AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076000 MtrunA17_Chr1g0170661 100.000 96 0 0 1 96 1 96 7.95e-67 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076000 AT1G72020.1 69.072 97 29 1 1 96 1 97 2.53e-45 141

Find 42 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCATATTGCATTAATA+TGG 0.223082 1_2:-51767359 None:intergenic
AACAATAATCAGATGGATTT+GGG 0.242746 1_2:+51767071 Msa0076000:three_prime_UTR
CTAGACTAGCATATTGGTTT+TGG 0.253646 1_2:+51767098 Msa0076000:three_prime_UTR
TAACAATAATCAGATGGATT+TGG 0.267194 1_2:+51767070 Msa0076000:three_prime_UTR
GTGAGGGATTTGACCTGATT+TGG 0.301994 1_2:-51765013 None:intergenic
CTTGGACAAGATGAAGTATC+AGG 0.339393 1_2:+51766926 Msa0076000:CDS
AATGTCCAAGCACAGATATT+TGG 0.348530 1_2:-51767216 None:intergenic
TTGATCAAGTTGGTTATTGC+AGG 0.354339 1_2:+51767305 Msa0076000:three_prime_UTR
TGATTATTACAAGAGATATA+TGG 0.396470 1_2:-51767179 None:intergenic
CATCTGATTATTGTTACAAA+TGG 0.398465 1_2:-51767063 None:intergenic
GGGATCCTAGACTAGCATAT+TGG 0.403278 1_2:+51767092 Msa0076000:three_prime_UTR
GAATCCTCCATCTCCAAATC+AGG 0.426967 1_2:+51765000 Msa0076000:CDS
CAGCAAAAGAAGACAGCATC+TGG 0.440272 1_2:+51767023 Msa0076000:CDS
AAGAACCACCACCTGAAAAC+AGG 0.448093 1_2:-51767274 None:intergenic
TTGTTAAGCTTGGCGAAACT+AGG 0.466604 1_2:+51764864 Msa0076000:five_prime_UTR
GAAACACAAATTTCTTTCGA+AGG 0.478060 1_2:+51764901 Msa0076000:five_prime_UTR
GTGTTCACAGCTTTCAGCAT+TGG 0.501579 1_2:+51766969 Msa0076000:CDS
TTCAACTGGCGTGAAGAGGA+TGG 0.515922 1_2:+51766848 Msa0076000:CDS
TTGACCTGATTTGGAGATGG+AGG 0.515967 1_2:-51765004 None:intergenic
CAAAACCAATATGCTAGTCT+AGG 0.520108 1_2:-51767097 None:intergenic
TGCATATCACATGTACAACT+TGG 0.529028 1_2:+51766908 Msa0076000:CDS
TGTTAAGCTTGGCGAAACTA+GGG 0.529654 1_2:+51764865 Msa0076000:five_prime_UTR
GATTTGACCTGATTTGGAGA+TGG 0.541306 1_2:-51765007 None:intergenic
ATGGAAAGAAACAAATCAGA+GGG 0.541693 1_2:-51767340 None:intergenic
TTCATTCAACTGGCGTGAAG+AGG 0.543901 1_2:+51766844 Msa0076000:CDS
AAGAGGATGGGAGGTGGACA+TGG 0.543948 1_2:+51766861 Msa0076000:CDS
TAATGCCAAATATCTGTGCT+TGG 0.545399 1_2:+51767211 Msa0076000:three_prime_UTR
GGCGTGAAGAGGATGGGAGG+TGG 0.551979 1_2:+51766855 Msa0076000:CDS
CTTGAAAGGAAATATAGACT+TGG 0.553076 1_2:+51767246 Msa0076000:three_prime_UTR
CATTTGTAACAATAATCAGA+TGG 0.565224 1_2:+51767064 Msa0076000:three_prime_UTR
TCAACTGGCGTGAAGAGGAT+GGG 0.574066 1_2:+51766849 Msa0076000:CDS
