Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201470 | XP_003629262.1 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 873 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201470 | sp|Q8L7E9|MCAC1_ARATH | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1201470 | 0.837400 | 5.317136e-57 | -8.615850e-47 |
| Msa0028640 | Msa1201470 | 0.808304 | 3.308300e-50 | -8.615850e-47 |
| Msa0053780 | Msa1201470 | 0.811811 | 5.807947e-51 | -8.615850e-47 |
| Msa0094850 | Msa1201470 | 0.812464 | 4.185388e-51 | -8.615850e-47 |
| Msa0110970 | Msa1201470 | 0.854626 | 1.086064e-61 | -8.615850e-47 |
| Msa0118570 | Msa1201470 | 0.803054 | 4.185302e-49 | -8.615850e-47 |
| Msa0631120 | Msa1201470 | 0.800675 | 1.289775e-48 | -8.615850e-47 |
| Msa0647130 | Msa1201470 | 0.804558 | 2.038970e-49 | -8.615850e-47 |
| Msa0650070 | Msa1201470 | 0.815024 | 1.142485e-51 | -8.615850e-47 |
| Msa0669340 | Msa1201470 | 0.800082 | 1.703192e-48 | -8.615850e-47 |
| Msa0684500 | Msa1201470 | 0.822541 | 2.242153e-53 | -8.615850e-47 |
| Msa0716560 | Msa1201470 | 0.802023 | 6.828491e-49 | -8.615850e-47 |
| Msa0741900 | Msa1201470 | 0.819937 | 8.935693e-53 | -8.615850e-47 |
| Msa0744160 | Msa1201470 | 0.811949 | 5.420951e-51 | -8.615850e-47 |
| Msa0754520 | Msa1201470 | 0.811289 | 7.542440e-51 | -8.615850e-47 |
| Msa0757950 | Msa1201470 | 0.817753 | 2.799847e-52 | -8.615850e-47 |
| Msa0810480 | Msa1201470 | 0.839340 | 1.680250e-57 | -8.615850e-47 |
| Msa0833220 | Msa1201470 | 0.810249 | 1.266313e-50 | -8.615850e-47 |
| Msa0124340 | Msa1201470 | 0.817441 | 3.291773e-52 | -8.615850e-47 |
| Msa0157290 | Msa1201470 | 0.837029 | 6.614940e-57 | -8.615850e-47 |
| Msa0193730 | Msa1201470 | 0.812637 | 3.835950e-51 | -8.615850e-47 |
| Msa0200260 | Msa1201470 | 0.801358 | 9.352359e-49 | -8.615850e-47 |
| Msa0410500 | Msa1201470 | 0.803349 | 3.637713e-49 | -8.615850e-47 |
| Msa0410650 | Msa1201470 | 0.828316 | 9.619325e-55 | -8.615850e-47 |
| Msa0417880 | Msa1201470 | 0.820904 | 5.361266e-53 | -8.615850e-47 |
| Msa0422850 | Msa1201470 | 0.804096 | 2.545303e-49 | -8.615850e-47 |
| Msa0422930 | Msa1201470 | 0.800354 | 1.499260e-48 | -8.615850e-47 |
| Msa0450440 | Msa1201470 | 0.801838 | 7.452683e-49 | -8.615850e-47 |
| Msa0461730 | Msa1201470 | 0.814261 | 1.686100e-51 | -8.615850e-47 |
| Msa0468290 | Msa1201470 | 0.800243 | 1.578934e-48 | -8.615850e-47 |
| Msa0475790 | Msa1201470 | 0.811792 | 5.863117e-51 | -8.615850e-47 |
| Msa1063950 | Msa1201470 | 0.822846 | 1.903583e-53 | -8.615850e-47 |
| Msa1065370 | Msa1201470 | 0.803018 | 4.258718e-49 | -8.615850e-47 |
| Msa1085200 | Msa1201470 | 0.825573 | 4.354932e-54 | -8.615850e-47 |
| Msa0243100 | Msa1201470 | 0.810546 | 1.092524e-50 | -8.615850e-47 |
| Msa0261340 | Msa1201470 | 0.811412 | 7.091702e-51 | -8.615850e-47 |
| Msa0287650 | Msa1201470 | 0.806123 | 9.581928e-50 | -8.615850e-47 |
| Msa0292400 | Msa1201470 | 0.814478 | 1.509685e-51 | -8.615850e-47 |
| Msa0317280 | Msa1201470 | 0.808676 | 2.754830e-50 | -8.615850e-47 |
| Msa0337540 | Msa1201470 | 0.823741 | 1.176358e-53 | -8.615850e-47 |
| Msa0349080 | Msa1201470 | 0.802256 | 6.116007e-49 | -8.615850e-47 |
| Msa1108160 | Msa1201470 | 0.821282 | 4.385643e-53 | -8.615850e-47 |
| Msa1111110 | Msa1201470 | 0.810070 | 1.383559e-50 | -8.615850e-47 |
| Msa1125000 | Msa1201470 | 0.823804 | 1.137111e-53 | -8.615850e-47 |
| Msa1151910 | Msa1201470 | 0.829655 | 4.559588e-55 | -8.615850e-47 |
| Msa1154690 | Msa1201470 | 0.816117 | 6.524093e-52 | -8.615850e-47 |
| Msa1172450 | Msa1201470 | 0.827053 | 1.934597e-54 | -8.615850e-47 |
| Msa1201470 | Msa1228210 | 0.802278 | 6.053270e-49 | -8.615850e-47 |
| Msa1201470 | Msa1242230 | 0.821206 | 4.565874e-53 | -8.615850e-47 |
| Msa1201470 | Msa1242240 | 0.827393 | 1.603851e-54 | -8.615850e-47 |
| Msa1201470 | Msa1260040 | 0.807834 | 4.163780e-50 | -8.615850e-47 |
| Msa1201470 | Msa1266960 | 0.801523 | 8.648511e-49 | -8.615850e-47 |
| Msa1201470 | Msa1269080 | 0.831621 | 1.504298e-55 | -8.615850e-47 |
| Msa1201470 | Msa1271290 | 0.806974 | 6.337870e-50 | -8.615850e-47 |
| Msa1201470 | Msa1278840 | 0.821269 | 4.416987e-53 | -8.615850e-47 |
| Msa1201470 | Msa1308380 | 0.806124 | 9.580810e-50 | -8.615850e-47 |
| Msa1201470 | Msa1322860 | 0.815041 | 1.132733e-51 | -8.615850e-47 |
| Msa1201470 | Msa1329920 | 0.809261 | 2.065451e-50 | -8.615850e-47 |
| Msa1201470 | Msa1365060 | 0.805159 | 1.527387e-49 | -8.615850e-47 |
| Msa1201470 | Msa1367370 | 0.804698 | 1.906295e-49 | -8.615850e-47 |
| Msa1201470 | Msa1374550 | 0.800190 | 1.619043e-48 | -8.615850e-47 |
| Msa1201470 | Msa1430240 | 0.800851 | 1.187295e-48 | -8.615850e-47 |
| Msa1201470 | Msa1443110 | 0.804506 | 2.090704e-49 | -8.615850e-47 |
