGTTGAATCTACATTGGA+AGG + chr7_1:57213254-57213273 Msa1025940:intron 30.0%
TTGTTGAATCTACATTGGAA+GGG + chr7_1:57213255-57213274 Msa1025940:intron 30.0%
TTATCCATGCATGAGATTTA+AGG - chr7_1:57213401-57213420 None:intergenic 30.0%
TAAATCTCATGCATGGATAA+TGG + chr7_1:57213401-57213420 Msa1025940:intron 30.0%
TTACATCTTGACATTCCTAA+CGG - chr7_1:57213440-57213459 None:intergenic 30.0%
GTTAAGGATTCAAAGCAATA+AGG - chr7_1:57213469-57213488 None:intergenic 30.0%
TGTTCTCAACATTCTTTCTT+TGG + chr7_1:57213511-57213530 Msa1025940:intron 30.0%
! ATAGTACAAAGCAACTTGTT+TGG + chr7_1:57213571-57213590 Msa1025940:intron 30.0%
GTAAATTTACCATTCCCAAA+TGG + chr7_1:57213635-57213654 Msa1025940:intron 30.0%
ACTGATGTGATAATACTTAG+CGG + chr7_1:57213734-57213753 Msa1025940:intron 30.0%
TTGAAACTTCAACAAAACCA+CGG - chr7_1:57213815-57213834 None:intergenic 30.0%
TCAACAATTGATACTTTCTG+GGG + chr7_1:57213933-57213952 Msa1025940:intron 30.0%
TGCATATACCTACAAAACAA+AGG - chr7_1:57214090-57214109 None:intergenic 30.0%
TAACTGAAAGAACATCCATA+TGG - chr7_1:57214142-57214161 None:intergenic 30.0%
! AGAACATGGATGGATTTGAA+TGG - chr7_1:57209622-57209641 None:intergenic 35.0%
GATATATGGAGAGCAGTATA+GGG + chr7_1:57209821-57209840 Msa1025940:exon 35.0%
!! TTGTGTGAAACGTTGGTTTA+AGG + chr7_1:57209888-57209907 Msa1025940:CDS 35.0%
! GTTGGTTTAAGGATACTCTT+AGG + chr7_1:57209899-57209918 Msa1025940:CDS 35.0%
GTTGGTCAGATGTATTATAG+TGG + chr7_1:57209958-57209977 Msa1025940:CDS 35.0%
CAGATGTATTATAGTGGCTA+TGG + chr7_1:57209964-57209983 Msa1025940:CDS 35.0%
TGTTGCAAAAGATGCTCAAA+AGG + chr7_1:57209987-57210006 Msa1025940:CDS 35.0%
! GCTAACAACGTTTTATGTCA+CGG + chr7_1:57210816-57210835 Msa1025940:intron 35.0%
! TTTTTGCAAATCGGCTATAG+CGG + chr7_1:57211004-57211023 Msa1025940:intron 35.0%
! AGCGGTTATTGATTGCATAT+CGG + chr7_1:57211022-57211041 Msa1025940:intron 35.0%
CTTATATAACCCCTAAACCT+AGG + chr7_1:57211134-57211153 Msa1025940:intron 35.0%
TATGAAGTGAAGAGAGAAGA+AGG - chr7_1:57211192-57211211 None:intergenic 35.0%
ATAGCACAACGGAAAAATAG+AGG - chr7_1:57211362-57211381 None:intergenic 35.0%
ATTGGAAGTTCTATTGTTGG+TGG + chr7_1:57211599-57211618 Msa1025940:intron 35.0%
TAAAACAGTAGAGGTTTACC+TGG - chr7_1:57211993-57212012 None:intergenic 35.0%
ATAAGCTGCTAAAACAGTAG+AGG - chr7_1:57212002-57212021 None:intergenic 35.0%
TTCCATCCCTAAATTCTGAA+AGG + chr7_1:57212147-57212166 Msa1025940:three_prime_UTR 35.0%
! CCCACGTTGTTACTTAATAA+TGG + chr7_1:57212195-57212214 Msa1025940:intron 35.0%
GCCATTATTAAGTAACAACG+TGG - chr7_1:57212199-57212218 None:intergenic 35.0%
!! TCTATGATTTTGGCCTATCT+CGG - chr7_1:57212325-57212344 None:intergenic 35.0%