GCATATACTCTGGTTCGCTA+TGG 0.578575 1_2:-51766884 None:intergenic
TGGAAAATGACTGCATACAC+AGG 0.585917 1_2:-51767002 None:intergenic
TTGGACAAGATGAAGTATCA+GGG 0.612137 1_2:+51766927 Msa0076000:CDS
TATGGAAAGAAACAAATCAG+AGG 0.630206 1_2:-51767341 None:intergenic
ATAACGATGGCATTGAACAA+CGG 0.641834 1_2:+51764943 Msa0076000:exon
TATGTTGTGACAGTGAGTAG+AGG 0.651791 1_2:+51766819 Msa0076000:intron
TGATATGCATGCATATACTC+TGG 0.665333 1_2:-51766894 None:intergenic
ACAATAATCAGATGGATTTG+GGG 0.667145 1_2:+51767072 Msa0076000:three_prime_UTR
ACTGGCGTGAAGAGGATGGG+AGG 0.681452 1_2:+51766852 Msa0076000:CDS
AATCGAATTTGCGATAACGA+TGG 0.704958 1_2:+51764930 Msa0076000:exon
TGGAAAGAAACAAATCAGAG+GGG 0.753697 1_2:-51767339 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTGATTTATTAATAAA+TGG + chr1_2:51765143-51765162 Msa0076000:intron 10.0%
!!! TTTGTTTTTACTTTCAATTT+CGG + chr1_2:51765083-51765102 Msa0076000:intron 15.0%
!!! TTATATTAGGGTTTTTATTT+GGG + chr1_2:51765106-51765125 Msa0076000:intron 15.0%
!! TTGATTTATTAATAAATGGA+TGG + chr1_2:51765147-51765166 Msa0076000:intron 15.0%
!! TGATTTATTAATAAATGGAT+GGG + chr1_2:51765148-51765167 Msa0076000:intron 15.0%
!! TTATGGACATAAATAAATTA+AGG + chr1_2:51765793-51765812 Msa0076000:intron 15.0%
!!! AGTTTTATTTATGAATTACA+TGG + chr1_2:51765889-51765908 Msa0076000:intron 15.0%
!!! GTTTTATTTATGAATTACAT+GGG + chr1_2:51765890-51765909 Msa0076000:intron 15.0%
!! TTTGAAAGAAAAAAAAATCA+TGG - chr1_2:51766313-51766332 None:intergenic 15.0%
!! TTTCAATTTCGGTTATATTA+GGG + chr1_2:51765094-51765113 Msa0076000:intron 20.0%
!!! GTTATATTAGGGTTTTTATT+TGG + chr1_2:51765105-51765124 Msa0076000:intron 20.0%
!!! TATATTAGGGTTTTTATTTG+GGG + chr1_2:51765107-51765126 Msa0076000:intron 20.0%
!!! TTTTAAATTAAGTAGCGATT+AGG + chr1_2:51765188-51765207 Msa0076000:intron 20.0%
!!! TTGTTGATAAATGTGTTATT+TGG + chr1_2:51765257-51765276 Msa0076000:intron 20.0%
!! TTATTTGACAATTGAACATA+TGG + chr1_2:51765718-51765737 Msa0076000:intron 20.0%
!! AATAAATTAAGGTAGGAATT+TGG + chr1_2:51765804-51765823 Msa0076000:intron 20.0%
!! ATAAATTAAGGTAGGAATTT+GGG + chr1_2:51765805-51765824 Msa0076000:intron 20.0%
!!! GTTCATGTTTAATTTTCATA+TGG + chr1_2:51767151-51767170 Msa0076000:three_prime_UTR 20.0%
!! TGATTATTACAAGAGATATA+TGG - chr1_2:51767182-51767201 None:intergenic 20.0%
! CTTTCAATTTCGGTTATATT+AGG + chr1_2:51765093-51765112 Msa0076000:intron 25.0%