| Msa0495320 | Msa1201470 | 0.807618 | 4.629164e-50 | -8.615850e-47 |
| Msa0503560 | Msa1201470 | 0.819215 | 1.305505e-52 | -8.615850e-47 |
| Msa0507680 | Msa1201470 | 0.825392 | 4.807647e-54 | -8.615850e-47 |
| Msa0534590 | Msa1201470 | 0.801585 | 8.400621e-49 | -8.615850e-47 |
| Msa0571140 | Msa1201470 | 0.800558 | 1.362185e-48 | -8.615850e-47 |
| Msa0574890 | Msa1201470 | 0.817013 | 4.109248e-52 | -8.615850e-47 |
| Msa0601750 | Msa1201470 | 0.814421 | 1.553726e-51 | -8.615850e-47 |
| Msa0853320 | Msa1201470 | 0.800291 | 1.544181e-48 | -8.615850e-47 |
| Msa0862100 | Msa1201470 | 0.814747 | 1.315927e-51 | -8.615850e-47 |
| Msa0864460 | Msa1201470 | 0.807602 | 4.665727e-50 | -8.615850e-47 |
| Msa0869450 | Msa1201470 | 0.811498 | 6.795138e-51 | -8.615850e-47 |
| Msa0878290 | Msa1201470 | 0.817463 | 3.255043e-52 | -8.615850e-47 |
| Msa0880140 | Msa1201470 | 0.835974 | 1.227703e-56 | -8.615850e-47 |
| Msa0930780 | Msa1201470 | 0.808066 | 3.716519e-50 | -8.615850e-47 |
| Msa0944030 | Msa1201470 | 0.808040 | 3.764145e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201470 | MtrunA17_Chr8g0371431 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 873 |
| Msa1201470 | MtrunA17_Chr5g0405841 | 77.014 | 422 | 90 | 3 | 3 | 424 | 2 | 416 | 0.0 | 671 |
| Msa1201470 | MtrunA17_Chr4g0045011 | 34.746 | 118 | 70 | 3 | 291 | 404 | 53 | 167 | 7.24e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201470 | AT4G35920.1 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 564 |
| Msa1201470 | AT4G35920.5 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 564 |
| Msa1201470 | AT4G35920.4 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 564 |
| Msa1201470 | AT4G35920.2 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 564 |
| Msa1201470 | AT4G35920.3 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 564 |
| Msa1201470 | AT2G17780.2 | 61.176 | 425 | 151 | 6 | 1 | 423 | 1 | 413 | 1.46e-177 | 502 |
| Msa1201470 | AT2G17780.7 | 60.798 | 426 | 153 | 5 | 1 | 423 | 1 | 415 | 7.42e-177 | 500 |
| Msa1201470 | AT2G17780.6 | 60.798 | 426 | 153 | 5 | 1 | 423 | 1 | 415 | 7.42e-177 | 500 |
| Msa1201470 | AT2G17780.10 | 60.798 | 426 | 153 | 5 | 1 | 423 | 1 | 415 | 7.42e-177 | 500 |
| Msa1201470 | AT2G17780.5 | 60.798 | 426 | 153 | 5 | 1 | 423 | 1 | 415 | 7.42e-177 | 500 |
| Msa1201470 | AT2G17780.1 | 60.798 | 426 | 153 | 5 | 1 | 423 | 1 | 415 | 7.42e-177 | 500 |
| Msa1201470 | AT2G17780.3 | 61.787 | 403 | 142 | 4 | 1 | 402 | 1 | 392 | 9.83e-172 | 487 |
| Msa1201470 | AT2G17780.9 | 61.787 | 403 | 142 | 4 | 1 | 402 | 1 | 392 | 9.83e-172 | 487 |
| Msa1201470 | AT2G17780.8 | 60.533 | 375 | 136 | 4 | 1 | 374 | 1 | 364 | 8.34e-153 | 438 |
| Msa1201470 | AT2G17780.4 | 58.675 | 317 | 119 | 4 | 1 | 316 | 1 | 306 | 3.94e-116 | 342 |
| Msa1201470 | AT3G18470.1 | 27.820 | 133 | 84 | 4 | 299 | 422 | 2 | 131 | 4.53e-11 | 60.8 |
Find 90 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTGGCTATTGGATATT+TGG | 0.129031 | 8_1:-54632723 | Msa1201470:three_prime_UTR |
| TCTAGAGGCTCTCGGGTTTC+AGG | 0.140533 | 8_1:+54635797 | None:intergenic |
| CTGCATCTAAACCTGTTAAT+TGG | 0.145603 | 8_1:+54635957 | None:intergenic |
| GATTTGATTCTCAAATATTT+TGG | 0.177370 | 8_1:-54632701 | Msa1201470:three_prime_UTR |
| ATAACAAACATGTTGTAATT+TGG | 0.187173 | 8_1:-54632779 | Msa1201470:three_prime_UTR |
| TTTGAGAAGGTCTTATATTT+TGG | 0.223155 | 8_1:-54635759 | Msa1201470:CDS |
| GTGCAAATCCGCGGGGTTTA+TGG | 0.237423 | 8_1:-54633107 | Msa1201470:intron |
| CCACATCAAATATTTAAAAT+TGG | 0.238636 | 8_1:-54632738 | Msa1201470:three_prime_UTR |
| GGAACATTGTTTATCAATTT+AGG | 0.249469 | 8_1:-54635688 | Msa1201470:CDS |
| GCATCTTCATGGGAACAATT+TGG | 0.278027 | 8_1:-54635998 | Msa1201470:CDS |
| GTGTCCTCTTTGTCATGTTC+TGG | 0.287445 | 8_1:+54634860 | None:intergenic |
| AAATATTTAAAATTGGCTAT+TGG | 0.289135 | 8_1:-54632731 | Msa1201470:three_prime_UTR |
| ATGTTGTAATTTGGTTGATT+AGG | 0.305126 | 8_1:-54632770 | Msa1201470:three_prime_UTR |
| GCAAATGTGGCCCAATTAAC+AGG | 0.307839 | 8_1:-54635968 | Msa1201470:CDS |
| GCACAACATCTTAAGTTGAT+TGG | 0.319124 | 8_1:-54635863 | Msa1201470:CDS |
| ACATCATTCACAGGCAAATA+TGG | 0.323563 | 8_1:-54634744 | Msa1201470:CDS |
| TGTTGTAATTTGGTTGATTA+GGG | 0.351657 | 8_1:-54632769 | Msa1201470:three_prime_UTR |
| CACAACATCTTAAGTTGATT+GGG | 0.378407 | 8_1:-54635862 | Msa1201470:CDS |
| CTAGTTGTTCTAGAGGCTCT+CGG | 0.379192 | 8_1:+54635789 | None:intergenic |
| ATCAAAATTCATATTAATGA+AGG | 0.390399 | 8_1:+54636940 | None:intergenic |
| GCTTCGGTGAATGAAAAGTT+TGG | 0.393080 | 8_1:+54634803 | None:intergenic |
| TGCATCTAAACCTGTTAATT+GGG | 0.397270 | 8_1:+54635958 | None:intergenic |