!! CATTCTAAAGGCATCAAGAA+GGG - chr7_1:57212463-57212482 None:intergenic 35.0%
!! TCATTCTAAAGGCATCAAGA+AGG - chr7_1:57212464-57212483 None:intergenic 35.0%
AGTCAGTATATATAAGCACC+AGG + chr7_1:57212518-57212537 Msa1025940:intron 35.0%
GTCAGTATATATAAGCACCA+GGG + chr7_1:57212519-57212538 Msa1025940:intron 35.0%
AGCATGCTTACTATGAGAAA+CGG + chr7_1:57212555-57212574 Msa1025940:intron 35.0%
!! AATGGGCTGTAATTAGAAAC+GGG - chr7_1:57212693-57212712 None:intergenic 35.0%
!! AATGGGCTGTAATTAGAAAC+GGG + chr7_1:57212693-57212712 Msa1025940:intron 35.0%
TAATTAGAAACGGGTCATGA+TGG + chr7_1:57212702-57212721 Msa1025940:intron 35.0%
AATTAGAAACGGGTCATGAT+GGG + chr7_1:57212703-57212722 Msa1025940:intron 35.0%
AACAGGCTTACTATGAGAAA+CGG - chr7_1:57212734-57212753 None:intergenic 35.0%
TGATACAAAACACACCATGA+AGG - chr7_1:57212998-57213017 None:intergenic 35.0%
! TTCATGGTGTGTTTTGTATC+AGG + chr7_1:57212997-57213016 Msa1025940:intron 35.0%
! ACAATTAATTTGAGATCGGG+CGG - chr7_1:57213111-57213130 None:intergenic 35.0%
TGTTGAATCTACATTGGAAG+GGG + chr7_1:57213256-57213275 Msa1025940:intron 35.0%
CTTTGAATCCTTAACTGCTT+TGG + chr7_1:57213474-57213493 Msa1025940:intron 35.0%
ACAATATGTCCATTTGGGAA+TGG - chr7_1:57213647-57213666 None:intergenic 35.0%
TTCCCAAATGGACATATTGT+TGG + chr7_1:57213647-57213666 Msa1025940:intron 35.0%
CACCAACAATATGTCCATTT+GGG - chr7_1:57213652-57213671 None:intergenic 35.0%
ACACCAACAATATGTCCATT+TGG - chr7_1:57213653-57213672 None:intergenic 35.0%
AAATGGACATATTGTTGGTG+TGG + chr7_1:57213652-57213671 Msa1025940:intron 35.0%
ACATATTGTTGGTGTGGTTT+CGG + chr7_1:57213658-57213677 Msa1025940:intron 35.0%
!! TCAATGTTGATTCTACCAGT+TGG + chr7_1:57213700-57213719 Msa1025940:intron 35.0%
CAGTATGTTACATTTCCAAC+TGG - chr7_1:57213718-57213737 None:intergenic 35.0%
AATACTTAGCGGAAACTGAA+CGG + chr7_1:57213745-57213764 Msa1025940:intron 35.0%
!! CAACTAACTTGGTGTATGTT+TGG - chr7_1:57213880-57213899 None:intergenic 35.0%
TTGTTGAAAAAGATGCCTTC+TGG - chr7_1:57213920-57213939 None:intergenic 35.0%
! ACAGACCATTTTCCATTTTC+AGG + chr7_1:57214029-57214048 Msa1025940:intron 35.0%
AGGGCAATTTAACCTGAAAA+TGG - chr7_1:57214044-57214063 None:intergenic 35.0%
!!! TTTGTGCTCCTTTGTTTTGT+AGG + chr7_1:57214079-57214098 Msa1025940:intron 35.0%
GAATTCTTTCTCACTTTCCT+TGG + chr7_1:57214276-57214295 Msa1025940:three_prime_UTR 35.0%
TATCGGAGAAAAAGACAGTG+CGG - chr7_1:57209554-57209573 None:intergenic 40.0%
TGCAGTTTAGAGAGAGAAAG+AGG - chr7_1:57209581-57209600 None:intergenic 40.0%
GGATATATGGAGAGCAGTAT+AGG + chr7_1:57209820-57209839 Msa1025940:exon 40.0%