!!! ATATTAGGGTTTTTATTTGG+GGG + chr1_2:51765108-51765127 Msa0076000:intron 25.0%
!!! TTGTGGTTTTGTTTATATTG+TGG + chr1_2:51765211-51765230 Msa0076000:intron 25.0%
! GATTGAGTTTCATTTAGTTA+AGG + chr1_2:51765756-51765775 Msa0076000:intron 25.0%
! GGACATAAATAAATTAAGGT+AGG + chr1_2:51765797-51765816 Msa0076000:intron 25.0%
! GAATGTTATCAATGATACTA+TGG - chr1_2:51765859-51765878 None:intergenic 25.0%
! AATTAACGGCTTAGATTAAA+TGG + chr1_2:51765979-51765998 Msa0076000:intron 25.0%
! ACATAAGAACAACTATTCAA+TGG + chr1_2:51766202-51766221 Msa0076000:intron 25.0%
! CATAAGAACAACTATTCAAT+GGG + chr1_2:51766203-51766222 Msa0076000:intron 25.0%
!!! TCTCTTGTTTTAAGATGATT+AGG + chr1_2:51766752-51766771 Msa0076000:intron 25.0%
! CATCTGATTATTGTTACAAA+TGG - chr1_2:51767066-51767085 None:intergenic 25.0%
! CATTTGTAACAATAATCAGA+TGG + chr1_2:51767064-51767083 Msa0076000:three_prime_UTR 25.0%
!! TAACAATAATCAGATGGATT+TGG + chr1_2:51767070-51767089 Msa0076000:three_prime_UTR 25.0%
!! AACAATAATCAGATGGATTT+GGG + chr1_2:51767071-51767090 Msa0076000:three_prime_UTR 25.0%
! GGAATCATATTGCATTAATA+TGG - chr1_2:51767362-51767381 None:intergenic 25.0%
GAAACACAAATTTCTTTCGA+AGG + chr1_2:51764901-51764920 Msa0076000:five_prime_UTR 30.0%
AAATCTTCCTCAACAGTAAT+CGG - chr1_2:51765058-51765077 None:intergenic 30.0%
!! TTTGATAACGATGTTGTTGA+AGG + chr1_2:51765304-51765323 Msa0076000:intron 30.0%
GATGTTGTTGAAGGATATTT+CGG + chr1_2:51765313-51765332 Msa0076000:intron 30.0%
!! TAGCTTTGTTTCATTCTGTT+AGG + chr1_2:51765559-51765578 Msa0076000:intron 30.0%
ATTTAAATCCAGCGAAAACA+TGG - chr1_2:51765668-51765687 None:intergenic 30.0%
ACTAAATGAAACTCAATCAC+AGG - chr1_2:51765754-51765773 None:intergenic 30.0%
! AGGCTTCATTGTTGTTATTA+TGG + chr1_2:51765776-51765795 Msa0076000:intron 30.0%
! GTAGGAATTTGGGTTTAATT+AGG + chr1_2:51765815-51765834 Msa0076000:intron 30.0%
GGTTTAATTAGGTCATTATC+TGG + chr1_2:51765826-51765845 Msa0076000:intron 30.0%
GCCATTGGATTAACAATTAA+CGG + chr1_2:51765965-51765984 Msa0076000:intron 30.0%
!! TTGTACATTTTGATCCAAGA+TGG - chr1_2:51766069-51766088 None:intergenic 30.0%
TTCAGAATTAAACTCTTGGA+AGG + chr1_2:51766226-51766245 Msa0076000:intron 30.0%
TCAGAATTAAACTCTTGGAA+GGG + chr1_2:51766227-51766246 Msa0076000:intron 30.0%
AGTGAGAAAAAATGCATCAA+TGG + chr1_2:51766262-51766281 Msa0076000:intron 30.0%
AGAAAAAATGCATCAATGGT+GGG + chr1_2:51766266-51766285 Msa0076000:intron 30.0%
