Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896290 | PNX71866.1 | 70.098 | 204 | 10 | 2 | 1 | 153 | 55 | 258 | 1.61e-88 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896290 | sp|Q9LDR2|CNG19_ARATH | 52.000 | 200 | 49 | 2 | 1 | 153 | 492 | 691 | 1.00e-59 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018620 | Msa0896290 | 0.803206 | 3.894203e-49 | -8.615850e-47 |
| Msa0057140 | Msa0896290 | 0.808041 | 3.762781e-50 | -8.615850e-47 |
| Msa0603670 | Msa0896290 | 0.808235 | 3.421200e-50 | -8.615850e-47 |
| Msa0617580 | Msa0896290 | 0.803552 | 3.301450e-49 | -8.615850e-47 |
| Msa0638070 | Msa0896290 | 0.812895 | 3.368432e-51 | -8.615850e-47 |
| Msa0651150 | Msa0896290 | 0.802559 | 5.298016e-49 | -8.615850e-47 |
| Msa0661090 | Msa0896290 | 0.827875 | 1.228819e-54 | -8.615850e-47 |
| Msa0682950 | Msa0896290 | 0.807274 | 5.476077e-50 | -8.615850e-47 |
| Msa0735310 | Msa0896290 | 0.800862 | 1.181246e-48 | -8.615850e-47 |
| Msa0743740 | Msa0896290 | 0.812278 | 4.595203e-51 | -8.615850e-47 |
| Msa0814250 | Msa0896290 | 0.816205 | 6.233623e-52 | -8.615850e-47 |
| Msa0814320 | Msa0896290 | 0.819195 | 1.319235e-52 | -8.615850e-47 |
| Msa0165300 | Msa0896290 | 0.806416 | 8.315002e-50 | -8.615850e-47 |
| Msa0173990 | Msa0896290 | 0.801733 | 7.834801e-49 | -8.615850e-47 |
| Msa0177230 | Msa0896290 | 0.806816 | 6.843848e-50 | -8.615850e-47 |
| Msa0205850 | Msa0896290 | 0.802205 | 6.264343e-49 | -8.615850e-47 |
| Msa0217740 | Msa0896290 | 0.806463 | 8.127227e-50 | -8.615850e-47 |
| Msa0227400 | Msa0896290 | 0.811513 | 6.741665e-51 | -8.615850e-47 |
| Msa0402330 | Msa0896290 | 0.817774 | 2.769591e-52 | -8.615850e-47 |
| Msa0426330 | Msa0896290 | 0.817818 | 2.707732e-52 | -8.615850e-47 |
| Msa0439890 | Msa0896290 | 0.808265 | 3.371673e-50 | -8.615850e-47 |
| Msa0464900 | Msa0896290 | 0.803992 | 2.674517e-49 | -8.615850e-47 |
| Msa0245850 | Msa0896290 | 0.809614 | 1.734628e-50 | -8.615850e-47 |
| Msa0271810 | Msa0896290 | 0.802824 | 4.670976e-49 | -8.615850e-47 |
| Msa0310410 | Msa0896290 | 0.819833 | 9.434822e-53 | -8.615850e-47 |
| Msa0355270 | Msa0896290 | 0.814355 | 1.607418e-51 | -8.615850e-47 |
| Msa0513440 | Msa0896290 | 0.800878 | 1.172123e-48 | -8.615850e-47 |
| Msa0526890 | Msa0896290 | 0.826416 | 2.745086e-54 | -8.615850e-47 |
| Msa0542160 | Msa0896290 | 0.801968 | 7.010107e-49 | -8.615850e-47 |
| Msa0547400 | Msa0896290 | 0.800246 | 1.577065e-48 | -8.615850e-47 |
| Msa0602120 | Msa0896290 | 0.812773 | 3.581045e-51 | -8.615850e-47 |
| Msa0850960 | Msa0896290 | 0.807989 | 3.860934e-50 | -8.615850e-47 |
| Msa0896290 | Msa0959010 | 0.804487 | 2.110417e-49 | -8.615850e-47 |
| Msa0896290 | Msa0967370 | 0.819208 | 1.310378e-52 | -8.615850e-47 |
| Msa0896290 | Msa0993530 | 0.801774 | 7.683817e-49 | -8.615850e-47 |
| Msa0896290 | Msa1040890 | 0.817461 | 3.258283e-52 | -8.615850e-47 |
| Msa0896290 | Msa1113590 | 0.819367 | 1.205474e-52 | -8.615850e-47 |
| Msa0896290 | Msa1127830 | 0.831116 | 2.003601e-55 | -8.615850e-47 |
| Msa0896290 | Msa1314100 | 0.803439 | 3.484243e-49 | -8.615850e-47 |
| Msa0896290 | Msa1372310 | 0.816951 | 4.242853e-52 | -8.615850e-47 |
| Msa0896290 | Msa1386230 | 0.803129 | 4.039010e-49 | -8.615850e-47 |
| Msa0896290 | Msa1390230 | 0.803562 | 3.285821e-49 | -8.615850e-47 |
| Msa0896290 | Msa1415940 | 0.810392 | 1.179061e-50 | -8.615850e-47 |
| Msa0896290 | Msa1422840 | 0.806574 | 7.698855e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896290 | MtrunA17_Chr6g0480851 | 73.529 | 204 | 3 | 2 | 1 | 153 | 518 | 721 | 5.86e-92 | 282 |
| Msa0896290 | MtrunA17_Chr5g0395421 | 68.627 | 204 | 13 | 2 | 1 | 153 | 149 | 352 | 9.74e-90 | 266 |
| Msa0896290 | MtrunA17_Chr6g0480781 | 63.235 | 204 | 24 | 2 | 1 | 153 | 503 | 706 | 6.80e-77 | 243 |
| Msa0896290 | MtrunA17_Chr6g0480741 | 59.204 | 201 | 31 | 2 | 4 | 153 | 449 | 649 | 4.01e-73 | 231 |
| Msa0896290 | MtrunA17_Chr6g0481021 | 55.000 | 200 | 41 | 2 | 1 | 151 | 464 | 663 | 1.11e-62 | 204 |
| Msa0896290 | MtrunA17_Chr6g0480771 | 50.980 | 204 | 46 | 3 | 1 | 153 | 29 | 229 | 1.58e-57 | 181 |
| Msa0896290 | MtrunA17_Chr6g0480671 | 56.436 | 202 | 39 | 3 | 1 | 153 | 529 | 730 | 3.54e-56 | 187 |