AGTATAGGGAAAGATGGCAA+CGG + chr7_1:57209835-57209854 Msa1025940:CDS 40.0%
! TTTTCCTTTATCAGGGGTTG+TGG + chr7_1:57209861-57209880 Msa1025940:CDS 40.0%
GTTTAAGGATACTCTTAGGG+AGG + chr7_1:57209903-57209922 Msa1025940:CDS 40.0%
TGCAAAAGATGCTCAAAAGG+TGG + chr7_1:57209990-57210009 Msa1025940:intron 40.0%
TCAGGTGTTCATATCTGTGT+CGG - chr7_1:57210212-57210231 None:intergenic 40.0%
! CAATACCAAGCATCGTAAAG+TGG - chr7_1:57210435-57210454 None:intergenic 40.0%
!! TGTTTGTGTTGGTTCTTCCT+AGG - chr7_1:57210594-57210613 None:intergenic 40.0%
CATGTTGCAATGCTTGATTG+CGG + chr7_1:57210840-57210859 Msa1025940:intron 40.0%
GTCGTAGTCAAATCGCAAAT+CGG - chr7_1:57210969-57210988 None:intergenic 40.0%
TGAGAGGTTACCTAGGTTTA+GGG - chr7_1:57211147-57211166 None:intergenic 40.0%
ATGAGAGGTTACCTAGGTTT+AGG - chr7_1:57211148-57211167 None:intergenic 40.0%
TTAGTGATGAGAGGTTACCT+AGG - chr7_1:57211154-57211173 None:intergenic 40.0%
AAATAGAGGAAGCCACAAAG+CGG - chr7_1:57211348-57211367 None:intergenic 40.0%
GTGTTATCAATAGCGAATCG+CGG - chr7_1:57211426-57211445 None:intergenic 40.0%
! TATTGATAACACTGTCGTGG+AGG + chr7_1:57211434-57211453 Msa1025940:intron 40.0%
TGAACAATGAGTGGAGTCTT+TGG + chr7_1:57211833-57211852 Msa1025940:intron 40.0%
TGGGAATGAAGGGAAAACTT+TGG + chr7_1:57211913-57211932 Msa1025940:intron 40.0%
AGGTCTTCAGTTTGGAAAGT+TGG + chr7_1:57211957-57211976 Msa1025940:CDS 40.0%
TGACTCTGATGAATCAAACG+AGG + chr7_1:57212101-57212120 Msa1025940:CDS 40.0%
GGATGGAACCAAATTTAGTC+TGG - chr7_1:57212135-57212154 None:intergenic 40.0%
CACCTTTCAGAATTTAGGGA+TGG - chr7_1:57212152-57212171 None:intergenic 40.0%
ACGTGGGTGTTCAAAAGATT+GGG - chr7_1:57212182-57212201 None:intergenic 40.0%
AACGTGGGTGTTCAAAAGAT+TGG - chr7_1:57212183-57212202 None:intergenic 40.0%
GTAAATGTGGCACCAAAAAG+AGG - chr7_1:57212221-57212240 None:intergenic 40.0%
AGAGAATCCATGAACAGAGT+AGG + chr7_1:57212419-57212438 Msa1025940:intron 40.0%
GAGAATCCATGAACAGAGTA+GGG + chr7_1:57212420-57212439 Msa1025940:intron 40.0%
TGAACAGCTATCTGACCTAA+TGG + chr7_1:57212492-57212511 Msa1025940:intron 40.0%
GAACAGCTATCTGACCTAAT+GGG + chr7_1:57212493-57212512 Msa1025940:intron 40.0%
TATATATAAGCACCAGGGAG+AGG + chr7_1:57212524-57212543 Msa1025940:intron 40.0%
ATATATAAGCACCAGGGAGA+GGG + chr7_1:57212525-57212544 Msa1025940:intron 40.0%
AATTAGAAACGGGTCGTGAT+GGG - chr7_1:57212586-57212605 None:intergenic 40.0%
TAATTAGAAACGGGTCGTGA+TGG - chr7_1:57212587-57212606 None:intergenic 40.0%
TATAAGCACCAATAGGGAGA+GGG - chr7_1:57212764-57212783 None:intergenic 40.0%
ATATAAGCACCAATAGGGAG+AGG - chr7_1:57212765-57212784 None:intergenic 40.0%