! ATATTTTGTATGCCCAATCA+AGG - chr1_2:51766621-51766640 None:intergenic 30.0%
TGATTGGGCATACAAAATAT+TGG + chr1_2:51766621-51766640 Msa0076000:intron 30.0%
!!! AGCCATCTATTTTAATCCAA+TGG + chr1_2:51766677-51766696 Msa0076000:intron 30.0%
AGCCATTGGATTAAAATAGA+TGG - chr1_2:51766682-51766701 None:intergenic 30.0%
! TTTTTACGTGGAAATGAAAG+AGG - chr1_2:51766713-51766732 None:intergenic 30.0%
!!! TGAGAATGACTTTTTTTACG+TGG - chr1_2:51766725-51766744 None:intergenic 30.0%
! ACAATAATCAGATGGATTTG+GGG + chr1_2:51767072-51767091 Msa0076000:three_prime_UTR 30.0%
! GGACATTTTTATGTCTTGAA+AGG + chr1_2:51767232-51767251 Msa0076000:three_prime_UTR 30.0%
CTTGAAAGGAAATATAGACT+TGG + chr1_2:51767246-51767265 Msa0076000:three_prime_UTR 30.0%
!!! TTCAGTAGTTTTGATCAAGT+TGG + chr1_2:51767295-51767314 Msa0076000:three_prime_UTR 30.0%
ATGGAAAGAAACAAATCAGA+GGG - chr1_2:51767343-51767362 None:intergenic 30.0%
TATGGAAAGAAACAAATCAG+AGG - chr1_2:51767344-51767363 None:intergenic 30.0%
! CGGAAACATTTTGTTAAGCT+TGG + chr1_2:51764854-51764873 Msa0076000:five_prime_UTR 35.0%
AATCGAATTTGCGATAACGA+TGG + chr1_2:51764930-51764949 Msa0076000:exon 35.0%
! ATAACGATGGCATTGAACAA+CGG + chr1_2:51764943-51764962 Msa0076000:exon 35.0%
TCACATGAAAGAAAAGGTGA+GGG - chr1_2:51765032-51765051 None:intergenic 35.0%
TTCACATGAAAGAAAAGGTG+AGG - chr1_2:51765033-51765052 None:intergenic 35.0%
CGGATTTCACATGAAAGAAA+AGG - chr1_2:51765038-51765057 None:intergenic 35.0%
! ATTAAGTAGCGATTAGGTTG+TGG + chr1_2:51765194-51765213 Msa0076000:intron 35.0%
AGACTATTCTAGTGACTGAT+AGG + chr1_2:51765354-51765373 Msa0076000:intron 35.0%
CTAATAACACCAACCTTAGA+GGG + chr1_2:51765453-51765472 Msa0076000:intron 35.0%
TTCAAAACAAAAGCCCTCTA+AGG - chr1_2:51765469-51765488 None:intergenic 35.0%
!!! GAGGGCTTTTGTTTTGAAAA+CGG + chr1_2:51765471-51765490 Msa0076000:intron 35.0%
!!! CTTTTGTTTTGAAAACGGTG+TGG + chr1_2:51765476-51765495 Msa0076000:intron 35.0%
TTCACTTATGCGAAAACTTG+AGG - chr1_2:51765606-51765625 None:intergenic 35.0%
TTCGCATAAGTGAATAGCTT+TGG + chr1_2:51765612-51765631 Msa0076000:intron 35.0%
CCTCTAACTCTCACATAAAA+AGG - chr1_2:51765935-51765954 None:intergenic 35.0%
! CCTTTTTATGTGAGAGTTAG+AGG + chr1_2:51765932-51765951 Msa0076000:intron 35.0%
GCCGTTAATTGTTAATCCAA+TGG - chr1_2:51765969-51765988 None:intergenic 35.0%
!! ATTTTGATCCAAGATGGCAA+TGG - chr1_2:51766063-51766082 None:intergenic 35.0%