| Msa0896290 | MtrunA17_Chr6g0480681 | 50.746 | 201 | 45 | 3 | 4 | 153 | 477 | 674 | 1.12e-55 | 186 |
| Msa0896290 | MtrunA17_Chr6g0480841 | 55.090 | 167 | 24 | 2 | 38 | 153 | 2 | 168 | 7.85e-51 | 161 |
| Msa0896290 | MtrunA17_Chr4g0073941 | 36.224 | 196 | 78 | 5 | 1 | 150 | 437 | 631 | 1.62e-25 | 101 |
| Msa0896290 | MtrunA17_Chr3g0125651 | 33.333 | 195 | 83 | 5 | 2 | 150 | 378 | 571 | 3.21e-25 | 100 |
| Msa0896290 | MtrunA17_Chr2g0305771 | 35.714 | 196 | 77 | 5 | 2 | 150 | 386 | 579 | 2.27e-24 | 97.8 |
| Msa0896290 | MtrunA17_Chr4g0001481 | 35.533 | 197 | 78 | 5 | 1 | 150 | 442 | 636 | 2.71e-24 | 97.8 |
| Msa0896290 | MtrunA17_Chr3g0139071 | 35.385 | 195 | 79 | 5 | 2 | 150 | 416 | 609 | 5.05e-23 | 94.0 |
| Msa0896290 | MtrunA17_Chr7g0275581 | 31.122 | 196 | 89 | 4 | 1 | 150 | 420 | 615 | 1.31e-22 | 92.8 |
| Msa0896290 | MtrunA17_Chr7g0228181 | 34.359 | 195 | 81 | 6 | 2 | 150 | 386 | 579 | 1.57e-22 | 92.8 |
| Msa0896290 | MtrunA17_Chr3g0126541 | 34.574 | 188 | 77 | 5 | 1 | 142 | 415 | 602 | 1.10e-21 | 90.5 |
| Msa0896290 | MtrunA17_Chr1g0158861 | 32.447 | 188 | 81 | 4 | 1 | 142 | 417 | 604 | 3.16e-21 | 89.0 |
| Msa0896290 | MtrunA17_Chr8g0347121 | 31.633 | 196 | 88 | 4 | 1 | 150 | 399 | 594 | 4.80e-21 | 88.6 |
| Msa0896290 | MtrunA17_Chr1g0181121 | 32.804 | 189 | 79 | 4 | 2 | 143 | 379 | 566 | 4.06e-20 | 85.9 |
| Msa0896290 | MtrunA17_Chr4g0028861 | 32.240 | 183 | 76 | 4 | 7 | 142 | 464 | 645 | 4.70e-20 | 85.5 |
| Msa0896290 | MtrunA17_Chr2g0326871 | 31.694 | 183 | 77 | 5 | 7 | 142 | 417 | 598 | 1.43e-18 | 81.3 |
| Msa0896290 | MtrunA17_Chr2g0318561 | 31.579 | 190 | 74 | 5 | 1 | 140 | 229 | 412 | 1.07e-16 | 75.9 |
| Msa0896290 | MtrunA17_Chr8g0360821 | 31.579 | 190 | 74 | 5 | 1 | 140 | 406 | 589 | 1.41e-15 | 72.8 |
| Msa0896290 | MtrunA17_Chr7g0218341 | 30.435 | 184 | 84 | 3 | 1 | 140 | 454 | 637 | 5.87e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896290 | AT3G17690.1 | 52.000 | 200 | 49 | 2 | 1 | 153 | 492 | 691 | 1.02e-60 | 199 |
| Msa0896290 | AT3G17700.1 | 50.495 | 202 | 51 | 2 | 1 | 153 | 525 | 726 | 1.24e-58 | 194 |
| Msa0896290 | AT3G17690.2 | 53.030 | 132 | 29 | 1 | 1 | 99 | 492 | 623 | 6.37e-39 | 139 |
| Msa0896290 | AT3G17700.2 | 52.273 | 132 | 30 | 1 | 1 | 99 | 525 | 656 | 6.49e-38 | 136 |
| Msa0896290 | AT4G30360.1 | 36.923 | 195 | 76 | 5 | 2 | 150 | 413 | 606 | 5.05e-27 | 105 |
| Msa0896290 | AT5G57940.1 | 37.755 | 196 | 75 | 6 | 1 | 150 | 429 | 623 | 1.57e-26 | 104 |
| Msa0896290 | AT5G57940.2 | 37.755 | 196 | 75 | 6 | 1 | 150 | 429 | 623 | 1.57e-26 | 104 |
| Msa0896290 | AT1G19780.2 | 36.735 | 196 | 77 | 5 | 1 | 150 | 228 | 422 | 1.63e-26 | 104 |
| Msa0896290 | AT5G57940.3 | 37.755 | 196 | 75 | 6 | 1 | 150 | 422 | 616 | 1.67e-26 | 104 |
| Msa0896290 | AT1G19780.1 | 36.735 | 196 | 77 | 5 | 1 | 150 | 439 | 633 | 2.33e-26 | 103 |
| Msa0896290 | AT1G15990.1 | 36.735 | 196 | 77 | 5 | 1 | 150 | 433 | 627 | 3.29e-26 | 103 |
| Msa0896290 | AT2G23980.6 | 37.245 | 196 | 76 | 5 | 1 | 150 | 418 | 612 | 6.51e-26 | 102 |
| Msa0896290 | AT2G23980.3 | 37.245 | 196 | 76 | 5 | 1 | 150 | 468 | 662 | 6.91e-26 | 102 |
| Msa0896290 | AT2G23980.2 | 37.245 | 196 | 76 | 5 | 1 | 150 | 468 | 662 | 6.91e-26 | 102 |
| Msa0896290 | AT2G23980.8 | 37.245 | 196 | 76 | 5 | 1 | 150 | 468 | 662 | 6.91e-26 | 102 |
| Msa0896290 | AT2G23980.7 | 37.245 | 196 | 76 | 5 | 1 | 150 | 468 | 662 | 6.91e-26 | 102 |
| Msa0896290 | AT2G23980.9 | 37.245 | 196 | 76 | 5 | 1 | 150 | 445 | 639 | 7.15e-26 | 102 |
| Msa0896290 | AT2G23980.10 | 37.245 | 196 | 76 | 5 | 1 | 150 | 445 | 639 | 7.15e-26 | 102 |
| Msa0896290 | AT2G23980.1 | 37.245 | 196 | 76 | 5 | 1 | 150 | 445 | 639 | 7.15e-26 | 102 |
| Msa0896290 | AT2G23980.4 | 37.245 | 196 | 76 | 5 | 1 | 150 | 445 | 639 | 7.15e-26 | 102 |
| Msa0896290 | AT2G23980.5 | 37.245 | 196 | 76 | 5 | 1 | 150 | 445 | 639 | 7.15e-26 | 102 |
| Msa0896290 | AT4G30560.1 | 36.735 | 196 | 77 | 5 | 1 | 150 | 444 | 638 | 3.01e-25 | 100 |
| Msa0896290 | AT4G30560.4 | 36.735 | 196 | 77 | 5 | 1 | 150 | 444 | 638 | 3.01e-25 | 100 |
| Msa0896290 | AT4G30560.5 | 36.735 | 196 | 77 | 5 | 1 | 150 | 418 | 612 | 3.14e-25 | 100 |
| Msa0896290 | AT4G30560.2 | 36.735 | 196 | 77 | 5 | 1 | 150 | 418 | 612 | 3.14e-25 | 100 |