| TTAGATGCAGTAAAGTTGAT+TGG | 0.400705 | 8_1:-54635944 | Msa1201470:CDS |
| TCTTCAGGTGATAACTTCTC+TGG | 0.407119 | 8_1:+54634656 | None:intergenic |
| GGGCTAGTGTTGATCTTCTC+AGG | 0.411172 | 8_1:+54632830 | None:intergenic |
| ATGCTCGTGCTACTCGAGTC+AGG | 0.411445 | 8_1:-54635604 | Msa1201470:CDS |
| ACAATCTGGTAGTTATCTTC+AGG | 0.415787 | 8_1:+54634641 | None:intergenic |
| GAGACTTGAAGTTATTGAAA+AGG | 0.417718 | 8_1:-54634942 | Msa1201470:CDS |
| GATAGAGCATGGCATCTTCA+TGG | 0.424441 | 8_1:-54636009 | Msa1201470:exon |
| TTGAAAACTCAAGATCTTGA+AGG | 0.429876 | 8_1:-54636756 | Msa1201470:five_prime_UTR |
| CTATCTTTATTTGCTCGCCA+TGG | 0.432400 | 8_1:-54635714 | Msa1201470:CDS |
| CTAGAGGCTCTCGGGTTTCA+GGG | 0.434211 | 8_1:+54635798 | None:intergenic |
| CCCTCCAACTGCACAGTACA+TGG | 0.435922 | 8_1:-54632810 | Msa1201470:CDS |
| TAGATGCAGTAAAGTTGATT+GGG | 0.439101 | 8_1:-54635943 | Msa1201470:CDS |
| AGAATGACCTTTGCAGCCAT+TGG | 0.445867 | 8_1:+54634589 | None:intergenic |
| TAGGAAGATGATGAACATTC+CGG | 0.451122 | 8_1:-54633365 | Msa1201470:intron |
| GTTGCTATACTTGCTGCATA+AGG | 0.459740 | 8_1:-54633396 | Msa1201470:CDS |
| GTGATATTCTTTCATCATCA+AGG | 0.464449 | 8_1:-54634541 | Msa1201470:intron |
| GTTCATATCAGCAGGAAGAT+TGG | 0.467386 | 8_1:-54634025 | Msa1201470:CDS |
| GCTGCATAAGGAGGAAGCTT+AGG | 0.476922 | 8_1:-54633384 | Msa1201470:CDS |
| AACTAGAAGTTCATATCAGC+AGG | 0.477897 | 8_1:-54634033 | Msa1201470:CDS |
| AAGGACAATAAGTGTGTTGT+CGG | 0.483459 | 8_1:+54637001 | None:intergenic |
| TATCTTTATTTGCTCGCCAT+GGG | 0.490561 | 8_1:-54635713 | Msa1201470:CDS |
| TGACTTTATTGCATATTCGT+TGG | 0.495627 | 8_1:-54633431 | Msa1201470:CDS |
| TAGTTGTTCTAGAGGCTCTC+GGG | 0.496041 | 8_1:+54635790 | None:intergenic |
| ATACATACAAAGATAAGGTT+CGG | 0.499328 | 8_1:+54633977 | None:intergenic |
| CAAAGTTTCAGAAAAGAATC+CGG | 0.507843 | 8_1:-54634060 | Msa1201470:CDS |
| ATTGGATGACGAGGACCAAA+AGG | 0.511764 | 8_1:-54634903 | Msa1201470:CDS |
| GGAAAATACATACAAAGATA+AGG | 0.513530 | 8_1:+54633972 | None:intergenic |
| GGTTACTGTATTCTACAATC+TGG | 0.514590 | 8_1:+54634627 | None:intergenic |
| TTTATTTGCTCGCCATGGGA+TGG | 0.519477 | 8_1:-54635709 | Msa1201470:CDS |
| TCTGATGCCAATGGCTGCAA+AGG | 0.520932 | 8_1:-54634596 | Msa1201470:CDS |
| GATTCCATGTACTGTGCAGT+TGG | 0.522079 | 8_1:+54632806 | None:intergenic |
| TCCATGTACTGTGCAGTTGG+AGG | 0.523348 | 8_1:+54632809 | None:intergenic |
| TAACTTACATATTGGTCTGT+TGG | 0.528804 | 8_1:+54633800 | None:intergenic |
| TGAAAACTCAAGATCTTGAA+GGG | 0.530000 | 8_1:-54636755 | Msa1201470:five_prime_UTR |
| ATAGAGCATGGCATCTTCAT+GGG | 0.533797 | 8_1:-54636008 | Msa1201470:exon |
| GGAGAGAAGTGCAAATCCGC+GGG | 0.537886 | 8_1:-54633115 | Msa1201470:CDS |
| ATTTGGAGAGATTGCAAATG+TGG | 0.539302 | 8_1:-54635981 | Msa1201470:CDS |
| GGATCAATGCGCGTACACAT+TGG | 0.543539 | 8_1:-54634921 | Msa1201470:CDS |
| ACTAGAGTTACATCATTCAC+AGG | 0.549013 | 8_1:-54634753 | Msa1201470:CDS |
| CACTGCACTGCAACAACACA+TGG | 0.551166 | 8_1:+54636788 | None:intergenic |
| TGAGAAGATCTACACCATGC+AGG | 0.551996 | 8_1:-54636713 | Msa1201470:five_prime_UTR |
| AAGACATTCTTCTATCCTTG+TGG | 0.553618 | 8_1:-54633852 | Msa1201470:CDS |
| GCATCTTCTAGTTGTTCTAG+AGG | 0.556880 | 8_1:+54635782 | None:intergenic |
| GAGAAGATCTACACCATGCA+GGG | 0.560201 | 8_1:-54636712 | Msa1201470:five_prime_UTR |
| AATGCTATTTGTACAACCAT+AGG | 0.565364 | 8_1:-54636664 | Msa1201470:intron |
| CATTGTTTATCAATTTAGGA+AGG | 0.567874 | 8_1:-54635684 | Msa1201470:CDS |
| TATGGTTGTACAAATAGCAT+TGG | 0.575019 | 8_1:+54636666 | None:intergenic |
| CCATGTACTGTGCAGTTGGA+GGG | 0.578134 | 8_1:+54632810 | None:intergenic |
| CTTTAAAATCATCCCCTGCA+TGG | 0.580656 | 8_1:+54636699 | None:intergenic |
| ATAAACAATGTTCCATCCCA+TGG | 0.583807 | 8_1:+54635697 | None:intergenic |
| TCGGTTAAGAAATTTATGCA+TGG | 0.589947 | 8_1:+54637020 | None:intergenic |
| GAAACCAGAACATGACAAAG+AGG | 0.590361 | 8_1:-54634864 | Msa1201470:CDS |
| TGCTCGTGCTACTCGAGTCA+GGG | 0.597912 | 8_1:-54635603 | Msa1201470:intron |
| CGCGTACACATTGGATGACG+AGG | 0.600332 | 8_1:-54634912 | Msa1201470:CDS |
| GCTATACTTGCTGCATAAGG+AGG | 0.604551 | 8_1:-54633393 | Msa1201470:CDS |
| CACAGTCATTCTGATGCCAA+TGG | 0.607996 | 8_1:-54634605 | Msa1201470:CDS |
| ATCTTTGAAAATGTTCCACA+AGG | 0.610464 | 8_1:+54633837 | None:intergenic |
| AACTAGAAGATGCTTTGAGA+AGG | 0.613004 | 8_1:-54635772 | Msa1201470:CDS |
| TGGAGAGAAGTGCAAATCCG+CGG | 0.619338 | 8_1:-54633116 | Msa1201470:CDS |
| CTTCTCTGGAAGAGAATAAG+CGG | 0.635966 | 8_1:+54634670 | None:intergenic |
| TATGAACTTCTAGTTGACAC+CGG | 0.649307 | 8_1:+54634041 | None:intergenic |
| TGAAAGCTGCAAATACAGCA+AGG | 0.659950 | 8_1:-54635913 | Msa1201470:CDS |
| CTGTGTGAGCTGATAGAGCA+TGG | 0.678526 | 8_1:-54636020 | Msa1201470:exon |