!! ACTCTCATTCTAAAGGCATC+AGG + chr7_1:57212824-57212843 Msa1025940:intron 40.0%
!! TCATTCTAAAGGCATCAGGA+AGG + chr7_1:57212828-57212847 Msa1025940:intron 40.0%
!! CATTCTAAAGGCATCAGGAA+GGG + chr7_1:57212829-57212848 Msa1025940:intron 40.0%
TCTCAACCCTACTCTGTTTA+TGG + chr7_1:57212863-57212882 Msa1025940:intron 40.0%
GAGATGCCATAAACAGAGTA+GGG - chr7_1:57212872-57212891 None:intergenic 40.0%
TGAGATGCCATAAACAGAGT+AGG - chr7_1:57212873-57212892 None:intergenic 40.0%
TCGATTACCATCCATGATCA+AGG + chr7_1:57212902-57212921 Msa1025940:intron 40.0%
GTAAACGTTCACCTTGATCA+TGG - chr7_1:57212916-57212935 None:intergenic 40.0%
! CATGCATGAGATTTAAGGCA+AGG - chr7_1:57213396-57213415 None:intergenic 40.0%
CTTGCCTTAAATCTCATGCA+TGG + chr7_1:57213394-57213413 Msa1025940:intron 40.0%
GGAATGTAATTGTCACCGTT+AGG + chr7_1:57213422-57213441 Msa1025940:intron 40.0%
TGACAACACCAAAGCAGTTA+AGG - chr7_1:57213485-57213504 None:intergenic 40.0%
! GTACAAAGCAACTTGTTTGG+TGG + chr7_1:57213574-57213593 Msa1025940:intron 40.0%
! ACTTGTTTGGTGGTTGAGTT+TGG + chr7_1:57213584-57213603 Msa1025940:intron 40.0%
ATACTTAGCGGAAACTGAAC+GGG + chr7_1:57213746-57213765 Msa1025940:intron 40.0%
GTTTGGATTGACAGTGAATC+TGG - chr7_1:57213863-57213882 None:intergenic 40.0%
!! TTCTGGAACACAAAAGCTCA+GGG - chr7_1:57213903-57213922 None:intergenic 40.0%
!! TACTTTCTGGGGTGAGTTTA+TGG + chr7_1:57213944-57213963 Msa1025940:intron 40.0%
CTCACTAATGCAAAGACTCA+AGG - chr7_1:57213992-57214011 None:intergenic 40.0%
TCAGGTTAAATTGCCCTTTC+TGG + chr7_1:57214047-57214066 Msa1025940:intron 40.0%
CTGAAAGAACATCCATATGG+TGG - chr7_1:57214139-57214158 None:intergenic 40.0%
AGAGAGAAAGAGGCAGCTAT+CGG - chr7_1:57209571-57209590 None:intergenic 45.0%
GAGAGCAGTATAGGGAAAGA+TGG + chr7_1:57209829-57209848 Msa1025940:CDS 45.0%
GTATAGGGAAAGATGGCAAC+GGG + chr7_1:57209836-57209855 Msa1025940:CDS 45.0%
! AACGGGCGTTTTCCTTTATC+AGG + chr7_1:57209853-57209872 Msa1025940:CDS 45.0%
! ACGGGCGTTTTCCTTTATCA+GGG + chr7_1:57209854-57209873 Msa1025940:CDS 45.0%
TGGCAGATTGTGTGAAACGT+TGG + chr7_1:57209881-57209900 Msa1025940:CDS 45.0%
ATGCTTCGATGACCGCAATT+GGG - chr7_1:57210481-57210500 None:intergenic 45.0%
TATGCTTCGATGACCGCAAT+TGG - chr7_1:57210482-57210501 None:intergenic 45.0%
AAGGCTCACGACTGAAATCT+AGG - chr7_1:57210524-57210543 None:intergenic 45.0%
GTCATGTCTGGTGTTTGTGT+TGG - chr7_1:57210605-57210624 None:intergenic 45.0%
!! TCGCAAATCGGCTTTTGTCA+CGG - chr7_1:57210957-57210976 None:intergenic 45.0%
GAGAGGTTACCTAGGTTTAG+GGG - chr7_1:57211146-57211165 None:intergenic 45.0%
AGAAGGGGTTTAGTGATGAG+AGG - chr7_1:57211163-57211182 None:intergenic 45.0%