| Msa0896290 | AT4G30560.3 | 36.735 | 196 | 77 | 5 | 1 | 150 | 418 | 612 | 3.14e-25 | 100 |
| Msa0896290 | AT1G01340.2 | 36.548 | 197 | 76 | 7 | 1 | 150 | 404 | 598 | 3.74e-25 | 100 |
| Msa0896290 | AT1G01340.1 | 36.548 | 197 | 76 | 7 | 1 | 150 | 399 | 593 | 3.81e-25 | 100 |
| Msa0896290 | AT5G53130.1 | 34.392 | 189 | 78 | 5 | 1 | 143 | 417 | 605 | 7.60e-25 | 99.8 |
| Msa0896290 | AT4G01010.1 | 35.533 | 197 | 78 | 7 | 1 | 150 | 405 | 599 | 3.45e-24 | 97.8 |
| Msa0896290 | AT4G01010.2 | 35.533 | 197 | 78 | 7 | 1 | 150 | 405 | 599 | 3.45e-24 | 97.8 |
| Msa0896290 | AT2G46430.1 | 35.294 | 187 | 75 | 5 | 1 | 142 | 408 | 593 | 6.13e-23 | 94.4 |
| Msa0896290 | AT2G46430.2 | 35.294 | 187 | 75 | 5 | 1 | 142 | 408 | 593 | 6.13e-23 | 94.4 |
| Msa0896290 | AT2G24610.1 | 34.694 | 196 | 79 | 5 | 2 | 150 | 413 | 606 | 1.67e-22 | 93.2 |
| Msa0896290 | AT2G24610.2 | 34.694 | 196 | 79 | 5 | 2 | 150 | 428 | 621 | 1.89e-22 | 92.8 |
| Msa0896290 | AT5G14870.1 | 31.795 | 195 | 86 | 6 | 2 | 150 | 381 | 574 | 8.92e-22 | 90.9 |
| Msa0896290 | AT3G48010.1 | 33.163 | 196 | 82 | 5 | 2 | 150 | 389 | 582 | 1.46e-21 | 90.5 |
| Msa0896290 | AT2G28260.2 | 32.620 | 187 | 80 | 5 | 2 | 142 | 363 | 549 | 6.35e-20 | 85.5 |
| Msa0896290 | AT2G28260.1 | 32.620 | 187 | 80 | 5 | 2 | 142 | 403 | 589 | 7.07e-20 | 85.5 |
| Msa0896290 | AT2G46450.2 | 29.412 | 187 | 88 | 4 | 1 | 145 | 343 | 527 | 3.66e-16 | 74.7 |
| Msa0896290 | AT2G46450.3 | 29.412 | 187 | 88 | 4 | 1 | 145 | 330 | 514 | 3.86e-16 | 74.7 |
| Msa0896290 | AT2G46450.4 | 29.412 | 187 | 88 | 4 | 1 | 145 | 366 | 550 | 4.09e-16 | 74.7 |
| Msa0896290 | AT2G46450.1 | 29.412 | 187 | 88 | 4 | 1 | 145 | 366 | 550 | 4.09e-16 | 74.7 |
| Msa0896290 | AT2G46440.2 | 31.959 | 194 | 87 | 5 | 1 | 150 | 188 | 380 | 5.37e-16 | 74.3 |
| Msa0896290 | AT2G46440.1 | 31.959 | 194 | 87 | 5 | 1 | 150 | 366 | 558 | 7.11e-16 | 73.9 |
| Msa0896290 | AT5G54250.3 | 30.270 | 185 | 78 | 4 | 1 | 140 | 427 | 605 | 3.36e-14 | 69.3 |
| Msa0896290 | AT5G15410.2 | 29.891 | 184 | 85 | 4 | 1 | 140 | 461 | 644 | 3.45e-14 | 69.3 |
| Msa0896290 | AT5G15410.1 | 29.891 | 184 | 85 | 4 | 1 | 140 | 462 | 645 | 3.45e-14 | 69.3 |
| Msa0896290 | AT5G54250.2 | 30.000 | 190 | 77 | 5 | 1 | 140 | 427 | 610 | 5.77e-14 | 68.6 |
| Msa0896290 | AT5G54250.1 | 30.000 | 190 | 77 | 5 | 1 | 140 | 427 | 610 | 5.77e-14 | 68.6 |
| Msa0896290 | AT5G54250.4 | 30.000 | 190 | 77 | 5 | 1 | 140 | 427 | 610 | 5.77e-14 | 68.6 |
Find 60 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGAAGTCCTTGGAAAT+TGG | 0.252465 | 6_1:+86099431 | Msa0896290:three_prime_UTR |
| TAGAATAGTGGTATGCTTAT+AGG | 0.263460 | 6_1:+86099456 | Msa0896290:three_prime_UTR |
| CACTTGCAGCAAACAGAATT+CGG | 0.265972 | 6_1:+86099305 | Msa0896290:three_prime_UTR |
| AAGGGGTGTTCCGGAGAAAA+TGG | 0.286749 | 6_1:+86097286 | Msa0896290:CDS |
| TTAGGTATGAATCGCCTTAC+TGG | 0.318970 | 6_1:+86099278 | Msa0896290:intron |
| ATGTCTGTCTGGAGATCTTC+TGG | 0.319596 | 6_1:-86097323 | None:intergenic |
| TCTGACGCGTTTCATCTTTA+CGG | 0.319612 | 6_1:+86096992 | Msa0896290:five_prime_UTR |
| GGCTGCAACAAGGGGTGTTC+CGG | 0.327420 | 6_1:+86097277 | Msa0896290:CDS |
| GCTTACCAGAAGATCTTAAA+AGG | 0.333332 | 6_1:+86097112 | Msa0896290:CDS |
| AGAATAGTGGTATGCTTATA+GGG | 0.352341 | 6_1:+86099457 | Msa0896290:three_prime_UTR |
| CGTGGATATATTTATCATGA+TGG | 0.404045 | 6_1:-86099562 | None:intergenic |
| TTGCGGAGCCCTCGTGTTCA+AGG | 0.418034 | 6_1:+86098333 | Msa0896290:CDS |
| ATTCACTACATTGAAGTCCT+TGG | 0.422957 | 6_1:+86099424 | Msa0896290:three_prime_UTR |
| CTTGTTGCAGCCCAACTATA+CGG | 0.427299 | 6_1:-86097266 | None:intergenic |
| TTAGAGAGCGTCGGAGAAGA+TGG | 0.436905 | 6_1:+86098025 | Msa0896290:CDS |
| TGTTCCGGAGAAAATGGTTT+CGG | 0.457375 | 6_1:+86097292 | Msa0896290:CDS |
| TCCCCTTCTGATAACGGAAC+CGG | 0.459445 | 6_1:-86098052 | None:intergenic |
| ATTCGGGTTGCATGGAGATA+CGG | 0.476279 | 6_1:+86099322 | Msa0896290:three_prime_UTR |
| CGTCGGAGAAGATGGAATTC+CGG | 0.481295 | 6_1:+86098033 | Msa0896290:CDS |
| TCCTTGAATCAAAATGTTCG+TGG | 0.481610 | 6_1:-86099580 | None:intergenic |
| AAAATAAAGCTTCACGGCCA+GGG | 0.481814 | 6_1:+86098210 | Msa0896290:CDS |
| GTCAGGCTGAACCGTATAGT+TGG | 0.486690 | 6_1:+86097255 | Msa0896290:CDS |