| TTGTCGACTAGAGTAATGAG+AGG | 0.690301 | 8_1:+54635626 | None:intergenic |
| CATTGGCATCAGAATGACTG+TGG | 0.695572 | 8_1:+54634606 | None:intergenic |
| AGAAGATCTACACCATGCAG+GGG | 0.700251 | 8_1:-54636711 | Msa1201470:five_prime_UTR |
| GAGAGAAGTGCAAATCCGCG+GGG | 0.769768 | 8_1:-54633114 | Msa1201470:CDS |
| AAGTCATACCATAAACCCCG+CGG | 0.775462 | 8_1:+54633099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAAAAAAACAATTTTTT+AGG | + | chr8_1:54633261-54633280 | None:intergenic | 10.0% |
| !! | TTGATTTAATTAGAAAAATT+AGG | + | chr8_1:54633574-54633593 | None:intergenic | 10.0% |
| !!! | TAATTTTTCTAATTAAATCA+AGG | - | chr8_1:54633573-54633592 | Msa1201470:intron | 10.0% |
| !! | ATAAGTAAAAGAAAAAGAAA+AGG | + | chr8_1:54632665-54632684 | None:intergenic | 15.0% |
| !! | ATCAAAATTCATATTAATGA+AGG | + | chr8_1:54632707-54632726 | None:intergenic | 15.0% |
| !! | AAATATTATCTAGAAATGAA+GGG | + | chr8_1:54633073-54633092 | None:intergenic | 15.0% |
| !! | TTTAATCAAATTCATATTCA+TGG | - | chr8_1:54633109-54633128 | Msa1201470:CDS | 15.0% |
| !!! | AAAGAATATCACTTTTTTTA+TGG | + | chr8_1:54635095-54635114 | None:intergenic | 15.0% |
| !! | CATGATAAATAATAAAGTTA+TGG | + | chr8_1:54635462-54635481 | None:intergenic | 15.0% |
| !! | AAGAAAAACAAATTAACATA+AGG | + | chr8_1:54635696-54635715 | None:intergenic | 15.0% |
| !!! | AGAAAATATTCTTTTATTGT+TGG | + | chr8_1:54635731-54635750 | None:intergenic | 15.0% |
| !! | ATAACAAATAATCAAAATTC+AGG | - | chr8_1:54636023-54636042 | Msa1201470:exon | 15.0% |
| !! | AGACATGTATAAAATAAATT+AGG | + | chr8_1:54636639-54636658 | None:intergenic | 15.0% |
| !!! | AATTTATTTTATACATGTCT+TGG | - | chr8_1:54636639-54636658 | Msa1201470:intron | 15.0% |
| !!! | ATTTATTTTATACATGTCTT+GGG | - | chr8_1:54636640-54636659 | Msa1201470:intron | 15.0% |
| !!! | AAATATTTAAAATTGGCTAT+TGG | - | chr8_1:54636913-54636932 | Msa1201470:five_prime_UTR | 15.0% |
| !! | AATGATCATTTATTTACCTA+TGG | + | chr8_1:54632999-54633018 | None:intergenic | 20.0% |
| !! | TATAACTTCACAAATCAAAA+TGG | - | chr8_1:54633033-54633052 | Msa1201470:intron | 20.0% |
| !! | CAAATATTATCTAGAAATGA+AGG | + | chr8_1:54633074-54633093 | None:intergenic | 20.0% |
| !! | TGAATTTGATTAAATTTGTC+TGG | + | chr8_1:54633103-54633122 | None:intergenic | 20.0% |
| !!! | AAAGTTTTTAGCTTTTTTGA+CGG | - | chr8_1:54633457-54633476 | Msa1201470:intron | 20.0% |
| !!! | GATTGAAAATGTAATTTTGA+AGG | - | chr8_1:54633595-54633614 | Msa1201470:intron | 20.0% |
| !!! | ATTGCAGAAATTTTATTTTC+CGG | - | chr8_1:54634573-54634592 | Msa1201470:CDS | 20.0% |
| !! | TTTGAAAATTCTAACTTATC+CGG | + | chr8_1:54634595-54634614 | None:intergenic | 20.0% |
| !!! | ATAATAATAACTTGCTTCTT+TGG | - | chr8_1:54634668-54634687 | Msa1201470:CDS | 20.0% |
| !!! | ATTTTCTTTTTTAAGTGCTT+CGG | + | chr8_1:54634860-54634879 | None:intergenic | 20.0% |
| !! | TACATAACTACTATATCATT+TGG | + | chr8_1:54635191-54635210 | None:intergenic | 20.0% |
| !!! | TTTAACACCGTTATATTTTT+AGG | - | chr8_1:54635331-54635350 | Msa1201470:intron | 20.0% |
| !!! | TTAACACCGTTATATTTTTA+GGG | - | chr8_1:54635332-54635351 | Msa1201470:intron | 20.0% |
| !! | GATAAATAATAAAGTTATGG+AGG | + | chr8_1:54635459-54635478 | None:intergenic | 20.0% |
| !! | AAAGATTGTAACTTACATAT+TGG | + | chr8_1:54635855-54635874 | None:intergenic | 20.0% |
| !!! | GATTTAAGTTACAAATATTC+AGG | - | chr8_1:54636081-54636100 | Msa1201470:intron | 20.0% |
| !! | ACAAACATTATACAAAAGAA+AGG | + | chr8_1:54636313-54636332 | None:intergenic | 20.0% |
| !!! | GTTTTAGCTTTATAATATTC+CGG | - | chr8_1:54636350-54636369 | Msa1201470:intron | 20.0% |
| !! | ATAACAAACATGTTGTAATT+TGG | - | chr8_1:54636865-54636884 | Msa1201470:five_prime_UTR | 20.0% |
| !!! | CCAATTTTAAATATTTGATG+TGG | + | chr8_1:54636909-54636928 | None:intergenic | 20.0% |
| !!! | CCACATCAAATATTTAAAAT+TGG | - | chr8_1:54636906-54636925 | Msa1201470:five_prime_UTR | 20.0% |
| !!! | GATTTGATTCTCAAATATTT+TGG | - | chr8_1:54636943-54636962 | Msa1201470:five_prime_UTR | 20.0% |
| !! | TAAAAAGCTAAATCACATAT+AGG | + | chr8_1:54636978-54636997 | None:intergenic | 20.0% |
| !!! | TTAGCTTTTTAATATACAGT+TGG | - | chr8_1:54636987-54637006 | Msa1201470:five_prime_UTR | 20.0% |
| !!! | CACTTTTAAGATTCACTAAT+TGG | - | chr8_1:54632788-54632807 | Msa1201470:exon | 25.0% |
| ! | AAGAAATGTTGATCAACAAT+TGG | - | chr8_1:54633406-54633425 | Msa1201470:CDS | 25.0% |
| ! | ATTTCCAAAATATTTGCACT+GGG | + | chr8_1:54633523-54633542 | None:intergenic | 25.0% |
| ! | TATTTCCAAAATATTTGCAC+TGG | + | chr8_1:54633524-54633543 | None:intergenic | 25.0% |
| !!! | GAAAATGTAATTTTGAAGGT+TGG | - | chr8_1:54633599-54633618 | Msa1201470:intron | 25.0% |