TCTCATCACTAAACCCCTTC+TGG + chr7_1:57211162-57211181 Msa1025940:intron 45.0%
TAGCGAATCGCGGAAAATAG+CGG - chr7_1:57211416-57211435 None:intergenic 45.0%
! CGCTATTGATAACACTGTCG+TGG + chr7_1:57211431-57211450 Msa1025940:intron 45.0%
TATTGCTTAGATTGCAGCCG+TGG + chr7_1:57211475-57211494 Msa1025940:intron 45.0%
!! TTTGGCTGACAAAAGCATCG+AGG + chr7_1:57211931-57211950 Msa1025940:CDS 45.0%
!! TTGGCTGACAAAAGCATCGA+GGG + chr7_1:57211932-57211951 Msa1025940:CDS 45.0%
!! TGACAAAAGCATCGAGGGTT+AGG + chr7_1:57211937-57211956 Msa1025940:CDS 45.0%
AAAGTTGGAGATAAGCGTCC+AGG + chr7_1:57211972-57211991 Msa1025940:CDS 45.0%
GTAAACGTGCAGCTTGATCA+TGG + chr7_1:57212374-57212393 Msa1025940:intron 45.0%
CTCATAGTAAGCATGCTGAG+AGG - chr7_1:57212552-57212571 None:intergenic 45.0%
CTCATAGTAAGCCTGTTGAG+AGG + chr7_1:57212737-57212756 Msa1025940:intron 45.0%
ACGTTCACCTTGATCATGGA+TGG - chr7_1:57212912-57212931 None:intergenic 45.0%
AAAGCTCAGGGCAACTAACT+TGG - chr7_1:57213891-57213910 None:intergenic 45.0%
!! CTTCTGGAACACAAAAGCTC+AGG - chr7_1:57213904-57213923 None:intergenic 45.0%
! CTGAGCTTTTGTGTTCCAGA+AGG + chr7_1:57213902-57213921 Msa1025940:intron 45.0%
GCTTCTTCATAGCCACCATA+TGG + chr7_1:57214124-57214143 Msa1025940:three_prime_UTR 45.0%
!!! TTTTTAATAAAATAAAGTTT+AGG - chr7_1:57209369-57209388 None:intergenic 5.0%
! CGGGCGTTTTCCTTTATCAG+GGG + chr7_1:57209855-57209874 Msa1025940:CDS 50.0%
TCTGCCACAACCCCTGATAA+AGG - chr7_1:57209868-57209887 None:intergenic 50.0%
ACTCTTAGGGAGGCTAAAGC+TGG + chr7_1:57209913-57209932 Msa1025940:CDS 50.0%
! TATCTGTGTCGGTGCTTCCT+AGG - chr7_1:57210201-57210220 None:intergenic 50.0%
CTACGTGTCAGTGTCATGTC+AGG - chr7_1:57210230-57210249 None:intergenic 50.0%
GCGAAGAATTGCAGCTGACA+TGG + chr7_1:57210454-57210473 Msa1025940:intron 50.0%
TGCTTCGATGACCGCAATTG+GGG - chr7_1:57210480-57210499 None:intergenic 50.0%
AGAAGAAGGAGAGCCAGAAG+GGG - chr7_1:57211178-57211197 None:intergenic 50.0%
GAGAAGAAGGAGAGCCAGAA+GGG - chr7_1:57211179-57211198 None:intergenic 50.0%
AGAGAAGAAGGAGAGCCAGA+AGG - chr7_1:57211180-57211199 None:intergenic 50.0%
AGCGAATCGCGGAAAATAGC+GGG - chr7_1:57211415-57211434 None:intergenic 50.0%
CGAGGGTTAGGTCTTCAGTT+TGG + chr7_1:57211949-57211968 Msa1025940:CDS 50.0%
ACGTGCAGCTTGATCATGGA+TGG + chr7_1:57212378-57212397 Msa1025940:intron 50.0%
TCTCGACCCTACTCTGTTCA+TGG - chr7_1:57212429-57212448 None:intergenic 50.0%
!! AGAAACGGGTCATGATGGGT+TGG + chr7_1:57212707-57212726 Msa1025940:intron 50.0%
! CACGGCCACTTTACGATGCT+TGG + chr7_1:57210427-57210446 Msa1025940:intron 55.0%
AGCTGACATGGCCCCAATTG+CGG + chr7_1:57210466-57210485 Msa1025940:intron 55.0%