| TTCGGGTTGCATGGAGATAC+GGG | 0.488027 | 6_1:+86099323 | Msa0896290:three_prime_UTR |
| ATTTCTACCCTCTTGTAAGC+AGG | 0.489020 | 6_1:-86097045 | None:intergenic |
| CGTGTTCAAGGAGTTATATA+AGG | 0.489064 | 6_1:+86098345 | Msa0896290:CDS |
| CGTATAGTTGGGCTGCAACA+AGG | 0.490037 | 6_1:+86097267 | Msa0896290:CDS |
| GTATAGTTGGGCTGCAACAA+GGG | 0.493591 | 6_1:+86097268 | Msa0896290:CDS |
| TATTAACAAATTTGAAGAGA+TGG | 0.501093 | 6_1:-86097352 | None:intergenic |
| GTCATGCAGGAGAGTACGTC+AGG | 0.504709 | 6_1:+86097238 | Msa0896290:intron |
| CAAGCATCCCCTTCTGATAA+CGG | 0.505912 | 6_1:-86098058 | None:intergenic |
| TGGAAATTGGAATAGAATAG+TGG | 0.507358 | 6_1:+86099444 | Msa0896290:three_prime_UTR |
| GATGGCGTCTTATGTCTGTC+TGG | 0.521052 | 6_1:-86097334 | None:intergenic |
| ACTTGCAGCAAACAGAATTC+GGG | 0.521184 | 6_1:+86099306 | Msa0896290:three_prime_UTR |
| TCAGGCTGAACCGTATAGTT+GGG | 0.522851 | 6_1:+86097256 | Msa0896290:CDS |
| AAACATTAGAGTAGAGCCTA+TGG | 0.530351 | 6_1:-86099400 | None:intergenic |
| CAAACAGAATTCGGGTTGCA+TGG | 0.530459 | 6_1:+86099314 | Msa0896290:three_prime_UTR |
| CTATTCTATTCCAATTTCCA+AGG | 0.535411 | 6_1:-86099441 | None:intergenic |
| TAGAGAGTTATAAAGTAGCT+AGG | 0.540046 | 6_1:+86099503 | Msa0896290:three_prime_UTR |
| GGGTGGTCTTGTACAGAAGA+TGG | 0.547676 | 6_1:+86097982 | Msa0896290:intron |
| TCCGGTTCCGTTATCAGAAG+GGG | 0.560727 | 6_1:+86098051 | Msa0896290:CDS |
| ATTCCGGTTCCGTTATCAGA+AGG | 0.567052 | 6_1:+86098049 | Msa0896290:CDS |
| GCTGCAAGTGATCTCCAGTA+AGG | 0.578266 | 6_1:-86099292 | None:intergenic |
| TATTCGATCCTGCTTACAAG+AGG | 0.583532 | 6_1:+86097037 | Msa0896290:five_prime_UTR |
| TTATCAAACATTGATACCAT+AGG | 0.594548 | 6_1:+86099384 | Msa0896290:three_prime_UTR |
| GATCTTCTGGTAAGCGACGA+TGG | 0.594933 | 6_1:-86097104 | None:intergenic |
| TTCCGGTTCCGTTATCAGAA+GGG | 0.604864 | 6_1:+86098050 | Msa0896290:CDS |
| AGGGTAGAAATGCAACTTAG+AGG | 0.611605 | 6_1:+86097057 | Msa0896290:exon |
| CGCGGAAGATTAGAGAGCGT+CGG | 0.613176 | 6_1:+86098016 | Msa0896290:CDS |
| TATAGTTGGGCTGCAACAAG+GGG | 0.617263 | 6_1:+86097269 | Msa0896290:CDS |
| TTCTGTCACTAGTCAAACCC+TGG | 0.623531 | 6_1:-86098227 | None:intergenic |
| TTATCAGAAGGGGATGCTTG+TGG | 0.631551 | 6_1:+86098061 | Msa0896290:CDS |
| ATTCGATCCTGCTTACAAGA+GGG | 0.635172 | 6_1:+86097038 | Msa0896290:five_prime_UTR |
| CTTCTTCAATGTCTTTAGCG+CGG | 0.635302 | 6_1:-86098287 | None:intergenic |
| AAGATGGTGTTTATTGTGCG+CGG | 0.642824 | 6_1:+86097998 | Msa0896290:CDS |
| AGTAAGATGCTTAACCAATG+TGG | 0.646548 | 6_1:+86098251 | Msa0896290:CDS |
| GAGTGAAAATGCCTCCACAT+TGG | 0.655949 | 6_1:-86098265 | None:intergenic |
| AAGATGCTTAACCAATGTGG+AGG | 0.669911 | 6_1:+86098254 | Msa0896290:CDS |
| TATATAACTCCTTGAACACG+AGG | 0.674214 | 6_1:-86098342 | None:intergenic |
| GAGGTCGTGATGTTGAGCAA+TGG | 0.676062 | 6_1:+86097076 | Msa0896290:CDS |
| ATATAACTCCTTGAACACGA+GGG | 0.734734 | 6_1:-86098341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAAGTTGTAT+TGG | - | chr6_1:86098851-86098870 | None:intergenic | 10.0% |
| !!! | ACCTATAATGTTTTAAATAA+GGG | + | chr6_1:86097463-86097482 | Msa0896290:intron | 15.0% |
| !! | AAAAAAATTCTTACCATAAA+AGG | - | chr6_1:86097604-86097623 | None:intergenic | 15.0% |
| !!! | GAAAACGAATTTTATTTAAA+GGG | - | chr6_1:86097670-86097689 | None:intergenic | 15.0% |
| !!! | TTTTTATTTATAAATGTGAC+CGG | + | chr6_1:86099198-86099217 | Msa0896290:intron | 15.0% |
| !! | AAAATGCATCTATTGAATAA+TGG | + | chr6_1:86097179-86097198 | Msa0896290:intron | 20.0% |
| !! | TATTAACAAATTTGAAGAGA+TGG | - | chr6_1:86097355-86097374 | None:intergenic | 20.0% |
| !!! | TTAAGTCGATTTTATTTATC+TGG | + | chr6_1:86097411-86097430 | Msa0896290:intron | 20.0% |
| !!! | CACCTATAATGTTTTAAATA+AGG | + | chr6_1:86097462-86097481 | Msa0896290:intron | 20.0% |
| !!! | TCCCTTATTTAAAACATTAT+AGG | - | chr6_1:86097467-86097486 | None:intergenic | 20.0% |
| !!! | GGAAAACGAATTTTATTTAA+AGG | - | chr6_1:86097671-86097690 | None:intergenic | 20.0% |
| !! | TATGACAATATGTATTTAAG+TGG | - | chr6_1:86098692-86098711 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTCATATAAAACA+AGG | + | chr6_1:86098939-86098958 | Msa0896290:intron | 20.0% |