| !!! | TTTGAGAAGGTCTTATATTT+TGG | - | chr8_1:54633885-54633904 | Msa1201470:intron | 25.0% |
| ! | GGAACATTGTTTATCAATTT+AGG | - | chr8_1:54633956-54633975 | Msa1201470:intron | 25.0% |
| ! | CATTGTTTATCAATTTAGGA+AGG | - | chr8_1:54633960-54633979 | Msa1201470:intron | 25.0% |
| !!! | AAGCAACAAACATTTTAAAG+TGG | + | chr8_1:54634313-54634332 | None:intergenic | 25.0% |
| ! | GTACACTAAAATATCAAGAA+CGG | - | chr8_1:54634525-54634544 | Msa1201470:intron | 25.0% |
| ! | ATCTCAAAACACATAAAAGT+TGG | + | chr8_1:54635148-54635167 | None:intergenic | 25.0% |
| ! | ATTGAGCCCTAAAAATATAA+CGG | + | chr8_1:54635341-54635360 | None:intergenic | 25.0% |
| !!! | TTTTGCCATTTTTACCATTT+CGG | - | chr8_1:54635504-54635523 | Msa1201470:intron | 25.0% |
| ! | ATACATACAAAGATAAGGTT+CGG | + | chr8_1:54635670-54635689 | None:intergenic | 25.0% |
| ! | GGAAAATACATACAAAGATA+AGG | + | chr8_1:54635675-54635694 | None:intergenic | 25.0% |
| !! | TAGTAGATATTTTCATTTGC+AGG | - | chr8_1:54635765-54635784 | Msa1201470:CDS | 25.0% |
| ! | TTGCATGAAGTTCATTTATA+TGG | + | chr8_1:54635968-54635987 | None:intergenic | 25.0% |
| ! | AATTTCAACAGCTATAATAG+AGG | + | chr8_1:54636049-54636068 | None:intergenic | 25.0% |
| !!! | CACAACCTCAATATTTTTAA+GGG | + | chr8_1:54636141-54636160 | None:intergenic | 25.0% |
| ! | TTCGTTATGTTATGATATAG+TGG | - | chr8_1:54636378-54636397 | Msa1201470:intron | 25.0% |
| ! | CTAGATCAAAATCAAAAGTT+TGG | + | chr8_1:54636686-54636705 | None:intergenic | 25.0% |
| ! | ATGTTGTAATTTGGTTGATT+AGG | - | chr8_1:54636874-54636893 | Msa1201470:five_prime_UTR | 25.0% |
| ! | TGTTGTAATTTGGTTGATTA+GGG | - | chr8_1:54636875-54636894 | Msa1201470:five_prime_UTR | 25.0% |
| ! | AAAATTGGCTATTGGATATT+TGG | - | chr8_1:54636921-54636940 | Msa1201470:five_prime_UTR | 25.0% |
| TCGGTTAAGAAATTTATGCA+TGG | + | chr8_1:54632627-54632646 | None:intergenic | 30.0% | |
| TTGAAAACTCAAGATCTTGA+AGG | - | chr8_1:54632888-54632907 | Msa1201470:intron | 30.0% | |
| TGAAAACTCAAGATCTTGAA+GGG | - | chr8_1:54632889-54632908 | Msa1201470:intron | 30.0% | |
| TATGGTTGTACAAATAGCAT+TGG | + | chr8_1:54632981-54633000 | None:intergenic | 30.0% | |
| ! | AATGCTATTTGTACAACCAT+AGG | - | chr8_1:54632980-54632999 | Msa1201470:intron | 30.0% |
| AAATGTTGATCAACAATTGG+TGG | - | chr8_1:54633409-54633428 | Msa1201470:CDS | 30.0% | |
| AATGTTGATCAACAATTGGT+GGG | - | chr8_1:54633410-54633429 | Msa1201470:CDS | 30.0% | |
| TGCATCTAAACCTGTTAATT+GGG | + | chr8_1:54633689-54633708 | None:intergenic | 30.0% | |
| ! | TTAGATGCAGTAAAGTTGAT+TGG | - | chr8_1:54633700-54633719 | Msa1201470:intron | 30.0% |
| ! | TAGATGCAGTAAAGTTGATT+GGG | - | chr8_1:54633701-54633720 | Msa1201470:intron | 30.0% |
| !! | CACAACATCTTAAGTTGATT+GGG | - | chr8_1:54633782-54633801 | Msa1201470:intron | 30.0% |
| !!! | TATTTTGGTCAATAGTTGTC+AGG | - | chr8_1:54633900-54633919 | Msa1201470:intron | 30.0% |
| ACATACATCAATTGAAACCA+GGG | + | chr8_1:54634119-54634138 | None:intergenic | 30.0% | |
| GCTCGATACAATTTACAATT+TGG | + | chr8_1:54634197-54634216 | None:intergenic | 30.0% | |
| GAGACTTGAAGTTATTGAAA+AGG | - | chr8_1:54634702-54634721 | Msa1201470:CDS | 30.0% | |
| GTGATATTCTTTCATCATCA+AGG | - | chr8_1:54635103-54635122 | Msa1201470:intron | 30.0% | |
| ! | ACAACAAACAAAAAAGTGCA+AGG | + | chr8_1:54635223-54635242 | None:intergenic | 30.0% |
| ! | AACGGTGTTAAAAATCTGAA+GGG | + | chr8_1:54635323-54635342 | None:intergenic | 30.0% |
| ! | TAACGGTGTTAAAAATCTGA+AGG | + | chr8_1:54635324-54635343 | None:intergenic | 30.0% |
| AGTAACCGAAATGGTAAAAA+TGG | + | chr8_1:54635512-54635531 | None:intergenic | 30.0% | |
| CAAAGTTTCAGAAAAGAATC+CGG | - | chr8_1:54635584-54635603 | Msa1201470:intron | 30.0% | |
| ! | ATCTTTGAAAATGTTCCACA+AGG | + | chr8_1:54635810-54635829 | None:intergenic | 30.0% |
| ! | TAACTTACATATTGGTCTGT+TGG | + | chr8_1:54635847-54635866 | None:intergenic | 30.0% |
| TGATATAGTGAACACTGAAA+TGG | - | chr8_1:54635881-54635900 | Msa1201470:CDS | 30.0% | |
| GATATAGTGAACACTGAAAT+GGG | - | chr8_1:54635882-54635901 | Msa1201470:CDS | 30.0% | |
| ATATAGTGAACACTGAAATG+GGG | - | chr8_1:54635883-54635902 | Msa1201470:CDS | 30.0% | |
| ATAGCATAATATTTGTGCCA+TGG | - | chr8_1:54635925-54635944 | Msa1201470:CDS | 30.0% | |
| TAGCATAATATTTGTGCCAT+GGG | - | chr8_1:54635926-54635945 | Msa1201470:CDS | 30.0% | |
| TAAACATCAATTTAAGCCCA+TGG | + | chr8_1:54635945-54635964 | None:intergenic | 30.0% | |
| CCAGATAGAAAGAATAATAG+AGG | + | chr8_1:54636107-54636126 | None:intergenic | 30.0% | |
| CCTCTATTATTCTTTCTATC+TGG | - | chr8_1:54636104-54636123 | Msa1201470:intron | 30.0% | |
| !! | AACCTCAATATTTTTAAGGG+TGG | + | chr8_1:54636138-54636157 | None:intergenic | 30.0% |
| !! | GCACAACCTCAATATTTTTA+AGG | + | chr8_1:54636142-54636161 | None:intergenic | 30.0% |