TGGGTTCAGAATTAAACTCT+TGG + chr1_2:51766222-51766241 Msa0076000:intron 35.0%
GAGAAAAAATGCATCAATGG+TGG + chr1_2:51766265-51766284 Msa0076000:intron 35.0%
GAAAAAATGCATCAATGGTG+GGG + chr1_2:51766267-51766286 Msa0076000:intron 35.0%
AAAAAATGCATCAATGGTGG+GGG + chr1_2:51766268-51766287 Msa0076000:intron 35.0%
! AAAACATTCTATGCTGGTTG+TGG + chr1_2:51766508-51766527 Msa0076000:intron 35.0%
! AAACATTCTATGCTGGTTGT+GGG + chr1_2:51766509-51766528 Msa0076000:intron 35.0%
AAAGCTAACAATATCGCCAT+TGG + chr1_2:51766536-51766555 Msa0076000:intron 35.0%
ATGTTAACACAGTCCTTGAT+TGG + chr1_2:51766605-51766624 Msa0076000:intron 35.0%
TGTTAACACAGTCCTTGATT+GGG + chr1_2:51766606-51766625 Msa0076000:intron 35.0%
! AGTAGAGGTTTTCATTCAAC+TGG + chr1_2:51766834-51766853 Msa0076000:CDS 35.0%
TGATATGCATGCATATACTC+TGG - chr1_2:51766897-51766916 None:intergenic 35.0%
TGCATATCACATGTACAACT+TGG + chr1_2:51766908-51766927 Msa0076000:CDS 35.0%
! TTGGACAAGATGAAGTATCA+GGG + chr1_2:51766927-51766946 Msa0076000:CDS 35.0%
! CAAAACCAATATGCTAGTCT+AGG - chr1_2:51767100-51767119 None:intergenic 35.0%
!!! CTAGACTAGCATATTGGTTT+TGG + chr1_2:51767098-51767117 Msa0076000:three_prime_UTR 35.0%
TAATGCCAAATATCTGTGCT+TGG + chr1_2:51767211-51767230 Msa0076000:three_prime_UTR 35.0%
AATGTCCAAGCACAGATATT+TGG - chr1_2:51767219-51767238 None:intergenic 35.0%
!! TTGATCAAGTTGGTTATTGC+AGG + chr1_2:51767305-51767324 Msa0076000:three_prime_UTR 35.0%
TGGAAAGAAACAAATCAGAG+GGG - chr1_2:51767342-51767361 None:intergenic 35.0%
TTGTTAAGCTTGGCGAAACT+AGG + chr1_2:51764864-51764883 Msa0076000:five_prime_UTR 40.0%
TGTTAAGCTTGGCGAAACTA+GGG + chr1_2:51764865-51764884 Msa0076000:five_prime_UTR 40.0%
!! GATTTGACCTGATTTGGAGA+TGG - chr1_2:51765010-51765029 None:intergenic 40.0%
GTGAAATCCGATTACTGTTG+AGG + chr1_2:51765048-51765067 Msa0076000:intron 40.0%
!! CCTCTAAGGTTGGTGTTATT+AGG - chr1_2:51765455-51765474 None:intergenic 40.0%
CCTAATAACACCAACCTTAG+AGG + chr1_2:51765452-51765471 Msa0076000:intron 40.0%
!! AAACAAAAGCCCTCTAAGGT+TGG - chr1_2:51765465-51765484 None:intergenic 40.0%
CGAAAACATGGACAGCAATA+AGG - chr1_2:51765656-51765675 None:intergenic 40.0%
TTGTTAATCCAATGGCTACC+AGG - chr1_2:51765961-51765980 None:intergenic 40.0%
GTGAAGATAAGTGTCATGTG+AGG - chr1_2:51766017-51766036 None:intergenic 40.0%
TGATTCATGCGAAACATCCA+AGG - chr1_2:51766123-51766142 None:intergenic 40.0%
ATCTTCGTTAGTGGCATAGT+TGG + chr1_2:51766381-51766400 Msa0076000:intron 40.0%