| !!! | GTCTTTTTCATATAAAACAA+GGG | + | chr6_1:86098940-86098959 | Msa0896290:intron | 20.0% |
| !!! | TAAGCAAAAAAGTACTTTTT+AGG | + | chr6_1:86099100-86099119 | Msa0896290:intron | 20.0% |
| ! | TACATATAATGCACAAATGA+TGG | + | chr6_1:86097204-86097223 | Msa0896290:intron | 25.0% |
| !!! | AAACTCTGTTGACTTATTTA+TGG | - | chr6_1:86097581-86097600 | None:intergenic | 25.0% |
| ! | TAAGATGGTACAACTATATT+TGG | + | chr6_1:86098095-86098114 | Msa0896290:intron | 25.0% |
| ! | GGTAAAAAAATAAAGCTTCA+CGG | + | chr6_1:86098204-86098223 | Msa0896290:CDS | 25.0% |
| ! | TTTATGATTCAACTGCATTT+CGG | + | chr6_1:86098434-86098453 | Msa0896290:intron | 25.0% |
| ! | ACAATATGTATTTAAGTGGT+AGG | - | chr6_1:86098688-86098707 | None:intergenic | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | - | chr6_1:86098886-86098905 | None:intergenic | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | - | chr6_1:86098887-86098906 | None:intergenic | 25.0% |
| ! | AAATTGTGTGAGAAAAAAGT+TGG | - | chr6_1:86098901-86098920 | None:intergenic | 25.0% |
| ! | TTCCTTAATTTATGTGCAAT+TGG | + | chr6_1:86099005-86099024 | Msa0896290:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | chr6_1:86099090-86099109 | None:intergenic | 25.0% |
| ! | CATTCAATATCTAATGTATG+TGG | - | chr6_1:86099163-86099182 | None:intergenic | 25.0% |
| !!! | TGTTTGATAATCATTTTGTG+TGG | - | chr6_1:86099374-86099393 | None:intergenic | 25.0% |
| ! | TTATCAAACATTGATACCAT+AGG | + | chr6_1:86099384-86099403 | Msa0896290:three_prime_UTR | 25.0% |
| !!! | TCATACCTTTTAAGATCTTC+TGG | - | chr6_1:86097120-86097139 | None:intergenic | 30.0% |
| ATTAGATTCCAACAAGTTAC+AGG | - | chr6_1:86097705-86097724 | None:intergenic | 30.0% | |
| TCAGGCATGTCTAATTTAAT+TGG | - | chr6_1:86097809-86097828 | None:intergenic | 30.0% | |
| ! | TGCCTGAATGCTATTTATAA+TGG | + | chr6_1:86097822-86097841 | Msa0896290:intron | 30.0% |
| CACCATTATAAATAGCATTC+AGG | - | chr6_1:86097827-86097846 | None:intergenic | 30.0% | |
| CTATGATCTAACATTTGTAC+AGG | + | chr6_1:86097857-86097876 | Msa0896290:intron | 30.0% | |
| ATACAGACGACATACATTAA+AGG | + | chr6_1:86097941-86097960 | Msa0896290:intron | 30.0% | |
| CTGAGAATGTGTTTATAAGA+CGG | - | chr6_1:86098498-86098517 | None:intergenic | 30.0% | |
| AATGGGAAAAATCTAAGTCA+AGG | - | chr6_1:86098522-86098541 | None:intergenic | 30.0% | |
| !! | ATTCTAAGATGGTATTAGAG+AGG | - | chr6_1:86098605-86098624 | None:intergenic | 30.0% |
| ACCATCTTAGAATTTGTGTT+AGG | + | chr6_1:86098612-86098631 | Msa0896290:intron | 30.0% | |
| TAACTCAACCCATAAAAAAC+CGG | + | chr6_1:86098637-86098656 | Msa0896290:intron | 30.0% | |
| !!! | CTATCAAACCGGTTTTTTAT+GGG | - | chr6_1:86098648-86098667 | None:intergenic | 30.0% |
| ! | TGTCATATCTTTTCTCAATG+TGG | + | chr6_1:86098705-86098724 | Msa0896290:intron | 30.0% |
| ! | GTCATATCTTTTCTCAATGT+GGG | + | chr6_1:86098706-86098725 | Msa0896290:intron | 30.0% |
| GTATTTATTGAGGGTAAAGT+TGG | - | chr6_1:86098877-86098896 | None:intergenic | 30.0% | |
| AGCCAATTGCACATAAATTA+AGG | - | chr6_1:86099010-86099029 | None:intergenic | 30.0% | |
| TTATTTATAAATGTGACCGG+AGG | + | chr6_1:86099201-86099220 | Msa0896290:intron | 30.0% | |
| TATTTATAAATGTGACCGGA+GGG | + | chr6_1:86099202-86099221 | Msa0896290:intron | 30.0% | |
| CTATTCTATTCCAATTTCCA+AGG | - | chr6_1:86099444-86099463 | None:intergenic | 30.0% | |
| TGGAAATTGGAATAGAATAG+TGG | + | chr6_1:86099444-86099463 | Msa0896290:three_prime_UTR | 30.0% | |
| TAGAATAGTGGTATGCTTAT+AGG | + | chr6_1:86099456-86099475 | Msa0896290:three_prime_UTR | 30.0% | |
| AGAATAGTGGTATGCTTATA+GGG | + | chr6_1:86099457-86099476 | Msa0896290:three_prime_UTR | 30.0% | |
| TAGAGAGTTATAAAGTAGCT+AGG | + | chr6_1:86099503-86099522 | Msa0896290:three_prime_UTR | 30.0% | |
| CGTGGATATATTTATCATGA+TGG | - | chr6_1:86099565-86099584 | None:intergenic | 30.0% | |
| GCTTACCAGAAGATCTTAAA+AGG | + | chr6_1:86097112-86097131 | Msa0896290:CDS | 35.0% | |
| TTTGCGAATGTTGATGTCAT+TGG | - | chr6_1:86097162-86097181 | None:intergenic | 35.0% | |
| ! | TTTTCCGAAACCATTTTCTC+CGG | - | chr6_1:86097299-86097318 | None:intergenic | 35.0% |
| TATCTGGTACAGATGTTATG+TGG | + | chr6_1:86097427-86097446 | Msa0896290:intron | 35.0% | |