| TGACTTTATTGCATATTCGT+TGG | - | chr8_1:54636213-54636232 | Msa1201470:intron | 30.0% | |
| CAAAAGAAAGGTAACATTAC+CGG | + | chr8_1:54636301-54636320 | None:intergenic | 30.0% | |
| CATAACATAACGAACATTAC+CGG | + | chr8_1:54636372-54636391 | None:intergenic | 30.0% | |
| ACTCATTTACATTCTATGTC+AGG | - | chr8_1:54636443-54636462 | Msa1201470:intron | 30.0% | |
| CTCATTTACATTCTATGTCA+GGG | - | chr8_1:54636444-54636463 | Msa1201470:intron | 30.0% | |
| AAGGACAATAAGTGTGTTGT+CGG | + | chr8_1:54632646-54632665 | None:intergenic | 35.0% | |
| TGTGTATTGTCTATGAAGCA+CGG | - | chr8_1:54633133-54633152 | Msa1201470:CDS | 35.0% | |
| ACATGTCATACAAGTGTCAT+AGG | + | chr8_1:54633216-54633235 | None:intergenic | 35.0% | |
| TATGACTGCTATACAGTTGT+CGG | + | chr8_1:54633309-54633328 | None:intergenic | 35.0% | |
| ! | TTTGATTGAGTTGTCTGACA+CGG | + | chr8_1:54633336-54633355 | None:intergenic | 35.0% |
| ATGTTGATCAACAATTGGTG+GGG | - | chr8_1:54633411-54633430 | Msa1201470:CDS | 35.0% | |
| !!! | TTAGCTTTTTTGACGGTAGA+TGG | - | chr8_1:54633464-54633483 | Msa1201470:intron | 35.0% |
| TTGACGGTAGATGGATAAAA+TGG | - | chr8_1:54633473-54633492 | Msa1201470:intron | 35.0% | |
| ! | TGTTCCCAGTGCAAATATTT+TGG | - | chr8_1:54633516-54633535 | Msa1201470:intron | 35.0% |
| ATTTGGAGAGATTGCAAATG+TGG | - | chr8_1:54633663-54633682 | Msa1201470:intron | 35.0% | |
| CTGCATCTAAACCTGTTAAT+TGG | + | chr8_1:54633690-54633709 | None:intergenic | 35.0% | |
| !! | GCACAACATCTTAAGTTGAT+TGG | - | chr8_1:54633781-54633800 | Msa1201470:intron | 35.0% |
| !! | AACTAGAAGATGCTTTGAGA+AGG | - | chr8_1:54633872-54633891 | Msa1201470:intron | 35.0% |
| ! | TATCTTTATTTGCTCGCCAT+GGG | - | chr8_1:54633931-54633950 | Msa1201470:intron | 35.0% |
| ATAAACAATGTTCCATCCCA+TGG | + | chr8_1:54633950-54633969 | None:intergenic | 35.0% | |
| CATACATCAATTGAAACCAG+GGG | + | chr8_1:54634118-54634137 | None:intergenic | 35.0% | |
| GACATACATCAATTGAAACC+AGG | + | chr8_1:54634120-54634139 | None:intergenic | 35.0% | |
| AAACGTCAAGGAACTAGTAT+TGG | + | chr8_1:54634257-54634276 | None:intergenic | 35.0% | |
| TCAATAGCAAGTAAACGTCA+AGG | + | chr8_1:54634269-54634288 | None:intergenic | 35.0% | |
| !! | CTATGCAAGATTCCTTGTTT+TGG | - | chr8_1:54634413-54634432 | Msa1201470:intron | 35.0% |
| CACACATATTCACCAAAACA+AGG | + | chr8_1:54634428-54634447 | None:intergenic | 35.0% | |
| !! | CTTGCTTCTTTGGAATATTC+AGG | - | chr8_1:54634678-54634697 | Msa1201470:CDS | 35.0% |
| ! | AAGAGTTTTCTTCAGCACTA+CGG | + | chr8_1:54634809-54634828 | None:intergenic | 35.0% |
| ACTAGAGTTACATCATTCAC+AGG | - | chr8_1:54634891-54634910 | Msa1201470:CDS | 35.0% | |
| ACATCATTCACAGGCAAATA+TGG | - | chr8_1:54634900-54634919 | Msa1201470:CDS | 35.0% | |
| ACAATCTGGTAGTTATCTTC+AGG | + | chr8_1:54635006-54635025 | None:intergenic | 35.0% | |
| GGTTACTGTATTCTACAATC+TGG | + | chr8_1:54635020-54635039 | None:intergenic | 35.0% | |
| CACATAAAAGTTGGAGAAGA+GGG | + | chr8_1:54635139-54635158 | None:intergenic | 35.0% | |
| ACACATAAAAGTTGGAGAAG+AGG | + | chr8_1:54635140-54635159 | None:intergenic | 35.0% | |
| GCAACTAGAAAATTAATCCC+TGG | - | chr8_1:54635263-54635282 | Msa1201470:intron | 35.0% | |
| GTGTTAAAAATCTGAAGGGA+GGG | + | chr8_1:54635319-54635338 | None:intergenic | 35.0% | |
| TTTCATCAGATGTCATGGAT+TGG | + | chr8_1:54635365-54635384 | None:intergenic | 35.0% | |
| AGTGTTTGGATGAGATGATT+CGG | + | chr8_1:54635399-54635418 | None:intergenic | 35.0% | |
| TCATCTCATCCAAACACTAT+TGG | - | chr8_1:54635401-54635420 | Msa1201470:intron | 35.0% | |
| CATCTCATCCAAACACTATT+GGG | - | chr8_1:54635402-54635421 | Msa1201470:intron | 35.0% | |
| AATAAAGTTATGGAGGAAGC+AGG | + | chr8_1:54635452-54635471 | None:intergenic | 35.0% | |
| ACGAAAGTTAGTAACCGAAA+TGG | + | chr8_1:54635521-54635540 | None:intergenic | 35.0% | |
| !!! | CGGATTCTTTTCTGAAACTT+TGG | + | chr8_1:54635586-54635605 | None:intergenic | 35.0% |
| ! | TATGAACTTCTAGTTGACAC+CGG | + | chr8_1:54635606-54635625 | None:intergenic | 35.0% |
| AACTAGAAGTTCATATCAGC+AGG | - | chr8_1:54635611-54635630 | Msa1201470:CDS | 35.0% | |
| AAGACATTCTTCTATCCTTG+TGG | - | chr8_1:54635792-54635811 | Msa1201470:CDS | 35.0% | |
| TATAGTGAACACTGAAATGG+GGG | - | chr8_1:54635884-54635903 | Msa1201470:CDS | 35.0% | |
| TGCCACCCTTAAAAATATTG+AGG | - | chr8_1:54636133-54636152 | Msa1201470:intron | 35.0% | |
| TAGGAAGATGATGAACATTC+CGG | - | chr8_1:54636279-54636298 | Msa1201470:intron | 35.0% | |
| ATTTACATTCTATGTCAGGG+AGG | - | chr8_1:54636447-54636466 | Msa1201470:intron | 35.0% | |
| !!! | CGCATCTTTTTCAACATTTG+AGG | - | chr8_1:54636573-54636592 | Msa1201470:intron | 35.0% |
| !! | CTTTAAAATCATCCCCTGCA+TGG | + | chr8_1:54632948-54632967 | None:intergenic | 40.0% |