ATACAAAATATTGGCGCGTG+AGG + chr1_2:51766630-51766649 Msa0076000:intron 40.0%
! AAGAGGTTCTAGTTAGCCAT+TGG - chr1_2:51766696-51766715 None:intergenic 40.0%
TATGTTGTGACAGTGAGTAG+AGG + chr1_2:51766819-51766838 Msa0076000:intron 40.0%
! CTTGGACAAGATGAAGTATC+AGG + chr1_2:51766926-51766945 Msa0076000:CDS 40.0%
TGGAAAATGACTGCATACAC+AGG - chr1_2:51767005-51767024 None:intergenic 40.0%
! ACTTGGAATGTCCTGTTTTC+AGG + chr1_2:51767263-51767282 Msa0076000:three_prime_UTR 40.0%
GAATCCTCCATCTCCAAATC+AGG + chr1_2:51765000-51765019 Msa0076000:CDS 45.0%
!! TTGACCTGATTTGGAGATGG+AGG - chr1_2:51765007-51765026 None:intergenic 45.0%
GTGAGGGATTTGACCTGATT+TGG - chr1_2:51765016-51765035 None:intergenic 45.0%
!! GGATGAGAAGTGTTTGAGCT+TGG + chr1_2:51765401-51765420 Msa0076000:intron 45.0%
TGAAAACGGTGTGGAAGTGA+AGG + chr1_2:51765485-51765504 Msa0076000:intron 45.0%
AAGGAGTCGGACGAATATGA+AGG + chr1_2:51765504-51765523 Msa0076000:intron 45.0%
AGGAGTCGGACGAATATGAA+GGG + chr1_2:51765505-51765524 Msa0076000:intron 45.0%
! ATTGCTGTCCATGTTTTCGC+TGG + chr1_2:51765657-51765676 Msa0076000:intron 45.0%
TGTGAGAGTTAGAGGATTCC+TGG + chr1_2:51765940-51765959 Msa0076000:intron 45.0%
AATGTCTGTGAGATTGCGTG+AGG - chr1_2:51766100-51766119 None:intergenic 45.0%
GCAATCTCACAGACATTCCT+TGG + chr1_2:51766103-51766122 Msa0076000:intron 45.0%
TCTCACGCACATTCACATCT+TGG - chr1_2:51766345-51766364 None:intergenic 45.0%
ATGCTTGGCATCTTCGTTAG+TGG + chr1_2:51766372-51766391 Msa0076000:intron 45.0%
GTTAGTGGCATAGTTGGTTG+TGG + chr1_2:51766387-51766406 Msa0076000:intron 45.0%
TTCCTCTCCAACTACTGTTG+AGG + chr1_2:51766441-51766460 Msa0076000:intron 45.0%
! TTTGGAGCCTCAACAGTAGT+TGG - chr1_2:51766451-51766470 None:intergenic 45.0%
!!! TGAAATGGGGATGCTGGTTT+TGG - chr1_2:51766469-51766488 None:intergenic 45.0%
AACCAGCATCCCCATTTCAA+TGG + chr1_2:51766470-51766489 Msa0076000:intron 45.0%
GATGCCACACCATTGAAATG+GGG - chr1_2:51766482-51766501 None:intergenic 45.0%
CGATGCCACACCATTGAAAT+GGG - chr1_2:51766483-51766502 None:intergenic 45.0%
CCATTTCAATGGTGTGGCAT+CGG + chr1_2:51766481-51766500 Msa0076000:intron 45.0%
GGCTGGAAAACATTCTATGC+TGG + chr1_2:51766502-51766521 Msa0076000:intron 45.0%
GCTAACAATATCGCCATTGG+TGG + chr1_2:51766539-51766558 Msa0076000:intron 45.0%
! ACAATATCGCCATTGGTGGT+AGG + chr1_2:51766543-51766562 Msa0076000:intron 45.0%
GAGGGGATGAATCAGTTTCA+GGG + chr1_2:51766578-51766597 Msa0076000:intron 45.0%