| ! | GTCAACAGAGTTTCCTTTTA+TGG | + | chr6_1:86097588-86097607 | Msa0896290:intron | 35.0% |
| ATTTAAAGGGTCATGCTAAC+CGG | - | chr6_1:86097657-86097676 | None:intergenic | 35.0% | |
| AGGAAGTAAAATTCTCAGTC+AGG | + | chr6_1:86097961-86097980 | Msa0896290:intron | 35.0% | |
| GGAAGTAAAATTCTCAGTCA+GGG | + | chr6_1:86097962-86097981 | Msa0896290:intron | 35.0% | |
| ! | CATCGATTAATCATGGTTTG+AGG | - | chr6_1:86098167-86098186 | None:intergenic | 35.0% |
| CAAACCATGATTAATCGATG+TGG | + | chr6_1:86098167-86098186 | Msa0896290:intron | 35.0% | |
| ! | GAAACCACATCGATTAATCA+TGG | - | chr6_1:86098174-86098193 | None:intergenic | 35.0% |
| AGTAAGATGCTTAACCAATG+TGG | + | chr6_1:86098251-86098270 | Msa0896290:CDS | 35.0% | |
| ! | CTCTTTTCGCAAGATTTTTG+CGG | + | chr6_1:86098316-86098335 | Msa0896290:CDS | 35.0% |
| ATATAACTCCTTGAACACGA+GGG | - | chr6_1:86098344-86098363 | None:intergenic | 35.0% | |
| TATATAACTCCTTGAACACG+AGG | - | chr6_1:86098345-86098364 | None:intergenic | 35.0% | |
| CGTGTTCAAGGAGTTATATA+AGG | + | chr6_1:86098345-86098364 | Msa0896290:CDS | 35.0% | |
| ! | GTTTATAAGACGGCTTTGTA+GGG | - | chr6_1:86098488-86098507 | None:intergenic | 35.0% |
| ! | TGTTTATAAGACGGCTTTGT+AGG | - | chr6_1:86098489-86098508 | None:intergenic | 35.0% |
| GGTGCGTGAATATAAATGAT+GGG | + | chr6_1:86098563-86098582 | Msa0896290:intron | 35.0% | |
| ! | GCCTAACACAAATTCTAAGA+TGG | - | chr6_1:86098616-86098635 | None:intergenic | 35.0% |
| !!! | GGTTTTTTATGGGTTGAGTT+AGG | - | chr6_1:86098638-86098657 | None:intergenic | 35.0% |
| !!! | CCTATCAAACCGGTTTTTTA+TGG | - | chr6_1:86098649-86098668 | None:intergenic | 35.0% |
| !! | CCATAAAAAACCGGTTTGAT+AGG | + | chr6_1:86098646-86098665 | Msa0896290:intron | 35.0% |
| TTACTTCACACCTATCAAAC+CGG | - | chr6_1:86098659-86098678 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr6_1:86098785-86098804 | None:intergenic | 35.0% |
| AAATCATTGTGTCAGAGACA+TGG | - | chr6_1:86099241-86099260 | None:intergenic | 35.0% | |
| ATGTCTCTGACACAATGATT+TGG | + | chr6_1:86099240-86099259 | Msa0896290:intron | 35.0% | |
| !! | TGGTCGTTTTGTGTTATGTT+AGG | + | chr6_1:86099260-86099279 | Msa0896290:intron | 35.0% |
| AAACATTAGAGTAGAGCCTA+TGG | - | chr6_1:86099403-86099422 | None:intergenic | 35.0% | |
| ATTCACTACATTGAAGTCCT+TGG | + | chr6_1:86099424-86099443 | Msa0896290:three_prime_UTR | 35.0% | |
| ACATTGAAGTCCTTGGAAAT+TGG | + | chr6_1:86099431-86099450 | Msa0896290:three_prime_UTR | 35.0% | |
| !!! | TCCACGAACATTTTGATTCA+AGG | + | chr6_1:86099579-86099598 | Msa0896290:three_prime_UTR | 35.0% |
| TCCTTGAATCAAAATGTTCG+TGG | - | chr6_1:86099583-86099602 | None:intergenic | 35.0% | |
| TCTGACGCGTTTCATCTTTA+CGG | + | chr6_1:86096992-86097011 | Msa0896290:five_prime_UTR | 40.0% | |
| TATTCGATCCTGCTTACAAG+AGG | + | chr6_1:86097037-86097056 | Msa0896290:five_prime_UTR | 40.0% | |
| ATTCGATCCTGCTTACAAGA+GGG | + | chr6_1:86097038-86097057 | Msa0896290:five_prime_UTR | 40.0% | |
| ATTTCTACCCTCTTGTAAGC+AGG | - | chr6_1:86097048-86097067 | None:intergenic | 40.0% | |
| AGGGTAGAAATGCAACTTAG+AGG | + | chr6_1:86097057-86097076 | Msa0896290:exon | 40.0% | |
| TGTTCCGGAGAAAATGGTTT+CGG | + | chr6_1:86097292-86097311 | Msa0896290:CDS | 40.0% | |
| AAGTTACAGGCAGACACATA+GGG | - | chr6_1:86097692-86097711 | None:intergenic | 40.0% | |
| ! | GGTTCGAATTTTTGCCCTAA+TGG | + | chr6_1:86097878-86097897 | Msa0896290:intron | 40.0% |
| ! | AATTTTTGCCCTAATGGCTG+AGG | + | chr6_1:86097884-86097903 | Msa0896290:intron | 40.0% |
| AGTAAAATTCTCAGTCAGGG+TGG | + | chr6_1:86097965-86097984 | Msa0896290:intron | 40.0% | |
| AAGATGGTGTTTATTGTGCG+CGG | + | chr6_1:86097998-86098017 | Msa0896290:CDS | 40.0% | |
| ! | GTGGTGAAGAACTTCTAAGA+TGG | + | chr6_1:86098080-86098099 | Msa0896290:intron | 40.0% |
| ! | GACTGTGACAACTTCTTTTG+AGG | - | chr6_1:86098136-86098155 | None:intergenic | 40.0% |
| GATGTGGTTTCTCTTGAAGA+AGG | + | chr6_1:86098183-86098202 | Msa0896290:intron | 40.0% | |
| AAAAATAAAGCTTCACGGCC+AGG | + | chr6_1:86098209-86098228 | Msa0896290:CDS | 40.0% | |
| AAAATAAAGCTTCACGGCCA+GGG | + | chr6_1:86098210-86098229 | Msa0896290:CDS | 40.0% | |
| AAGATGCTTAACCAATGTGG+AGG | + | chr6_1:86098254-86098273 | Msa0896290:CDS | 40.0% | |