| ! | CATGCAGGGGATGATTTTAA+AGG | - | chr8_1:54632946-54632965 | Msa1201470:intron | 40.0% |
| GACACTTGTATGACATGTGT+CGG | - | chr8_1:54633218-54633237 | Msa1201470:intron | 40.0% | |
| CTTGATCAGCCTTGAATCTA+CGG | + | chr8_1:54633389-54633408 | None:intergenic | 40.0% | |
| ATAGAGCATGGCATCTTCAT+GGG | - | chr8_1:54633636-54633655 | Msa1201470:intron | 40.0% | |
| GCATCTTCATGGGAACAATT+TGG | - | chr8_1:54633646-54633665 | Msa1201470:intron | 40.0% | |
| TGAAAGCTGCAAATACAGCA+AGG | - | chr8_1:54633731-54633750 | Msa1201470:intron | 40.0% | |
| ! | GCATCTTCTAGTTGTTCTAG+AGG | + | chr8_1:54633865-54633884 | None:intergenic | 40.0% |
| ! | CTATCTTTATTTGCTCGCCA+TGG | - | chr8_1:54633930-54633949 | Msa1201470:intron | 40.0% |
| ! | TTGTCGACTAGAGTAATGAG+AGG | + | chr8_1:54634021-54634040 | None:intergenic | 40.0% |
| TTAAGCTATCAAATGACCCC+TGG | - | chr8_1:54634099-54634118 | Msa1201470:intron | 40.0% | |
| TGCTATTGATCATTCGTGCT+AGG | - | chr8_1:54634280-54634299 | Msa1201470:intron | 40.0% | |
| AAGAACGGCTCTGTATATGA+TGG | - | chr8_1:54634540-54634559 | Msa1201470:intron | 40.0% | |
| ! | GAAAAACAGTCTGCACCTTT+TGG | + | chr8_1:54634759-54634778 | None:intergenic | 40.0% |
| GAAACCAGAACATGACAAAG+AGG | - | chr8_1:54634780-54634799 | Msa1201470:CDS | 40.0% | |
| GCTTCGGTGAATGAAAAGTT+TGG | + | chr8_1:54634844-54634863 | None:intergenic | 40.0% | |
| ! | CTTCTCTGGAAGAGAATAAG+CGG | + | chr8_1:54634977-54634996 | None:intergenic | 40.0% |
| TCTTCAGGTGATAACTTCTC+TGG | + | chr8_1:54634991-54635010 | None:intergenic | 40.0% | |
| TTGCCTATTATGGCTCTTCT+CGG | + | chr8_1:54635291-54635310 | None:intergenic | 40.0% | |
| GGTGTTAAAAATCTGAAGGG+AGG | + | chr8_1:54635320-54635339 | None:intergenic | 40.0% | |
| TCCATGACATCTGATGAAAC+TGG | - | chr8_1:54635366-54635385 | Msa1201470:intron | 40.0% | |
| TCCAGTTTCATCAGATGTCA+TGG | + | chr8_1:54635370-54635389 | None:intergenic | 40.0% | |
| !! | AGTATCGACCCAATAGTGTT+TGG | + | chr8_1:54635413-54635432 | None:intergenic | 40.0% |
| GTTCATATCAGCAGGAAGAT+TGG | - | chr8_1:54635619-54635638 | Msa1201470:CDS | 40.0% | |
| ATAGTGAACACTGAAATGGG+GGG | - | chr8_1:54635885-54635904 | Msa1201470:CDS | 40.0% | |
| ! | GTTGCTATACTTGCTGCATA+AGG | - | chr8_1:54636248-54636267 | Msa1201470:intron | 40.0% |
| ! | GTTGCGCTTTTGTACAAGAA+TGG | - | chr8_1:54636508-54636527 | Msa1201470:intron | 40.0% |
| TCAAAAGTTTGGCCAAGAAG+AGG | + | chr8_1:54636675-54636694 | None:intergenic | 40.0% | |
| TCTCAGGTTCTTCTGCAAAA+TGG | + | chr8_1:54636801-54636820 | None:intergenic | 40.0% | |
| TGAGAAGATCTACACCATGC+AGG | - | chr8_1:54632931-54632950 | Msa1201470:intron | 45.0% | |
| GAGAAGATCTACACCATGCA+GGG | - | chr8_1:54632932-54632951 | Msa1201470:intron | 45.0% | |
| AGAAGATCTACACCATGCAG+GGG | - | chr8_1:54632933-54632952 | Msa1201470:intron | 45.0% | |
| GCTATACAGTTGTCGGACAA+CGG | + | chr8_1:54633302-54633321 | None:intergenic | 45.0% | |
| TTCCACACACCGTAGATTCA+AGG | - | chr8_1:54633377-54633396 | Msa1201470:CDS | 45.0% | |
| GATAGAGCATGGCATCTTCA+TGG | - | chr8_1:54633635-54633654 | Msa1201470:intron | 45.0% | |
| GCAAATGTGGCCCAATTAAC+AGG | - | chr8_1:54633676-54633695 | Msa1201470:intron | 45.0% | |
| !! | TAGTTGTTCTAGAGGCTCTC+GGG | + | chr8_1:54633857-54633876 | None:intergenic | 45.0% |
| !! | CTAGTTGTTCTAGAGGCTCT+CGG | + | chr8_1:54633858-54633877 | None:intergenic | 45.0% |
| TTTATTTGCTCGCCATGGGA+TGG | - | chr8_1:54633935-54633954 | Msa1201470:intron | 45.0% | |
| ATTGGATGACGAGGACCAAA+AGG | - | chr8_1:54634741-54634760 | Msa1201470:CDS | 45.0% | |
| GTGTCCTCTTTGTCATGTTC+TGG | + | chr8_1:54634787-54634806 | None:intergenic | 45.0% | |
| CATTGGCATCAGAATGACTG+TGG | + | chr8_1:54635041-54635060 | None:intergenic | 45.0% | |
| CACAGTCATTCTGATGCCAA+TGG | - | chr8_1:54635039-54635058 | Msa1201470:intron | 45.0% | |
| AGAATGACCTTTGCAGCCAT+TGG | + | chr8_1:54635058-54635077 | None:intergenic | 45.0% | |
| AGTTGCGCGAGAATGATACT+CGG | + | chr8_1:54635249-54635268 | None:intergenic | 45.0% | |
| GAGGGATGTGTTGCCTATTA+TGG | + | chr8_1:54635301-54635320 | None:intergenic | 45.0% | |
| TTGCATACTTCTGCAGAAGC+TGG | + | chr8_1:54636193-54636212 | None:intergenic | 45.0% | |
| ! | GCTATACTTGCTGCATAAGG+AGG | - | chr8_1:54636251-54636270 | Msa1201470:intron | 45.0% |
| AAGTCATACCATAAACCCCG+CGG | + | chr8_1:54636548-54636567 | None:intergenic | 45.0% | |
| GGGCTAATCTATCCTCTTCT+TGG | - | chr8_1:54636660-54636679 | Msa1201470:intron | 45.0% | |
| GATTCCATGTACTGTGCAGT+TGG | + | chr8_1:54636841-54636860 | None:intergenic | 45.0% | |
| CACTGCACTGCAACAACACA+TGG | + | chr8_1:54632859-54632878 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACCTCT+AGG | - | chr8_1:54633144-54633163 | Msa1201470:CDS | 50.0% | |