AGGGGATGAATCAGTTTCAG+GGG + chr1_2:51766579-51766598 Msa0076000:intron 45.0%
TTCATTCAACTGGCGTGAAG+AGG + chr1_2:51766844-51766863 Msa0076000:CDS 45.0%
! GCATATACTCTGGTTCGCTA+TGG - chr1_2:51766887-51766906 None:intergenic 45.0%
GTGTTCACAGCTTTCAGCAT+TGG + chr1_2:51766969-51766988 Msa0076000:CDS 45.0%
! CAGATGCTGTCTTCTTTTGC+TGG - chr1_2:51767025-51767044 None:intergenic 45.0%
CAGCAAAAGAAGACAGCATC+TGG + chr1_2:51767023-51767042 Msa0076000:CDS 45.0%
GGGATCCTAGACTAGCATAT+TGG + chr1_2:51767092-51767111 Msa0076000:three_prime_UTR 45.0%
!! TGGAATGTCCTGTTTTCAGG+TGG + chr1_2:51767266-51767285 Msa0076000:three_prime_UTR 45.0%
!!! AATGTCCTGTTTTCAGGTGG+TGG + chr1_2:51767269-51767288 Msa0076000:three_prime_UTR 45.0%
AAGAACCACCACCTGAAAAC+AGG - chr1_2:51767277-51767296 None:intergenic 45.0%
!!! TTTTTTTTTTTTTATCTAAA+TGG + chr1_2:51765380-51765399 Msa0076000:intron 5.0%
GGAGTCGGACGAATATGAAG+GGG + chr1_2:51765506-51765525 Msa0076000:intron 50.0%
AGAGGATTCCTGGTAGCCAT+TGG + chr1_2:51765950-51765969 Msa0076000:intron 50.0%
AAGATGGCAATGGCAACAGG+AGG - chr1_2:51766053-51766072 None:intergenic 50.0%
TCCTGTTGCCATTGCCATCT+TGG + chr1_2:51766052-51766071 Msa0076000:intron 50.0%
TCCAAGATGGCAATGGCAAC+AGG - chr1_2:51766056-51766075 None:intergenic 50.0%
TCTGTGAGATTGCGTGAGGA+TGG - chr1_2:51766096-51766115 None:intergenic 50.0%
GCGTGAGAGAGTTGTATGCT+TGG + chr1_2:51766357-51766376 Msa0076000:intron 50.0%
AGTGGCATAGTTGGTTGTGG+TGG + chr1_2:51766390-51766409 Msa0076000:intron 50.0%
AACCCTGTTGCTCGCTTGAT+GGG - chr1_2:51766423-51766442 None:intergenic 50.0%
AGCCTCAACAGTAGTTGGAG+AGG - chr1_2:51766446-51766465 None:intergenic 50.0%
CACCATTGAAATGGGGATGC+TGG - chr1_2:51766475-51766494 None:intergenic 50.0%
GCATCCCCATTTCAATGGTG+TGG + chr1_2:51766475-51766494 Msa0076000:intron 50.0%
CCGATGCCACACCATTGAAA+TGG - chr1_2:51766484-51766503 None:intergenic 50.0%
! ACTGATTCATCCCCTCCCAT+GGG - chr1_2:51766574-51766593 None:intergenic 50.0%
! AACTGATTCATCCCCTCCCA+TGG - chr1_2:51766575-51766594 None:intergenic 50.0%
GGAGGGGATGAATCAGTTTC+AGG + chr1_2:51766577-51766596 Msa0076000:intron 50.0%
TTCAACTGGCGTGAAGAGGA+TGG + chr1_2:51766848-51766867 Msa0076000:CDS 50.0%
TCAACTGGCGTGAAGAGGAT+GGG + chr1_2:51766849-51766868 Msa0076000:CDS 50.0%
CGGTGTGGAAGTGAAGGAGT+CGG + chr1_2:51765491-51765510 Msa0076000:intron 55.0%
ATCCCCATCAAGCGAGCAAC+AGG + chr1_2:51766417-51766436 Msa0076000:intron 55.0%