| CTTCTTCAATGTCTTTAGCG+CGG | - | chr6_1:86098290-86098309 | None:intergenic | 40.0% | |
| CACAAAGACAGCAGAGAAAT+GGG | - | chr6_1:86098391-86098410 | None:intergenic | 40.0% | |
| ACACAAAGACAGCAGAGAAA+TGG | - | chr6_1:86098392-86098411 | None:intergenic | 40.0% | |
| !! | TTTCGGTGTTGTGTTTGGAT+TGG | + | chr6_1:86098451-86098470 | Msa0896290:intron | 40.0% |
| ACAATAGATTCGGGGGTAAT+GGG | - | chr6_1:86098539-86098558 | None:intergenic | 40.0% | |
| TACAATAGATTCGGGGGTAA+TGG | - | chr6_1:86098540-86098559 | None:intergenic | 40.0% | |
| CGGTGCGTGAATATAAATGA+TGG | + | chr6_1:86098562-86098581 | Msa0896290:intron | 40.0% | |
| ! | GCGTGAATATAAATGATGGG+TGG | + | chr6_1:86098566-86098585 | Msa0896290:intron | 40.0% |
| CGGAGGAAGTAACACAATTT+AGG | - | chr6_1:86098765-86098784 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAGACGAA+GGG | + | chr6_1:86099035-86099054 | Msa0896290:intron | 40.0% |
| TGTCTAATAACTACTCCCTC+CGG | + | chr6_1:86099068-86099087 | Msa0896290:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr6_1:86099086-86099105 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr6_1:86099087-86099106 | None:intergenic | 40.0% | |
| !! | GGTTTTGATAATACTCCCTC+CGG | - | chr6_1:86099220-86099239 | None:intergenic | 40.0% |
| TTAGGTATGAATCGCCTTAC+TGG | + | chr6_1:86099278-86099297 | Msa0896290:intron | 40.0% | |
| CACTTGCAGCAAACAGAATT+CGG | + | chr6_1:86099305-86099324 | Msa0896290:three_prime_UTR | 40.0% | |
| ACTTGCAGCAAACAGAATTC+GGG | + | chr6_1:86099306-86099325 | Msa0896290:three_prime_UTR | 40.0% | |
| GGATACGAAATCTGTCATGC+AGG | + | chr6_1:86097225-86097244 | Msa0896290:intron | 45.0% | |
| TCAGGCTGAACCGTATAGTT+GGG | + | chr6_1:86097256-86097275 | Msa0896290:CDS | 45.0% | |
| CTTGTTGCAGCCCAACTATA+CGG | - | chr6_1:86097269-86097288 | None:intergenic | 45.0% | |
| GTATAGTTGGGCTGCAACAA+GGG | + | chr6_1:86097268-86097287 | Msa0896290:CDS | 45.0% | |
| TATAGTTGGGCTGCAACAAG+GGG | + | chr6_1:86097269-86097288 | Msa0896290:CDS | 45.0% | |
| ATGTCTGTCTGGAGATCTTC+TGG | - | chr6_1:86097326-86097345 | None:intergenic | 45.0% | |
| AGTATGCTTAACCAGTGCCT+CGG | - | chr6_1:86097508-86097527 | None:intergenic | 45.0% | |
| TGTATGCTTAAACAGTGCCC+TGG | + | chr6_1:86097626-86097645 | Msa0896290:intron | 45.0% | |
| GTATGCTTAAACAGTGCCCT+GGG | + | chr6_1:86097627-86097646 | Msa0896290:intron | 45.0% | |
| TATGCTTAAACAGTGCCCTG+GGG | + | chr6_1:86097628-86097647 | Msa0896290:intron | 45.0% | |
| CAAGTTACAGGCAGACACAT+AGG | - | chr6_1:86097693-86097712 | None:intergenic | 45.0% | |
| ! | TGTGTCTGCCTGTAACTTGT+TGG | + | chr6_1:86097694-86097713 | Msa0896290:intron | 45.0% |
| AGGTTCATCCTCAGCCATTA+GGG | - | chr6_1:86097895-86097914 | None:intergenic | 45.0% | |
| TAGGTTCATCCTCAGCCATT+AGG | - | chr6_1:86097896-86097915 | None:intergenic | 45.0% | |
| ! | CTCACGAATGCGTCTAAGAT+AGG | - | chr6_1:86097915-86097934 | None:intergenic | 45.0% |
| ATTCCGGTTCCGTTATCAGA+AGG | + | chr6_1:86098049-86098068 | Msa0896290:CDS | 45.0% | |
| TTCCGGTTCCGTTATCAGAA+GGG | + | chr6_1:86098050-86098069 | Msa0896290:CDS | 45.0% | |
| CAAGCATCCCCTTCTGATAA+CGG | - | chr6_1:86098061-86098080 | None:intergenic | 45.0% | |
| TTATCAGAAGGGGATGCTTG+TGG | + | chr6_1:86098061-86098080 | Msa0896290:CDS | 45.0% | |
| TTCTGTCACTAGTCAAACCC+TGG | - | chr6_1:86098230-86098249 | None:intergenic | 45.0% | |
| GAGTGAAAATGCCTCCACAT+TGG | - | chr6_1:86098268-86098287 | None:intergenic | 45.0% | |
| AAGACAGCAGAGAAATGGGA+TGG | - | chr6_1:86098387-86098406 | None:intergenic | 45.0% | |
| !! | CTGCATTTCGGTGTTGTGTT+TGG | + | chr6_1:86098446-86098465 | Msa0896290:intron | 45.0% |
| ! | TATAAGACGGCTTTGTAGGG+TGG | - | chr6_1:86098485-86098504 | None:intergenic | 45.0% |
| ACCCCCGAATCTATTGTACT+CGG | + | chr6_1:86098542-86098561 | Msa0896290:intron | 45.0% | |
| ACCGAGTACAATAGATTCGG+GGG | - | chr6_1:86098546-86098565 | None:intergenic | 45.0% | |
| CACCGAGTACAATAGATTCG+GGG | - | chr6_1:86098547-86098566 | None:intergenic | 45.0% | |
| GCACCGAGTACAATAGATTC+GGG | - | chr6_1:86098548-86098567 | None:intergenic | 45.0% | |
| CGCACCGAGTACAATAGATT+CGG | - | chr6_1:86098549-86098568 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr6_1:86098782-86098801 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAGACGA+AGG | + | chr6_1:86099034-86099053 | Msa0896290:intron | 45.0% |