| !! | CAAGTGTCATAGGAGTGTCG+CGG | + | chr8_1:54633206-54633225 | None:intergenic | 50.0% |
| AGCCTTGAATCTACGGTGTG+TGG | + | chr8_1:54633382-54633401 | None:intergenic | 50.0% | |
| CTGTGTGAGCTGATAGAGCA+TGG | - | chr8_1:54633624-54633643 | Msa1201470:intron | 50.0% | |
| GGATCAATGCGCGTACACAT+TGG | - | chr8_1:54634723-54634742 | Msa1201470:CDS | 50.0% | |
| TCTGATGCCAATGGCTGCAA+AGG | - | chr8_1:54635048-54635067 | Msa1201470:intron | 50.0% | |
| GAGCCGAGAAGAGCCATAAT+AGG | - | chr8_1:54635285-54635304 | Msa1201470:intron | 50.0% | |
| AGTTATGGAGGAAGCAGGAG+AGG | + | chr8_1:54635447-54635466 | None:intergenic | 50.0% | |
| GCTGCATAAGGAGGAAGCTT+AGG | - | chr8_1:54636260-54636279 | Msa1201470:intron | 50.0% | |
| ! | TGGAGAGAAGTGCAAATCCG+CGG | - | chr8_1:54636528-54636547 | Msa1201470:intron | 50.0% |
| !! | GGGCTAGTGTTGATCTTCTC+AGG | + | chr8_1:54636817-54636836 | None:intergenic | 50.0% |
| CCATGTACTGTGCAGTTGGA+GGG | + | chr8_1:54636837-54636856 | None:intergenic | 50.0% | |
| TCCATGTACTGTGCAGTTGG+AGG | + | chr8_1:54636838-54636857 | None:intergenic | 50.0% | |
| CATGACACGCTAGGTCCTAG+AGG | + | chr8_1:54633162-54633181 | None:intergenic | 55.0% | |
| !! | CTCTAGGACCTAGCGTGTCA+TGG | - | chr8_1:54633160-54633179 | Msa1201470:CDS | 55.0% |
| GTCAGACACCATGACACGCT+AGG | + | chr8_1:54633171-54633190 | None:intergenic | 55.0% | |
| CTAGAGGCTCTCGGGTTTCA+GGG | + | chr8_1:54633849-54633868 | None:intergenic | 55.0% | |
| TCTAGAGGCTCTCGGGTTTC+AGG | + | chr8_1:54633850-54633869 | None:intergenic | 55.0% | |
| ! | ATGCTCGTGCTACTCGAGTC+AGG | - | chr8_1:54634040-54634059 | Msa1201470:CDS | 55.0% |
| ! | TGCTCGTGCTACTCGAGTCA+GGG | - | chr8_1:54634041-54634060 | Msa1201470:CDS | 55.0% |
| CGCGTACACATTGGATGACG+AGG | - | chr8_1:54634732-54634751 | Msa1201470:CDS | 55.0% | |
| TATGGCTCTTCTCGGCTCCA+GGG | + | chr8_1:54635283-54635302 | None:intergenic | 55.0% | |
| TTATGGCTCTTCTCGGCTCC+AGG | + | chr8_1:54635284-54635303 | None:intergenic | 55.0% | |
| ! | GGAGAGAAGTGCAAATCCGC+GGG | - | chr8_1:54636529-54636548 | Msa1201470:intron | 55.0% |
| ! | GAGAGAAGTGCAAATCCGCG+GGG | - | chr8_1:54636530-54636549 | Msa1201470:intron | 55.0% |
| GTGCAAATCCGCGGGGTTTA+TGG | - | chr8_1:54636537-54636556 | Msa1201470:intron | 55.0% | |
| CCCTCCAACTGCACAGTACA+TGG | - | chr8_1:54636834-54636853 | Msa1201470:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 54632583 | 54637083 | 54632583 | ID=Msa1201470;Name=Msa1201470 |
| chr8_1 | mRNA | 54632583 | 54637083 | 54632583 | ID=Msa1201470-mRNA-1;Parent=Msa1201470;Name=Msa1201470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=445|1|1|1|0.85|0.75|8|219|424 |
| chr8_1 | exon | 54632583 | 54632857 | 54632583 | ID=Msa1201470-mRNA-1:exon:17624;Parent=Msa1201470-mRNA-1 |
| chr8_1 | exon | 54633108 | 54633201 | 54633108 | ID=Msa1201470-mRNA-1:exon:17623;Parent=Msa1201470-mRNA-1 |
| chr8_1 | exon | 54633366 | 54633472 | 54633366 | ID=Msa1201470-mRNA-1:exon:17622;Parent=Msa1201470-mRNA-1 |
| chr8_1 | exon | 54633808 | 54633879 | 54633808 | ID=Msa1201470-mRNA-1:exon:17621;Parent=Msa1201470-mRNA-1 |
| chr8_1 | exon | 54633985 | 54634085 | 54633985 | ID=Msa1201470-mRNA-1:exon:17620;Parent=Msa1201470-mRNA-1 |
| chr8_1 | exon | 54634542 | 54634966 | 54634542 | ID=Msa1201470-mRNA-1:exon:17619;Parent=Msa1201470-mRNA-1 |
| chr8_1 | exon | 54635604 | 54636049 | 54635604 | ID=Msa1201470-mRNA-1:exon:17618;Parent=Msa1201470-mRNA-1 |
| chr8_1 | exon | 54636665 | 54637083 | 54636665 | ID=Msa1201470-mRNA-1:exon:17617;Parent=Msa1201470-mRNA-1 |
| chr8_1 | five_prime_UTR | 54636665 | 54637083 | 54636665 | ID=Msa1201470-mRNA-1:five_prime_utr;Parent=Msa1201470-mRNA-1 |
| chr8_1 | five_prime_UTR | 54636024 | 54636049 | 54636024 | ID=Msa1201470-mRNA-1:five_prime_utr;Parent=Msa1201470-mRNA-1 |
| chr8_1 | CDS | 54635604 | 54636023 | 54635604 | ID=Msa1201470-mRNA-1:cds;Parent=Msa1201470-mRNA-1 |
| chr8_1 | CDS | 54634542 | 54634966 | 54634542 | ID=Msa1201470-mRNA-1:cds;Parent=Msa1201470-mRNA-1 |
| chr8_1 | CDS | 54633985 | 54634085 | 54633985 | ID=Msa1201470-mRNA-1:cds;Parent=Msa1201470-mRNA-1 |
| chr8_1 | CDS | 54633808 | 54633879 | 54633808 | ID=Msa1201470-mRNA-1:cds;Parent=Msa1201470-mRNA-1 |
| chr8_1 | CDS | 54633366 | 54633472 | 54633366 | ID=Msa1201470-mRNA-1:cds;Parent=Msa1201470-mRNA-1 |
| chr8_1 | CDS | 54633108 | 54633201 | 54633108 | ID=Msa1201470-mRNA-1:cds;Parent=Msa1201470-mRNA-1 |
| chr8_1 | CDS | 54632802 | 54632857 | 54632802 | ID=Msa1201470-mRNA-1:cds;Parent=Msa1201470-mRNA-1 |
| chr8_1 | three_prime_UTR | 54632583 | 54632801 | 54632583 | ID=Msa1201470-mRNA-1:three_prime_utr;Parent=Msa1201470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