TGTCAGCGTCGTGTCATGTC+TGG - chr7_1:57210617-57210636 None:intergenic 55.0%
TTGCGGTTGTGTTGCGATCG+TGG + chr7_1:57210857-57210876 Msa1025940:intron 55.0%
!! GAAACGGGTCGTGATGGGTT+GGG - chr7_1:57212581-57212600 None:intergenic 55.0%
!! AGAAACGGGTCGTGATGGGT+TGG - chr7_1:57212582-57212601 None:intergenic 55.0%
TGAGAGGTCCCTCTCCCTAT+TGG + chr7_1:57212753-57212772 Msa1025940:intron 55.0%
AGGGAGAGGGACCTCTCAAC+AGG - chr7_1:57212751-57212770 None:intergenic 60.0%
TTGGGATCACGGTGACTCCG+TGG + chr7_1:57213795-57213814 Msa1025940:intron 60.0%
TGCTGAGAGGTCCCTCTCCC+TGG - chr7_1:57212539-57212558 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 57209294 57214311 57209294 ID=Msa1025940;Name=Msa1025940
chr7_1 mRNA 57209294 57214311 57209294 ID=Msa1025940-mRNA-1;Parent=Msa1025940;Name=Msa1025940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=450|1|1|1|0.5|0.2|5|248|100
chr7_1 exon 57209294 57209679 57209294 ID=Msa1025940-mRNA-1:exon:11396;Parent=Msa1025940-mRNA-1
chr7_1 exon 57209762 57210008 57209762 ID=Msa1025940-mRNA-1:exon:11397;Parent=Msa1025940-mRNA-1
chr7_1 exon 57211924 57211993 57211924 ID=Msa1025940-mRNA-1:exon:11398;Parent=Msa1025940-mRNA-1
chr7_1 exon 57212082 57212168 57212082 ID=Msa1025940-mRNA-1:exon:11399;Parent=Msa1025940-mRNA-1
chr7_1 exon 57214101 57214311 57214101 ID=Msa1025940-mRNA-1:exon:11400;Parent=Msa1025940-mRNA-1
chr7_1 five_prime_UTR 57209294 57209679 57209294 ID=Msa1025940-mRNA-1:five_prime_utr;Parent=Msa1025940-mRNA-1
chr7_1 five_prime_UTR 57209762 57209825 57209762 ID=Msa1025940-mRNA-1:five_prime_utr;Parent=Msa1025940-mRNA-1
chr7_1 CDS 57209826 57210008 57209826 ID=Msa1025940-mRNA-1:cds;Parent=Msa1025940-mRNA-1
chr7_1 CDS 57211924 57211993 57211924 ID=Msa1025940-mRNA-1:cds;Parent=Msa1025940-mRNA-1
chr7_1 CDS 57212082 57212131 57212082 ID=Msa1025940-mRNA-1:cds;Parent=Msa1025940-mRNA-1
chr7_1 three_prime_UTR 57212132 57212168 57212132 ID=Msa1025940-mRNA-1:three_prime_utr;Parent=Msa1025940-mRNA-1
chr7_1 three_prime_UTR 57214101 57214311 57214101 ID=Msa1025940-mRNA-1:three_prime_utr;Parent=Msa1025940-mRNA-1
Gene Sequence

>Msa1025940

ATGGAGAGCAGTATAGGGAAAGATGGCAACGGGCGTTTTCCTTTATCAGGGGTTGTGGCAGATTGTGTGAAACGTTGGTTTAAGGATACTCTTAGGGAGGCTAAAGCTGGTGATGTTAATATGCAGATTTTGGTTGGTCAGATGTATTATAGTGGCTATGGTGTTGCAAAAGATGCTCAAAAGGGAAAACTTTGGCTGACAAAAGCATCGAGGGTTAGGTCTTCAGTTTGGAAAGTTGGAGATAAGCGTCCAGGTTATAATGCAAGTGATTCTGACTCTGATGAATCAAACGAGGATTCTTAA

Protein sequence

>Msa1025940

MESSIGKDGNGRFPLSGVVADCVKRWFKDTLREAKAGDVNMQILVGQMYYSGYGVAKDAQKGKLWLTKASRVRSSVWKVGDKRPGYNASDSDSDESNEDS*