| !! | CAAACAGAATTCGGGTTGCA+TGG | + | chr6_1:86099314-86099333 | Msa0896290:three_prime_UTR | 45.0% |
| !! | ATTCGGGTTGCATGGAGATA+CGG | + | chr6_1:86099322-86099341 | Msa0896290:three_prime_UTR | 45.0% |
| GAGGTCGTGATGTTGAGCAA+TGG | + | chr6_1:86097076-86097095 | Msa0896290:CDS | 50.0% | |
| GATCTTCTGGTAAGCGACGA+TGG | - | chr6_1:86097107-86097126 | None:intergenic | 50.0% | |
| GTCAGGCTGAACCGTATAGT+TGG | + | chr6_1:86097255-86097274 | Msa0896290:CDS | 50.0% | |
| CGTATAGTTGGGCTGCAACA+AGG | + | chr6_1:86097267-86097286 | Msa0896290:CDS | 50.0% | |
| !! | AAGGGGTGTTCCGGAGAAAA+TGG | + | chr6_1:86097286-86097305 | Msa0896290:CDS | 50.0% |
| GATGGCGTCTTATGTCTGTC+TGG | - | chr6_1:86097337-86097356 | None:intergenic | 50.0% | |
| GTATGCTTAACCAGTGCCTC+GGG | - | chr6_1:86097507-86097526 | None:intergenic | 50.0% | |
| !! | GGGTGGTCTTGTACAGAAGA+TGG | + | chr6_1:86097982-86098001 | Msa0896290:intron | 50.0% |
| !! | TTAGAGAGCGTCGGAGAAGA+TGG | + | chr6_1:86098025-86098044 | Msa0896290:CDS | 50.0% |
| CGTCGGAGAAGATGGAATTC+CGG | + | chr6_1:86098033-86098052 | Msa0896290:CDS | 50.0% | |
| TCCGGTTCCGTTATCAGAAG+GGG | + | chr6_1:86098051-86098070 | Msa0896290:CDS | 50.0% | |
| !! | TCCCCTTCTGATAACGGAAC+CGG | - | chr6_1:86098055-86098074 | None:intergenic | 50.0% |
| GCTGCAAGTGATCTCCAGTA+AGG | - | chr6_1:86099295-86099314 | None:intergenic | 50.0% | |
| !! | TTCGGGTTGCATGGAGATAC+GGG | + | chr6_1:86099323-86099342 | Msa0896290:three_prime_UTR | 50.0% |
| ! | GTCATGCAGGAGAGTACGTC+AGG | + | chr6_1:86097238-86097257 | Msa0896290:intron | 55.0% |
| ATGCTAACCAATGCCTCCCG+AGG | + | chr6_1:86097488-86097507 | Msa0896290:intron | 55.0% | |
| ! | CGCGGAAGATTAGAGAGCGT+CGG | + | chr6_1:86098016-86098035 | Msa0896290:CDS | 55.0% |
| !! | GGCTGCAACAAGGGGTGTTC+CGG | + | chr6_1:86097277-86097296 | Msa0896290:CDS | 60.0% |
| TGCTTAACCAGTGCCTCGGG+AGG | - | chr6_1:86097504-86097523 | None:intergenic | 60.0% | |
| AAACAGTGCCCTGGGGACAC+CGG | + | chr6_1:86097635-86097654 | Msa0896290:intron | 60.0% | |
| CATGCTAACCGGTGTCCCCA+GGG | - | chr6_1:86097646-86097665 | None:intergenic | 60.0% | |
| TCATGCTAACCGGTGTCCCC+AGG | - | chr6_1:86097647-86097666 | None:intergenic | 60.0% | |
| TTGCGGAGCCCTCGTGTTCA+AGG | + | chr6_1:86098333-86098352 | Msa0896290:CDS | 60.0% | |
| ACCAATGCCTCCCGAGGCAC+TGG | + | chr6_1:86097494-86097513 | Msa0896290:intron | 65.0% | |
| ! | ACCAGTGCCTCGGGAGGCAT+TGG | - | chr6_1:86097498-86097517 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 86096939 | 86099616 | 86096939 | ID=Msa0896290;Name=Msa0896290 |
| chr6_1 | mRNA | 86096939 | 86099616 | 86096939 | ID=Msa0896290-mRNA-1;Parent=Msa0896290;Name=Msa0896290-mRNA-1;_AED=0.40;_eAED=0.40;_QI=127|0.5|0.8|1|0.5|0.4|5|336|153 |
| chr6_1 | exon | 86096939 | 86097133 | 86096939 | ID=Msa0896290-mRNA-1:exon:14556;Parent=Msa0896290-mRNA-1 |
| chr6_1 | exon | 86097247 | 86097376 | 86097247 | ID=Msa0896290-mRNA-1:exon:14557;Parent=Msa0896290-mRNA-1 |
| chr6_1 | exon | 86097983 | 86098082 | 86097983 | ID=Msa0896290-mRNA-1:exon:14558;Parent=Msa0896290-mRNA-1 |
| chr6_1 | exon | 86098202 | 86098366 | 86098202 | ID=Msa0896290-mRNA-1:exon:14559;Parent=Msa0896290-mRNA-1 |
| chr6_1 | exon | 86099282 | 86099616 | 86099282 | ID=Msa0896290-mRNA-1:exon:14560;Parent=Msa0896290-mRNA-1 |
| chr6_1 | five_prime_UTR | 86096939 | 86097065 | 86096939 | ID=Msa0896290-mRNA-1:five_prime_utr;Parent=Msa0896290-mRNA-1 |
| chr6_1 | CDS | 86097066 | 86097133 | 86097066 | ID=Msa0896290-mRNA-1:cds;Parent=Msa0896290-mRNA-1 |
| chr6_1 | CDS | 86097247 | 86097376 | 86097247 | ID=Msa0896290-mRNA-1:cds;Parent=Msa0896290-mRNA-1 |
| chr6_1 | CDS | 86097983 | 86098082 | 86097983 | ID=Msa0896290-mRNA-1:cds;Parent=Msa0896290-mRNA-1 |
| chr6_1 | CDS | 86098202 | 86098365 | 86098202 | ID=Msa0896290-mRNA-1:cds;Parent=Msa0896290-mRNA-1 |
| chr6_1 | three_prime_UTR | 86098366 | 86098366 | 86098366 | ID=Msa0896290-mRNA-1:three_prime_utr;Parent=Msa0896290-mRNA-1 |
| chr6_1 | three_prime_UTR | 86099282 | 86099616 | 86099282 | ID=Msa0896290-mRNA-1:three_prime_utr;Parent=Msa0896290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