TCCCCATCAAGCGAGCAACA+GGG + chr1_2:51766418-51766437 Msa0076000:intron 55.0%
ACCCTGTTGCTCGCTTGATG+GGG - chr1_2:51766422-51766441 None:intergenic 55.0%
GAACCCTGTTGCTCGCTTGA+TGG - chr1_2:51766424-51766443 None:intergenic 55.0%
!! TTCAATGGTGTGGCATCGGC+TGG + chr1_2:51766485-51766504 Msa0076000:intron 55.0%
! ATCGCCATTGGTGGTAGGTG+TGG + chr1_2:51766548-51766567 Msa0076000:intron 55.0%
AAGAGGATGGGAGGTGGACA+TGG + chr1_2:51766861-51766880 Msa0076000:CDS 55.0%
TGGGCCACACCTACCACCAA+TGG - chr1_2:51766555-51766574 None:intergenic 60.0%
! TTGGTGGTAGGTGTGGCCCA+TGG + chr1_2:51766555-51766574 Msa0076000:intron 60.0%
TGGTGGTAGGTGTGGCCCAT+GGG + chr1_2:51766556-51766575 Msa0076000:intron 60.0%
ACTGGCGTGAAGAGGATGGG+AGG + chr1_2:51766852-51766871 Msa0076000:CDS 60.0%
TGGTAGGTGTGGCCCATGGG+AGG + chr1_2:51766559-51766578 Msa0076000:intron 65.0%
GGTAGGTGTGGCCCATGGGA+GGG + chr1_2:51766560-51766579 Msa0076000:intron 65.0%
GTAGGTGTGGCCCATGGGAG+GGG + chr1_2:51766561-51766580 Msa0076000:intron 65.0%
GGCGTGAAGAGGATGGGAGG+TGG + chr1_2:51766855-51766874 Msa0076000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51764844 51767394 51764844 ID=Msa0076000;Name=Msa0076000
chr1_2 mRNA 51764844 51767394 51764844 ID=Msa0076000-mRNA-1;Parent=Msa0076000;Name=Msa0076000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|345|96
chr1_2 exon 51764844 51765021 51764844 ID=Msa0076000-mRNA-1:exon:15925;Parent=Msa0076000-mRNA-1
chr1_2 exon 51766832 51767394 51766832 ID=Msa0076000-mRNA-1:exon:15926;Parent=Msa0076000-mRNA-1
chr1_2 five_prime_UTR 51764844 51764948 51764844 ID=Msa0076000-mRNA-1:five_prime_utr;Parent=Msa0076000-mRNA-1
chr1_2 CDS 51764949 51765021 51764949 ID=Msa0076000-mRNA-1:cds;Parent=Msa0076000-mRNA-1
chr1_2 CDS 51766832 51767049 51766832 ID=Msa0076000-mRNA-1:cds;Parent=Msa0076000-mRNA-1
chr1_2 three_prime_UTR 51767050 51767394 51767050 ID=Msa0076000-mRNA-1:three_prime_utr;Parent=Msa0076000-mRNA-1
Gene Sequence

>Msa0076000

ATGGCATTGAACAACGGTCTCAGATCTGCTGCGAAGCTAATTGCTTCTTCTGAATCCTCCATCTCCAAATCAGTGAGTAGAGGTTTTCATTCAACTGGCGTGAAGAGGATGGGAGGTGGACATGGCCATAGCGAACCAGAGTATATGCATGCATATCACATGTACAACTTGGACAAGATGAAGTATCAGGGTTTGAAAATGTCTCTTGCTGTGTTCACAGCTTTCAGCATTGGTGTTGCAGTTCCTGTGTATGCAGTCATTTTCCAGCAAAAGAAGACAGCATCTGGCTGA

Protein sequence

>Msa0076000

MALNNGLRSAAKLIASSESSISKSVSRGFHSTGVKRMGGGHGHSEPEYMHAYHMYNLDKMKYQGLKMSLAVFTAFSIGVAVPVYAVIFQQKKTASG*